Cow genome map


           Conread name:
           rpigcf0_008845.y1
        

               Conread position:
               1-448
               

               Cow position:
               chr1:42256836-42256383 (view UCSC Genome Browser custom track)
               

               Alignm length:
               459
               

               Alignm identity:
               303
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               108, 297
               

               Conread position:
               11-448
               

               Cow position:
               chr1:29916102-29916530 (view UCSC Genome Browser custom track)
               

               Alignm length:
               444
               

               Alignm identity:
               309
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               191, 97
               

               Conread position:
               11-506
               

               Cow position:
               chr1:95017827-95017365 (view UCSC Genome Browser custom track)
               

               Alignm length:
               499
               

               Alignm identity:
               344
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               224, 42
               

               Conread position:
               11-508
               

               Cow position:
               chr1:23041259-23041741 (view UCSC Genome Browser custom track)
               

               Alignm length:
               503
               

               Alignm identity:
               348
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               200, 102
               

               Conread position:
               11-508
               

               Cow position:
               chr1:35844243-35843744 (view UCSC Genome Browser custom track)
               

               Alignm length:
               508
               

               Alignm identity:
               336
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               97, 26
               

               Conread position:
               11-508
               

               Cow position:
               chr1:77462050-77462536 (view UCSC Genome Browser custom track)
               

               Alignm length:
               505
               

               Alignm identity:
               332
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               79, 25
               

               Conread position:
               11-508
               

               Cow position:
               chr1:95100650-95101148 (view UCSC Genome Browser custom track)
               

               Alignm length:
               515
               

               Alignm identity:
               342
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               174, 49
               

               Conread position:
               12-508
               

               Cow position:
               chr1:97622517-97622042 (view UCSC Genome Browser custom track)
               

               Alignm length:
               505
               

               Alignm identity:
               356
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               67, 189
               

               Conread position:
               14-434
               

               Cow position:
               chr1:33331383-33330989 (view UCSC Genome Browser custom track)
               

               Alignm length:
               424
               

               Alignm identity:
               278
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               97, 47
               

               Conread position:
               15-401
               

               Cow position:
               chr1:72624802-72625188 (view UCSC Genome Browser custom track)
               

               Alignm length:
               395
               

               Alignm identity:
               250
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               102, 277
               

               Conread position:
               15-427
               

               Cow position:
               chr1:48444490-48444096 (view UCSC Genome Browser custom track)
               

               Alignm length:
               416
               

               Alignm identity:
               296
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               96, 46
               

               Conread position:
               15-434
               

               Cow position:
               chr1:63435115-63434701 (view UCSC Genome Browser custom track)
               

               Alignm length:
               426
               

               Alignm identity:
               297
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               161, 93
               

               Conread position:
               15-434
               

               Cow position:
               chr1:82884697-82884290 (view UCSC Genome Browser custom track)
               

               Alignm length:
               422
               

               Alignm identity:
               301
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               330, 89
               

               Conread position:
               15-448
               

               Cow position:
               chr1:7739661-7740066 (view UCSC Genome Browser custom track)
               

               Alignm length:
               437
               

               Alignm identity:
               293
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               92, 41
               

               Conread position:
               15-449
               

               Cow position:
               chr1:42359945-42360408 (view UCSC Genome Browser custom track)
               

               Alignm length:
               465
               

               Alignm identity:
               322
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               44, 440
               

               Conread position:
               16-279
               

               Cow position:
               chr1:54732755-54732515 (view UCSC Genome Browser custom track)
               

               Alignm length:
               266
               

               Alignm identity:
               189
               

               Alignm E-value:
               7e-25
               

               Alignm gaps (pig, cow):
               93, 38
               

               Conread position:
               16-279
               

               Cow position:
               chr1:91733570-91733839 (view UCSC Genome Browser custom track)
               

               Alignm length:
               270
               

               Alignm identity:
               179
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               93, 0
               

               Conread position:
               16-284
               

               Cow position:
               chr1:26514662-26514392 (view UCSC Genome Browser custom track)
               

               Alignm length:
               271
               

               Alignm identity:
               171
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               94, 0
               

               Conread position:
               16-284
               

               Cow position:
               chr1:44136762-44136508 (view UCSC Genome Browser custom track)
               

               Alignm length:
               269
               

               Alignm identity:
               188
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               57, 0
               

               Conread position:
               16-288
               

               Cow position:
               chr1:81859538-81859266 (view UCSC Genome Browser custom track)
               

               Alignm length:
               278
               

               Alignm identity:
               195
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               159, 88
               

               Conread position:
               16-297
               

               Cow position:
               chr1:15311557-15311840 (view UCSC Genome Browser custom track)
               

               Alignm length:
               286
               

               Alignm identity:
               204
               

               Alignm E-value:
               6.02558e-44
               

               Alignm gaps (pig, cow):
               93, 174
               

               Conread position:
               16-300
               

               Cow position:
               chr1:80869795-80870089 (view UCSC Genome Browser custom track)
               

               Alignm length:
               296
               

               Alignm identity:
               202
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               93, 214
               

               Conread position:
               16-301
               

               Cow position:
               chr1:83982687-83982395 (view UCSC Genome Browser custom track)
               

               Alignm length:
               294
               

               Alignm identity:
               204
               

               Alignm E-value:
               9e-38
               

               Alignm gaps (pig, cow):
               94, 54
               

               Conread position:
               16-304
               

               Cow position:
               chr1:27495187-27495463 (view UCSC Genome Browser custom track)
               

               Alignm length:
               290
               

               Alignm identity:
               194
               

               Alignm E-value:
               9e-27
               

               Alignm gaps (pig, cow):
               63, 20
               

               Conread position:
               16-313
               

               Cow position:
               chr1:76851042-76850740 (view UCSC Genome Browser custom track)
               

               Alignm length:
               309
               

               Alignm identity:
               216
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               14, 141
               

               Conread position:
               16-346
               

               Cow position:
               chr1:68782970-68782621 (view UCSC Genome Browser custom track)
               

               Alignm length:
               354
               

               Alignm identity:
               234
               

               Alignm E-value:
               8e-26
               

               Alignm gaps (pig, cow):
               47, 109
               

               Conread position:
               16-354
               

               Cow position:
               chr1:78783235-78783572 (view UCSC Genome Browser custom track)
               

               Alignm length:
               342
               

               Alignm identity:
               242
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               93, 267
               

               Conread position:
               16-362
               

               Cow position:
               chr1:69866514-69866170 (view UCSC Genome Browser custom track)
               

               Alignm length:
               352
               

               Alignm identity:
               220
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               101, 246
               

               Conread position:
               16-364
               

               Cow position:
               chr1:9444151-9443815 (view UCSC Genome Browser custom track)
               

               Alignm length:
               356
               

               Alignm identity:
               246
               

               Alignm E-value:
               8e-37
               

               Alignm gaps (pig, cow):
               154, 65
               

               Conread position:
               16-364
               

               Cow position:
               chr1:17032647-17032298 (view UCSC Genome Browser custom track)
               

               Alignm length:
               355
               

               Alignm identity:
               224
               

               Alignm E-value:
               8e-26
               

               Alignm gaps (pig, cow):
               101, 275
               

               Conread position:
               16-366
               

               Cow position:
               chr1:3035301-3034963 (view UCSC Genome Browser custom track)
               

               Alignm length:
               354
               

               Alignm identity:
               246
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               93, 41
               

               Conread position:
               16-367
               

               Cow position:
               chr1:13404437-13404085 (view UCSC Genome Browser custom track)
               

               Alignm length:
               361
               

               Alignm identity:
               238
               

               Alignm E-value:
               5e-32
               

               Alignm gaps (pig, cow):
               101, 41
               

               Conread position:
               16-367
               

               Cow position:
               chr1:84447631-84447982 (view UCSC Genome Browser custom track)
               

               Alignm length:
               361
               

               Alignm identity:
               237
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               100, 250
               

               Conread position:
               16-369
               

               Cow position:
               chr1:43380334-43379985 (view UCSC Genome Browser custom track)
               

               Alignm length:
               359
               

               Alignm identity:
               263
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               93, 37
               

               Conread position:
               16-369
               

               Cow position:
               chr1:73561960-73561608 (view UCSC Genome Browser custom track)
               

               Alignm length:
               360
               

               Alignm identity:
               260
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               100, 74
               

               Conread position:
               16-373
               

               Cow position:
               chr1:21091209-21091568 (view UCSC Genome Browser custom track)
               

               Alignm length:
               368
               

               Alignm identity:
               239
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               101, 250
               

               Conread position:
               16-373
               

               Cow position:
               chr1:40578466-40578825 (view UCSC Genome Browser custom track)
               

               Alignm length:
               368
               

               Alignm identity:
               235
               

               Alignm E-value:
               7e-25
               

               Alignm gaps (pig, cow):
               99, 93
               

               Conread position:
               16-373
               

               Cow position:
               chr1:55163614-55163962 (view UCSC Genome Browser custom track)
               

               Alignm length:
               364
               

               Alignm identity:
               266
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               93, 45
               

               Conread position:
               16-373
               

               Cow position:
               chr1:60114719-60115078 (view UCSC Genome Browser custom track)
               

               Alignm length:
               367
               

               Alignm identity:
               238
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               82, 250
               

               Conread position:
               16-373
               

               Cow position:
               chr1:73433182-73432823 (view UCSC Genome Browser custom track)
               

               Alignm length:
               365
               

               Alignm identity:
               224
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               101, 276
               

               Conread position:
               16-373
               

               Cow position:
               chr1:81350138-81349777 (view UCSC Genome Browser custom track)
               

               Alignm length:
               368
               

               Alignm identity:
               239
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               97, 93
               

               Conread position:
               16-373
               

               Cow position:
               chr1:84556714-84556355 (view UCSC Genome Browser custom track)
               

               Alignm length:
               366
               

               Alignm identity:
               231
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               101, 295
               

               Conread position:
               16-373
               

               Cow position:
               chr1:86597505-86597863 (view UCSC Genome Browser custom track)
               

               Alignm length:
               366
               

               Alignm identity:
               230
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               85, 277
               

               Conread position:
               16-373
               

               Cow position:
               chr1:91674180-91674539 (view UCSC Genome Browser custom track)
               

               Alignm length:
               366
               

               Alignm identity:
               228
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               101, 295
               

               Conread position:
               16-384
               

               Cow position:
               chr1:100771045-100770698 (view UCSC Genome Browser custom track)
               

               Alignm length:
               374
               

               Alignm identity:
               257
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               9, 16
               

               Conread position:
               16-388
               

               Cow position:
               chr1:56719002-56719360 (view UCSC Genome Browser custom track)
               

               Alignm length:
               384
               

               Alignm identity:
               269
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               89, 122
               

               Conread position:
               16-391
               

               Cow position:
               chr1:61724331-61723958 (view UCSC Genome Browser custom track)
               

               Alignm length:
               388
               

               Alignm identity:
               273
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               93, 15
               

               Conread position:
               16-394
               

               Cow position:
               chr1:53595014-53595383 (view UCSC Genome Browser custom track)
               

               Alignm length:
               383
               

               Alignm identity:
               267
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               93, 177
               

               Conread position:
               16-397
               

               Cow position:
               chr1:4374649-4374270 (view UCSC Genome Browser custom track)
               

               Alignm length:
               385
               

               Alignm identity:
               281
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               91, 189
               

               Conread position:
               16-397
               

               Cow position:
               chr1:55135532-55135903 (view UCSC Genome Browser custom track)
               

               Alignm length:
               388
               

               Alignm identity:
               267
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               329, 54
               

               Conread position:
               16-397
               

               Cow position:
               chr1:91817082-91816704 (view UCSC Genome Browser custom track)
               

               Alignm length:
               389
               

               Alignm identity:
               283
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               93, 48
               

               Conread position:
               16-399
               

               Cow position:
               chr1:47544452-47544834 (view UCSC Genome Browser custom track)
               

               Alignm length:
               390
               

               Alignm identity:
               243
               

               Alignm E-value:
               8e-26
               

               Alignm gaps (pig, cow):
               62, 94
               

               Conread position:
               16-399
               

               Cow position:
               chr1:63596370-63595985 (view UCSC Genome Browser custom track)
               

               Alignm length:
               394
               

               Alignm identity:
               267
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               51, 8
               

               Conread position:
               16-399
               

               Cow position:
               chr1:71822231-71821839 (view UCSC Genome Browser custom track)
               

               Alignm length:
               394
               

               Alignm identity:
               249
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               87, 340
               

               Conread position:
               16-399
               

               Cow position:
               chr1:85361544-85361920 (view UCSC Genome Browser custom track)
               

               Alignm length:
               392
               

               Alignm identity:
               279
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               93, 241
               

               Conread position:
               16-399
               

               Cow position:
               chr1:86599044-86598662 (view UCSC Genome Browser custom track)
               

               Alignm length:
               394
               

               Alignm identity:
               247
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               89, 51
               

               Conread position:
               16-399
               

               Cow position:
               chr1:102647580-102647204 (view UCSC Genome Browser custom track)
               

               Alignm length:
               388
               

               Alignm identity:
               277
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               95, 174
               

               Conread position:
               16-408
               

               Cow position:
               chr1:46693967-46693575 (view UCSC Genome Browser custom track)
               

               Alignm length:
               401
               

               Alignm identity:
               269
               

               Alignm E-value:
               6.02558e-44
               

               Alignm gaps (pig, cow):
               98, 111
               

               Conread position:
               16-408
               

               Cow position:
               chr1:52753477-52753081 (view UCSC Genome Browser custom track)
               

               Alignm length:
               403
               

               Alignm identity:
               290
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               93, 254
               

               Conread position:
               16-408
               

               Cow position:
               chr1:70296957-70297357 (view UCSC Genome Browser custom track)
               

               Alignm length:
               408
               

               Alignm identity:
               283
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               72, 63
               

               Conread position:
               16-412
               

               Cow position:
               chr1:86113724-86113317 (view UCSC Genome Browser custom track)
               

               Alignm length:
               410
               

               Alignm identity:
               290
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               93, 143
               

               Conread position:
               16-412
               

               Cow position:
               chr1:92433710-92434083 (view UCSC Genome Browser custom track)
               

               Alignm length:
               401
               

               Alignm identity:
               262
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               93, 24
               

               Conread position:
               16-417
               

               Cow position:
               chr1:63391083-63390679 (view UCSC Genome Browser custom track)
               

               Alignm length:
               408
               

               Alignm identity:
               286
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               82, 94
               

               Conread position:
               16-418
               

               Cow position:
               chr1:85596635-85597027 (view UCSC Genome Browser custom track)
               

               Alignm length:
               408
               

               Alignm identity:
               296
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               64, 79
               

               Conread position:
               16-424
               

               Cow position:
               chr1:3323543-3323966 (view UCSC Genome Browser custom track)
               

               Alignm length:
               428
               

               Alignm identity:
               291
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               61, 45
               

               Conread position:
               16-424
               

               Cow position:
               chr1:90868749-90868346 (view UCSC Genome Browser custom track)
               

               Alignm length:
               415
               

               Alignm identity:
               309
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               53, 139
               

               Conread position:
               16-425
               

               Cow position:
               chr1:99808039-99807620 (view UCSC Genome Browser custom track)
               

               Alignm length:
               425
               

               Alignm identity:
               298
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               51, 134
               

               Conread position:
               16-432
               

               Cow position:
               chr1:21577496-21577911 (view UCSC Genome Browser custom track)
               

               Alignm length:
               426
               

               Alignm identity:
               289
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               95, 49
               

               Conread position:
               16-432
               

               Cow position:
               chr1:34300859-34300449 (view UCSC Genome Browser custom track)
               

               Alignm length:
               422
               

               Alignm identity:
               297
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               95, 174
               

               Conread position:
               16-434
               

               Cow position:
               chr1:26702508-26702102 (view UCSC Genome Browser custom track)
               

               Alignm length:
               422
               

               Alignm identity:
               300
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               186, 50
               

               Conread position:
               16-434
               

               Cow position:
               chr1:41696750-41697160 (view UCSC Genome Browser custom track)
               

               Alignm length:
               426
               

               Alignm identity:
               298
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               87, 63
               

               Conread position:
               16-434
               

               Cow position:
               chr1:51394099-51394523 (view UCSC Genome Browser custom track)
               

               Alignm length:
               439
               

               Alignm identity:
               319
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               43, 186
               

               Conread position:
               16-434
               

               Cow position:
               chr1:81228642-81228229 (view UCSC Genome Browser custom track)
               

               Alignm length:
               429
               

               Alignm identity:
               312
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               158, 88
               

               Conread position:
               16-434
               

               Cow position:
               chr1:81356014-81355598 (view UCSC Genome Browser custom track)
               

               Alignm length:
               424
               

               Alignm identity:
               309
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               94, 176
               

               Conread position:
               16-434
               

               Cow position:
               chr1:89834924-89835355 (view UCSC Genome Browser custom track)
               

               Alignm length:
               436
               

               Alignm identity:
               290
               

               Alignm E-value:
               4.99983e-42
               

               Alignm gaps (pig, cow):
               114, 290
               

               Conread position:
               16-434
               

               Cow position:
               chr1:91039470-91039069 (view UCSC Genome Browser custom track)
               

               Alignm length:
               421
               

               Alignm identity:
               273
               

               Alignm E-value:
               6e-34
               

               Alignm gaps (pig, cow):
               329, 88
               

               Conread position:
               16-439
               

               Cow position:
               chr1:6795243-6794816 (view UCSC Genome Browser custom track)
               

               Alignm length:
               438
               

               Alignm identity:
               309
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               99, 49
               

               Conread position:
               16-439
               

               Cow position:
               chr1:45289182-45288761 (view UCSC Genome Browser custom track)
               

               Alignm length:
               429
               

               Alignm identity:
               314
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               98, 49
               

               Conread position:
               16-440
               

               Cow position:
               chr1:100740976-100741389 (view UCSC Genome Browser custom track)
               

               Alignm length:
               436
               

               Alignm identity:
               302
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               45, 98
               

               Conread position:
               16-441
               

               Cow position:
               chr1:72035240-72034812 (view UCSC Genome Browser custom track)
               

               Alignm length:
               435
               

               Alignm identity:
               311
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               93, 115
               

               Conread position:
               16-443
               

               Cow position:
               chr1:37309821-37309405 (view UCSC Genome Browser custom track)
               

               Alignm length:
               436
               

               Alignm identity:
               312
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               21, 88
               

               Conread position:
               16-443
               

               Cow position:
               chr1:43822066-43822513 (view UCSC Genome Browser custom track)
               

               Alignm length:
               454
               

               Alignm identity:
               316
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               95, 314
               

               Conread position:
               16-443
               

               Cow position:
               chr1:100421534-100421934 (view UCSC Genome Browser custom track)
               

               Alignm length:
               432
               

               Alignm identity:
               292
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               33, 46
               

               Conread position:
               16-446
               

               Cow position:
               chr1:53424881-53425294 (view UCSC Genome Browser custom track)
               

               Alignm length:
               437
               

               Alignm identity:
               312
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               93, 49
               

               Conread position:
               16-447
               

               Cow position:
               chr1:22628950-22628532 (view UCSC Genome Browser custom track)
               

               Alignm length:
               438
               

               Alignm identity:
               287
               

               Alignm E-value:
               8e-36
               

               Alignm gaps (pig, cow):
               89, 142
               

               Conread position:
               16-447
               

               Cow position:
               chr1:45007155-45007586 (view UCSC Genome Browser custom track)
               

               Alignm length:
               443
               

               Alignm identity:
               308
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               95, 231
               

               Conread position:
               16-447
               

               Cow position:
               chr1:53374123-53374546 (view UCSC Genome Browser custom track)
               

               Alignm length:
               436
               

               Alignm identity:
               308
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               41, 159
               

               Conread position:
               16-447
               

               Cow position:
               chr1:73960389-73960818 (view UCSC Genome Browser custom track)
               

               Alignm length:
               440
               

               Alignm identity:
               306
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               77, 211
               

               Conread position:
               16-447
               

               Cow position:
               chr1:98551409-98551837 (view UCSC Genome Browser custom track)
               

               Alignm length:
               439
               

               Alignm identity:
               297
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               86, 37
               

               Conread position:
               16-447
               

               Cow position:
               chr1:99642674-99642251 (view UCSC Genome Browser custom track)
               

               Alignm length:
               439
               

               Alignm identity:
               316
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               93, 35
               

               Conread position:
               16-448
               

               Cow position:
               chr1:31348743-31348318 (view UCSC Genome Browser custom track)
               

               Alignm length:
               436
               

               Alignm identity:
               300
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               55, 44
               

               Conread position:
               16-448
               

               Cow position:
               chr1:53308703-53308275 (view UCSC Genome Browser custom track)
               

               Alignm length:
               441
               

               Alignm identity:
               322
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               95, 194
               

               Conread position:
               16-448
               

               Cow position:
               chr1:69695317-69694874 (view UCSC Genome Browser custom track)
               

               Alignm length:
               453
               

               Alignm identity:
               316
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               83, 38
               

               Conread position:
               16-448
               

               Cow position:
               chr1:76019991-76019578 (view UCSC Genome Browser custom track)
               

               Alignm length:
               437
               

               Alignm identity:
               312
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               63, 94
               

               Conread position:
               16-448
               

               Cow position:
               chr1:80336561-80336130 (view UCSC Genome Browser custom track)
               

               Alignm length:
               447
               

               Alignm identity:
               318
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               75, 99
               

               Conread position:
               16-448
               

               Cow position:
               chr1:97231665-97232079 (view UCSC Genome Browser custom track)
               

               Alignm length:
               438
               

               Alignm identity:
               288
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               95, 123
               

               Conread position:
               16-449
               

               Cow position:
               chr1:874332-874774 (view UCSC Genome Browser custom track)
               

               Alignm length:
               446
               

               Alignm identity:
               297
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               98, 131
               

               Conread position:
               16-449
               

               Cow position:
               chr1:36874707-36875146 (view UCSC Genome Browser custom track)
               

               Alignm length:
               450
               

               Alignm identity:
               310
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               93, 45
               

               Conread position:
               16-449
               

               Cow position:
               chr1:54258261-54258686 (view UCSC Genome Browser custom track)
               

               Alignm length:
               439
               

               Alignm identity:
               323
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               88, 38
               

               Conread position:
               16-449
               

               Cow position:
               chr1:55357591-55357175 (view UCSC Genome Browser custom track)
               

               Alignm length:
               437
               

               Alignm identity:
               311
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               93, 57
               

               Conread position:
               16-449
               

               Cow position:
               chr1:61005873-61005443 (view UCSC Genome Browser custom track)
               

               Alignm length:
               448
               

               Alignm identity:
               308
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               93, 45
               

               Conread position:
               16-449
               

               Cow position:
               chr1:84255443-84255887 (view UCSC Genome Browser custom track)
               

               Alignm length:
               448
               

               Alignm identity:
               303
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               46, 14
               

               Conread position:
               16-449
               

               Cow position:
               chr1:84282750-84283193 (view UCSC Genome Browser custom track)
               

               Alignm length:
               450
               

               Alignm identity:
               304
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               93, 296
               

               Conread position:
               16-452
               

               Cow position:
               chr1:89342300-89341857 (view UCSC Genome Browser custom track)
               

               Alignm length:
               449
               

               Alignm identity:
               301
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               295, 92
               

               Conread position:
               16-462
               

               Cow position:
               chr1:10719801-10719348 (view UCSC Genome Browser custom track)
               

               Alignm length:
               459
               

               Alignm identity:
               323
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               51, 214
               

               Conread position:
               16-466
               

               Cow position:
               chr1:31499316-31499761 (view UCSC Genome Browser custom track)
               

               Alignm length:
               456
               

               Alignm identity:
               335
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               93, 172
               

               Conread position:
               16-466
               

               Cow position:
               chr1:80988038-80988484 (view UCSC Genome Browser custom track)
               

               Alignm length:
               457
               

               Alignm identity:
               308
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               93, 51
               

               Conread position:
               16-471
               

               Cow position:
               chr1:11226556-11226107 (view UCSC Genome Browser custom track)
               

               Alignm length:
               464
               

               Alignm identity:
               324
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               91, 232
               

               Conread position:
               16-473
               

               Cow position:
               chr1:41735929-41735477 (view UCSC Genome Browser custom track)
               

               Alignm length:
               467
               

               Alignm identity:
               330
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               93, 29
               

               Conread position:
               16-473
               

               Cow position:
               chr1:80973934-80973465 (view UCSC Genome Browser custom track)
               

               Alignm length:
               477
               

               Alignm identity:
               336
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               51, 315
               

               Conread position:
               16-485
               

               Cow position:
               chr1:31414276-31413822 (view UCSC Genome Browser custom track)
               

               Alignm length:
               480
               

               Alignm identity:
               347
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               50, 183
               

               Conread position:
               16-485
               

               Cow position:
               chr1:88911206-88910745 (view UCSC Genome Browser custom track)
               

               Alignm length:
               480
               

               Alignm identity:
               339
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               71, 8
               

               Conread position:
               16-487
               

               Cow position:
               chr1:30441643-30442114 (view UCSC Genome Browser custom track)
               

               Alignm length:
               485
               

               Alignm identity:
               355
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               31, 89
               

               Conread position:
               16-498
               

               Cow position:
               chr1:54199691-54199207 (view UCSC Genome Browser custom track)
               

               Alignm length:
               491
               

               Alignm identity:
               342
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               206, 94
               

               Conread position:
               16-500
               

               Cow position:
               chr1:92963079-92963566 (view UCSC Genome Browser custom track)
               

               Alignm length:
               497
               

               Alignm identity:
               334
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               61, 213
               

               Conread position:
               16-503
               

               Cow position:
               chr1:41181531-41182028 (view UCSC Genome Browser custom track)
               

               Alignm length:
               506
               

               Alignm identity:
               341
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               89, 14
               

               Conread position:
               16-505
               

               Cow position:
               chr1:71135854-71136325 (view UCSC Genome Browser custom track)
               

               Alignm length:
               493
               

               Alignm identity:
               349
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               95, 48
               

               Conread position:
               16-505
               

               Cow position:
               chr1:100400509-100400010 (view UCSC Genome Browser custom track)
               

               Alignm length:
               506
               

               Alignm identity:
               337
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               95, 45
               

               Conread position:
               16-505
               

               Cow position:
               chr1:101634394-101634893 (view UCSC Genome Browser custom track)
               

               Alignm length:
               508
               

               Alignm identity:
               344
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               99, 29
               

               Conread position:
               16-506
               

               Cow position:
               chr1:34159524-34160023 (view UCSC Genome Browser custom track)
               

               Alignm length:
               510
               

               Alignm identity:
               362
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               95, 44
               

               Conread position:
               16-506
               

               Cow position:
               chr1:66356020-66355538 (view UCSC Genome Browser custom track)
               

               Alignm length:
               495
               

               Alignm identity:
               342
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               63, 155
               

               Conread position:
               16-506
               

               Cow position:
               chr1:81913460-81912979 (view UCSC Genome Browser custom track)
               

               Alignm length:
               500
               

               Alignm identity:
               349
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               93, 38
               

               Conread position:
               16-508
               

               Cow position:
               chr1:12871332-12870813 (view UCSC Genome Browser custom track)
               

               Alignm length:
               529
               

               Alignm identity:
               379
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               48, 190
               

               Conread position:
               16-508
               

               Cow position:
               chr1:19465748-19466233 (view UCSC Genome Browser custom track)
               

               Alignm length:
               505
               

               Alignm identity:
               350
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               45, 174
               

               Conread position:
               16-508
               

               Cow position:
               chr1:21678833-21679326 (view UCSC Genome Browser custom track)
               

               Alignm length:
               510
               

               Alignm identity:
               353
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               93, 5
               

               Conread position:
               16-508
               

               Cow position:
               chr1:28176703-28177177 (view UCSC Genome Browser custom track)
               

               Alignm length:
               505
               

               Alignm identity:
               337
               

               Alignm E-value:
               4.00001e-40
               

               Alignm gaps (pig, cow):
               95, 38
               

               Conread position:
               16-508
               

               Cow position:
               chr1:35162093-35162602 (view UCSC Genome Browser custom track)
               

               Alignm length:
               515
               

               Alignm identity:
               368
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               95, 304
               

               Conread position:
               16-508
               

               Cow position:
               chr1:46218270-46218747 (view UCSC Genome Browser custom track)
               

               Alignm length:
               498
               

               Alignm identity:
               358
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               58, 154
               

               Conread position:
               16-508
               

               Cow position:
               chr1:57119654-57119169 (view UCSC Genome Browser custom track)
               

               Alignm length:
               499
               

               Alignm identity:
               338
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               57, 38
               

               Conread position:
               16-508
               

               Cow position:
               chr1:61392104-61391599 (view UCSC Genome Browser custom track)
               

               Alignm length:
               514
               

               Alignm identity:
               353
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               49, 127
               

               Conread position:
               16-508
               

               Cow position:
               chr1:61564483-61564978 (view UCSC Genome Browser custom track)
               

               Alignm length:
               507
               

               Alignm identity:
               338
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               89, 38
               

               Conread position:
               16-508
               

               Cow position:
               chr1:69539386-69539882 (view UCSC Genome Browser custom track)
               

               Alignm length:
               510
               

               Alignm identity:
               354
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               61, 119
               

               Conread position:
               16-508
               

               Cow position:
               chr1:71045440-71045932 (view UCSC Genome Browser custom track)
               

               Alignm length:
               508
               

               Alignm identity:
               364
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               52, 212
               

               Conread position:
               16-508
               

               Cow position:
               chr1:72012117-72011625 (view UCSC Genome Browser custom track)
               

               Alignm length:
               509
               

               Alignm identity:
               350
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               51, 14
               

               Conread position:
               16-508
               

               Cow position:
               chr1:82378485-82378969 (view UCSC Genome Browser custom track)
               

               Alignm length:
               498
               

               Alignm identity:
               357
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               70, 44
               

               Conread position:
               16-508
               

               Cow position:
               chr1:82880354-82880828 (view UCSC Genome Browser custom track)
               

               Alignm length:
               502
               

               Alignm identity:
               350
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               93, 109
               

               Conread position:
               16-508
               

               Cow position:
               chr1:82936895-82936408 (view UCSC Genome Browser custom track)
               

               Alignm length:
               510
               

               Alignm identity:
               344
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               15, 160
               

               Conread position:
               16-508
               

               Cow position:
               chr1:91066459-91065960 (view UCSC Genome Browser custom track)
               

               Alignm length:
               509
               

               Alignm identity:
               361
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               82, 152
               

               Conread position:
               16-508
               

               Cow position:
               chr1:95176624-95177115 (view UCSC Genome Browser custom track)
               

               Alignm length:
               501
               

               Alignm identity:
               360
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               93, 209
               

               Conread position:
               16-508
               

               Cow position:
               chr1:100551651-100552163 (view UCSC Genome Browser custom track)
               

               Alignm length:
               520
               

               Alignm identity:
               357
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               47, 185
               

               Conread position:
               17-392
               

               Cow position:
               chr1:24235828-24235457 (view UCSC Genome Browser custom track)
               

               Alignm length:
               381
               

               Alignm identity:
               261
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               134, 93
               

               Conread position:
               17-404
               

               Cow position:
               chr1:44769419-44769034 (view UCSC Genome Browser custom track)
               

               Alignm length:
               392
               

               Alignm identity:
               290
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               265, 62
               

               Conread position:
               17-430
               

               Cow position:
               chr1:26943000-26943409 (view UCSC Genome Browser custom track)
               

               Alignm length:
               422
               

               Alignm identity:
               280
               

               Alignm E-value:
               4.00001e-40
               

               Alignm gaps (pig, cow):
               62, 40
               

               Conread position:
               17-443
               

               Cow position:
               chr1:41056373-41056792 (view UCSC Genome Browser custom track)
               

               Alignm length:
               432
               

               Alignm identity:
               301
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               5, 117
               

               Conread position:
               17-443
               

               Cow position:
               chr1:95215486-95215076 (view UCSC Genome Browser custom track)
               

               Alignm length:
               435
               

               Alignm identity:
               309
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               92, 12
               

               Conread position:
               17-448
               

               Cow position:
               chr1:69264512-69264927 (view UCSC Genome Browser custom track)
               

               Alignm length:
               434
               

               Alignm identity:
               315
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               94, 154
               

               Conread position:
               17-449
               

               Cow position:
               chr1:94226858-94226435 (view UCSC Genome Browser custom track)
               

               Alignm length:
               438
               

               Alignm identity:
               326
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               92, 171
               

               Conread position:
               17-455
               

               Cow position:
               chr1:102266581-102266143 (view UCSC Genome Browser custom track)
               

               Alignm length:
               451
               

               Alignm identity:
               306
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               46, 142
               

               Conread position:
               17-504
               

               Cow position:
               chr1:30066327-30066795 (view UCSC Genome Browser custom track)
               

               Alignm length:
               497
               

               Alignm identity:
               342
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               62, 156
               

               Conread position:
               17-504
               

               Cow position:
               chr1:31190414-31189941 (view UCSC Genome Browser custom track)
               

               Alignm length:
               495
               

               Alignm identity:
               347
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               98, 110
               

               Conread position:
               17-508
               

               Cow position:
               chr1:39418428-39417934 (view UCSC Genome Browser custom track)
               

               Alignm length:
               502
               

               Alignm identity:
               350
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               94, 149
               

               Conread position:
               18-287
               

               Cow position:
               chr1:21092783-21093053 (view UCSC Genome Browser custom track)
               

               Alignm length:
               273
               

               Alignm identity:
               191
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               91, 34
               

               Conread position:
               18-309
               

               Cow position:
               chr1:23634206-23633929 (view UCSC Genome Browser custom track)
               

               Alignm length:
               293
               

               Alignm identity:
               208
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               91, 36
               

               Conread position:
               18-363
               

               Cow position:
               chr1:22467619-22467968 (view UCSC Genome Browser custom track)
               

               Alignm length:
               354
               

               Alignm identity:
               257
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               61, 268
               

               Conread position:
               18-372
               

               Cow position:
               chr1:44164771-44165128 (view UCSC Genome Browser custom track)
               

               Alignm length:
               361
               

               Alignm identity:
               249
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               93, 47
               

               Conread position:
               18-403
               

               Cow position:
               chr1:21934488-21934100 (view UCSC Genome Browser custom track)
               

               Alignm length:
               400
               

               Alignm identity:
               285
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               77, 18
               

               Conread position:
               18-448
               

               Cow position:
               chr1:51968161-51968580 (view UCSC Genome Browser custom track)
               

               Alignm length:
               433
               

               Alignm identity:
               269
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               91, 127
               

               Conread position:
               18-449
               

               Cow position:
               chr1:72069136-72068714 (view UCSC Genome Browser custom track)
               

               Alignm length:
               437
               

               Alignm identity:
               306
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               91, 131
               

               Conread position:
               18-451
               

               Cow position:
               chr1:98360723-98360282 (view UCSC Genome Browser custom track)
               

               Alignm length:
               452
               

               Alignm identity:
               310
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               76, 279
               

               Conread position:
               18-497
               

               Cow position:
               chr1:7233009-7233474 (view UCSC Genome Browser custom track)
               

               Alignm length:
               488
               

               Alignm identity:
               323
               

               Alignm E-value:
               6.02558e-44
               

               Alignm gaps (pig, cow):
               141, 60
               

               Conread position:
               18-507
               

               Cow position:
               chr1:20099052-20099543 (view UCSC Genome Browser custom track)
               

               Alignm length:
               507
               

               Alignm identity:
               368
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               49, 214
               

               Conread position:
               18-508
               

               Cow position:
               chr1:61721676-61721210 (view UCSC Genome Browser custom track)
               

               Alignm length:
               499
               

               Alignm identity:
               334
               

               Alignm E-value:
               6.02558e-44
               

               Alignm gaps (pig, cow):
               51, 149
               

               Conread position:
               20-369
               

               Cow position:
               chr1:22448891-22448542 (view UCSC Genome Browser custom track)
               

               Alignm length:
               353
               

               Alignm identity:
               259
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               83, 89
               

               Conread position:
               20-434
               

               Cow position:
               chr1:53622661-53623060 (view UCSC Genome Browser custom track)
               

               Alignm length:
               418
               

               Alignm identity:
               295
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               92, 41
               

               Conread position:
               20-449
               

               Cow position:
               chr1:1877719-1878140 (view UCSC Genome Browser custom track)
               

               Alignm length:
               438
               

               Alignm identity:
               304
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 171
               

               Conread position:
               21-439
               

               Cow position:
               chr1:7350232-7350658 (view UCSC Genome Browser custom track)
               

               Alignm length:
               429
               

               Alignm identity:
               294
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               88, 204
               

               Conread position:
               21-449
               

               Cow position:
               chr1:74822144-74822571 (view UCSC Genome Browser custom track)
               

               Alignm length:
               444
               

               Alignm identity:
               307
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               57, 44
               

               Conread position:
               21-506
               

               Cow position:
               chr1:21787017-21787519 (view UCSC Genome Browser custom track)
               

               Alignm length:
               504
               

               Alignm identity:
               369
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               46, 208
               

               Conread position:
               22-447
               

               Cow position:
               chr1:36613580-36613142 (view UCSC Genome Browser custom track)
               

               Alignm length:
               440
               

               Alignm identity:
               297
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               89, 199
               

               Conread position:
               22-508
               

               Cow position:
               chr1:20001056-20000559 (view UCSC Genome Browser custom track)
               

               Alignm length:
               507
               

               Alignm identity:
               362
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               47, 15
               

               Conread position:
               22-508
               

               Cow position:
               chr1:35170032-35170505 (view UCSC Genome Browser custom track)
               

               Alignm length:
               493
               

               Alignm identity:
               341
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               85, 200
               

               Conread position:
               23-508
               

               Cow position:
               chr1:63504037-63504511 (view UCSC Genome Browser custom track)
               

               Alignm length:
               491
               

               Alignm identity:
               359
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               88, 45
               

               Conread position:
               24-471
               

               Cow position:
               chr1:8319-8755 (view UCSC Genome Browser custom track)
               

               Alignm length:
               452
               

               Alignm identity:
               305
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               85, 163
               

               Conread position:
               26-434
               

               Cow position:
               chr1:89349676-89350070 (view UCSC Genome Browser custom track)
               

               Alignm length:
               413
               

               Alignm identity:
               296
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               83, 129
               

               Conread position:
               27-440
               

               Cow position:
               chr1:31934213-31934618 (view UCSC Genome Browser custom track)
               

               Alignm length:
               420
               

               Alignm identity:
               283
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               87, 162
               

               Conread position:
               27-440
               

               Cow position:
               chr1:66138020-66138429 (view UCSC Genome Browser custom track)
               

               Alignm length:
               423
               

               Alignm identity:
               275
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               82, 40
               

               Conread position:
               27-475
               

               Cow position:
               chr1:48731124-48730687 (view UCSC Genome Browser custom track)
               

               Alignm length:
               458
               

               Alignm identity:
               319
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               87, 38
               

               Conread position:
               27-504
               

               Cow position:
               chr1:77720527-77720067 (view UCSC Genome Browser custom track)
               

               Alignm length:
               486
               

               Alignm identity:
               334
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               61, 65
               

               Conread position:
               29-350
               

               Cow position:
               chr1:73522440-73522127 (view UCSC Genome Browser custom track)
               

               Alignm length:
               329
               

               Alignm identity:
               221
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               31, 81
               

               Conread position:
               29-504
               

               Cow position:
               chr1:26688776-26688298 (view UCSC Genome Browser custom track)
               

               Alignm length:
               484
               

               Alignm identity:
               338
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               43, 31
               

               Conread position:
               30-301
               

               Cow position:
               chr1:101547339-101547059 (view UCSC Genome Browser custom track)
               

               Alignm length:
               282
               

               Alignm identity:
               193
               

               Alignm E-value:
               5e-33
               

               Alignm gaps (pig, cow):
               79, 271
               

               Conread position:
               30-408
               

               Cow position:
               chr1:94875975-94875595 (view UCSC Genome Browser custom track)
               

               Alignm length:
               386
               

               Alignm identity:
               247
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               81, 137
               

               Conread position:
               30-426
               

               Cow position:
               chr1:87888109-87888482 (view UCSC Genome Browser custom track)
               

               Alignm length:
               403
               

               Alignm identity:
               276
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               79, 31
               

               Conread position:
               30-432
               

               Cow position:
               chr1:15037036-15037428 (view UCSC Genome Browser custom track)
               

               Alignm length:
               410
               

               Alignm identity:
               265
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               69, 80
               

               Conread position:
               31-434
               

               Cow position:
               chr1:25383366-25383773 (view UCSC Genome Browser custom track)
               

               Alignm length:
               411
               

               Alignm identity:
               284
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               55, 36
               

               Conread position:
               31-449
               

               Cow position:
               chr1:81613089-81613509 (view UCSC Genome Browser custom track)
               

               Alignm length:
               427
               

               Alignm identity:
               301
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               72, 194
               

               Conread position:
               32-284
               

               Cow position:
               chr1:24528892-24528650 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               182
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               79, 33
               

               Conread position:
               32-383
               

               Cow position:
               chr1:77132309-77132663 (view UCSC Genome Browser custom track)
               

               Alignm length:
               365
               

               Alignm identity:
               251
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               32, 81
               

               Conread position:
               33-449
               

               Cow position:
               chr1:29627209-29626793 (view UCSC Genome Browser custom track)
               

               Alignm length:
               427
               

               Alignm identity:
               292
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               78, 159
               

               Conread position:
               34-312
               

               Cow position:
               chr1:34000612-34000896 (view UCSC Genome Browser custom track)
               

               Alignm length:
               287
               

               Alignm identity:
               204
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               75, 270
               

               Conread position:
               34-397
               

               Cow position:
               chr1:1991723-1991351 (view UCSC Genome Browser custom track)
               

               Alignm length:
               376
               

               Alignm identity:
               273
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               43, 196
               

               Conread position:
               35-426
               

               Cow position:
               chr1:90640733-90641125 (view UCSC Genome Browser custom track)
               

               Alignm length:
               401
               

               Alignm identity:
               279
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               76, 340
               

               Conread position:
               36-307
               

               Cow position:
               chr1:50634706-50634420 (view UCSC Genome Browser custom track)
               

               Alignm length:
               288
               

               Alignm identity:
               213
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               27, 199
               

               Conread position:
               39-293
               

               Cow position:
               chr1:95327444-95327184 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               186
               

               Alignm E-value:
               5e-33
               

               Alignm gaps (pig, cow):
               7, 191
               

               Conread position:
               46-449
               

               Cow position:
               chr1:1956611-1956215 (view UCSC Genome Browser custom track)
               

               Alignm length:
               410
               

               Alignm identity:
               290
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               22, 177
               

               Conread position:
               46-452
               

               Cow position:
               chr1:72286330-72285945 (view UCSC Genome Browser custom track)
               

               Alignm length:
               410
               

               Alignm identity:
               287
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               65, 127
               

               Conread position:
               49-449
               

               Cow position:
               chr1:21954500-21954104 (view UCSC Genome Browser custom track)
               

               Alignm length:
               415
               

               Alignm identity:
               280
               

               Alignm E-value:
               9e-38
               

               Alignm gaps (pig, cow):
               30, 176
               

               Conread position:
               50-426
               

               Cow position:
               chr1:74939920-74940297 (view UCSC Genome Browser custom track)
               

               Alignm length:
               383
               

               Alignm identity:
               236
               

               Alignm E-value:
               7e-25
               

               Alignm gaps (pig, cow):
               124, 253
               

               Conread position:
               54-293
               

               Cow position:
               chr1:56711895-56711652 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               180
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               7, 61
               

               Conread position:
               54-299
               

               Cow position:
               chr1:78689660-78689909 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               180
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               44, 109
               

               Conread position:
               55-308
               

               Cow position:
               chr1:49839233-49839487 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               184
               

               Alignm E-value:
               9e-38
               

               Alignm gaps (pig, cow):
               11, 174
               

               Conread position:
               55-435
               

               Cow position:
               chr1:16855960-16855593 (view UCSC Genome Browser custom track)
               

               Alignm length:
               383
               

               Alignm identity:
               281
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               294, 53
               

               Conread position:
               55-448
               

               Cow position:
               chr1:84240628-84240999 (view UCSC Genome Browser custom track)
               

               Alignm length:
               397
               

               Alignm identity:
               274
               

               Alignm E-value:
               4.99983e-42
               

               Alignm gaps (pig, cow):
               56, 118
               

               Conread position:
               55-449
               

               Cow position:
               chr1:4032364-4032752 (view UCSC Genome Browser custom track)
               

               Alignm length:
               402
               

               Alignm identity:
               288
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               54, 16
               

               Conread position:
               57-434
               

               Cow position:
               chr1:39510311-39509953 (view UCSC Genome Browser custom track)
               

               Alignm length:
               382
               

               Alignm identity:
               250
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               109, 9
               

               Conread position:
               57-448
               

               Cow position:
               chr1:73196510-73196110 (view UCSC Genome Browser custom track)
               

               Alignm length:
               408
               

               Alignm identity:
               286
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               50, 173
               

               Conread position:
               57-508
               

               Cow position:
               chr1:46940132-46939680 (view UCSC Genome Browser custom track)
               

               Alignm length:
               466
               

               Alignm identity:
               307
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               57, 190
               

               Conread position:
               60-364
               

               Cow position:
               chr1:102826080-102825785 (view UCSC Genome Browser custom track)
               

               Alignm length:
               306
               

               Alignm identity:
               202
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               51, 113
               

               Conread position:
               60-505
               

               Cow position:
               chr1:25793708-25793264 (view UCSC Genome Browser custom track)
               

               Alignm length:
               455
               

               Alignm identity:
               322
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               6, 184
               

               Conread position:
               64-306
               

               Cow position:
               chr1:81363729-81363970 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               184
               

               Alignm E-value:
               9e-27
               

               Alignm gaps (pig, cow):
               11, 48
               

               Conread position:
               64-312
               

               Cow position:
               chr1:14379794-14379548 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               190
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               11, 78
               

               Conread position:
               64-449
               

               Cow position:
               chr1:50931230-50930859 (view UCSC Genome Browser custom track)
               

               Alignm length:
               389
               

               Alignm identity:
               270
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               45, 15
               

               Conread position:
               65-318
               

               Cow position:
               chr1:77657804-77658059 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               188
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               46, 158
               

               Conread position:
               65-399
               

               Cow position:
               chr1:96478432-96478769 (view UCSC Genome Browser custom track)
               

               Alignm length:
               345
               

               Alignm identity:
               243
               

               Alignm E-value:
               5.00264e-43
               

               Alignm gaps (pig, cow):
               14, 107
               

               Conread position:
               65-449
               

               Cow position:
               chr1:52994762-52995146 (view UCSC Genome Browser custom track)
               

               Alignm length:
               394
               

               Alignm identity:
               272
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               46, 159
               

               Conread position:
               65-504
               

               Cow position:
               chr1:80764797-80764361 (view UCSC Genome Browser custom track)
               

               Alignm length:
               443
               

               Alignm identity:
               312
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               44, 156
               

               Conread position:
               65-508
               

               Cow position:
               chr1:39427243-39426820 (view UCSC Genome Browser custom track)
               

               Alignm length:
               453
               

               Alignm identity:
               322
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               46, 108
               

               Conread position:
               66-310
               

               Cow position:
               chr1:84116141-84116380 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               169
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               45, 89
               

               Conread position:
               66-318
               

               Cow position:
               chr1:55202875-55202630 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               179
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               246, 49
               

               Conread position:
               66-426
               

               Cow position:
               chr1:55146540-55146895 (view UCSC Genome Browser custom track)
               

               Alignm length:
               369
               

               Alignm identity:
               274
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               43, 142
               

               Conread position:
               66-427
               

               Cow position:
               chr1:69540020-69540380 (view UCSC Genome Browser custom track)
               

               Alignm length:
               386
               

               Alignm identity:
               262
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               11, 176
               

               Conread position:
               66-434
               

               Cow position:
               chr1:80899847-80900224 (view UCSC Genome Browser custom track)
               

               Alignm length:
               382
               

               Alignm identity:
               262
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               48, 164
               

               Conread position:
               66-443
               

               Cow position:
               chr1:82338046-82337666 (view UCSC Genome Browser custom track)
               

               Alignm length:
               388
               

               Alignm identity:
               282
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               34, 69
               

               Conread position:
               66-448
               

               Cow position:
               chr1:48580869-48581247 (view UCSC Genome Browser custom track)
               

               Alignm length:
               390
               

               Alignm identity:
               273
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               37, 109
               

               Conread position:
               66-449
               

               Cow position:
               chr1:39069214-39068836 (view UCSC Genome Browser custom track)
               

               Alignm length:
               390
               

               Alignm identity:
               284
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               11, 107
               

               Conread position:
               66-449
               

               Cow position:
               chr1:41252664-41252290 (view UCSC Genome Browser custom track)
               

               Alignm length:
               394
               

               Alignm identity:
               275
               

               Alignm E-value:
               5.60519e-45
               

               Alignm gaps (pig, cow):
               43, 157
               

               Conread position:
               66-473
               

               Cow position:
               chr1:11020774-11021164 (view UCSC Genome Browser custom track)
               

               Alignm length:
               417
               

               Alignm identity:
               296
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               43, 158
               

               Conread position:
               66-508
               

               Cow position:
               chr1:10064240-10063808 (view UCSC Genome Browser custom track)
               

               Alignm length:
               451
               

               Alignm identity:
               317
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 160
               

               Conread position:
               66-508
               

               Cow position:
               chr1:54478061-54478513 (view UCSC Genome Browser custom track)
               

               Alignm length:
               454
               

               Alignm identity:
               328
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               33, 158
               

               Conread position:
               66-508
               

               Cow position:
               chr1:56643849-56643426 (view UCSC Genome Browser custom track)
               

               Alignm length:
               449
               

               Alignm identity:
               300
               

               Alignm E-value:
               4.99983e-42
               

               Alignm gaps (pig, cow):
               43, 7
               

               Conread position:
               67-419
               

               Cow position:
               chr1:92642697-92642359 (view UCSC Genome Browser custom track)
               

               Alignm length:
               358
               

               Alignm identity:
               250
               

               Alignm E-value:
               4.00001e-40
               

               Alignm gaps (pig, cow):
               100, 27
               

               Conread position:
               67-449
               

               Cow position:
               chr1:4290898-4291284 (view UCSC Genome Browser custom track)
               

               Alignm length:
               390
               

               Alignm identity:
               272
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               25, 310
               

               Conread position:
               67-449
               

               Cow position:
               chr1:38278305-38277909 (view UCSC Genome Browser custom track)
               

               Alignm length:
               400
               

               Alignm identity:
               274
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               42, 236
               

               Conread position:
               67-482
               

               Cow position:
               chr1:31390844-31390435 (view UCSC Genome Browser custom track)
               

               Alignm length:
               422
               

               Alignm identity:
               304
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               49, 29
               

               Conread position:
               67-506
               

               Cow position:
               chr1:31871160-31871604 (view UCSC Genome Browser custom track)
               

               Alignm length:
               456
               

               Alignm identity:
               314
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 159
               

               Conread position:
               68-508
               

               Cow position:
               chr1:46839335-46839786 (view UCSC Genome Browser custom track)
               

               Alignm length:
               456
               

               Alignm identity:
               311
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               41, 262
               

               Conread position:
               70-311
               

               Cow position:
               chr1:33701863-33702103 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               171
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               46, 104
               

               Conread position:
               70-397
               

               Cow position:
               chr1:60707146-60707470 (view UCSC Genome Browser custom track)
               

               Alignm length:
               335
               

               Alignm identity:
               231
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               41, 166
               

               Conread position:
               70-414
               

               Cow position:
               chr1:79165349-79164998 (view UCSC Genome Browser custom track)
               

               Alignm length:
               355
               

               Alignm identity:
               262
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               35, 234
               

               Conread position:
               70-423
               

               Cow position:
               chr1:30413328-30413684 (view UCSC Genome Browser custom track)
               

               Alignm length:
               369
               

               Alignm identity:
               256
               

               Alignm E-value:
               4.00001e-41
               

               Alignm gaps (pig, cow):
               46, 128
               

               Conread position:
               70-432
               

               Cow position:
               chr1:16767342-16766986 (view UCSC Genome Browser custom track)
               

               Alignm length:
               370
               

               Alignm identity:
               247
               

               Alignm E-value:
               6e-34
               

               Alignm gaps (pig, cow):
               39, 155
               

               Conread position:
               70-440
               

               Cow position:
               chr1:57297239-57297591 (view UCSC Genome Browser custom track)
               

               Alignm length:
               376
               

               Alignm identity:
               263
               

               Alignm E-value:
               4.99983e-42
               

               Alignm gaps (pig, cow):
               145, 24
               

               Conread position:
               70-447
               

               Cow position:
               chr1:43505266-43505647 (view UCSC Genome Browser custom track)
               

               Alignm length:
               387
               

               Alignm identity:
               277
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               39, 97
               

               Conread position:
               70-447
               

               Cow position:
               chr1:68619194-68618815 (view UCSC Genome Browser custom track)
               

               Alignm length:
               389
               

               Alignm identity:
               274
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               29, 57
               

               Conread position:
               70-447
               

               Cow position:
               chr1:76470402-76470761 (view UCSC Genome Browser custom track)
               

               Alignm length:
               382
               

               Alignm identity:
               266
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               39, 94
               

               Conread position:
               70-447
               

               Cow position:
               chr1:84812193-84811821 (view UCSC Genome Browser custom track)
               

               Alignm length:
               386
               

               Alignm identity:
               261
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               39, 12
               

               Conread position:
               70-506
               

               Cow position:
               chr1:22777808-22777367 (view UCSC Genome Browser custom track)
               

               Alignm length:
               448
               

               Alignm identity:
               309
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               39, 158
               

               Conread position:
               70-508
               

               Cow position:
               chr1:23099640-23100079 (view UCSC Genome Browser custom track)
               

               Alignm length:
               447
               

               Alignm identity:
               316
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               21, 161
               

               Conread position:
               70-508
               

               Cow position:
               chr1:42555013-42555440 (view UCSC Genome Browser custom track)
               

               Alignm length:
               442
               

               Alignm identity:
               338
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               41, 84
               

               Conread position:
               71-300
               

               Cow position:
               chr1:52506800-52506581 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               166
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               46, 94
               

               Conread position:
               71-311
               

               Cow position:
               chr1:80555435-80555210 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               180
               

               Alignm E-value:
               6e-34
               

               Alignm gaps (pig, cow):
               182, 37
               

               Conread position:
               71-338
               

               Cow position:
               chr1:78794991-78794729 (view UCSC Genome Browser custom track)
               

               Alignm length:
               274
               

               Alignm identity:
               200
               

               Alignm E-value:
               9e-38
               

               Alignm gaps (pig, cow):
               18, 41
               

               Conread position:
               71-342
               

               Cow position:
               chr1:56408357-56408630 (view UCSC Genome Browser custom track)
               

               Alignm length:
               279
               

               Alignm identity:
               192
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               38, 179
               

               Conread position:
               71-364
               

               Cow position:
               chr1:32244655-32244361 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               202
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               53, 38
               

               Conread position:
               71-383
               

               Cow position:
               chr1:49131378-49131057 (view UCSC Genome Browser custom track)
               

               Alignm length:
               324
               

               Alignm identity:
               230
               

               Alignm E-value:
               5.60519e-45
               

               Alignm gaps (pig, cow):
               36, 260
               

               Conread position:
               71-386
               

               Cow position:
               chr1:57264242-57263940 (view UCSC Genome Browser custom track)
               

               Alignm length:
               318
               

               Alignm identity:
               238
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               41, 99
               

               Conread position:
               71-445
               

               Cow position:
               chr1:85774203-85774573 (view UCSC Genome Browser custom track)
               

               Alignm length:
               381
               

               Alignm identity:
               252
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               38, 151
               

               Conread position:
               71-447
               

               Cow position:
               chr1:72141308-72141690 (view UCSC Genome Browser custom track)
               

               Alignm length:
               391
               

               Alignm identity:
               269
               

               Alignm E-value:
               6.02558e-44
               

               Alignm gaps (pig, cow):
               38, 99
               

               Conread position:
               71-448
               

               Cow position:
               chr1:6941210-6941587 (view UCSC Genome Browser custom track)
               

               Alignm length:
               389
               

               Alignm identity:
               280
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               40, 155
               

               Conread position:
               71-448
               

               Cow position:
               chr1:6958623-6959000 (view UCSC Genome Browser custom track)
               

               Alignm length:
               389
               

               Alignm identity:
               280
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               40, 155
               

               Conread position:
               71-448
               

               Cow position:
               chr1:75744604-75744981 (view UCSC Genome Browser custom track)
               

               Alignm length:
               382
               

               Alignm identity:
               269
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 156
               

               Conread position:
               71-451
               

               Cow position:
               chr1:93810187-93810551 (view UCSC Genome Browser custom track)
               

               Alignm length:
               385
               

               Alignm identity:
               272
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               41, 23
               

               Conread position:
               71-466
               

               Cow position:
               chr1:5162309-5161918 (view UCSC Genome Browser custom track)
               

               Alignm length:
               405
               

               Alignm identity:
               279
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 88
               

               Conread position:
               71-466
               

               Cow position:
               chr1:81868983-81868597 (view UCSC Genome Browser custom track)
               

               Alignm length:
               402
               

               Alignm identity:
               283
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 107
               

               Conread position:
               71-504
               

               Cow position:
               chr1:100324982-100324565 (view UCSC Genome Browser custom track)
               

               Alignm length:
               449
               

               Alignm identity:
               303
               

               Alignm E-value:
               7e-35
               

               Alignm gaps (pig, cow):
               38, 84
               

               Conread position:
               71-506
               

               Cow position:
               chr1:95765345-95764917 (view UCSC Genome Browser custom track)
               

               Alignm length:
               444
               

               Alignm identity:
               310
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               44, 155
               

               Conread position:
               71-508
               

               Cow position:
               chr1:34685939-34686362 (view UCSC Genome Browser custom track)
               

               Alignm length:
               449
               

               Alignm identity:
               316
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               44, 149
               

               Conread position:
               71-508
               

               Cow position:
               chr1:64302488-64302053 (view UCSC Genome Browser custom track)
               

               Alignm length:
               454
               

               Alignm identity:
               308
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               279, 98
               

               Conread position:
               71-508
               

               Cow position:
               chr1:70534190-70533760 (view UCSC Genome Browser custom track)
               

               Alignm length:
               442
               

               Alignm identity:
               322
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 151
               

               Conread position:
               71-508
               

               Cow position:
               chr1:93110881-93110435 (view UCSC Genome Browser custom track)
               

               Alignm length:
               449
               

               Alignm identity:
               323
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               34, 154
               

               Conread position:
               72-286
               

               Cow position:
               chr1:61246406-61246199 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               147
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               41, 0
               

               Conread position:
               73-423
               

               Cow position:
               chr1:6939893-6939542 (view UCSC Genome Browser custom track)
               

               Alignm length:
               355
               

               Alignm identity:
               246
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               43, 160
               

               Conread position:
               73-425
               

               Cow position:
               chr1:34856883-34856532 (view UCSC Genome Browser custom track)
               

               Alignm length:
               362
               

               Alignm identity:
               256
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 82
               

               Conread position:
               73-506
               

               Cow position:
               chr1:53039953-53039533 (view UCSC Genome Browser custom track)
               

               Alignm length:
               439
               

               Alignm identity:
               303
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               36, 50
               

               Conread position:
               73-506
               

               Cow position:
               chr1:68827159-68826729 (view UCSC Genome Browser custom track)
               

               Alignm length:
               446
               

               Alignm identity:
               308
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 230
               

               Conread position:
               73-508
               

               Cow position:
               chr1:61736849-61737274 (view UCSC Genome Browser custom track)
               

               Alignm length:
               439
               

               Alignm identity:
               298
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               259, 99
               

               Conread position:
               74-432
               

               Cow position:
               chr1:33997165-33996822 (view UCSC Genome Browser custom track)
               

               Alignm length:
               367
               

               Alignm identity:
               248
               

               Alignm E-value:
               5e-32
               

               Alignm gaps (pig, cow):
               37, 145
               

               Conread position:
               74-452
               

               Cow position:
               chr1:78810783-78811162 (view UCSC Genome Browser custom track)
               

               Alignm length:
               387
               

               Alignm identity:
               256
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               37, 150
               

               Conread position:
               75-413
               

               Cow position:
               chr1:68951380-68951709 (view UCSC Genome Browser custom track)
               

               Alignm length:
               343
               

               Alignm identity:
               236
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               36, 15
               

               Conread position:
               75-446
               

               Cow position:
               chr1:36931907-36932271 (view UCSC Genome Browser custom track)
               

               Alignm length:
               375
               

               Alignm identity:
               272
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               34, 93
               

               Conread position:
               75-451
               

               Cow position:
               chr1:10632801-10633167 (view UCSC Genome Browser custom track)
               

               Alignm length:
               381
               

               Alignm identity:
               258
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               24, 119
               

               Conread position:
               75-508
               

               Cow position:
               chr1:78791559-78791130 (view UCSC Genome Browser custom track)
               

               Alignm length:
               442
               

               Alignm identity:
               325
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               24, 126
               

               Conread position:
               76-335
               

               Cow position:
               chr1:50679537-50679275 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               177
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               33, 229
               

               Conread position:
               76-449
               

               Cow position:
               chr1:78857573-78857209 (view UCSC Genome Browser custom track)
               

               Alignm length:
               379
               

               Alignm identity:
               268
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               35, 146
               

               Conread position:
               76-505
               

               Cow position:
               chr1:42138614-42139033 (view UCSC Genome Browser custom track)
               

               Alignm length:
               436
               

               Alignm identity:
               293
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               29, 133
               

               Conread position:
               76-508
               

               Cow position:
               chr1:37322256-37321813 (view UCSC Genome Browser custom track)
               

               Alignm length:
               450
               

               Alignm identity:
               312
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               33, 148
               

               Conread position:
               77-294
               

               Cow position:
               chr1:98708192-98708408 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               155
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               32, 105
               

               Conread position:
               77-303
               

               Cow position:
               chr1:19998285-19998065 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               161
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               34, 143
               

               Conread position:
               77-346
               

               Cow position:
               chr1:3776864-3776604 (view UCSC Genome Browser custom track)
               

               Alignm length:
               272
               

               Alignm identity:
               189
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               32, 123
               

               Conread position:
               77-383
               

               Cow position:
               chr1:45535452-45535760 (view UCSC Genome Browser custom track)
               

               Alignm length:
               313
               

               Alignm identity:
               229
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               32, 148
               

               Conread position:
               77-397
               

               Cow position:
               chr1:1165350-1165666 (view UCSC Genome Browser custom track)
               

               Alignm length:
               329
               

               Alignm identity:
               239
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               22, 170
               

               Conread position:
               77-443
               

               Cow position:
               chr1:37707219-37706863 (view UCSC Genome Browser custom track)
               

               Alignm length:
               376
               

               Alignm identity:
               265
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               41, 149
               

               Conread position:
               77-449
               

               Cow position:
               chr1:74084439-74084071 (view UCSC Genome Browser custom track)
               

               Alignm length:
               379
               

               Alignm identity:
               265
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               151, 32
               

               Conread position:
               77-482
               

               Cow position:
               chr1:29975847-29975454 (view UCSC Genome Browser custom track)
               

               Alignm length:
               408
               

               Alignm identity:
               283
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 96
               

               Conread position:
               77-505
               

               Cow position:
               chr1:19482324-19481906 (view UCSC Genome Browser custom track)
               

               Alignm length:
               435
               

               Alignm identity:
               293
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               28, 100
               

               Conread position:
               77-505
               

               Cow position:
               chr1:74947367-74946945 (view UCSC Genome Browser custom track)
               

               Alignm length:
               437
               

               Alignm identity:
               311
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               97, 47
               

               Conread position:
               79-343
               

               Cow position:
               chr1:75967188-75967443 (view UCSC Genome Browser custom track)
               

               Alignm length:
               267
               

               Alignm identity:
               195
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               30, 84
               

               Conread position:
               79-408
               

               Cow position:
               chr1:1185491-1185808 (view UCSC Genome Browser custom track)
               

               Alignm length:
               334
               

               Alignm identity:
               228
               

               Alignm E-value:
               6e-34
               

               Alignm gaps (pig, cow):
               30, 155
               

               Conread position:
               79-421
               

               Cow position:
               chr1:5023988-5023670 (view UCSC Genome Browser custom track)
               

               Alignm length:
               348
               

               Alignm identity:
               246
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               23, 90
               

               Conread position:
               79-442
               

               Cow position:
               chr1:89485343-89485693 (view UCSC Genome Browser custom track)
               

               Alignm length:
               370
               

               Alignm identity:
               263
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               43, 29
               

               Conread position:
               79-449
               

               Cow position:
               chr1:24534491-24534137 (view UCSC Genome Browser custom track)
               

               Alignm length:
               375
               

               Alignm identity:
               261
               

               Alignm E-value:
               5.00264e-43
               

               Alignm gaps (pig, cow):
               30, 66
               

               Conread position:
               79-449
               

               Cow position:
               chr1:47233723-47233358 (view UCSC Genome Browser custom track)
               

               Alignm length:
               375
               

               Alignm identity:
               256
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               22, 95
               

               Conread position:
               79-497
               

               Cow position:
               chr1:93528442-93528880 (view UCSC Genome Browser custom track)
               

               Alignm length:
               445
               

               Alignm identity:
               322
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               30, 224
               

               Conread position:
               79-508
               

               Cow position:
               chr1:3924042-3923607 (view UCSC Genome Browser custom track)
               

               Alignm length:
               448
               

               Alignm identity:
               310
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               30, 65
               

               Conread position:
               80-368
               

               Cow position:
               chr1:3244603-3244889 (view UCSC Genome Browser custom track)
               

               Alignm length:
               296
               

               Alignm identity:
               223
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               29, 144
               

               Conread position:
               80-431
               

               Cow position:
               chr1:3137686-3138016 (view UCSC Genome Browser custom track)
               

               Alignm length:
               357
               

               Alignm identity:
               249
               

               Alignm E-value:
               9e-38
               

               Alignm gaps (pig, cow):
               29, 43
               

               Conread position:
               80-508
               

               Cow position:
               chr1:56477348-56477782 (view UCSC Genome Browser custom track)
               

               Alignm length:
               443
               

               Alignm identity:
               317
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               31, 90
               

               Conread position:
               81-307
               

               Cow position:
               chr1:63905720-63905490 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               176
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               28, 68
               

               Conread position:
               81-447
               

               Cow position:
               chr1:45555116-45555483 (view UCSC Genome Browser custom track)
               

               Alignm length:
               373
               

               Alignm identity:
               257
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               44, 142
               

               Conread position:
               81-447
               

               Cow position:
               chr1:102105488-102105852 (view UCSC Genome Browser custom track)
               

               Alignm length:
               377
               

               Alignm identity:
               243
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               36, 85
               

               Conread position:
               81-449
               

               Cow position:
               chr1:98594325-98594685 (view UCSC Genome Browser custom track)
               

               Alignm length:
               375
               

               Alignm identity:
               263
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               30, 110
               

               Conread position:
               81-508
               

               Cow position:
               chr1:59650020-59650448 (view UCSC Genome Browser custom track)
               

               Alignm length:
               434
               

               Alignm identity:
               307
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               28, 72
               

               Conread position:
               82-448
               

               Cow position:
               chr1:71119266-71119638 (view UCSC Genome Browser custom track)
               

               Alignm length:
               377
               

               Alignm identity:
               262
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               27, 83
               

               Conread position:
               83-447
               

               Cow position:
               chr1:64804353-64803984 (view UCSC Genome Browser custom track)
               

               Alignm length:
               376
               

               Alignm identity:
               261
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               22, 196
               

               Conread position:
               83-451
               

               Cow position:
               chr1:15333639-15334013 (view UCSC Genome Browser custom track)
               

               Alignm length:
               386
               

               Alignm identity:
               271
               

               Alignm E-value:
               5.00264e-43
               

               Alignm gaps (pig, cow):
               13, 26
               

               Conread position:
               83-508
               

               Cow position:
               chr1:69415956-69415532 (view UCSC Genome Browser custom track)
               

               Alignm length:
               434
               

               Alignm identity:
               311
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               91, 15
               

               Conread position:
               84-440
               

               Cow position:
               chr1:3962927-3962576 (view UCSC Genome Browser custom track)
               

               Alignm length:
               366
               

               Alignm identity:
               261
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               20, 72
               

               Conread position:
               87-449
               

               Cow position:
               chr1:78809644-78809996 (view UCSC Genome Browser custom track)
               

               Alignm length:
               367
               

               Alignm identity:
               261
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               22, 7
               

               Conread position:
               87-508
               

               Cow position:
               chr1:64189262-64189679 (view UCSC Genome Browser custom track)
               

               Alignm length:
               427
               

               Alignm identity:
               300
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               22, 94
               

               Conread position:
               89-305
               

               Cow position:
               chr1:81277439-81277223 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               163
               

               Alignm E-value:
               8e-36
               

               Alignm gaps (pig, cow):
               21, 71
               

               Conread position:
               89-319
               

               Cow position:
               chr1:20287879-20288106 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               170
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               83, 21
               

               Conread position:
               89-334
               

               Cow position:
               chr1:88530025-88529793 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               173
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               18, 68
               

               Conread position:
               89-396
               

               Cow position:
               chr1:24597414-24597721 (view UCSC Genome Browser custom track)
               

               Alignm length:
               320
               

               Alignm identity:
               213
               

               Alignm E-value:
               6e-23
               

               Alignm gaps (pig, cow):
               20, 101
               

               Conread position:
               89-425
               

               Cow position:
               chr1:26729490-26729810 (view UCSC Genome Browser custom track)
               

               Alignm length:
               340
               

               Alignm identity:
               238
               

               Alignm E-value:
               4.00001e-40
               

               Alignm gaps (pig, cow):
               18, 98
               

               Conread position:
               89-448
               

               Cow position:
               chr1:40531347-40530984 (view UCSC Genome Browser custom track)
               

               Alignm length:
               374
               

               Alignm identity:
               253
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               20, 34
               

               Conread position:
               89-449
               

               Cow position:
               chr1:95056817-95057165 (view UCSC Genome Browser custom track)
               

               Alignm length:
               363
               

               Alignm identity:
               257
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               20, 132
               

               Conread position:
               89-464
               

               Cow position:
               chr1:62732337-62732704 (view UCSC Genome Browser custom track)
               

               Alignm length:
               382
               

               Alignm identity:
               265
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               20, 135
               

               Conread position:
               89-503
               

               Cow position:
               chr1:76096201-76096606 (view UCSC Genome Browser custom track)
               

               Alignm length:
               420
               

               Alignm identity:
               298
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               20, 105
               

               Conread position:
               89-508
               

               Cow position:
               chr1:25281914-25281480 (view UCSC Genome Browser custom track)
               

               Alignm length:
               440
               

               Alignm identity:
               299
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               20, 132
               

               Conread position:
               89-508
               

               Cow position:
               chr1:44506730-44507165 (view UCSC Genome Browser custom track)
               

               Alignm length:
               439
               

               Alignm identity:
               311
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               20, 35
               

               Conread position:
               89-508
               

               Cow position:
               chr1:51256798-51257192 (view UCSC Genome Browser custom track)
               

               Alignm length:
               431
               

               Alignm identity:
               297
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               16, 39
               

               Conread position:
               89-508
               

               Cow position:
               chr1:70236531-70236090 (view UCSC Genome Browser custom track)
               

               Alignm length:
               452
               

               Alignm identity:
               304
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               14, 56
               

               Conread position:
               90-353
               

               Cow position:
               chr1:71818699-71818439 (view UCSC Genome Browser custom track)
               

               Alignm length:
               270
               

               Alignm identity:
               190
               

               Alignm E-value:
               5e-32
               

               Alignm gaps (pig, cow):
               13, 134
               

               Conread position:
               90-433
               

               Cow position:
               chr1:56634859-56635202 (view UCSC Genome Browser custom track)
               

               Alignm length:
               350
               

               Alignm identity:
               270
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               9, 107
               

               Conread position:
               90-449
               

               Cow position:
               chr1:7442748-7443096 (view UCSC Genome Browser custom track)
               

               Alignm length:
               362
               

               Alignm identity:
               244
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               19, 101
               

               Conread position:
               94-286
               

               Cow position:
               chr1:86484724-86484925 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               144
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               80, 0
               

               Conread position:
               94-434
               

               Cow position:
               chr1:89381045-89381380 (view UCSC Genome Browser custom track)
               

               Alignm length:
               345
               

               Alignm identity:
               233
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               15, 55
               

               Conread position:
               94-508
               

               Cow position:
               chr1:52052936-52052536 (view UCSC Genome Browser custom track)
               

               Alignm length:
               420
               

               Alignm identity:
               298
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               21, 93
               

               Conread position:
               95-505
               

               Cow position:
               chr1:70434762-70435180 (view UCSC Genome Browser custom track)
               

               Alignm length:
               430
               

               Alignm identity:
               296
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               10, 135
               

               Conread position:
               95-508
               

               Cow position:
               chr1:6305098-6304680 (view UCSC Genome Browser custom track)
               

               Alignm length:
               426
               

               Alignm identity:
               289
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               75, 18
               

               Conread position:
               96-293
               

               Cow position:
               chr1:20799641-20799852 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               155
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               15, 159
               

               Conread position:
               96-314
               

               Cow position:
               chr1:51818710-51818929 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               158
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               21, 75
               

               Conread position:
               96-363
               

               Cow position:
               chr1:100512365-100512642 (view UCSC Genome Browser custom track)
               

               Alignm length:
               278
               

               Alignm identity:
               189
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               15, 0
               

               Conread position:
               96-388
               

               Cow position:
               chr1:73761583-73761295 (view UCSC Genome Browser custom track)
               

               Alignm length:
               299
               

               Alignm identity:
               209
               

               Alignm E-value:
               6e-34
               

               Alignm gaps (pig, cow):
               13, 85
               

               Conread position:
               96-461
               

               Cow position:
               chr1:85411348-85411709 (view UCSC Genome Browser custom track)
               

               Alignm length:
               370
               

               Alignm identity:
               251
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               20, 97
               

               Conread position:
               98-317
               

               Cow position:
               chr1:51836342-51836561 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               162
               

               Alignm E-value:
               6e-34
               

               Alignm gaps (pig, cow):
               11, 70
               

               Conread position:
               98-403
               

               Cow position:
               chr1:79278671-79278373 (view UCSC Genome Browser custom track)
               

               Alignm length:
               310
               

               Alignm identity:
               237
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               11, 40
               

               Conread position:
               98-430
               

               Cow position:
               chr1:27145880-27145552 (view UCSC Genome Browser custom track)
               

               Alignm length:
               339
               

               Alignm identity:
               231
               

               Alignm E-value:
               8e-37
               

               Alignm gaps (pig, cow):
               76, 13
               

               Conread position:
               98-448
               

               Cow position:
               chr1:89076864-89076514 (view UCSC Genome Browser custom track)
               

               Alignm length:
               364
               

               Alignm identity:
               244
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               7, 40
               

               Conread position:
               98-449
               

               Cow position:
               chr1:10964066-10964411 (view UCSC Genome Browser custom track)
               

               Alignm length:
               356
               

               Alignm identity:
               240
               

               Alignm E-value:
               9e-38
               

               Alignm gaps (pig, cow):
               13, 89
               

               Conread position:
               98-473
               

               Cow position:
               chr1:77118752-77118386 (view UCSC Genome Browser custom track)
               

               Alignm length:
               383
               

               Alignm identity:
               243
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               51, 10
               

               Conread position:
               98-506
               

               Cow position:
               chr1:65664836-65665228 (view UCSC Genome Browser custom track)
               

               Alignm length:
               417
               

               Alignm identity:
               289
               

               Alignm E-value:
               6.02558e-44
               

               Alignm gaps (pig, cow):
               76, 42
               

               Conread position:
               98-508
               

               Cow position:
               chr1:18283268-18283659 (view UCSC Genome Browser custom track)
               

               Alignm length:
               414
               

               Alignm identity:
               272
               

               Alignm E-value:
               7e-35
               

               Alignm gaps (pig, cow):
               11, 104
               

               Conread position:
               100-338
               

               Cow position:
               chr1:4293835-4294064 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               172
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               9, 88
               

               Conread position:
               104-449
               

               Cow position:
               chr1:49433486-49433144 (view UCSC Genome Browser custom track)
               

               Alignm length:
               352
               

               Alignm identity:
               254
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               72, 90
               

               Conread position:
               105-448
               

               Cow position:
               chr1:62036581-62036921 (view UCSC Genome Browser custom track)
               

               Alignm length:
               352
               

               Alignm identity:
               235
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               69, 13
               

               Conread position:
               105-449
               

               Cow position:
               chr1:43872553-43872200 (view UCSC Genome Browser custom track)
               

               Alignm length:
               359
               

               Alignm identity:
               258
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               10, 24
               

               Conread position:
               106-449
               

               Cow position:
               chr1:76740903-76740557 (view UCSC Genome Browser custom track)
               

               Alignm length:
               351
               

               Alignm identity:
               219
               

               Alignm E-value:
               6e-23
               

               Alignm gaps (pig, cow):
               60, 31
               

               Conread position:
               108-414
               

               Cow position:
               chr1:98310843-98311157 (view UCSC Genome Browser custom track)
               

               Alignm length:
               318
               

               Alignm identity:
               229
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               14, 206
               

               Conread position:
               110-335
               

               Cow position:
               chr1:45673496-45673720 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               160
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               209, 31
               

               Conread position:
               110-354
               

               Cow position:
               chr1:53540175-53540415 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               179
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               45, 115
               

               Conread position:
               110-364
               

               Cow position:
               chr1:71952872-71953110 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               180
               

               Alignm E-value:
               7e-25
               

               Alignm gaps (pig, cow):
               221, 77
               

               Conread position:
               110-434
               

               Cow position:
               chr1:52956044-52956356 (view UCSC Genome Browser custom track)
               

               Alignm length:
               328
               

               Alignm identity:
               228
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               235, 58
               

               Conread position:
               110-441
               

               Cow position:
               chr1:98461075-98461398 (view UCSC Genome Browser custom track)
               

               Alignm length:
               338
               

               Alignm identity:
               235
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               64, 103
               

               Conread position:
               110-507
               

               Cow position:
               chr1:7971215-7971600 (view UCSC Genome Browser custom track)
               

               Alignm length:
               411
               

               Alignm identity:
               284
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               239, 58
               

               Conread position:
               110-508
               

               Cow position:
               chr1:14981334-14980941 (view UCSC Genome Browser custom track)
               

               Alignm length:
               408
               

               Alignm identity:
               292
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               70, 41
               

               Conread position:
               110-508
               

               Cow position:
               chr1:74956239-74955835 (view UCSC Genome Browser custom track)
               

               Alignm length:
               410
               

               Alignm identity:
               288
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               64, 194
               

               Conread position:
               113-310
               

               Cow position:
               chr1:97785971-97786164 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               141
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               102, 53
               

               Conread position:
               113-427
               

               Cow position:
               chr1:40482624-40482315 (view UCSC Genome Browser custom track)
               

               Alignm length:
               331
               

               Alignm identity:
               231
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               122, 19
               

               Conread position:
               113-439
               

               Cow position:
               chr1:16962226-16961901 (view UCSC Genome Browser custom track)
               

               Alignm length:
               333
               

               Alignm identity:
               219
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               61, 183
               

               Conread position:
               113-452
               

               Cow position:
               chr1:19885172-19885504 (view UCSC Genome Browser custom track)
               

               Alignm length:
               346
               

               Alignm identity:
               252
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               57, 111
               

               Conread position:
               113-459
               

               Cow position:
               chr1:15691125-15691462 (view UCSC Genome Browser custom track)
               

               Alignm length:
               350
               

               Alignm identity:
               250
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               232, 107
               

               Conread position:
               114-448
               

               Cow position:
               chr1:34771715-34771384 (view UCSC Genome Browser custom track)
               

               Alignm length:
               338
               

               Alignm identity:
               249
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               75, 50
               

               Conread position:
               114-448
               

               Cow position:
               chr1:84015660-84015988 (view UCSC Genome Browser custom track)
               

               Alignm length:
               341
               

               Alignm identity:
               224
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               48, 184
               

               Conread position:
               115-309
               

               Cow position:
               chr1:64939153-64938958 (view UCSC Genome Browser custom track)
               

               Alignm length:
               200
               

               Alignm identity:
               146
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               62, 83
               

               Conread position:
               115-319
               

               Cow position:
               chr1:5061811-5062018 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               156
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               39, 110
               

               Conread position:
               116-343
               

               Cow position:
               chr1:41954463-41954229 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               159
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               70, 191
               

               Conread position:
               116-396
               

               Cow position:
               chr1:95654925-95654647 (view UCSC Genome Browser custom track)
               

               Alignm length:
               286
               

               Alignm identity:
               212
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               60, 108
               

               Conread position:
               116-442
               

               Cow position:
               chr1:90976292-90975976 (view UCSC Genome Browser custom track)
               

               Alignm length:
               330
               

               Alignm identity:
               229
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               106, 53
               

               Conread position:
               116-456
               

               Cow position:
               chr1:62291895-62291575 (view UCSC Genome Browser custom track)
               

               Alignm length:
               343
               

               Alignm identity:
               232
               

               Alignm E-value:
               5e-32
               

               Alignm gaps (pig, cow):
               232, 70
               

               Conread position:
               117-434
               

               Cow position:
               chr1:100393373-100393058 (view UCSC Genome Browser custom track)
               

               Alignm length:
               327
               

               Alignm identity:
               216
               

               Alignm E-value:
               8e-26
               

               Alignm gaps (pig, cow):
               57, 106
               

               Conread position:
               117-449
               

               Cow position:
               chr1:21955582-21955255 (view UCSC Genome Browser custom track)
               

               Alignm length:
               336
               

               Alignm identity:
               210
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               64, 176
               

               Conread position:
               117-502
               

               Cow position:
               chr1:58825340-58825712 (view UCSC Genome Browser custom track)
               

               Alignm length:
               389
               

               Alignm identity:
               281
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               193, 78
               

               Conread position:
               120-434
               

               Cow position:
               chr1:75141801-75142102 (view UCSC Genome Browser custom track)
               

               Alignm length:
               318
               

               Alignm identity:
               223
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               92, 33
               

               Conread position:
               122-397
               

               Cow position:
               chr1:86279211-86279480 (view UCSC Genome Browser custom track)
               

               Alignm length:
               279
               

               Alignm identity:
               194
               

               Alignm E-value:
               5e-33
               

               Alignm gaps (pig, cow):
               106, 68
               

               Conread position:
               123-397
               

               Cow position:
               chr1:63138636-63138908 (view UCSC Genome Browser custom track)
               

               Alignm length:
               279
               

               Alignm identity:
               185
               

               Alignm E-value:
               8e-26
               

               Alignm gaps (pig, cow):
               105, 171
               

               Conread position:
               123-449
               

               Cow position:
               chr1:28563771-28563449 (view UCSC Genome Browser custom track)
               

               Alignm length:
               332
               

               Alignm identity:
               235
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               99, 144
               

               Conread position:
               123-449
               

               Cow position:
               chr1:46030555-46030246 (view UCSC Genome Browser custom track)
               

               Alignm length:
               329
               

               Alignm identity:
               225
               

               Alignm E-value:
               7e-35
               

               Alignm gaps (pig, cow):
               231, 49
               

               Conread position:
               124-508
               

               Cow position:
               chr1:43340824-43340436 (view UCSC Genome Browser custom track)
               

               Alignm length:
               398
               

               Alignm identity:
               267
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               50, 179
               

               Conread position:
               125-294
               

               Cow position:
               chr1:49753730-49753896 (view UCSC Genome Browser custom track)
               

               Alignm length:
               170
               

               Alignm identity:
               122
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               94, 0
               

               Conread position:
               125-449
               

               Cow position:
               chr1:94261347-94261655 (view UCSC Genome Browser custom track)
               

               Alignm length:
               327
               

               Alignm identity:
               230
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               223, 51
               

               Conread position:
               126-363
               

               Cow position:
               chr1:81470929-81471166 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               174
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               46, 97
               

               Conread position:
               126-506
               

               Cow position:
               chr1:89547990-89548363 (view UCSC Genome Browser custom track)
               

               Alignm length:
               384
               

               Alignm identity:
               259
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               96, 81
               

               Conread position:
               127-403
               

               Cow position:
               chr1:51654212-51654498 (view UCSC Genome Browser custom track)
               

               Alignm length:
               287
               

               Alignm identity:
               207
               

               Alignm E-value:
               6.02558e-44
               

               Alignm gaps (pig, cow):
               183, 0
               

               Conread position:
               127-434
               

               Cow position:
               chr1:724536-724845 (view UCSC Genome Browser custom track)
               

               Alignm length:
               314
               

               Alignm identity:
               214
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               45, 81
               

               Conread position:
               128-451
               

               Cow position:
               chr1:51417577-51417893 (view UCSC Genome Browser custom track)
               

               Alignm length:
               328
               

               Alignm identity:
               215
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               17, 70
               

               Conread position:
               131-432
               

               Cow position:
               chr1:25734659-25734969 (view UCSC Genome Browser custom track)
               

               Alignm length:
               318
               

               Alignm identity:
               214
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               40, 172
               

               Conread position:
               132-372
               

               Cow position:
               chr1:82443650-82443412 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               172
               

               Alignm E-value:
               8e-36
               

               Alignm gaps (pig, cow):
               216, 164
               

               Conread position:
               132-448
               

               Cow position:
               chr1:32001514-32001202 (view UCSC Genome Browser custom track)
               

               Alignm length:
               322
               

               Alignm identity:
               214
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               156, 54
               

               Conread position:
               132-481
               

               Cow position:
               chr1:89443670-89443328 (view UCSC Genome Browser custom track)
               

               Alignm length:
               351
               

               Alignm identity:
               247
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               219, 88
               

               Conread position:
               132-508
               

               Cow position:
               chr1:9533981-9534339 (view UCSC Genome Browser custom track)
               

               Alignm length:
               379
               

               Alignm identity:
               279
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               13, 57
               

               Conread position:
               133-304
               

               Cow position:
               chr1:83594000-83593827 (view UCSC Genome Browser custom track)
               

               Alignm length:
               177
               

               Alignm identity:
               129
               

               Alignm E-value:
               6e-23
               

               Alignm gaps (pig, cow):
               41, 28
               

               Conread position:
               133-383
               

               Cow position:
               chr1:70028386-70028633 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               187
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               41, 90
               

               Conread position:
               133-420
               

               Cow position:
               chr1:70026534-70026254 (view UCSC Genome Browser custom track)
               

               Alignm length:
               291
               

               Alignm identity:
               217
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               216, 28
               

               Conread position:
               137-482
               

               Cow position:
               chr1:75933084-75933416 (view UCSC Genome Browser custom track)
               

               Alignm length:
               347
               

               Alignm identity:
               249
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               262, 83
               

               Conread position:
               141-361
               

               Cow position:
               chr1:3243754-3243967 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               156
               

               Alignm E-value:
               9e-27
               

               Alignm gaps (pig, cow):
               207, 42
               

               Conread position:
               142-451
               

               Cow position:
               chr1:84235514-84235210 (view UCSC Genome Browser custom track)
               

               Alignm length:
               316
               

               Alignm identity:
               208
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               76, 32
               

               Conread position:
               144-506
               

               Cow position:
               chr1:20581767-20582117 (view UCSC Genome Browser custom track)
               

               Alignm length:
               366
               

               Alignm identity:
               250
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               99, 77
               

               Conread position:
               144-508
               

               Cow position:
               chr1:24188051-24188399 (view UCSC Genome Browser custom track)
               

               Alignm length:
               368
               

               Alignm identity:
               253
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               107, 123
               

               Conread position:
               145-384
               

               Cow position:
               chr1:182633-182858 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               175
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               204, 24
               

               Conread position:
               145-505
               

               Cow position:
               chr1:38753739-38754111 (view UCSC Genome Browser custom track)
               

               Alignm length:
               379
               

               Alignm identity:
               255
               

               Alignm E-value:
               8e-36
               

               Alignm gaps (pig, cow):
               80, 15
               

               Conread position:
               146-508
               

               Cow position:
               chr1:13195604-13195255 (view UCSC Genome Browser custom track)
               

               Alignm length:
               368
               

               Alignm identity:
               251
               

               Alignm E-value:
               9e-38
               

               Alignm gaps (pig, cow):
               26, 78
               

               Conread position:
               147-461
               

               Cow position:
               chr1:50345364-50345677 (view UCSC Genome Browser custom track)
               

               Alignm length:
               320
               

               Alignm identity:
               224
               

               Alignm E-value:
               6.02558e-44
               

               Alignm gaps (pig, cow):
               27, 77
               

               Conread position:
               147-505
               

               Cow position:
               chr1:28678347-28678698 (view UCSC Genome Browser custom track)
               

               Alignm length:
               365
               

               Alignm identity:
               248
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               27, 80
               

               Conread position:
               147-508
               

               Cow position:
               chr1:79115157-79115524 (view UCSC Genome Browser custom track)
               

               Alignm length:
               372
               

               Alignm identity:
               241
               

               Alignm E-value:
               5e-32
               

               Alignm gaps (pig, cow):
               56, 48
               

               Conread position:
               148-449
               

               Cow position:
               chr1:65318401-65318694 (view UCSC Genome Browser custom track)
               

               Alignm length:
               306
               

               Alignm identity:
               219
               

               Alignm E-value:
               4.00001e-40
               

               Alignm gaps (pig, cow):
               80, 6
               

               Conread position:
               149-440
               

               Cow position:
               chr1:60281190-60281484 (view UCSC Genome Browser custom track)
               

               Alignm length:
               298
               

               Alignm identity:
               225
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               23, 75
               

               Conread position:
               149-449
               

               Cow position:
               chr1:55429136-55428836 (view UCSC Genome Browser custom track)
               

               Alignm length:
               309
               

               Alignm identity:
               223
               

               Alignm E-value:
               4.99983e-42
               

               Alignm gaps (pig, cow):
               25, 77
               

               Conread position:
               150-373
               

               Cow position:
               chr1:765743-765522 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               156
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               93, 11
               

               Conread position:
               150-415
               

               Cow position:
               chr1:6788460-6788197 (view UCSC Genome Browser custom track)
               

               Alignm length:
               268
               

               Alignm identity:
               198
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               199, 11
               

               Conread position:
               150-426
               

               Cow position:
               chr1:67305419-67305144 (view UCSC Genome Browser custom track)
               

               Alignm length:
               283
               

               Alignm identity:
               195
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               37, 9
               

               Conread position:
               151-399
               

               Cow position:
               chr1:19568674-19568920 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               173
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               23, 64
               

               Conread position:
               154-449
               

               Cow position:
               chr1:81580006-81580297 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               212
               

               Alignm E-value:
               8e-36
               

               Alignm gaps (pig, cow):
               140, 26
               

               Conread position:
               156-323
               

               Cow position:
               chr1:22688913-22689069 (view UCSC Genome Browser custom track)
               

               Alignm length:
               169
               

               Alignm identity:
               127
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               153, 27
               

               Conread position:
               157-338
               

               Cow position:
               chr1:81638234-81638412 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               135
               

               Alignm E-value:
               8e-26
               

               Alignm gaps (pig, cow):
               72, 104
               

               Conread position:
               157-369
               

               Cow position:
               chr1:10519207-10519000 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               145
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               15, 0
               

               Conread position:
               157-397
               

               Cow position:
               chr1:42398365-42398124 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               183
               

               Alignm E-value:
               4.99983e-42
               

               Alignm gaps (pig, cow):
               72, 138
               

               Conread position:
               157-439
               

               Cow position:
               chr1:57782841-57783112 (view UCSC Genome Browser custom track)
               

               Alignm length:
               285
               

               Alignm identity:
               207
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               190, 63
               

               Conread position:
               157-448
               

               Cow position:
               chr1:22525712-22525997 (view UCSC Genome Browser custom track)
               

               Alignm length:
               294
               

               Alignm identity:
               219
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               188, 15
               

               Conread position:
               157-449
               

               Cow position:
               chr1:484634-484347 (view UCSC Genome Browser custom track)
               

               Alignm length:
               298
               

               Alignm identity:
               206
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               68, 29
               

               Conread position:
               157-505
               

               Cow position:
               chr1:2997775-2998126 (view UCSC Genome Browser custom track)
               

               Alignm length:
               357
               

               Alignm identity:
               246
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               10, 65
               

               Conread position:
               157-505
               

               Cow position:
               chr1:16061187-16060814 (view UCSC Genome Browser custom track)
               

               Alignm length:
               377
               

               Alignm identity:
               248
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               64, 34
               

               Conread position:
               157-506
               

               Cow position:
               chr1:541639-541970 (view UCSC Genome Browser custom track)
               

               Alignm length:
               351
               

               Alignm identity:
               249
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               192, 33
               

               Conread position:
               157-508
               

               Cow position:
               chr1:20667910-20667553 (view UCSC Genome Browser custom track)
               

               Alignm length:
               369
               

               Alignm identity:
               269
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               58, 66
               

               Conread position:
               157-508
               

               Cow position:
               chr1:38525418-38525786 (view UCSC Genome Browser custom track)
               

               Alignm length:
               376
               

               Alignm identity:
               263
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               17, 127
               

               Conread position:
               157-508
               

               Cow position:
               chr1:49317665-49317304 (view UCSC Genome Browser custom track)
               

               Alignm length:
               367
               

               Alignm identity:
               248
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               191, 137
               

               Conread position:
               157-508
               

               Cow position:
               chr1:59518752-59519108 (view UCSC Genome Browser custom track)
               

               Alignm length:
               368
               

               Alignm identity:
               265
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               188, 62
               

               Conread position:
               157-508
               

               Cow position:
               chr1:101632507-101632155 (view UCSC Genome Browser custom track)
               

               Alignm length:
               358
               

               Alignm identity:
               242
               

               Alignm E-value:
               4.00001e-41
               

               Alignm gaps (pig, cow):
               191, 64
               

               Conread position:
               158-505
               

               Cow position:
               chr1:42545951-42545606 (view UCSC Genome Browser custom track)
               

               Alignm length:
               355
               

               Alignm identity:
               262
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               136, 28
               

               Conread position:
               159-309
               

               Cow position:
               chr1:32596287-32596440 (view UCSC Genome Browser custom track)
               

               Alignm length:
               155
               

               Alignm identity:
               114
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               56, 136
               

               Conread position:
               161-400
               

               Cow position:
               chr1:65905172-65904928 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               161
               

               Alignm E-value:
               6e-23
               

               Alignm gaps (pig, cow):
               18, 0
               

               Conread position:
               161-447
               

               Cow position:
               chr1:42175560-42175845 (view UCSC Genome Browser custom track)
               

               Alignm length:
               288
               

               Alignm identity:
               189
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               237, 58
               

               Conread position:
               161-480
               

               Cow position:
               chr1:75347456-75347775 (view UCSC Genome Browser custom track)
               

               Alignm length:
               324
               

               Alignm identity:
               232
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               55, 64
               

               Conread position:
               161-508
               

               Cow position:
               chr1:20544131-20544464 (view UCSC Genome Browser custom track)
               

               Alignm length:
               352
               

               Alignm identity:
               243
               

               Alignm E-value:
               4.00001e-40
               

               Alignm gaps (pig, cow):
               195, 58
               

               Conread position:
               163-312
               

               Cow position:
               chr1:52449770-52449620 (view UCSC Genome Browser custom track)
               

               Alignm length:
               152
               

               Alignm identity:
               111
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               80, 57
               

               Conread position:
               165-418
               

               Cow position:
               chr1:101946867-101946625 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               186
               

               Alignm E-value:
               8e-36
               

               Alignm gaps (pig, cow):
               180, 25
               

               Conread position:
               165-448
               

               Cow position:
               chr1:63530416-63530677 (view UCSC Genome Browser custom track)
               

               Alignm length:
               286
               

               Alignm identity:
               199
               

               Alignm E-value:
               8e-26
               

               Alignm gaps (pig, cow):
               180, 21
               

               Conread position:
               165-508
               

               Cow position:
               chr1:96472290-96472612 (view UCSC Genome Browser custom track)
               

               Alignm length:
               349
               

               Alignm identity:
               254
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               180, 27
               

               Conread position:
               168-448
               

               Cow position:
               chr1:87197670-87197939 (view UCSC Genome Browser custom track)
               

               Alignm length:
               283
               

               Alignm identity:
               195
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               181, 51
               

               Conread position:
               170-508
               

               Cow position:
               chr1:64572358-64572711 (view UCSC Genome Browser custom track)
               

               Alignm length:
               359
               

               Alignm identity:
               250
               

               Alignm E-value:
               4.00001e-40
               

               Alignm gaps (pig, cow):
               175, 49
               

               Conread position:
               171-395
               

               Cow position:
               chr1:6294651-6294433 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               160
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               158, 9
               

               Conread position:
               172-352
               

               Cow position:
               chr1:85826193-85826369 (view UCSC Genome Browser custom track)
               

               Alignm length:
               182
               

               Alignm identity:
               133
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               176, 14
               

               Conread position:
               172-361
               

               Cow position:
               chr1:51684650-51684838 (view UCSC Genome Browser custom track)
               

               Alignm length:
               192
               

               Alignm identity:
               148
               

               Alignm E-value:
               8e-36
               

               Alignm gaps (pig, cow):
               127, 14
               

               Conread position:
               172-391
               

               Cow position:
               chr1:24445780-24445567 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               158
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               173, 32
               

               Conread position:
               172-396
               

               Cow position:
               chr1:7609461-7609686 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               170
               

               Alignm E-value:
               8e-37
               

               Alignm gaps (pig, cow):
               19, 50
               

               Conread position:
               172-404
               

               Cow position:
               chr1:9470551-9470323 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               169
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               176, 49
               

               Conread position:
               172-425
               

               Cow position:
               chr1:33409781-33409529 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               177
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               57, 121
               

               Conread position:
               172-427
               

               Cow position:
               chr1:43703254-43703507 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               196
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               176, 48
               

               Conread position:
               172-432
               

               Cow position:
               chr1:41115868-41115616 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               193
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               167, 48
               

               Conread position:
               172-448
               

               Cow position:
               chr1:96081331-96081598 (view UCSC Genome Browser custom track)
               

               Alignm length:
               280
               

               Alignm identity:
               194
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               54, 82
               

               Conread position:
               172-449
               

               Cow position:
               chr1:44075861-44075599 (view UCSC Genome Browser custom track)
               

               Alignm length:
               281
               

               Alignm identity:
               192
               

               Alignm E-value:
               6e-23
               

               Alignm gaps (pig, cow):
               50, 13
               

               Conread position:
               172-449
               

               Cow position:
               chr1:62519204-62519483 (view UCSC Genome Browser custom track)
               

               Alignm length:
               283
               

               Alignm identity:
               188
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               121, 175
               

               Conread position:
               172-449
               

               Cow position:
               chr1:87095384-87095094 (view UCSC Genome Browser custom track)
               

               Alignm length:
               291
               

               Alignm identity:
               202
               

               Alignm E-value:
               7e-35
               

               Alignm gaps (pig, cow):
               121, 0
               

               Conread position:
               172-449
               

               Cow position:
               chr1:88913164-88913439 (view UCSC Genome Browser custom track)
               

               Alignm length:
               281
               

               Alignm identity:
               199
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               16, 48
               

               Conread position:
               172-451
               

               Cow position:
               chr1:98413613-98413894 (view UCSC Genome Browser custom track)
               

               Alignm length:
               286
               

               Alignm identity:
               203
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               53, 90
               

               Conread position:
               172-468
               

               Cow position:
               chr1:93554690-93554973 (view UCSC Genome Browser custom track)
               

               Alignm length:
               299
               

               Alignm identity:
               217
               

               Alignm E-value:
               5.00264e-43
               

               Alignm gaps (pig, cow):
               176, 70
               

               Conread position:
               172-506
               

               Cow position:
               chr1:39025885-39026201 (view UCSC Genome Browser custom track)
               

               Alignm length:
               345
               

               Alignm identity:
               235
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               121, 48
               

               Conread position:
               173-448
               

               Cow position:
               chr1:22192611-22192888 (view UCSC Genome Browser custom track)
               

               Alignm length:
               282
               

               Alignm identity:
               195
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               144, 110
               

               Conread position:
               174-434
               

               Cow position:
               chr1:77683206-77683457 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               196
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               174, 51
               

               Conread position:
               174-447
               

               Cow position:
               chr1:95557885-95558155 (view UCSC Genome Browser custom track)
               

               Alignm length:
               277
               

               Alignm identity:
               185
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               174, 69
               

               Conread position:
               174-448
               

               Cow position:
               chr1:65909375-65909629 (view UCSC Genome Browser custom track)
               

               Alignm length:
               276
               

               Alignm identity:
               202
               

               Alignm E-value:
               8e-37
               

               Alignm gaps (pig, cow):
               224, 120
               

               Conread position:
               174-448
               

               Cow position:
               chr1:97696589-97696863 (view UCSC Genome Browser custom track)
               

               Alignm length:
               278
               

               Alignm identity:
               190
               

               Alignm E-value:
               6e-34
               

               Alignm gaps (pig, cow):
               57, 199
               

               Conread position:
               174-449
               

               Cow position:
               chr1:35554753-35555033 (view UCSC Genome Browser custom track)
               

               Alignm length:
               284
               

               Alignm identity:
               185
               

               Alignm E-value:
               6e-23
               

               Alignm gaps (pig, cow):
               134, 119
               

               Conread position:
               174-480
               

               Cow position:
               chr1:63314677-63314981 (view UCSC Genome Browser custom track)
               

               Alignm length:
               309
               

               Alignm identity:
               201
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               66, 46
               

               Conread position:
               174-508
               

               Cow position:
               chr1:18414602-18414292 (view UCSC Genome Browser custom track)
               

               Alignm length:
               336
               

               Alignm identity:
               236
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               177, 21
               

               Conread position:
               174-508
               

               Cow position:
               chr1:46205666-46205987 (view UCSC Genome Browser custom track)
               

               Alignm length:
               336
               

               Alignm identity:
               222
               

               Alignm E-value:
               5e-32
               

               Alignm gaps (pig, cow):
               69, 46
               

               Conread position:
               175-433
               

               Cow position:
               chr1:31272591-31272338 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               189
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               174, 44
               

               Conread position:
               175-434
               

               Cow position:
               chr1:70312955-70312686 (view UCSC Genome Browser custom track)
               

               Alignm length:
               273
               

               Alignm identity:
               189
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               125, 45
               

               Conread position:
               175-449
               

               Cow position:
               chr1:89448750-89449020 (view UCSC Genome Browser custom track)
               

               Alignm length:
               277
               

               Alignm identity:
               192
               

               Alignm E-value:
               7e-35
               

               Alignm gaps (pig, cow):
               174, 11
               

               Conread position:
               176-434
               

               Cow position:
               chr1:14309185-14308928 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               180
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               43, 23
               

               Conread position:
               176-448
               

               Cow position:
               chr1:91811638-91811897 (view UCSC Genome Browser custom track)
               

               Alignm length:
               276
               

               Alignm identity:
               193
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               40, 47
               

               Conread position:
               176-451
               

               Cow position:
               chr1:23512804-23512539 (view UCSC Genome Browser custom track)
               

               Alignm length:
               278
               

               Alignm identity:
               200
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               172, 49
               

               Conread position:
               176-451
               

               Cow position:
               chr1:24778134-24777872 (view UCSC Genome Browser custom track)
               

               Alignm length:
               277
               

               Alignm identity:
               198
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               173, 33
               

               Conread position:
               177-434
               

               Cow position:
               chr1:85647930-85647677 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               185
               

               Alignm E-value:
               8e-36
               

               Alignm gaps (pig, cow):
               172, 42
               

               Conread position:
               179-388
               

               Cow position:
               chr1:93228379-93228583 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               153
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               20, 47
               

               Conread position:
               179-415
               

               Cow position:
               chr1:38692517-38692752 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               172
               

               Alignm E-value:
               8e-36
               

               Alignm gaps (pig, cow):
               64, 41
               

               Conread position:
               179-508
               

               Cow position:
               chr1:39225071-39224742 (view UCSC Genome Browser custom track)
               

               Alignm length:
               337
               

               Alignm identity:
               237
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               170, 40
               

               Conread position:
               180-450
               

               Cow position:
               chr1:6228730-6228464 (view UCSC Genome Browser custom track)
               

               Alignm length:
               273
               

               Alignm identity:
               185
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               168, 118
               

               Conread position:
               180-508
               

               Cow position:
               chr1:26531722-26531404 (view UCSC Genome Browser custom track)
               

               Alignm length:
               332
               

               Alignm identity:
               230
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               169, 8
               

               Conread position:
               182-404
               

               Cow position:
               chr1:87440325-87440542 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               156
               

               Alignm E-value:
               9e-27
               

               Alignm gaps (pig, cow):
               167, 37
               

               Conread position:
               183-494
               

               Cow position:
               chr1:50045657-50045965 (view UCSC Genome Browser custom track)
               

               Alignm length:
               315
               

               Alignm identity:
               222
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               60, 37
               

               Conread position:
               184-449
               

               Cow position:
               chr1:72813468-72813736 (view UCSC Genome Browser custom track)
               

               Alignm length:
               272
               

               Alignm identity:
               195
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               10, 114
               

               Conread position:
               188-447
               

               Cow position:
               chr1:85550215-85549960 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               194
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               160, 32
               

               Conread position:
               188-457
               

               Cow position:
               chr1:97090190-97090454 (view UCSC Genome Browser custom track)
               

               Alignm length:
               272
               

               Alignm identity:
               177
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               161, 31
               

               Conread position:
               188-469
               

               Cow position:
               chr1:47886626-47886341 (view UCSC Genome Browser custom track)
               

               Alignm length:
               291
               

               Alignm identity:
               201
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               41, 110
               

               Conread position:
               190-507
               

               Cow position:
               chr1:47790796-47790472 (view UCSC Genome Browser custom track)
               

               Alignm length:
               332
               

               Alignm identity:
               222
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               158, 7
               

               Conread position:
               192-370
               

               Cow position:
               chr1:70389302-70389470 (view UCSC Genome Browser custom track)
               

               Alignm length:
               180
               

               Alignm identity:
               131
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               153, 28
               

               Conread position:
               192-399
               

               Cow position:
               chr1:29451785-29451990 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               150
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               37, 59
               

               Conread position:
               192-448
               

               Cow position:
               chr1:92997032-92996773 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               176
               

               Alignm E-value:
               9e-27
               

               Alignm gaps (pig, cow):
               17, 91
               

               Conread position:
               193-397
               

               Cow position:
               chr1:83410311-83410512 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               145
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               131, 106
               

               Conread position:
               196-448
               

               Cow position:
               chr1:2976124-2975875 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               177
               

               Alignm E-value:
               7e-25
               

               Alignm gaps (pig, cow):
               33, 11
               

               Conread position:
               196-506
               

               Cow position:
               chr1:44746736-44747036 (view UCSC Genome Browser custom track)
               

               Alignm length:
               312
               

               Alignm identity:
               222
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               143, 24
               

               Conread position:
               197-449
               

               Cow position:
               chr1:79640418-79640168 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               170
               

               Alignm E-value:
               8e-26
               

               Alignm gaps (pig, cow):
               148, 21
               
197-485UCSC Genome Browser

               Conread position:
               
               

               Cow position:
               chr1:72731910-72732196 (view  custom track)
               

               Alignm length:
               291
               

               Alignm identity:
               208
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               148, 22
               
198-408UCSC Genome Browser

               
               
               
Conread position:

               
               
               
Cow position:chr1:5539404-5539197 (view  custom track)

               
               
               
Alignm length:216

               
               
               
Alignm identity:154

               
               
               
Alignm E-value:6e-24

               
               
               
Alignm gaps (pig, cow):31, 51
198-447UCSC Genome Browser

               
               
               
Conread position:

               
               
               
Cow position:chr1:72105286-72105524 (view  custom track)

               
               
               
Alignm length:251

               
               
               
Alignm identity:181

               
               
               
Alignm E-value:2e-33

               
               
               
Alignm gaps (pig, cow):199, 8

               
               
               Conread position:198-449
               
               
               Cow position:chr1:100569024-100569276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:169
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):31, 110

               
               
               Conread position:200-393
               
               
               Cow position:chr1:8984810-8984619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:139
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):149, 19

               
               
               Conread position:200-445
               
               
               Cow position:chr1:63038116-63038360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):75, 21

               
               
               Conread position:201-506
               
               
               Cow position:chr1:71666066-71665739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:226
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):15, 87

               
               
               Conread position:203-449
               
               
               Cow position:chr1:43311898-43311651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):119, 17

               
               
               Conread position:203-449
               
               
               Cow position:chr1:80422154-80422392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):12, 99

               
               
               Conread position:203-508
               
               
               Cow position:chr1:3607688-3607992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:216
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):196, 22

               
               
               Conread position:204-449
               
               
               Cow position:chr1:78697893-78697652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:175
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):25, 41

               
               
               Conread position:206-376
               
               
               Cow position:chr1:15169451-15169287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:124
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):142, 14

               
               
               Conread position:206-448
               
               
               Cow position:chr1:7023000-7023240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):143, 65

               
               
               Conread position:206-449
               
               
               Cow position:chr1:8347002-8347243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):25, 97

               
               
               Conread position:206-508
               
               
               Cow position:chr1:50634381-50634082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):10, 99

               
               
               Conread position:208-508
               
               
               Cow position:chr1:42541478-42541788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:230
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):48, 89

               
               
               Conread position:209-448
               
               
               Cow position:chr1:6826405-6826180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:172
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):139, 11

               
               
               Conread position:210-449
               
               
               Cow position:chr1:42482087-42482317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:161
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):138, 80

               
               
               Conread position:211-449
               
               
               Cow position:chr1:98511813-98512046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):19, 8

               
               
               Conread position:212-445
               
               
               Cow position:chr1:30189031-30189268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:173
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):18, 83

               
               
               Conread position:213-443
               
               
               Cow position:chr1:61543031-61542805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:175
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):135, 86

               
               
               Conread position:214-508
               
               
               Cow position:chr1:60509568-60509287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:199
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):183, 98

               
               
               Conread position:216-449
               
               
               Cow position:chr1:92989479-92989710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):132, 75

               
               
               Conread position:219-450
               
               
               Cow position:chr1:6972422-6972647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):129, 77

               
               
               Conread position:219-508
               
               
               Cow position:chr1:96928923-96929207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:210
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):26, 107

               
               
               Conread position:220-451
               
               
               Cow position:chr1:48769696-48769924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):19, 73

               
               
               Conread position:220-502
               
               
               Cow position:chr1:26427968-26427689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):129, 34

               
               
               Conread position:224-425
               
               
               Cow position:chr1:87936797-87936993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:145
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):124, 72

               
               
               Conread position:224-508
               
               
               Cow position:chr1:5637178-5636875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:208
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:224-508
               
               
               Cow position:chr1:43855199-43855486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):124, 72

               
               
               Conread position:226-505
               
               
               Cow position:chr1:59132313-59132041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):17, 54

               
               
               Conread position:227-449
               
               
               Cow position:chr1:22823806-22824025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:227-449
               
               
               Cow position:chr1:95153120-95153342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):65, 85

               
               
               Conread position:227-477
               
               
               Cow position:chr1:75250013-75250258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:178
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):170, 26

               
               
               Conread position:227-506
               
               
               Cow position:chr1:24406993-24406719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:207
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):118, 71

               
               
               Conread position:229-430
               
               
               Cow position:chr1:82513453-82513252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):120, 75

               
               
               Conread position:235-449
               
               
               Cow position:chr1:186370-186161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):22, 65

               
               
               Conread position:237-449
               
               
               Cow position:chr1:30418127-30417928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):160, 45

               
               
               Conread position:241-506
               
               
               Cow position:chr1:15028664-15028932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):65, 74

               
               
               Conread position:242-416
               
               
               Cow position:chr1:72684612-72684779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):103, 52

               
               
               Conread position:242-451
               
               
               Cow position:chr1:50991850-50992056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):111, 40

               
               
               Conread position:242-472
               
               
               Cow position:chr1:48083640-48083870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):21, 66

               
               
               Conread position:242-508
               
               
               Cow position:chr1:4788451-4788712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):107, 54

               
               
               Conread position:243-449
               
               
               Cow position:chr1:77892058-77892255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):10, 28

               
               
               Conread position:243-508
               
               
               Cow position:chr1:15902408-15902673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:197
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):75, 56

               
               
               Conread position:244-449
               
               
               Cow position:chr1:70416839-70416640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:144
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):152, 17

               
               
               Conread position:244-449
               
               
               Cow position:chr1:100474148-100474354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):8, 53

               
               
               Conread position:244-473
               
               
               Cow position:chr1:96192745-96192517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:170
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):105, 42

               
               
               Conread position:247-449
               
               
               Cow position:chr1:68672679-68672482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):101, 47

               
               
               Conread position:248-448
               
               
               Cow position:chr1:37726499-37726300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:145
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):9, 52

               
               
               Conread position:248-462
               
               
               Cow position:chr1:5229042-5228833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:154
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):70, 20

               
               
               Conread position:249-434
               
               
               Cow position:chr1:4581410-4581225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:135
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):40, 52

               
               
               Conread position:249-473
               
               
               Cow position:chr1:56225710-56225929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):33, 48

               
               
               Conread position:249-503
               
               
               Cow position:chr1:102753775-102754043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:189
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):99, 56

               
               
               Conread position:250-448
               
               
               Cow position:chr1:48214238-48214039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:144
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):49, 127

               
               
               Conread position:250-449
               
               
               Cow position:chr1:65028455-65028652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):94, 43

               
               
               Conread position:250-449
               
               
               Cow position:chr1:98575969-98576167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):98, 49

               
               
               Conread position:250-508
               
               
               Cow position:chr1:43548134-43547872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:199
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):6, 99

               
               
               Conread position:252-508
               
               
               Cow position:chr1:10673856-10674128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:202
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):5, 14

               
               
               Conread position:253-434
               
               
               Cow position:chr1:68676288-68676464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):144, 55

               
               
               Conread position:254-506
               
               
               Cow position:chr1:54216943-54217192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):99, 52

               
               
               Conread position:255-434
               
               
               Cow position:chr1:30983562-30983391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:135
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):143, 40

               
               
               Conread position:256-448
               
               
               Cow position:chr1:46764803-46764994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):92, 47

               
               
               Conread position:258-426
               
               
               Cow position:chr1:73936220-73936048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):44, 65

               
               
               Conread position:258-446
               
               
               Cow position:chr1:58036950-58037135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):90, 47

               
               
               Conread position:258-449
               
               
               Cow position:chr1:78068133-78067950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:141
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):90, 41

               
               
               Conread position:258-504
               
               
               Cow position:chr1:45223511-45223769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:190
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):90, 41

               
               
               Conread position:259-482
               
               
               Cow position:chr1:72807254-72807473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):165, 37

               
               
               Conread position:259-498
               
               
               Cow position:chr1:51565465-51565697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:174
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):132, 45

               
               
               Conread position:261-447
               
               
               Cow position:chr1:43312094-43311913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:136
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):87, 20

               
               
               Conread position:261-449
               
               
               Cow position:chr1:95072264-95072452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):79, 35

               
               
               Conread position:265-496
               
               
               Cow position:chr1:97962581-97962810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:174
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):84, 50

               
               
               Conread position:267-422
               
               
               Cow position:chr1:93577349-93577194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):82, 39

               
               
               Conread position:267-449
               
               
               Cow position:chr1:84768938-84768759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):82, 8

               
               
               Conread position:267-460
               
               
               Cow position:chr1:39121899-39121706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):82, 34

               
               
               Conread position:268-431
               
               
               Cow position:chr1:30504443-30504603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):80, 36

               
               
               Conread position:268-447
               
               
               Cow position:chr1:88359822-88359996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):80, 32

               
               
               Conread position:271-508
               
               
               Cow position:chr1:33998701-33998946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):80, 35

               
               
               Conread position:271-508
               
               
               Cow position:chr1:64218484-64218251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:190
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 24

               
               
               Conread position:272-449
               
               
               Cow position:chr1:77739661-77739841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:128
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):16, 158

               
               
               Conread position:273-434
               
               
               Cow position:chr1:69482005-69481843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:121
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):75, 22

               
               
               Conread position:274-508
               
               
               Cow position:chr1:92590142-92590370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):125, 32

               
               
               Conread position:275-448
               
               
               Cow position:chr1:95974343-95974519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):36, 26

               
               
               Conread position:281-482
               
               
               Cow position:chr1:59147392-59147192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):69, 25

               
               
               Conread position:287-451
               
               
               Cow position:chr1:8670732-8670896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):62, 14

               
               
               Conread position:292-508
               
               
               Cow position:chr1:54289229-54289013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):57, 14

               
               
               Conread position:292-508
               
               
               Cow position:chr1:97833673-97833894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):107, 52

               
               
               Conread position:297-499
               
               
               Cow position:chr1:12430294-12430103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:148
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):100, 6

               
               
               Conread position:299-447
               
               
               Cow position:chr1:101177483-101177633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:113
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):50, 104

               
               
               Conread position:302-508
               
               
               Cow position:chr1:81582084-81582292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):46, 134

               
               
               Conread position:303-505
               
               
               Cow position:chr1:74082010-74081807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):16, 145

               
               
               Conread position:303-508
               
               
               Cow position:chr1:38205446-38205648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:162
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):46, 177

               
               
               Conread position:307-448
               
               
               Cow position:chr1:21823338-21823481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:108
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:307-505
               
               
               Cow position:chr1:5006138-5006338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):41, 74

               
               
               Conread position:307-508
               
               
               Cow position:chr1:23759757-23759962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:308-508
               
               
               Cow position:chr1:47402505-47402702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):40, 105

               
               
               Conread position:309-434
               
               
               Cow position:chr1:13576908-13576775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:105
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:309-449
               
               
               Cow position:chr1:54157272-54157416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:309-449
               
               
               Cow position:chr1:98897716-98897574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:309-504
               
               
               Cow position:chr1:99071108-99071305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):40, 128

               
               
               Conread position:309-508
               
               
               Cow position:chr1:46006227-46006031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):9, 15

               
               
               Conread position:310-508
               
               
               Cow position:chr1:88338646-88338847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:146
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):39, 117

               
               
               Conread position:311-508
               
               
               Cow position:chr1:63078990-63079198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):37, 72

               
               
               Conread position:312-485
               
               
               Cow position:chr1:62142503-62142328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):37, 108

               
               
               Conread position:315-452
               
               
               Cow position:chr1:242541-242680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:104
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:316-508
               
               
               Cow position:chr1:46821956-46822147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):83, 25

               
               
               Conread position:317-508
               
               
               Cow position:chr1:71782675-71782492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:139
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):16, 6

               
               
               Conread position:317-508
               
               
               Cow position:chr1:96346701-96346511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):34, 6

               
               
               Conread position:319-449
               
               
               Cow position:chr1:45315648-45315516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:102
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:319-452
               
               
               Cow position:chr1:64019533-64019398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:102
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:320-449
               
               
               Cow position:chr1:61011170-61011301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:102
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:322-508
               
               
               Cow position:chr1:70416121-70416306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:135
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):24, 93

               
               
               Conread position:325-439
               
               
               Cow position:chr1:69941729-69941613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:95
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:325-508
               
               
               Cow position:chr1:6130738-6130562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):24, 40

               
               
               Conread position:329-508
               
               
               Cow position:chr1:95229333-95229152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:330-508
               
               
               Cow position:chr1:43499297-43499113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):18, 100

               
               
               Conread position:331-505
               
               
               Cow position:chr1:50261927-50261753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):20, 122

               
               
               Conread position:331-506
               
               
               Cow position:chr1:80384763-80384587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:129
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):18, 94

               
               
               Conread position:331-508
               
               
               Cow position:chr1:45925040-45925219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):9, 77

               
               
               Conread position:337-508
               
               
               Cow position:chr1:64706499-64706666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):14, 114

               
               
               Conread position:347-504
               
               
               Cow position:chr1:4680366-4680518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:117
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:348-505
               
               
               Cow position:chr1:29337933-29338090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:116
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:352-504
               
               
               Cow position:chr1:33921258-33921106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:352-508
               
               
               Cow position:chr1:79663416-79663256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:124
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:352-508
               
               
               Cow position:chr1:91796205-91796045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):47, 11

               
               
               Conread position:353-504
               
               
               Cow position:chr1:96043641-96043794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:118
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):46, 103

               
               
               Conread position:354-508
               
               
               Cow position:chr1:70044379-70044540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):11, 18

               
               
               Conread position:355-508
               
               
               Cow position:chr1:48143540-48143684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:356-502
               
               
               Cow position:chr1:83926413-83926560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:357-508
               
               
               Cow position:chr1:64624800-64624651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):41, 94

               
               
               Conread position:361-508
               
               
               Cow position:chr1:44169684-44169831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:114
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):37, 10

               
               
               Conread position:367-504
               
               
               Cow position:chr1:100366031-100365893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:4-293
               
               
               Cow position:chr10:28933375-28933679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:226
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):9, 151

               
               
               Conread position:8-419
               
               
               Cow position:chr10:33215446-33215860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:281
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):5, 218

               
               
               Conread position:11-365
               
               
               Cow position:chr10:32093446-32093811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:259
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):83, 39

               
               
               Conread position:12-338
               
               
               Cow position:chr10:20516918-20517249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:240
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):94, 33

               
               
               Conread position:12-364
               
               
               Cow position:chr10:5607302-5607649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 42

               
               
               Conread position:12-364
               
               
               Cow position:chr10:60358387-60358731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 211

               
               
               Conread position:12-464
               
               
               Cow position:chr10:14787875-14787452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:314
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):231, 20

               
               
               Conread position:12-506
               
               
               Cow position:chr10:62516523-62517029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:360
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 221

               
               
               Conread position:15-368
               
               
               Cow position:chr10:9445339-9445011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:15-449
               
               
               Cow position:chr10:24022619-24022193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):189, 49

               
               
               Conread position:15-449
               
               
               Cow position:chr10:61588602-61588170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 58

               
               
               Conread position:16-268
               
               
               Cow position:chr10:66879028-66879286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):101, 49

               
               
               Conread position:16-284
               
               
               Cow position:chr10:29628295-29628022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:197
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):57, 222

               
               
               Conread position:16-284
               
               
               Cow position:chr10:37125244-37124970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:16-284
               
               
               Cow position:chr10:45977591-45977316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:16-300
               
               
               Cow position:chr10:2394801-2394523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 45

               
               
               Conread position:16-300
               
               
               Cow position:chr10:46801341-46801062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:214
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):73, 57

               
               
               Conread position:16-308
               
               
               Cow position:chr10:46491370-46491087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):53, 17

               
               
               Conread position:16-310
               
               
               Cow position:chr10:55097031-55097331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:16-311
               
               
               Cow position:chr10:49433296-49433593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:188
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):158, 274

               
               
               Conread position:16-313
               
               
               Cow position:chr10:67716645-67716943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:204
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):93, 29

               
               
               Conread position:16-323
               
               
               Cow position:chr10:41397126-41397451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:223
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):54, 199

               
               
               Conread position:16-343
               
               
               Cow position:chr10:668526-668864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 280

               
               
               Conread position:16-343
               
               
               Cow position:chr10:37528949-37528622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 152

               
               
               Conread position:16-346
               
               
               Cow position:chr10:50200362-50200697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:239
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):52, 151

               
               
               Conread position:16-346
               
               
               Cow position:chr10:64878334-64878004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:237
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):93, 65

               
               
               Conread position:16-362
               
               
               Cow position:chr10:11487317-11486975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:249
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):275, 51

               
               
               Conread position:16-362
               
               
               Cow position:chr10:43676230-43675876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:228
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:16-370
               
               
               Cow position:chr10:20398865-20399212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 17

               
               
               Conread position:16-373
               
               
               Cow position:chr10:6551197-6551556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:228
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):83, 289

               
               
               Conread position:16-390
               
               
               Cow position:chr10:48510626-48510250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:243
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):101, 260

               
               
               Conread position:16-397
               
               
               Cow position:chr10:15294019-15294402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 101

               
               
               Conread position:16-397
               
               
               Cow position:chr10:27717180-27716803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):219, 97

               
               
               Conread position:16-397
               
               
               Cow position:chr10:41571076-41571459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:248
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):101, 250

               
               
               Conread position:16-399
               
               
               Cow position:chr10:38942093-38942472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:273
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):93, 49

               
               
               Conread position:16-399
               
               
               Cow position:chr10:52569253-52569631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 115

               
               
               Conread position:16-415
               
               
               Cow position:chr10:24547917-24548306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 206

               
               
               Conread position:16-419
               
               
               Cow position:chr10:24308236-24307863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 57

               
               
               Conread position:16-419
               
               
               Cow position:chr10:42755000-42755383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 50

               
               
               Conread position:16-422
               
               
               Cow position:chr10:54469724-54469330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 136

               
               
               Conread position:16-423
               
               
               Cow position:chr10:31854983-31855399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 122

               
               
               Conread position:16-425
               
               
               Cow position:chr10:804852-805256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:282
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):63, 199

               
               
               Conread position:16-426
               
               
               Cow position:chr10:36896060-36896472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 76

               
               
               Conread position:16-431
               
               
               Cow position:chr10:20478539-20478970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:298
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):52, 268

               
               
               Conread position:16-432
               
               
               Cow position:chr10:58718310-58718725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:283
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):89, 206

               
               
               Conread position:16-434
               
               
               Cow position:chr10:12392938-12392534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):129, 45

               
               
               Conread position:16-434
               
               
               Cow position:chr10:17073694-17073289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 130

               
               
               Conread position:16-434
               
               
               Cow position:chr10:24763133-24763558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 178

               
               
               Conread position:16-434
               
               
               Cow position:chr10:33665500-33665918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 54

               
               
               Conread position:16-434
               
               
               Cow position:chr10:35753304-35752887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 219

               
               
               Conread position:16-434
               
               
               Cow position:chr10:45769703-45770119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 35

               
               
               Conread position:16-434
               
               
               Cow position:chr10:62286210-62286632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 184

               
               
               Conread position:16-439
               
               
               Cow position:chr10:6505009-6505432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 218

               
               
               Conread position:16-440
               
               
               Cow position:chr10:69564270-69564682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:267
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):101, 116

               
               
               Conread position:16-441
               
               
               Cow position:chr10:59839633-59839205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 157

               
               
               Conread position:16-443
               
               
               Cow position:chr10:65424253-65423820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 193

               
               
               Conread position:16-446
               
               
               Cow position:chr10:6235765-6235360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 155

               
               
               Conread position:16-447
               
               
               Cow position:chr10:5151000-5151433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 214

               
               
               Conread position:16-447
               
               
               Cow position:chr10:5543590-5543162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 29

               
               
               Conread position:16-447
               
               
               Cow position:chr10:10721026-10720585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 217

               
               
               Conread position:16-447
               
               
               Cow position:chr10:16598347-16598777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 177

               
               
               Conread position:16-447
               
               
               Cow position:chr10:28671165-28670729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 177

               
               
               Conread position:16-448
               
               
               Cow position:chr10:12314818-12315236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 138

               
               
               Conread position:16-449
               
               
               Cow position:chr10:11009081-11009500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 139

               
               
               Conread position:16-449
               
               
               Cow position:chr10:15818134-15817704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 30

               
               
               Conread position:16-449
               
               
               Cow position:chr10:15867901-15868342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 48

               
               
               Conread position:16-449
               
               
               Cow position:chr10:17175691-17176123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 161

               
               
               Conread position:16-449
               
               
               Cow position:chr10:22616985-22616550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 280

               
               
               Conread position:16-449
               
               
               Cow position:chr10:28776027-28776441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:295
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):14, 82

               
               
               Conread position:16-449
               
               
               Cow position:chr10:30523398-30522973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 138

               
               
               Conread position:16-449
               
               
               Cow position:chr10:40106775-40107190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 138

               
               
               Conread position:16-449
               
               
               Cow position:chr10:50016331-50015907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 45

               
               
               Conread position:16-449
               
               
               Cow position:chr10:50332251-50332683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):253, 92

               
               
               Conread position:16-449
               
               
               Cow position:chr10:52278379-52278815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 215

               
               
               Conread position:16-449
               
               
               Cow position:chr10:55122455-55122897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):158, 51

               
               
               Conread position:16-449
               
               
               Cow position:chr10:61839259-61839673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 47

               
               
               Conread position:16-449
               
               
               Cow position:chr10:65132617-65133034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 176

               
               
               Conread position:16-450
               
               
               Cow position:chr10:53336744-53336312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 38

               
               
               Conread position:16-450
               
               
               Cow position:chr10:60960598-60961026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 29

               
               
               Conread position:16-451
               
               
               Cow position:chr10:28395626-28395209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):319, 47

               
               
               Conread position:16-452
               
               
               Cow position:chr10:1488505-1488926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 83

               
               
               Conread position:16-452
               
               
               Cow position:chr10:59010483-59010042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 262

               
               
               Conread position:16-452
               
               
               Cow position:chr10:67580955-67581378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:297
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):93, 45

               
               
               Conread position:16-455
               
               
               Cow position:chr10:16645536-16645093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 290

               
               
               Conread position:16-455
               
               
               Cow position:chr10:31362548-31362116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 35

               
               
               Conread position:16-456
               
               
               Cow position:chr10:42312563-42313001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 69

               
               
               Conread position:16-457
               
               
               Cow position:chr10:35862570-35862131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 57

               
               
               Conread position:16-460
               
               
               Cow position:chr10:8077491-8077060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 50

               
               
               Conread position:16-462
               
               
               Cow position:chr10:11032838-11032397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 34

               
               
               Conread position:16-469
               
               
               Cow position:chr10:59664309-59663862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 122

               
               
               Conread position:16-480
               
               
               Cow position:chr10:27576139-27576576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:311
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):16, 46

               
               
               Conread position:16-484
               
               
               Cow position:chr10:21461899-21462361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:354
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 130

               
               
               Conread position:16-486
               
               
               Cow position:chr10:11221378-11221834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):206, 54

               
               
               Conread position:16-498
               
               
               Cow position:chr10:52590023-52589542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:496
               
               
               Alignm identity:363
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 56

               
               
               Conread position:16-502
               
               
               Cow position:chr10:26620890-26620419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:500
               
               
               Alignm identity:354
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 45

               
               
               Conread position:16-503
               
               
               Cow position:chr10:22321185-22321656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:496
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):133, 87

               
               
               Conread position:16-504
               
               
               Cow position:chr10:39081042-39081538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 221

               
               
               Conread position:16-505
               
               
               Cow position:chr10:23097119-23096635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:364
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 120

               
               
               Conread position:16-506
               
               
               Cow position:chr10:8413381-8412907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:502
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 30

               
               
               Conread position:16-506
               
               
               Cow position:chr10:22528242-22527755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:497
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 57

               
               
               Conread position:16-506
               
               
               Cow position:chr10:23949269-23948772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 150

               
               
               Conread position:16-506
               
               
               Cow position:chr10:25342245-25342747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:514
               
               
               Alignm identity:328
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):79, 292

               
               
               Conread position:16-506
               
               
               Cow position:chr10:48741501-48741017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:497
               
               
               Alignm identity:365
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 154

               
               
               Conread position:16-507
               
               
               Cow position:chr10:25478768-25479239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:500
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):99, 44

               
               
               Conread position:16-507
               
               
               Cow position:chr10:40737664-40738156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:515
               
               
               Alignm identity:329
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):15, 55

               
               
               Conread position:16-507
               
               
               Cow position:chr10:56475127-56475620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:502
               
               
               Alignm identity:355
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 172

               
               
               Conread position:16-508
               
               
               Cow position:chr10:3998568-3999057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:499
               
               
               Alignm identity:354
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):329, 54

               
               
               Conread position:16-508
               
               
               Cow position:chr10:22480065-22479578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:499
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):158, 92

               
               
               Conread position:16-508
               
               
               Cow position:chr10:29339732-29339249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:381
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):139, 44

               
               
               Conread position:16-508
               
               
               Cow position:chr10:31527652-31528134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:355
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 158

               
               
               Conread position:16-508
               
               
               Cow position:chr10:34897652-34898123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:504
               
               
               Alignm identity:326
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):41, 133

               
               
               Conread position:16-508
               
               
               Cow position:chr10:35912088-35911613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:499
               
               
               Alignm identity:357
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 99

               
               
               Conread position:16-508
               
               
               Cow position:chr10:39387119-39387615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:367
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 26

               
               
               Conread position:16-508
               
               
               Cow position:chr10:40421185-40420688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:366
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 29

               
               
               Conread position:16-508
               
               
               Cow position:chr10:49045502-49045985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:501
               
               
               Alignm identity:355
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 151

               
               
               Conread position:16-508
               
               
               Cow position:chr10:54948463-54947977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:366
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):177, 73

               
               
               Conread position:17-301
               
               
               Cow position:chr10:29211617-29211904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:205
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):92, 220

               
               
               Conread position:17-302
               
               
               Cow position:chr10:7737449-7737747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:195
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:17-343
               
               
               Cow position:chr10:52152182-52152511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 184

               
               
               Conread position:17-357
               
               
               Cow position:chr10:19104523-19104175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 288

               
               
               Conread position:17-373
               
               
               Cow position:chr10:15504322-15503965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:230
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):100, 249

               
               
               Conread position:17-400
               
               
               Cow position:chr10:14098658-14098292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:270
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):88, 28

               
               
               Conread position:17-432
               
               
               Cow position:chr10:59675593-59675182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 105

               
               
               Conread position:17-448
               
               
               Cow position:chr10:52046525-52046960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 93

               
               
               Conread position:17-449
               
               
               Cow position:chr10:18041839-18042270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 252

               
               
               Conread position:17-449
               
               
               Cow position:chr10:41626268-41626683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 62

               
               
               Conread position:17-452
               
               
               Cow position:chr10:30456191-30455737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 44

               
               
               Conread position:17-471
               
               
               Cow position:chr10:20132867-20132416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 43

               
               
               Conread position:17-506
               
               
               Cow position:chr10:24785754-24786255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:359
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 130

               
               
               Conread position:17-507
               
               
               Cow position:chr10:28721453-28721944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 37

               
               
               Conread position:17-508
               
               
               Cow position:chr10:2849020-2849496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:496
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 43

               
               
               Conread position:17-508
               
               
               Cow position:chr10:54476765-54477244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:502
               
               
               Alignm identity:357
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 132

               
               
               Conread position:17-508
               
               
               Cow position:chr10:69558600-69559078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:498
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):379, 44

               
               
               Conread position:18-343
               
               
               Cow position:chr10:14976141-14975812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 125

               
               
               Conread position:18-346
               
               
               Cow position:chr10:20735367-20735687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 171

               
               
               Conread position:18-363
               
               
               Cow position:chr10:6986108-6986448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 28

               
               
               Conread position:18-392
               
               
               Cow position:chr10:2304708-2304349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:263
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):94, 43

               
               
               Conread position:18-397
               
               
               Cow position:chr10:50110243-50109866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 155

               
               
               Conread position:18-415
               
               
               Cow position:chr10:59588508-59588119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 227

               
               
               Conread position:18-423
               
               
               Cow position:chr10:46469033-46468633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:283
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):79, 113

               
               
               Conread position:18-432
               
               
               Cow position:chr10:23886785-23886387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):330, 85

               
               
               Conread position:18-432
               
               
               Cow position:chr10:68829606-68829212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 116

               
               
               Conread position:18-434
               
               
               Cow position:chr10:39875475-39875078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):379, 69

               
               
               Conread position:18-440
               
               
               Cow position:chr10:13311395-13311814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 49

               
               
               Conread position:18-448
               
               
               Cow position:chr10:8093657-8093228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 150

               
               
               Conread position:18-448
               
               
               Cow position:chr10:24870824-24871254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 287

               
               
               Conread position:18-449
               
               
               Cow position:chr10:48462680-48462253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 61

               
               
               Conread position:18-452
               
               
               Cow position:chr10:22471973-22472418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 256

               
               
               Conread position:18-457
               
               
               Cow position:chr10:31374446-31373993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 110

               
               
               Conread position:18-485
               
               
               Cow position:chr10:38518971-38518506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:351
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 42

               
               
               Conread position:18-505
               
               
               Cow position:chr10:9287729-9288192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:495
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 43

               
               
               Conread position:18-506
               
               
               Cow position:chr10:41985237-41984740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:505
               
               
               Alignm identity:358
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 25

               
               
               Conread position:18-507
               
               
               Cow position:chr10:21448236-21447767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:499
               
               
               Alignm identity:362
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 145

               
               
               Conread position:18-508
               
               
               Cow position:chr10:4310851-4311328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 48

               
               
               Conread position:18-508
               
               
               Cow position:chr10:10468639-10469130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:505
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 140

               
               
               Conread position:19-294
               
               
               Cow position:chr10:48377971-48377703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):83, 46

               
               
               Conread position:19-504
               
               
               Cow position:chr10:32583580-32584057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:490
               
               
               Alignm identity:360
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 38

               
               
               Conread position:19-508
               
               
               Cow position:chr10:35905169-35904677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 284

               
               
               Conread position:20-310
               
               
               Cow position:chr10:26291522-26291226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:189
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):40, 34

               
               
               Conread position:20-449
               
               
               Cow position:chr10:42636893-42637323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):207, 64

               
               
               Conread position:21-269
               
               
               Cow position:chr10:7095586-7095840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:175
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):88, 211

               
               
               Conread position:22-472
               
               
               Cow position:chr10:53674486-53674946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 176

               
               
               Conread position:22-508
               
               
               Cow position:chr10:69767013-69766534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:497
               
               
               Alignm identity:322
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):93, 65

               
               
               Conread position:23-432
               
               
               Cow position:chr10:65748623-65749025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:282
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):76, 118

               
               
               Conread position:26-298
               
               
               Cow position:chr10:20446768-20447036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:200
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):83, 140

               
               
               Conread position:26-362
               
               
               Cow position:chr10:47493525-47493207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:243
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):81, 51

               
               
               Conread position:26-364
               
               
               Cow position:chr10:40646214-40646542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:246
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):285, 40

               
               
               Conread position:26-508
               
               
               Cow position:chr10:56705920-56705437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:493
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 162

               
               
               Conread position:27-408
               
               
               Cow position:chr10:29188691-29188306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:264
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):84, 273

               
               
               Conread position:27-427
               
               
               Cow position:chr10:35887735-35887328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:284
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):45, 86

               
               
               Conread position:27-434
               
               
               Cow position:chr10:28105392-28105004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 37

               
               
               Conread position:27-439
               
               
               Cow position:chr10:9082968-9083381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 147

               
               
               Conread position:27-451
               
               
               Cow position:chr10:34430543-34430133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 27

               
               
               Conread position:27-452
               
               
               Cow position:chr10:19372658-19372243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 33

               
               
               Conread position:27-505
               
               
               Cow position:chr10:41407956-41408430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:492
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 161

               
               
               Conread position:30-449
               
               
               Cow position:chr10:10752308-10751900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 240

               
               
               Conread position:30-449
               
               
               Cow position:chr10:37014311-37014724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 100

               
               
               Conread position:31-432
               
               
               Cow position:chr10:24744799-24745192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 194

               
               
               Conread position:33-506
               
               
               Cow position:chr10:33915376-33914903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:494
               
               
               Alignm identity:325
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):74, 134

               
               
               Conread position:35-347
               
               
               Cow position:chr10:19678545-19678860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 190

               
               
               Conread position:39-471
               
               
               Cow position:chr10:31791576-31791148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 15

               
               
               Conread position:40-405
               
               
               Cow position:chr10:38421968-38421604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:245
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):37, 19

               
               
               Conread position:41-448
               
               
               Cow position:chr10:20896984-20897377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:282
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):37, 174

               
               
               Conread position:46-379
               
               
               Cow position:chr10:1087708-1088049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 149

               
               
               Conread position:46-434
               
               
               Cow position:chr10:56828632-56828242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 178

               
               
               Conread position:46-449
               
               
               Cow position:chr10:26209573-26209157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 296

               
               
               Conread position:46-508
               
               
               Cow position:chr10:42453826-42454268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):272, 174

               
               
               Conread position:47-399
               
               
               Cow position:chr10:41803206-41802860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:246
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):62, 49

               
               
               Conread position:49-378
               
               
               Cow position:chr10:64182142-64182466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:233
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):47, 62

               
               
               Conread position:50-400
               
               
               Cow position:chr10:47711063-47711410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:232
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):58, 105

               
               
               Conread position:50-434
               
               
               Cow position:chr10:1423524-1423906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:273
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):57, 144

               
               
               Conread position:50-508
               
               
               Cow position:chr10:54504296-54504770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 28

               
               
               Conread position:53-449
               
               
               Cow position:chr10:49169362-49168944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 13

               
               
               Conread position:54-277
               
               
               Cow position:chr10:5847807-5847581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):60, 161

               
               
               Conread position:54-336
               
               
               Cow position:chr10:19402634-19402914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:195
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):57, 10

               
               
               Conread position:54-397
               
               
               Cow position:chr10:35767382-35767052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 116

               
               
               Conread position:54-434
               
               
               Cow position:chr10:68183233-68182879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:258
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):57, 11

               
               
               Conread position:54-448
               
               
               Cow position:chr10:56080476-56080084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 19

               
               
               Conread position:57-308
               
               
               Cow position:chr10:888626-888879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:185
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):54, 137

               
               
               Conread position:57-399
               
               
               Cow position:chr10:64876217-64876559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:238
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):52, 16

               
               
               Conread position:57-448
               
               
               Cow position:chr10:40906011-40906403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:264
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):9, 63

               
               
               Conread position:58-301
               
               
               Cow position:chr10:54936412-54936165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:58-448
               
               
               Cow position:chr10:2974388-2973997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:276
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):47, 6

               
               
               Conread position:59-397
               
               
               Cow position:chr10:12919637-12919319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:233
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):52, 21

               
               
               Conread position:60-434
               
               
               Cow position:chr10:29165979-29166348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 208

               
               
               Conread position:62-508
               
               
               Cow position:chr10:19704797-19704363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 17

               
               
               Conread position:65-348
               
               
               Cow position:chr10:40543316-40543024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:224
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):14, 132

               
               
               Conread position:65-379
               
               
               Cow position:chr10:35975267-35975571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:218
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):44, 159

               
               
               Conread position:66-278
               
               
               Cow position:chr10:39646396-39646181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:66-328
               
               
               Cow position:chr10:24871596-24871858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:199
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):33, 56

               
               
               Conread position:66-338
               
               
               Cow position:chr10:17982897-17983161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:190
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):163, 28

               
               
               Conread position:66-374
               
               
               Cow position:chr10:7304280-7304590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:208
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):39, 230

               
               
               Conread position:66-388
               
               
               Cow position:chr10:35857346-35857033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 57

               
               
               Conread position:66-397
               
               
               Cow position:chr10:53083874-53084207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:230
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):43, 7

               
               
               Conread position:66-434
               
               
               Cow position:chr10:15318594-15318960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 110

               
               
               Conread position:66-434
               
               
               Cow position:chr10:23936192-23936552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 156

               
               
               Conread position:66-434
               
               
               Cow position:chr10:34175288-34174902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:263
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):43, 159

               
               
               Conread position:66-449
               
               
               Cow position:chr10:15292980-15293356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 64

               
               
               Conread position:66-451
               
               
               Cow position:chr10:22048962-22049347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:271
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):37, 15

               
               
               Conread position:66-452
               
               
               Cow position:chr10:23912788-23912419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 203

               
               
               Conread position:66-459
               
               
               Cow position:chr10:21424976-21424579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 159

               
               
               Conread position:66-506
               
               
               Cow position:chr10:10124054-10124490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 19

               
               
               Conread position:67-321
               
               
               Cow position:chr10:65130953-65130697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:183
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):46, 156

               
               
               Conread position:67-346
               
               
               Cow position:chr10:20505251-20505531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):242, 46

               
               
               Conread position:67-346
               
               
               Cow position:chr10:31266614-31266347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):258, 27

               
               
               Conread position:67-363
               
               
               Cow position:chr10:60032866-60032566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:216
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):44, 49

               
               
               Conread position:67-364
               
               
               Cow position:chr10:41255697-41255989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):34, 53

               
               
               Conread position:67-434
               
               
               Cow position:chr10:13586423-13586779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 154

               
               
               Conread position:67-449
               
               
               Cow position:chr10:15872153-15871782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 98

               
               
               Conread position:67-503
               
               
               Cow position:chr10:21082105-21082534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 71

               
               
               Conread position:68-434
               
               
               Cow position:chr10:53935029-53934677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:266
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):41, 63

               
               
               Conread position:70-284
               
               
               Cow position:chr10:20811887-20812106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):39, 156

               
               
               Conread position:70-316
               
               
               Cow position:chr10:35026192-35026439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):39, 105

               
               
               Conread position:70-379
               
               
               Cow position:chr10:20372419-20372105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 239

               
               
               Conread position:70-397
               
               
               Cow position:chr10:29360620-29360956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:230
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):39, 141

               
               
               Conread position:70-504
               
               
               Cow position:chr10:13391341-13390903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 156

               
               
               Conread position:70-506
               
               
               Cow position:chr10:47788756-47789166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 104

               
               
               Conread position:70-508
               
               
               Cow position:chr10:9342026-9341587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 162

               
               
               Conread position:71-331
               
               
               Cow position:chr10:59675893-59675635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 151

               
               
               Conread position:71-360
               
               
               Cow position:chr10:22652407-22652701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:207
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):34, 157

               
               
               Conread position:71-360
               
               
               Cow position:chr10:57457045-57457336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:214
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):43, 162

               
               
               Conread position:71-399
               
               
               Cow position:chr10:29069869-29070196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 157

               
               
               Conread position:71-421
               
               
               Cow position:chr10:49038273-49038647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:71-443
               
               
               Cow position:chr10:25699379-25699734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):276, 39

               
               
               Conread position:71-448
               
               
               Cow position:chr10:1976607-1976228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 234

               
               
               Conread position:71-449
               
               
               Cow position:chr10:39227870-39228238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 92

               
               
               Conread position:71-449
               
               
               Cow position:chr10:52296211-52296585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 153

               
               
               Conread position:71-499
               
               
               Cow position:chr10:37235838-37235391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 39

               
               
               Conread position:71-505
               
               
               Cow position:chr10:17844482-17844929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:308
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):41, 55

               
               
               Conread position:71-507
               
               
               Cow position:chr10:65072397-65071970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 73

               
               
               Conread position:71-508
               
               
               Cow position:chr10:42745626-42746077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 138

               
               
               Conread position:71-508
               
               
               Cow position:chr10:55011853-55012282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:288
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):33, 116

               
               
               Conread position:71-508
               
               
               Cow position:chr10:57461079-57461520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 82

               
               
               Conread position:72-449
               
               
               Cow position:chr10:23506768-23506401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:261
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):30, 37

               
               
               Conread position:73-359
               
               
               Cow position:chr10:9798478-9798194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:203
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):36, 98

               
               
               Conread position:73-363
               
               
               Cow position:chr10:37444501-37444214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:210
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):41, 115

               
               
               Conread position:73-412
               
               
               Cow position:chr10:27749390-27749726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:232
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):36, 212

               
               
               Conread position:73-449
               
               
               Cow position:chr10:30352559-30352943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 95

               
               
               Conread position:74-305
               
               
               Cow position:chr10:20568852-20569088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):68, 151

               
               
               Conread position:74-508
               
               
               Cow position:chr10:45729206-45728794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:308
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):35, 89

               
               
               Conread position:75-299
               
               
               Cow position:chr10:55097964-55097745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):34, 42

               
               
               Conread position:77-430
               
               
               Cow position:chr10:20552906-20553256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):97, 32

               
               
               Conread position:77-448
               
               
               Cow position:chr10:29920112-29919749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 53

               
               
               Conread position:77-452
               
               
               Cow position:chr10:48257565-48257184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 71

               
               
               Conread position:77-485
               
               
               Cow position:chr10:28039212-28038807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 77

               
               
               Conread position:77-503
               
               
               Cow position:chr10:48255504-48255080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 147

               
               
               Conread position:77-507
               
               
               Cow position:chr10:51288974-51289410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:299
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):34, 178

               
               
               Conread position:77-508
               
               
               Cow position:chr10:23056359-23055926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):97, 31

               
               
               Conread position:77-508
               
               
               Cow position:chr10:28176669-28176235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:301
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):97, 11

               
               
               Conread position:77-508
               
               
               Cow position:chr10:43438589-43439021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 233

               
               
               Conread position:78-388
               
               
               Cow position:chr10:21037030-21037331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:224
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):89, 30

               
               
               Conread position:78-447
               
               
               Cow position:chr10:24277025-24276637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 34

               
               
               Conread position:78-448
               
               
               Cow position:chr10:29279165-29279535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):248, 39

               
               
               Conread position:78-471
               
               
               Cow position:chr10:66752940-66753351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:278
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):29, 248

               
               
               Conread position:78-508
               
               
               Cow position:chr10:24752878-24753303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):270, 113

               
               
               Conread position:79-372
               
               
               Cow position:chr10:33867655-33867386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:207
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):266, 29

               
               
               Conread position:79-389
               
               
               Cow position:chr10:6173078-6173387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 127

               
               
               Conread position:79-449
               
               
               Cow position:chr10:5890049-5889672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 227

               
               
               Conread position:79-449
               
               
               Cow position:chr10:45370779-45371146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):266, 29

               
               
               Conread position:79-500
               
               
               Cow position:chr10:38449577-38449172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:290
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):34, 151

               
               
               Conread position:79-508
               
               
               Cow position:chr10:721020-721457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 146

               
               
               Conread position:81-434
               
               
               Cow position:chr10:2449075-2449426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 164

               
               
               Conread position:81-506
               
               
               Cow position:chr10:64286073-64285635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 152

               
               
               Conread position:81-508
               
               
               Cow position:chr10:58935466-58935020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 83

               
               
               Conread position:83-449
               
               
               Cow position:chr10:47542816-47543166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:259
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):26, 45

               
               
               Conread position:83-508
               
               
               Cow position:chr10:32417091-32417510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):266, 70

               
               
               Conread position:84-426
               
               
               Cow position:chr10:63276117-63276460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 79

               
               
               Conread position:84-508
               
               
               Cow position:chr10:69567580-69567988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:288
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):12, 139

               
               
               Conread position:86-447
               
               
               Cow position:chr10:43508727-43509088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):262, 22

               
               
               Conread position:86-499
               
               
               Cow position:chr10:59152135-59151722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 78

               
               
               Conread position:87-508
               
               
               Cow position:chr10:23576272-23576707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 217

               
               
               Conread position:88-449
               
               
               Cow position:chr10:59844194-59843818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:268
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):14, 109

               
               
               Conread position:89-427
               
               
               Cow position:chr10:20997545-20997219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:240
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):20, 179

               
               
               Conread position:89-504
               
               
               Cow position:chr10:17863315-17863728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 159

               
               
               Conread position:90-449
               
               
               Cow position:chr10:56732779-56733118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:246
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):17, 83

               
               
               Conread position:90-502
               
               
               Cow position:chr10:58746495-58746108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:276
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):19, 97

               
               
               Conread position:93-506
               
               
               Cow position:chr10:28152645-28152231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 23

               
               
               Conread position:94-432
               
               
               Cow position:chr10:36489756-36490092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:231
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):17, 93

               
               
               Conread position:94-449
               
               
               Cow position:chr10:64041822-64042173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:246
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):82, 15

               
               
               Conread position:95-397
               
               
               Cow position:chr10:65071048-65071349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:207
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):16, 207

               
               
               Conread position:95-497
               
               
               Cow position:chr10:66875098-66874683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:273
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):9, 223

               
               
               Conread position:96-394
               
               
               Cow position:chr10:2853905-2853605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:196
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):78, 16

               
               
               Conread position:96-435
               
               
               Cow position:chr10:24561248-24560911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 45

               
               
               Conread position:96-449
               
               
               Cow position:chr10:57059543-57059191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 68

               
               
               Conread position:96-452
               
               
               Cow position:chr10:52113927-52113580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 70

               
               
               Conread position:96-472
               
               
               Cow position:chr10:6491034-6490651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 107

               
               
               Conread position:96-508
               
               
               Cow position:chr10:59153897-59153514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:283
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):147, 16

               
               
               Conread position:97-464
               
               
               Cow position:chr10:30450319-30449958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:252
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):13, 45

               
               
               Conread position:98-341
               
               
               Cow position:chr10:11059945-11060181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:98-364
               
               
               Cow position:chr10:52029362-52029630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):11, 91

               
               
               Conread position:98-449
               
               
               Cow position:chr10:10148394-10148739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:248
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):23, 10

               
               
               Conread position:98-455
               
               
               Cow position:chr10:22341309-22341673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 10

               
               
               Conread position:98-505
               
               
               Cow position:chr10:24313148-24312728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:290
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):13, 199

               
               
               Conread position:98-507
               
               
               Cow position:chr10:44771397-44771813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:285
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):9, 190

               
               
               Conread position:98-508
               
               
               Cow position:chr10:59571638-59572059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 127

               
               
               Conread position:98-508
               
               
               Cow position:chr10:67020371-67020764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:280
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):144, 10

               
               
               Conread position:100-346
               
               
               Cow position:chr10:48388524-48388285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:191
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 118

               
               
               Conread position:103-449
               
               
               Cow position:chr10:62219567-62219924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:239
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):12, 254

               
               
               Conread position:105-434
               
               
               Cow position:chr10:31779519-31779193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):243, 56

               
               
               Conread position:105-508
               
               
               Cow position:chr10:20110189-20109802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:276
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):67, 117

               
               
               Conread position:107-396
               
               
               Cow position:chr10:32030073-32029796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:203
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):238, 57

               
               
               Conread position:110-449
               
               
               Cow position:chr10:33194775-33195132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:246
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):35, 81

               
               
               Conread position:110-452
               
               
               Cow position:chr10:22396009-22396346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 57

               
               
               Conread position:112-277
               
               
               Cow position:chr10:11609363-11609530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:135
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):28, 111

               
               
               Conread position:113-507
               
               
               Cow position:chr10:50183290-50182888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):195, 48

               
               
               Conread position:113-508
               
               
               Cow position:chr10:19591008-19590615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 130

               
               
               Conread position:113-508
               
               
               Cow position:chr10:37709280-37708859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 110

               
               
               Conread position:115-422
               
               
               Cow position:chr10:29589081-29588776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:223
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):115, 132

               
               
               Conread position:116-408
               
               
               Cow position:chr10:13163687-13163399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:195
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):58, 167

               
               
               Conread position:116-504
               
               
               Cow position:chr10:6038575-6038199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 113

               
               
               Conread position:116-504
               
               
               Cow position:chr10:45606667-45606289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):104, 31

               
               
               Conread position:119-369
               
               
               Cow position:chr10:25882189-25882425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):229, 71

               
               
               Conread position:122-448
               
               
               Cow position:chr10:48317190-48316858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):176, 97

               
               
               Conread position:123-372
               
               
               Cow position:chr10:31000836-31000570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:123-443
               
               
               Cow position:chr10:38512941-38513259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:221
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):53, 97

               
               
               Conread position:124-508
               
               
               Cow position:chr10:6435827-6436224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:272
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):224, 172

               
               
               Conread position:125-434
               
               
               Cow position:chr10:47412339-47412031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 99

               
               
               Conread position:125-470
               
               
               Cow position:chr10:38739321-38739641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:250
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):20, 96

               
               
               Conread position:128-502
               
               
               Cow position:chr10:9568853-9568486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:261
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):46, 9

               
               
               Conread position:131-449
               
               
               Cow position:chr10:66194529-66194214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:225
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):266, 141

               
               
               Conread position:131-492
               
               
               Cow position:chr10:33733094-33732744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 90

               
               
               Conread position:133-434
               
               
               Cow position:chr10:46493226-46492919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:218
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):95, 168

               
               
               Conread position:133-508
               
               
               Cow position:chr10:27538292-27538648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:245
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):49, 63

               
               
               Conread position:133-508
               
               
               Cow position:chr10:38429771-38429403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:251
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):40, 92

               
               
               Conread position:140-347
               
               
               Cow position:chr10:41794929-41794720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:153
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):33, 84

               
               
               Conread position:140-434
               
               
               Cow position:chr10:17836733-17837026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:208
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):31, 52

               
               
               Conread position:147-430
               
               
               Cow position:chr10:8219073-8219356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):27, 99

               
               
               Conread position:147-506
               
               
               Cow position:chr10:26145619-26145264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 25

               
               
               Conread position:148-402
               
               
               Cow position:chr10:58399489-58399238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):95, 52

               
               
               Conread position:149-449
               
               
               Cow position:chr10:10119989-10120284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:214
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):27, 5

               
               
               Conread position:150-506
               
               
               Cow position:chr10:29689528-29689186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:255
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):24, 74

               
               
               Conread position:153-449
               
               
               Cow position:chr10:4183988-4184286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 147

               
               
               Conread position:154-505
               
               
               Cow position:chr10:12486065-12486408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):148, 32

               
               
               Conread position:154-508
               
               
               Cow position:chr10:50135008-50134652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):186, 66

               
               
               Conread position:155-482
               
               
               Cow position:chr10:50044847-50044521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 20

               
               
               Conread position:157-449
               
               
               Cow position:chr10:51942588-51942879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):17, 67

               
               
               Conread position:157-507
               
               
               Cow position:chr10:8161305-8161672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:248
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):187, 15

               
               
               Conread position:159-443
               
               
               Cow position:chr10:47690198-47690472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:211
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):190, 9

               
               
               Conread position:159-448
               
               
               Cow position:chr10:68926961-68927238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):185, 13

               
               
               Conread position:159-508
               
               
               Cow position:chr10:35653467-35653835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:253
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):62, 103

               
               
               Conread position:160-423
               
               
               Cow position:chr10:55929999-55930262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):59, 113

               
               
               Conread position:161-449
               
               
               Cow position:chr10:30787808-30787538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:214
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):61, 102

               
               
               Conread position:165-508
               
               
               Cow position:chr10:32834627-32834978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:235
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):34, 132

               
               
               Conread position:166-449
               
               
               Cow position:chr10:61982204-61982477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:189
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):171, 46

               
               
               Conread position:169-508
               
               
               Cow position:chr10:55396167-55395812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:248
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):61, 38

               
               
               Conread position:171-508
               
               
               Cow position:chr10:4109408-4109745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:245
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):64, 17

               
               
               Conread position:172-434
               
               
               Cow position:chr10:11463850-11463592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):201, 119

               
               
               Conread position:172-445
               
               
               Cow position:chr10:22434103-22433824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:193
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):46, 113

               
               
               Conread position:172-448
               
               
               Cow position:chr10:47651119-47651388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:202
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):21, 53

               
               
               Conread position:172-449
               
               
               Cow position:chr10:24375369-24375634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:211
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):176, 53

               
               
               Conread position:172-449
               
               
               Cow position:chr10:45871333-45871605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:187
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):63, 121

               
               
               Conread position:172-468
               
               
               Cow position:chr10:1070323-1070036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:203
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):177, 47

               
               
               Conread position:174-397
               
               
               Cow position:chr10:4148297-4148527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:174-397
               
               
               Cow position:chr10:48513265-48513044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:159
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):154, 51

               
               
               Conread position:174-404
               
               
               Cow position:chr10:39304032-39303801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):171, 45

               
               
               Conread position:174-447
               
               
               Cow position:chr10:19549670-19549399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:193
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):55, 44

               
               
               Conread position:174-448
               
               
               Cow position:chr10:63883771-63884028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:190
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):50, 85

               
               
               Conread position:174-508
               
               
               Cow position:chr10:24422340-24422005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:227
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):41, 12

               
               
               Conread position:175-508
               
               
               Cow position:chr10:64839196-64838884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:233
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):63, 132

               
               
               Conread position:176-505
               
               
               Cow position:chr10:19127088-19126770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:229
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):44, 67

               
               
               Conread position:177-419
               
               
               Cow position:chr10:51221246-51221006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):24, 44

               
               
               Conread position:177-508
               
               
               Cow position:chr10:9656716-9656358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:244
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):38, 9

               
               
               Conread position:181-448
               
               
               Cow position:chr10:4164093-4164359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:193
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):167, 44

               
               
               Conread position:182-389
               
               
               Cow position:chr10:35856523-35856326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):163, 37

               
               
               Conread position:185-508
               
               
               Cow position:chr10:6532322-6531999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:244
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):212, 81

               
               
               Conread position:189-369
               
               
               Cow position:chr10:48408558-48408381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):159, 31

               
               
               Conread position:190-453
               
               
               Cow position:chr10:46184584-46184834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):158, 52

               
               
               Conread position:191-399
               
               
               Cow position:chr10:21016153-21015948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):143, 6

               
               
               Conread position:191-432
               
               
               Cow position:chr10:39587024-39586784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):118, 45

               
               
               Conread position:192-412
               
               
               Cow position:chr10:41254735-41254520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:171
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):24, 90

               
               
               Conread position:192-449
               
               
               Cow position:chr10:67288132-67288381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:177
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):157, 27

               
               
               Conread position:192-485
               
               
               Cow position:chr10:16683977-16683680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 28

               
               
               Conread position:192-502
               
               
               Cow position:chr10:49624597-49624910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:210
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):23, 65

               
               
               Conread position:192-505
               
               
               Cow position:chr10:38376815-38376511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:216
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):155, 27

               
               
               Conread position:193-508
               
               
               Cow position:chr10:2202287-2201968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:226
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):155, 111

               
               
               Conread position:193-508
               
               
               Cow position:chr10:33240840-33240533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):156, 27

               
               
               Conread position:195-507
               
               
               Cow position:chr10:37884954-37884647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):204, 25

               
               
               Conread position:196-449
               
               
               Cow position:chr10:2537935-2538180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:185
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):152, 106

               
               
               Conread position:197-448
               
               
               Cow position:chr10:16986171-16986421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):151, 78

               
               
               Conread position:198-442
               
               
               Cow position:chr10:47724790-47725027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:182
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):28, 86

               
               
               Conread position:199-508
               
               
               Cow position:chr10:6384379-6384692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:214
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):150, 20

               
               
               Conread position:205-497
               
               
               Cow position:chr10:22633775-22633493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:200
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):68, 14

               
               
               Conread position:213-506
               
               
               Cow position:chr10:15874218-15873933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:209
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):105, 8

               
               
               Conread position:214-475
               
               
               Cow position:chr10:9579108-9578844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):7, 12

               
               
               Conread position:215-413
               
               
               Cow position:chr10:27119108-27118914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):130, 157

               
               
               Conread position:215-448
               
               
               Cow position:chr10:6663886-6664123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:178
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):79, 5

               
               
               Conread position:221-448
               
               
               Cow position:chr10:19539957-19539733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):25, 36

               
               
               Conread position:222-508
               
               
               Cow position:chr10:62325482-62325759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):127, 27

               
               
               Conread position:224-397
               
               
               Cow position:chr10:6768841-6768673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):124, 78

               
               
               Conread position:227-423
               
               
               Cow position:chr10:52069614-52069420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):121, 13

               
               
               Conread position:227-449
               
               
               Cow position:chr10:31005148-31004931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:162
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):105, 44

               
               
               Conread position:228-446
               
               
               Cow position:chr10:7383739-7383526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):121, 76

               
               
               Conread position:229-448
               
               
               Cow position:chr10:52881747-52881530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):119, 73

               
               
               Conread position:231-504
               
               
               Cow position:chr10:12100674-12100398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):114, 71

               
               
               Conread position:232-485
               
               
               Cow position:chr10:30741253-30741505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:187
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):11, 71

               
               
               Conread position:234-508
               
               
               Cow position:chr10:15391366-15391638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:189
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):115, 68

               
               
               Conread position:236-434
               
               
               Cow position:chr10:36107538-36107342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:142
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):112, 60

               
               
               Conread position:236-434
               
               
               Cow position:chr10:63628057-63628264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:151
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:237-427
               
               
               Cow position:chr10:34660361-34660174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:141
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):111, 34

               
               
               Conread position:237-434
               
               
               Cow position:chr10:533410-533607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):112, 70

               
               
               Conread position:240-427
               
               
               Cow position:chr10:29328503-29328325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):108, 9

               
               
               Conread position:242-508
               
               
               Cow position:chr10:19098723-19098996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:192
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):106, 65

               
               
               Conread position:242-508
               
               
               Cow position:chr10:23404086-23404347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:185
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):96, 61

               
               
               Conread position:243-447
               
               
               Cow position:chr10:26631296-26631495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:145
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):104, 40

               
               
               Conread position:244-508
               
               
               Cow position:chr10:61510054-61509780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):7, 54

               
               
               Conread position:244-508
               
               
               Cow position:chr10:66311100-66311360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):96, 31

               
               
               Conread position:248-449
               
               
               Cow position:chr10:13315827-13316029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):100, 65

               
               
               Conread position:248-449
               
               
               Cow position:chr10:15309511-15309312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:149
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):97, 51

               
               
               Conread position:249-396
               
               
               Cow position:chr10:34464931-34465078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):96, 58

               
               
               Conread position:249-449
               
               
               Cow position:chr10:3364290-3364092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):100, 10

               
               
               Conread position:249-449
               
               
               Cow position:chr10:33084544-33084350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):96, 44

               
               
               Conread position:250-434
               
               
               Cow position:chr10:22888922-22888739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):99, 43

               
               
               Conread position:250-445
               
               
               Cow position:chr10:42230683-42230879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:144
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):98, 52

               
               
               Conread position:250-505
               
               
               Cow position:chr10:46262081-46262348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:192
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):8, 45

               
               
               Conread position:250-508
               
               
               Cow position:chr10:48178247-48178506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):95, 52

               
               
               Conread position:251-443
               
               
               Cow position:chr10:37426241-37426049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):98, 30

               
               
               Conread position:252-508
               
               
               Cow position:chr10:65558800-65558546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:187
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):97, 44

               
               
               Conread position:253-499
               
               
               Cow position:chr10:22708101-22708338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:182
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):96, 53

               
               
               Conread position:258-477
               
               
               Cow position:chr10:15424955-15425172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):90, 41

               
               
               Conread position:260-508
               
               
               Cow position:chr10:62290726-62290475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:174
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):89, 53

               
               
               Conread position:261-447
               
               
               Cow position:chr10:52167083-52167265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):87, 38

               
               
               Conread position:261-484
               
               
               Cow position:chr10:517195-517411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:161
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):87, 35

               
               
               Conread position:262-507
               
               
               Cow position:chr10:4828117-4827875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:186
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):129, 41

               
               
               Conread position:262-508
               
               
               Cow position:chr10:10137773-10138027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):86, 34

               
               
               Conread position:263-508
               
               
               Cow position:chr10:53364932-53365183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:187
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):86, 15

               
               
               Conread position:265-448
               
               
               Cow position:chr10:49472610-49472427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):82, 41

               
               
               Conread position:265-508
               
               
               Cow position:chr10:11404228-11403991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:177
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):84, 48

               
               
               Conread position:265-508
               
               
               Cow position:chr10:17553090-17553328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:182
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):11, 31

               
               
               Conread position:265-508
               
               
               Cow position:chr10:37706994-37707237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:183
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):84, 41

               
               
               Conread position:268-448
               
               
               Cow position:chr10:35893999-35893817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):5, 14

               
               
               Conread position:271-449
               
               
               Cow position:chr10:24903071-24902894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):43, 9

               
               
               Conread position:272-452
               
               
               Cow position:chr10:37768217-37768396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):77, 16

               
               
               Conread position:276-508
               
               
               Cow position:chr10:59849334-59849575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):72, 37

               
               
               Conread position:278-433
               
               
               Cow position:chr10:48282633-48282477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:115
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):71, 21

               
               
               Conread position:282-480
               
               
               Cow position:chr10:36498138-36498331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):115, 37

               
               
               Conread position:295-508
               
               
               Cow position:chr10:40917111-40917318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):17, 6

               
               
               Conread position:297-506
               
               
               Cow position:chr10:11316891-11317099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:156
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):48, 63

               
               
               Conread position:297-508
               
               
               Cow position:chr10:25822310-25822087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:157
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:303-434
               
               
               Cow position:chr10:705054-704920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:306-449
               
               
               Cow position:chr10:51223184-51223039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:108
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:306-508
               
               
               Cow position:chr10:52244701-52244498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):12, 18

               
               
               Conread position:307-448
               
               
               Cow position:chr10:30121352-30121496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:307-505
               
               
               Cow position:chr10:29091400-29091203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:139
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):41, 145

               
               
               Conread position:310-447
               
               
               Cow position:chr10:13927684-13927822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:106
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):31, 39

               
               
               Conread position:310-447
               
               
               Cow position:chr10:29349561-29349702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:107
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:310-508
               
               
               Cow position:chr10:34700580-34700782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:147
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:313-447
               
               
               Cow position:chr10:23128034-23127898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:106
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:313-499
               
               
               Cow position:chr10:12554213-12554393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:137
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):92, 31

               
               
               Conread position:314-504
               
               
               Cow position:chr10:9794704-9794518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):35, 10

               
               
               Conread position:320-502
               
               
               Cow position:chr10:50498563-50498380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):77, 30

               
               
               Conread position:320-508
               
               
               Cow position:chr10:1108504-1108314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:153
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:335-508
               
               
               Cow position:chr10:32560677-32560850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):64, 31

               
               
               Conread position:338-472
               
               
               Cow position:chr10:13158090-13158229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:109
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:339-508
               
               
               Cow position:chr10:68853629-68853801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:127
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):9, 125

               
               
               Conread position:346-508
               
               
               Cow position:chr10:16547462-16547616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:346-508
               
               
               Cow position:chr10:52069987-52069826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:351-508
               
               
               Cow position:chr10:61426743-61426586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:113
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:352-508
               
               
               Cow position:chr10:59455366-59455528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:353-480
               
               
               Cow position:chr10:23311651-23311779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:97
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:389-508
               
               
               Cow position:chr10:60770701-60770581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:95
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:10-294
               
               
               Cow position:chr11:4384288-4384565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:201
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):99, 26

               
               
               Conread position:11-357
               
               
               Cow position:chr11:56797070-56796736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 30

               
               
               Conread position:11-404
               
               
               Cow position:chr11:53313903-53313521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 34

               
               
               Conread position:11-448
               
               
               Cow position:chr11:65970113-65970551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 216

               
               
               Conread position:11-449
               
               
               Cow position:chr11:29947278-29946817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 206

               
               
               Conread position:11-506
               
               
               Cow position:chr11:27681159-27681654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 35

               
               
               Conread position:11-508
               
               
               Cow position:chr11:44637102-44636605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 149

               
               
               Conread position:12-434
               
               
               Cow position:chr11:4435980-4436400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:297
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):52, 189

               
               
               Conread position:12-448
               
               
               Cow position:chr11:46413230-46413668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 216

               
               
               Conread position:15-373
               
               
               Cow position:chr11:10948810-10948452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:234
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):84, 251

               
               
               Conread position:15-373
               
               
               Cow position:chr11:25760356-25760716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:232
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):45, 37

               
               
               Conread position:15-449
               
               
               Cow position:chr11:40844-41276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):99, 110

               
               
               Conread position:15-449
               
               
               Cow position:chr11:42836297-42835854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:296
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):84, 46

               
               
               Conread position:15-502
               
               
               Cow position:chr11:8841080-8840613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:497
               
               
               Alignm identity:365
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 213

               
               
               Conread position:15-508
               
               
               Cow position:chr11:40818982-40818458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:527
               
               
               Alignm identity:357
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 300

               
               
               Conread position:16-271
               
               
               Cow position:chr11:40250937-40250680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:188
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):95, 206

               
               
               Conread position:16-284
               
               
               Cow position:chr11:47676838-47677116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:188
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):99, 254

               
               
               Conread position:16-285
               
               
               Cow position:chr11:46451282-46451542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:187
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):89, 113

               
               
               Conread position:16-286
               
               
               Cow position:chr11:25336735-25337012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:194
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):53, 224

               
               
               Conread position:16-299
               
               
               Cow position:chr11:84891079-84890801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 48

               
               
               Conread position:16-302
               
               
               Cow position:chr11:65694173-65693886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:211
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):12, 40

               
               
               Conread position:16-305
               
               
               Cow position:chr11:73478287-73478574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):219, 94

               
               
               Conread position:16-308
               
               
               Cow position:chr11:35275959-35276258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 215

               
               
               Conread position:16-311
               
               
               Cow position:chr11:46398786-46399086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:216
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):45, 188

               
               
               Conread position:16-312
               
               
               Cow position:chr11:7120361-7120060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:194
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):101, 289

               
               
               Conread position:16-313
               
               
               Cow position:chr11:74929444-74929746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:16-314
               
               
               Cow position:chr11:40467460-40467155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:219
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):93, 235

               
               
               Conread position:16-335
               
               
               Cow position:chr11:31900712-31901027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 126

               
               
               Conread position:16-338
               
               
               Cow position:chr11:49105717-49106041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:234
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):61, 176

               
               
               Conread position:16-357
               
               
               Cow position:chr11:71846685-71846346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 209

               
               
               Conread position:16-367
               
               
               Cow position:chr11:9731252-9730899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:230
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):101, 250

               
               
               Conread position:16-368
               
               
               Cow position:chr11:83196165-83196512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 52

               
               
               Conread position:16-369
               
               
               Cow position:chr11:17860490-17860140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 275

               
               
               Conread position:16-369
               
               
               Cow position:chr11:62979141-62979506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 301

               
               
               Conread position:16-369
               
               
               Cow position:chr11:68571008-68570643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):99, 131

               
               
               Conread position:16-372
               
               
               Cow position:chr11:28226165-28225809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:226
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):132, 95

               
               
               Conread position:16-373
               
               
               Cow position:chr11:66389402-66389043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:238
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):93, 127

               
               
               Conread position:16-374
               
               
               Cow position:chr11:84967721-84968080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:232
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):114, 14

               
               
               Conread position:16-383
               
               
               Cow position:chr11:2309536-2309902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 45

               
               
               Conread position:16-384
               
               
               Cow position:chr11:10076438-10076799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 138

               
               
               Conread position:16-390
               
               
               Cow position:chr11:8339741-8339369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 205

               
               
               Conread position:16-390
               
               
               Cow position:chr11:27386676-27386302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 172

               
               
               Conread position:16-390
               
               
               Cow position:chr11:75285058-75284681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:244
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):101, 276

               
               
               Conread position:16-397
               
               
               Cow position:chr11:42292171-42291795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:265
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):101, 44

               
               
               Conread position:16-399
               
               
               Cow position:chr11:1849499-1849125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:264
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):95, 33

               
               
               Conread position:16-399
               
               
               Cow position:chr11:8827445-8827825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 14

               
               
               Conread position:16-399
               
               
               Cow position:chr11:16910705-16910313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 283

               
               
               Conread position:16-404
               
               
               Cow position:chr11:70619718-70620096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:272
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):51, 124

               
               
               Conread position:16-408
               
               
               Cow position:chr11:41812248-41811859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 126

               
               
               Conread position:16-408
               
               
               Cow position:chr11:43524286-43524664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:272
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):93, 140

               
               
               Conread position:16-409
               
               
               Cow position:chr11:42232276-42232662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 122

               
               
               Conread position:16-412
               
               
               Cow position:chr11:71168911-71168530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 23

               
               
               Conread position:16-425
               
               
               Cow position:chr11:27939150-27939555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 205

               
               
               Conread position:16-426
               
               
               Cow position:chr11:30165164-30165583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:285
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):53, 158

               
               
               Conread position:16-432
               
               
               Cow position:chr11:1486205-1485782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 322

               
               
               Conread position:16-432
               
               
               Cow position:chr11:38235901-38236330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 220

               
               
               Conread position:16-432
               
               
               Cow position:chr11:50153153-50152734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 8

               
               
               Conread position:16-434
               
               
               Cow position:chr11:17890059-17889648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 92

               
               
               Conread position:16-434
               
               
               Cow position:chr11:58399933-58400330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:287
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):150, 78

               
               
               Conread position:16-439
               
               
               Cow position:chr11:48672372-48672798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):158, 97

               
               
               Conread position:16-440
               
               
               Cow position:chr11:64638859-64638438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 45

               
               
               Conread position:16-441
               
               
               Cow position:chr11:4206962-4207399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 219

               
               
               Conread position:16-446
               
               
               Cow position:chr11:53778280-53778710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 35

               
               
               Conread position:16-448
               
               
               Cow position:chr11:5032112-5031680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 5

               
               
               Conread position:16-448
               
               
               Cow position:chr11:17831569-17831126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 36

               
               
               Conread position:16-448
               
               
               Cow position:chr11:30191827-30192274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 221

               
               
               Conread position:16-448
               
               
               Cow position:chr11:48271859-48272296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 66

               
               
               Conread position:16-448
               
               
               Cow position:chr11:59702148-59702586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 87

               
               
               Conread position:16-449
               
               
               Cow position:chr11:7924921-7924497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 27

               
               
               Conread position:16-449
               
               
               Cow position:chr11:18509345-18508934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 123

               
               
               Conread position:16-449
               
               
               Cow position:chr11:22978199-22977778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 100

               
               
               Conread position:16-449
               
               
               Cow position:chr11:23251940-23251497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 294

               
               
               Conread position:16-449
               
               
               Cow position:chr11:25792029-25791598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 179

               
               
               Conread position:16-449
               
               
               Cow position:chr11:34112927-34113362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 148

               
               
               Conread position:16-449
               
               
               Cow position:chr11:44031663-44032108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 209

               
               
               Conread position:16-449
               
               
               Cow position:chr11:54333996-54334425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 190

               
               
               Conread position:16-449
               
               
               Cow position:chr11:55744137-55744564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 183

               
               
               Conread position:16-449
               
               
               Cow position:chr11:63847515-63847941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 87

               
               
               Conread position:16-449
               
               
               Cow position:chr11:76114316-76114739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 215

               
               
               Conread position:16-450
               
               
               Cow position:chr11:10095006-10095441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 232

               
               
               Conread position:16-451
               
               
               Cow position:chr11:48649619-48650071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:318
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):89, 24

               
               
               Conread position:16-452
               
               
               Cow position:chr11:20601903-20602326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 155

               
               
               Conread position:16-482
               
               
               Cow position:chr11:65409498-65409022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 214

               
               
               Conread position:16-483
               
               
               Cow position:chr11:57047299-57046834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:217
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):95, 121

               
               
               Conread position:16-490
               
               
               Cow position:chr11:84796087-84795612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:494
               
               
               Alignm identity:322
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):75, 171

               
               
               Conread position:16-499
               
               
               Cow position:chr11:47566290-47565791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 306

               
               
               Conread position:16-499
               
               
               Cow position:chr11:59366416-59365928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:499
               
               
               Alignm identity:324
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):51, 146

               
               
               Conread position:16-504
               
               
               Cow position:chr11:19238493-19238016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:496
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 127

               
               
               Conread position:16-506
               
               
               Cow position:chr11:58588007-58588500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:373
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 211

               
               
               Conread position:16-507
               
               
               Cow position:chr11:865960-866454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:340
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):53, 243

               
               
               Conread position:16-507
               
               
               Cow position:chr11:49152604-49153114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:521
               
               
               Alignm identity:370
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 53

               
               
               Conread position:16-508
               
               
               Cow position:chr11:11752851-11752361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:499
               
               
               Alignm identity:353
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 54

               
               
               Conread position:16-508
               
               
               Cow position:chr11:16233248-16232779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:499
               
               
               Alignm identity:362
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):291, 30

               
               
               Conread position:16-508
               
               
               Cow position:chr11:21852620-21852141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:501
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):187, 92

               
               
               Conread position:16-508
               
               
               Cow position:chr11:35881570-35882066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:382
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 211

               
               
               Conread position:16-508
               
               
               Cow position:chr11:38638789-38639274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:358
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):171, 45

               
               
               Conread position:16-508
               
               
               Cow position:chr11:38794207-38794687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 123

               
               
               Conread position:16-508
               
               
               Cow position:chr11:47125235-47125699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:498
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 52

               
               
               Conread position:16-508
               
               
               Cow position:chr11:61427278-61427743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:495
               
               
               Alignm identity:359
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 127

               
               
               Conread position:17-372
               
               
               Cow position:chr11:38810672-38810330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:251
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):92, 56

               
               
               Conread position:17-380
               
               
               Cow position:chr11:81174555-81174911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 279

               
               
               Conread position:17-386
               
               
               Cow position:chr11:40486257-40485902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):333, 37

               
               
               Conread position:17-389
               
               
               Cow position:chr11:21798620-21798965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 13

               
               
               Conread position:17-395
               
               
               Cow position:chr11:33350037-33349659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 272

               
               
               Conread position:17-397
               
               
               Cow position:chr11:4732003-4732386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:263
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):92, 280

               
               
               Conread position:17-439
               
               
               Cow position:chr11:50072642-50073024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):328, 28

               
               
               Conread position:17-448
               
               
               Cow position:chr11:59872591-59873024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 189

               
               
               Conread position:17-505
               
               
               Cow position:chr11:65495663-65495172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:514
               
               
               Alignm identity:341
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):94, 152

               
               
               Conread position:17-507
               
               
               Cow position:chr11:30708157-30708679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:528
               
               
               Alignm identity:365
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 181

               
               
               Conread position:18-300
               
               
               Cow position:chr11:41577339-41577064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:18-362
               
               
               Cow position:chr11:53130481-53130822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 43

               
               
               Conread position:18-369
               
               
               Cow position:chr11:17112961-17112617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 153

               
               
               Conread position:18-397
               
               
               Cow position:chr11:80788245-80787863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 161

               
               
               Conread position:18-408
               
               
               Cow position:chr11:4323032-4323414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 156

               
               
               Conread position:18-415
               
               
               Cow position:chr11:48428748-48429173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:289
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):57, 191

               
               
               Conread position:18-434
               
               
               Cow position:chr11:28692084-28691674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):149, 36

               
               
               Conread position:18-446
               
               
               Cow position:chr11:70609456-70609891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 43

               
               
               Conread position:18-448
               
               
               Cow position:chr11:13499680-13500111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 43

               
               
               Conread position:18-448
               
               
               Cow position:chr11:47169325-47168921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:287
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):93, 45

               
               
               Conread position:18-449
               
               
               Cow position:chr11:1380360-1380772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:284
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):91, 141

               
               
               Conread position:18-449
               
               
               Cow position:chr11:23138406-23137957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 282

               
               
               Conread position:18-449
               
               
               Cow position:chr11:35684833-35684404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 208

               
               
               Conread position:18-451
               
               
               Cow position:chr11:73512754-73512345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 128

               
               
               Conread position:18-469
               
               
               Cow position:chr11:77751100-77750656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):330, 168

               
               
               Conread position:18-469
               
               
               Cow position:chr11:84385971-84385522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):156, 46

               
               
               Conread position:18-496
               
               
               Cow position:chr11:14941934-14941467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:500
               
               
               Alignm identity:332
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):61, 220

               
               
               Conread position:18-507
               
               
               Cow position:chr11:47193199-47193668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:493
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 47

               
               
               Conread position:18-508
               
               
               Cow position:chr11:39115164-39115648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:501
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 22

               
               
               Conread position:18-508
               
               
               Cow position:chr11:42358790-42359268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:502
               
               
               Alignm identity:353
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 80

               
               
               Conread position:18-508
               
               
               Cow position:chr11:53452675-53452194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:497
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 6

               
               
               Conread position:18-508
               
               
               Cow position:chr11:63508104-63508566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:495
               
               
               Alignm identity:330
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):52, 118

               
               
               Conread position:18-508
               
               
               Cow position:chr11:68905384-68904913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:504
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 46

               
               
               Conread position:21-447
               
               
               Cow position:chr11:70484193-70483757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 205

               
               
               Conread position:21-451
               
               
               Cow position:chr11:56518641-56518213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 40

               
               
               Conread position:22-397
               
               
               Cow position:chr11:70383025-70382647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 71

               
               
               Conread position:23-443
               
               
               Cow position:chr11:67246477-67246876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:280
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):93, 66

               
               
               Conread position:23-447
               
               
               Cow position:chr11:76606360-76606767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):326, 81

               
               
               Conread position:25-399
               
               
               Cow position:chr11:51044261-51043887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 48

               
               
               Conread position:27-336
               
               
               Cow position:chr11:43913897-43914197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 123

               
               
               Conread position:27-434
               
               
               Cow position:chr11:43361124-43360702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:293
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):93, 21

               
               
               Conread position:27-449
               
               
               Cow position:chr11:40793026-40792608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 168

               
               
               Conread position:27-505
               
               
               Cow position:chr11:43644426-43643937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:501
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 147

               
               
               Conread position:29-301
               
               
               Cow position:chr11:9253351-9253067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:201
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):47, 119

               
               
               Conread position:30-397
               
               
               Cow position:chr11:30120985-30120618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 57

               
               
               Conread position:30-397
               
               
               Cow position:chr11:46329177-46329543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:248
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):85, 136

               
               
               Conread position:30-432
               
               
               Cow position:chr11:51144395-51144793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 193

               
               
               Conread position:32-448
               
               
               Cow position:chr11:36848622-36849012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:281
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):364, 72

               
               
               Conread position:32-449
               
               
               Cow position:chr11:17278981-17278579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 33

               
               
               Conread position:33-373
               
               
               Cow position:chr11:71021402-71021067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:223
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):76, 19

               
               
               Conread position:34-364
               
               
               Cow position:chr11:9837419-9837088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 144

               
               
               Conread position:37-508
               
               
               Cow position:chr11:18698553-18699045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:498
               
               
               Alignm identity:368
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 195

               
               
               Conread position:39-449
               
               
               Cow position:chr11:28643768-28644184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 107

               
               
               Conread position:39-449
               
               
               Cow position:chr11:39499063-39499454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:277
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):70, 116

               
               
               Conread position:39-450
               
               
               Cow position:chr11:23232826-23232422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 31

               
               
               Conread position:39-506
               
               
               Cow position:chr11:34962749-34963224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 184

               
               
               Conread position:41-447
               
               
               Cow position:chr11:41986355-41985951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 205

               
               
               Conread position:46-361
               
               
               Cow position:chr11:32609688-32610006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:232
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):63, 21

               
               
               Conread position:46-408
               
               
               Cow position:chr11:18588886-18588530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:261
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):63, 33

               
               
               Conread position:46-421
               
               
               Cow position:chr11:70272997-70273375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 27

               
               
               Conread position:46-449
               
               
               Cow position:chr11:71868910-71868506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 128

               
               
               Conread position:46-508
               
               
               Cow position:chr11:62019907-62019430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 355

               
               
               Conread position:47-449
               
               
               Cow position:chr11:46748174-46747764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 181

               
               
               Conread position:48-412
               
               
               Cow position:chr11:33754208-33753849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:258
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):19, 126

               
               
               Conread position:49-358
               
               
               Cow position:chr11:85764650-85764940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):44, 18

               
               
               Conread position:51-449
               
               
               Cow position:chr11:26535473-26535883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:279
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):30, 181

               
               
               Conread position:52-301
               
               
               Cow position:chr11:53719644-53719894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:182
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):12, 149

               
               
               Conread position:52-399
               
               
               Cow position:chr11:3725986-3726335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:240
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):20, 59

               
               
               Conread position:54-300
               
               
               Cow position:chr11:46770753-46770507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):51, 141

               
               
               Conread position:54-346
               
               
               Cow position:chr11:65857559-65857852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:201
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):57, 241

               
               
               Conread position:54-411
               
               
               Cow position:chr11:85723403-85723756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:248
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):55, 136

               
               
               Conread position:55-449
               
               
               Cow position:chr11:87155215-87155616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:263
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):40, 80

               
               
               Conread position:57-425
               
               
               Cow position:chr11:45872611-45872238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 52

               
               
               Conread position:58-508
               
               
               Cow position:chr11:18572509-18572958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 137

               
               
               Conread position:60-346
               
               
               Cow position:chr11:62965845-62965556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:203
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):49, 6

               
               
               Conread position:60-412
               
               
               Cow position:chr11:77766893-77766535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:238
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):18, 66

               
               
               Conread position:60-508
               
               
               Cow position:chr11:56821548-56821087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 207

               
               
               Conread position:65-294
               
               
               Cow position:chr11:10388884-10388654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):34, 123

               
               
               Conread position:65-304
               
               
               Cow position:chr11:7248164-7247928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):44, 123

               
               
               Conread position:65-504
               
               
               Cow position:chr11:73354345-73353896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 237

               
               
               Conread position:66-369
               
               
               Cow position:chr11:48932869-48932571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 160

               
               
               Conread position:66-449
               
               
               Cow position:chr11:11125376-11125759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 162

               
               
               Conread position:66-503
               
               
               Cow position:chr11:77682893-77683322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):177, 44

               
               
               Conread position:66-508
               
               
               Cow position:chr11:41271850-41272293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 162

               
               
               Conread position:66-508
               
               
               Cow position:chr11:65987944-65988376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 155

               
               
               Conread position:67-422
               
               
               Cow position:chr11:65445118-65444773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 109

               
               
               Conread position:67-449
               
               
               Cow position:chr11:48474423-48474800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 73

               
               
               Conread position:68-449
               
               
               Cow position:chr11:52381156-52380775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:260
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):11, 126

               
               
               Conread position:70-305
               
               
               Cow position:chr11:57111590-57111352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):41, 94

               
               
               Conread position:70-395
               
               
               Cow position:chr11:36981285-36981605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:219
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):39, 101

               
               
               Conread position:70-397
               
               
               Cow position:chr11:18244224-18243898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:225
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):44, 217

               
               
               Conread position:70-402
               
               
               Cow position:chr11:37160508-37160838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:235
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):41, 143

               
               
               Conread position:70-404
               
               
               Cow position:chr11:21497258-21497574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:239
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):39, 85

               
               
               Conread position:70-408
               
               
               Cow position:chr11:81300895-81300565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:231
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):39, 161

               
               
               Conread position:70-434
               
               
               Cow position:chr11:23128818-23128458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 16

               
               
               Conread position:70-434
               
               
               Cow position:chr11:33526794-33527134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:258
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):45, 84

               
               
               Conread position:70-449
               
               
               Cow position:chr11:83066213-83066584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 124

               
               
               Conread position:70-462
               
               
               Cow position:chr11:12950225-12949840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 43

               
               
               Conread position:70-484
               
               
               Cow position:chr11:49935024-49934592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 10

               
               
               Conread position:70-508
               
               
               Cow position:chr11:55761597-55762031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 35

               
               
               Conread position:71-343
               
               
               Cow position:chr11:35148887-35149150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:185
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):150, 84

               
               
               Conread position:71-354
               
               
               Cow position:chr11:30110690-30110963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):100, 37

               
               
               Conread position:71-369
               
               
               Cow position:chr11:38193870-38194173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:214
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):40, 154

               
               
               Conread position:71-397
               
               
               Cow position:chr11:42003235-42002904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:240
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):26, 38

               
               
               Conread position:71-435
               
               
               Cow position:chr11:43430728-43430374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 82

               
               
               Conread position:71-443
               
               
               Cow position:chr11:67804471-67804833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):113, 32

               
               
               Conread position:71-449
               
               
               Cow position:chr11:21844414-21844042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 39

               
               
               Conread position:71-451
               
               
               Cow position:chr11:77745535-77745153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 103

               
               
               Conread position:71-452
               
               
               Cow position:chr11:80530089-80530458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 100

               
               
               Conread position:71-472
               
               
               Cow position:chr11:20491292-20491686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):172, 149

               
               
               Conread position:71-505
               
               
               Cow position:chr11:8828910-8828480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 160

               
               
               Conread position:71-506
               
               
               Cow position:chr11:1668393-1668819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 154

               
               
               Conread position:71-508
               
               
               Cow position:chr11:14308357-14308790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 159

               
               
               Conread position:71-508
               
               
               Cow position:chr11:18484441-18484026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 103

               
               
               Conread position:71-508
               
               
               Cow position:chr11:22932243-22931822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:301
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):142, 38

               
               
               Conread position:71-508
               
               
               Cow position:chr11:42519463-42519887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):172, 42

               
               
               Conread position:71-508
               
               
               Cow position:chr11:67600486-67600953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 167

               
               
               Conread position:72-423
               
               
               Cow position:chr11:25332009-25331675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:249
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):39, 67

               
               
               Conread position:72-449
               
               
               Cow position:chr11:7589910-7590285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 153

               
               
               Conread position:72-499
               
               
               Cow position:chr11:50951270-50951701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 154

               
               
               Conread position:72-508
               
               
               Cow position:chr11:83043641-83043192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:300
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):37, 102

               
               
               Conread position:73-331
               
               
               Cow position:chr11:67940427-67940678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:186
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):184, 35

               
               
               Conread position:73-448
               
               
               Cow position:chr11:6234158-6233784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 159

               
               
               Conread position:73-449
               
               
               Cow position:chr11:8988509-8988135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 152

               
               
               Conread position:73-449
               
               
               Cow position:chr11:65827011-65826654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:263
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):36, 80

               
               
               Conread position:73-508
               
               
               Cow position:chr11:32439228-32438797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 110

               
               
               Conread position:73-508
               
               
               Cow position:chr11:38845542-38845112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 156

               
               
               Conread position:73-508
               
               
               Cow position:chr11:45632044-45631605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 152

               
               
               Conread position:74-449
               
               
               Cow position:chr11:58103053-58102665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:265
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):40, 172

               
               
               Conread position:75-508
               
               
               Cow position:chr11:12111745-12111301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 152

               
               
               Conread position:76-448
               
               
               Cow position:chr11:377927-377546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 229

               
               
               Conread position:77-290
               
               
               Cow position:chr11:64845370-64845589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):40, 138

               
               
               Conread position:77-312
               
               
               Cow position:chr11:27462660-27462431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:163
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):32, 99

               
               
               Conread position:77-430
               
               
               Cow position:chr11:80520693-80521027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 148

               
               
               Conread position:77-434
               
               
               Cow position:chr11:45646866-45646512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):268, 33

               
               
               Conread position:77-448
               
               
               Cow position:chr11:62155355-62155734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):138, 31

               
               
               Conread position:77-449
               
               
               Cow position:chr11:30475724-30476095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:262
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):34, 195

               
               
               Conread position:77-449
               
               
               Cow position:chr11:81137946-81138307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:254
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):32, 118

               
               
               Conread position:77-451
               
               
               Cow position:chr11:1362756-1362369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:77-469
               
               
               Cow position:chr11:13043412-13043031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 17

               
               
               Conread position:78-426
               
               
               Cow position:chr11:79728948-79728594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 225

               
               
               Conread position:78-508
               
               
               Cow position:chr11:43646692-43646255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 57

               
               
               Conread position:79-346
               
               
               Cow position:chr11:77207775-77208034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):30, 143

               
               
               Conread position:79-397
               
               
               Cow position:chr11:32377914-32378231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:221
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):36, 214

               
               
               Conread position:79-423
               
               
               Cow position:chr11:68422807-68423133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:244
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):30, 84

               
               
               Conread position:79-508
               
               
               Cow position:chr11:16000655-16001081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 13

               
               
               Conread position:80-449
               
               
               Cow position:chr11:83230657-83230304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:258
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):33, 23

               
               
               Conread position:81-338
               
               
               Cow position:chr11:75748164-75748418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:184
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):30, 160

               
               
               Conread position:81-396
               
               
               Cow position:chr11:9088566-9088255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:222
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):26, 62

               
               
               Conread position:81-505
               
               
               Cow position:chr11:66041002-66041444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:290
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):28, 94

               
               
               Conread position:81-508
               
               
               Cow position:chr11:5648492-5648894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:289
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):20, 138

               
               
               Conread position:82-420
               
               
               Cow position:chr11:40258668-40258344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:244
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):139, 26

               
               
               Conread position:83-508
               
               
               Cow position:chr11:18145074-18144668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 41

               
               
               Conread position:84-397
               
               
               Cow position:chr11:34032464-34032159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):264, 88

               
               
               Conread position:85-428
               
               
               Cow position:chr11:16262299-16261949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 149

               
               
               Conread position:89-300
               
               
               Cow position:chr11:84924359-84924145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 20

               
               
               Conread position:89-430
               
               
               Cow position:chr11:65159709-65159374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:236
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):20, 7

               
               
               Conread position:89-432
               
               
               Cow position:chr11:17192545-17192201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:234
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):20, 133

               
               
               Conread position:89-434
               
               
               Cow position:chr11:47544864-47545213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 136

               
               
               Conread position:89-434
               
               
               Cow position:chr11:63482689-63482349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 209

               
               
               Conread position:89-449
               
               
               Cow position:chr11:36799559-36799211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 20

               
               
               Conread position:89-508
               
               
               Cow position:chr11:11460234-11460627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:278
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):20, 85

               
               
               Conread position:90-338
               
               
               Cow position:chr11:62045136-62045380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):19, 84

               
               
               Conread position:90-508
               
               
               Cow position:chr11:62574261-62573853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 100

               
               
               Conread position:91-397
               
               
               Cow position:chr11:30596735-30597037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:222
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):18, 64

               
               
               Conread position:95-346
               
               
               Cow position:chr11:63516567-63516819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):12, 129

               
               
               Conread position:95-508
               
               
               Cow position:chr11:32071894-32072298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 17

               
               
               Conread position:96-337
               
               
               Cow position:chr11:21819697-21819458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):160, 12

               
               
               Conread position:96-391
               
               
               Cow position:chr11:24584923-24585219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 93

               
               
               Conread position:96-448
               
               
               Cow position:chr11:77128412-77128756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 67

               
               
               Conread position:96-449
               
               
               Cow position:chr11:2917833-2917490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:242
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):5, 13

               
               
               Conread position:96-508
               
               
               Cow position:chr11:16342497-16342073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 126

               
               
               Conread position:96-508
               
               
               Cow position:chr11:45889697-45890114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 218

               
               
               Conread position:98-332
               
               
               Cow position:chr11:31885270-31885500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:139
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):137, 13

               
               
               Conread position:98-333
               
               
               Cow position:chr11:34121505-34121744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):76, 128

               
               
               Conread position:98-404
               
               
               Cow position:chr11:34120944-34121250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:212
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):16, 126

               
               
               Conread position:98-448
               
               
               Cow position:chr11:66188576-66188222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 124

               
               
               Conread position:99-449
               
               
               Cow position:chr11:9221979-9221635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 126

               
               
               Conread position:100-449
               
               
               Cow position:chr11:41549585-41549235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:234
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):222, 125

               
               
               Conread position:103-380
               
               
               Cow position:chr11:26117964-26117695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:198
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):120, 69

               
               
               Conread position:108-408
               
               
               Cow position:chr11:17495988-17495686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:210
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):66, 39

               
               
               Conread position:110-336
               
               
               Cow position:chr11:62808889-62808670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:165
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):186, 0

               
               
               Conread position:110-399
               
               
               Cow position:chr11:57725069-57724778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):60, 187

               
               
               Conread position:110-432
               
               
               Cow position:chr11:82940858-82940545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 63

               
               
               Conread position:110-449
               
               
               Cow position:chr11:26144325-26143999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:242
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):119, 55

               
               
               Conread position:110-449
               
               
               Cow position:chr11:30924912-30925251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:242
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):184, 62

               
               
               Conread position:110-455
               
               
               Cow position:chr11:2083907-2084246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:244
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):112, 59

               
               
               Conread position:110-504
               
               
               Cow position:chr11:47899036-47899421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:275
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):64, 113

               
               
               Conread position:112-485
               
               
               Cow position:chr11:64904757-64905130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 184

               
               
               Conread position:113-364
               
               
               Cow position:chr11:18620043-18619800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:171
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):217, 53

               
               
               Conread position:113-449
               
               
               Cow position:chr11:36659050-36658727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):179, 55

               
               
               Conread position:113-508
               
               
               Cow position:chr11:43526360-43525966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:281
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):31, 60

               
               
               Conread position:114-309
               
               
               Cow position:chr11:41438461-41438261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:115-408
               
               
               Cow position:chr11:10687123-10686831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):72, 111

               
               
               Conread position:116-408
               
               
               Cow position:chr11:18341273-18340985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:213
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):58, 107

               
               
               Conread position:116-455
               
               
               Cow position:chr11:4663273-4662945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:234
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):216, 61

               
               
               Conread position:117-405
               
               
               Cow position:chr11:36113923-36114206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):9, 55

               
               
               Conread position:117-418
               
               
               Cow position:chr11:4610068-4609776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:210
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):68, 106

               
               
               Conread position:117-446
               
               
               Cow position:chr11:36112184-36112513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:241
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):54, 113

               
               
               Conread position:117-507
               
               
               Cow position:chr11:25620629-25620216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:284
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):219, 131

               
               
               Conread position:118-288
               
               
               Cow position:chr11:6329013-6329187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:118-292
               
               
               Cow position:chr11:27722129-27722304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):71, 106

               
               
               Conread position:118-357
               
               
               Cow position:chr11:2514825-2514590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:165
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):64, 106

               
               
               Conread position:118-448
               
               
               Cow position:chr11:32436096-32436429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 24

               
               
               Conread position:118-508
               
               
               Cow position:chr11:33348417-33348024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):104, 177

               
               
               Conread position:121-427
               
               
               Cow position:chr11:2509525-2509231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:211
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):227, 51

               
               
               Conread position:122-389
               
               
               Cow position:chr11:18591662-18591398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:192
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):52, 35

               
               
               Conread position:122-412
               
               
               Cow position:chr11:38874630-38874342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):226, 18

               
               
               Conread position:126-449
               
               
               Cow position:chr11:36238557-36238874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:224
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):27, 39

               
               
               Conread position:127-432
               
               
               Cow position:chr11:81406381-81406088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):261, 93

               
               
               Conread position:127-468
               
               
               Cow position:chr11:19501001-19500677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:226
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):272, 43

               
               
               Conread position:129-449
               
               
               Cow position:chr11:2925512-2925204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:212
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):45, 94

               
               
               Conread position:131-414
               
               
               Cow position:chr11:61859119-61858841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:203
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):43, 95

               
               
               Conread position:132-449
               
               
               Cow position:chr11:15772941-15772617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:223
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):39, 179

               
               
               Conread position:132-457
               
               
               Cow position:chr11:23586417-23586742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:232
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):42, 8

               
               
               Conread position:132-507
               
               
               Cow position:chr11:39462399-39462793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:270
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):38, 100

               
               
               Conread position:132-508
               
               
               Cow position:chr11:82108106-82107745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:252
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):142, 32

               
               
               Conread position:133-310
               
               
               Cow position:chr11:876882-877059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:135
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):12, 7

               
               
               Conread position:140-420
               
               
               Cow position:chr11:36286488-36286763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):208, 48

               
               
               Conread position:140-447
               
               
               Cow position:chr11:65607904-65607594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 82

               
               
               Conread position:143-428
               
               
               Cow position:chr11:49231666-49231949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):31, 97

               
               
               Conread position:145-392
               
               
               Cow position:chr11:57171030-57170791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:180
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):203, 7

               
               
               Conread position:145-508
               
               
               Cow position:chr11:63434264-63433891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 80

               
               
               Conread position:146-438
               
               
               Cow position:chr11:27764948-27765239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 79

               
               
               Conread position:148-452
               
               
               Cow position:chr11:37804756-37804454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:216
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):200, 101

               
               
               Conread position:149-395
               
               
               Cow position:chr11:36058604-36058838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:150-448
               
               
               Cow position:chr11:72375884-72375580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):198, 11

               
               
               Conread position:150-449
               
               
               Cow position:chr11:71493056-71492765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:216
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):54, 11

               
               
               Conread position:155-507
               
               
               Cow position:chr11:52936102-52935725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:252
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):12, 50

               
               
               Conread position:157-392
               
               
               Cow position:chr11:48042232-48041994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:175
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):69, 140

               
               
               Conread position:157-448
               
               
               Cow position:chr11:68912949-68913236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:207
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):58, 15

               
               
               Conread position:157-449
               
               
               Cow position:chr11:41215550-41215829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:196
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):239, 31

               
               
               Conread position:160-434
               
               
               Cow position:chr11:27932079-27932362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:201
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):69, 85

               
               
               Conread position:160-449
               
               
               Cow position:chr11:14470180-14470462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:208
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):52, 62

               
               
               Conread position:161-439
               
               
               Cow position:chr11:9083288-9083563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:196
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):82, 29

               
               
               Conread position:161-449
               
               
               Cow position:chr11:13592548-13592832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:209
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):64, 89

               
               
               Conread position:161-449
               
               
               Cow position:chr11:19592183-19591898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):53, 134

               
               
               Conread position:165-508
               
               
               Cow position:chr11:19501775-19502123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:233
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):68, 55

               
               
               Conread position:167-506
               
               
               Cow position:chr11:78543752-78544083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:229
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):76, 53

               
               
               Conread position:169-420
               
               
               Cow position:chr11:47004170-47004416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:190
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):106, 21

               
               
               Conread position:172-361
               
               
               Cow position:chr11:36672225-36672036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:141
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):58, 124

               
               
               Conread position:172-369
               
               
               Cow position:chr11:33468535-33468726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):176, 11

               
               
               Conread position:172-418
               
               
               Cow position:chr11:38670505-38670746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:177
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):146, 121

               
               
               Conread position:172-419
               
               
               Cow position:chr11:65843266-65843033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:174
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):223, 14

               
               
               Conread position:172-432
               
               
               Cow position:chr11:48383352-48383599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):53, 14

               
               
               Conread position:172-447
               
               
               Cow position:chr11:38334340-38334618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:187
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):69, 107

               
               
               Conread position:172-448
               
               
               Cow position:chr11:71501312-71501037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):43, 17

               
               
               Conread position:172-449
               
               
               Cow position:chr11:34646414-34646686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:200
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):51, 47

               
               
               Conread position:172-449
               
               
               Cow position:chr11:40573511-40573239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:191
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):33, 48

               
               
               Conread position:172-449
               
               
               Cow position:chr11:71341629-71341368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:197
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):173, 32

               
               
               Conread position:172-449
               
               
               Cow position:chr11:83687605-83687337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):176, 18

               
               
               Conread position:172-451
               
               
               Cow position:chr11:9270905-9270628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 50

               
               
               Conread position:172-452
               
               
               Cow position:chr11:61958924-61958645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 110

               
               
               Conread position:172-506
               
               
               Cow position:chr11:52832883-52832573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:236
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):177, 18

               
               
               Conread position:174-309
               
               
               Cow position:chr11:36301253-36301117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:102
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:174-391
               
               
               Cow position:chr11:67136615-67136393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):53, 205

               
               
               Conread position:174-455
               
               
               Cow position:chr11:70086149-70086435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:207
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):41, 131

               
               
               Conread position:174-475
               
               
               Cow position:chr11:70600996-70600706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):48, 123

               
               
               Conread position:174-508
               
               
               Cow position:chr11:69402423-69402096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):142, 46

               
               
               Conread position:175-459
               
               
               Cow position:chr11:66572676-66572393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:192
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):173, 184

               
               
               Conread position:176-404
               
               
               Cow position:chr11:53511908-53512134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:164
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):46, 127

               
               
               Conread position:176-432
               
               
               Cow position:chr11:39118585-39118836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:183
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):134, 31

               
               
               Conread position:176-449
               
               
               Cow position:chr11:70278283-70278016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:193
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):19, 8

               
               
               Conread position:176-449
               
               
               Cow position:chr11:76889875-76890142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:181
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):172, 103

               
               
               Conread position:176-452
               
               
               Cow position:chr11:8545186-8544918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:199
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):222, 64

               
               
               Conread position:177-421
               
               
               Cow position:chr11:41176122-41175880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):172, 43

               
               
               Conread position:177-447
               
               
               Cow position:chr11:70978907-70978641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):61, 47

               
               
               Conread position:178-434
               
               
               Cow position:chr11:21438044-21438290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:182
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):170, 42

               
               
               Conread position:178-452
               
               
               Cow position:chr11:16907214-16906951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:208
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):170, 42

               
               
               Conread position:180-506
               
               
               Cow position:chr11:7002105-7001776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:226
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):82, 39

               
               
               Conread position:180-506
               
               
               Cow position:chr11:41134235-41133907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):168, 111

               
               
               Conread position:180-508
               
               
               Cow position:chr11:31894107-31894427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):63, 92

               
               
               Conread position:180-508
               
               
               Cow position:chr11:75874921-75874597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:229
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):168, 39

               
               
               Conread position:183-449
               
               
               Cow position:chr11:69075743-69076007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):166, 11

               
               
               Conread position:183-469
               
               
               Cow position:chr11:35775172-35775454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:208
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):168, 42

               
               
               Conread position:188-368
               
               
               Cow position:chr11:63499485-63499311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:134
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):37, 109

               
               
               Conread position:188-508
               
               
               Cow position:chr11:71390725-71390399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:232
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):156, 37

               
               
               Conread position:190-369
               
               
               Cow position:chr11:51626804-51626980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):26, 11

               
               
               Conread position:191-506
               
               
               Cow position:chr11:51729130-51729447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 28

               
               
               Conread position:192-384
               
               
               Cow position:chr11:21428151-21427962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):156, 107

               
               
               Conread position:192-408
               
               
               Cow position:chr11:42919385-42919169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):110, 39

               
               
               Conread position:192-448
               
               
               Cow position:chr11:6245164-6245410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:174
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):156, 99

               
               
               Conread position:192-449
               
               
               Cow position:chr11:6202289-6202540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:190
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):156, 38

               
               
               Conread position:192-486
               
               
               Cow position:chr11:40479012-40478717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:218
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):20, 111

               
               
               Conread position:193-504
               
               
               Cow position:chr11:42296774-42296456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:226
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):155, 26

               
               
               Conread position:196-449
               
               
               Cow position:chr11:63435364-63435617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:190
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):152, 24

               
               
               Conread position:196-504
               
               
               Cow position:chr11:28993885-28993577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:231
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):149, 24

               
               
               Conread position:197-426
               
               
               Cow position:chr11:32254371-32254143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):18, 44

               
               
               Conread position:198-438
               
               
               Cow position:chr11:52983525-52983761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:185
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):21, 34

               
               
               Conread position:198-449
               
               
               Cow position:chr11:83925895-83926139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):23, 107

               
               
               Conread position:199-507
               
               
               Cow position:chr11:71806294-71805992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:214
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):145, 20

               
               
               Conread position:200-448
               
               
               Cow position:chr11:86720561-86720322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):149, 20

               
               
               Conread position:200-449
               
               
               Cow position:chr11:4653126-4652876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:179
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):9, 20

               
               
               Conread position:203-449
               
               
               Cow position:chr11:23407315-23407561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:173
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):142, 15

               
               
               Conread position:203-508
               
               
               Cow position:chr11:49057256-49057558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:226
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):142, 16

               
               
               Conread position:204-448
               
               
               Cow position:chr11:7460763-7460519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:171
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):25, 89

               
               
               Conread position:205-448
               
               
               Cow position:chr11:70756333-70756573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):10, 79

               
               
               Conread position:206-449
               
               
               Cow position:chr11:79019201-79018962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):21, 43

               
               
               Conread position:207-508
               
               
               Cow position:chr11:61348745-61349026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:208
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):18, 90

               
               
               Conread position:208-448
               
               
               Cow position:chr11:65767056-65767295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):142, 11

               
               
               Conread position:208-450
               
               
               Cow position:chr11:53462801-53463040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):140, 85

               
               
               Conread position:208-460
               
               
               Cow position:chr11:16540721-16540972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):137, 12

               
               
               Conread position:209-490
               
               
               Cow position:chr11:69307359-69307651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:197
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):27, 113

               
               
               Conread position:209-505
               
               
               Cow position:chr11:51745214-51745495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):34, 11

               
               
               Conread position:211-448
               
               
               Cow position:chr11:70206184-70206414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):122, 36

               
               
               Conread position:211-449
               
               
               Cow position:chr11:48659793-48660031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):129, 14

               
               
               Conread position:211-455
               
               
               Cow position:chr11:52690661-52690419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):137, 93

               
               
               Conread position:213-484
               
               
               Cow position:chr11:485770-485500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):16, 72

               
               
               Conread position:214-368
               
               
               Cow position:chr11:8846634-8846478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):29, 111

               
               
               Conread position:214-448
               
               
               Cow position:chr11:46952814-46953043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:181
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):54, 84

               
               
               Conread position:214-508
               
               
               Cow position:chr11:37372174-37372466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):131, 13

               
               
               Conread position:220-485
               
               
               Cow position:chr11:6041885-6041617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):22, 133

               
               
               Conread position:223-449
               
               
               Cow position:chr11:33345316-33345542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):121, 83

               
               
               Conread position:224-449
               
               
               Cow position:chr11:47837187-47837416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):12, 40

               
               
               Conread position:224-449
               
               
               Cow position:chr11:50472189-50472413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):24, 70

               
               
               Conread position:224-449
               
               
               Cow position:chr11:71807697-71807470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):167, 72

               
               
               Conread position:224-487
               
               
               Cow position:chr11:31422602-31422865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):19, 65

               
               
               Conread position:224-506
               
               
               Cow position:chr11:27719449-27719166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:192
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):51, 97

               
               
               Conread position:227-442
               
               
               Cow position:chr11:31575874-31576087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):15, 82

               
               
               Conread position:227-449
               
               
               Cow position:chr11:41293942-41293721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:159
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):23, 73

               
               
               Conread position:227-449
               
               
               Cow position:chr11:83033360-83033143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):26, 8

               
               
               Conread position:227-508
               
               
               Cow position:chr11:21136688-21136969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 76

               
               
               Conread position:227-508
               
               
               Cow position:chr11:28395346-28395631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:205
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):15, 78

               
               
               Conread position:227-508
               
               
               Cow position:chr11:69392433-69392704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:203
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):16, 83

               
               
               Conread position:228-434
               
               
               Cow position:chr11:42066738-42066946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):6, 13

               
               
               Conread position:228-447
               
               
               Cow position:chr11:14466610-14466392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):117, 13

               
               
               Conread position:228-451
               
               
               Cow position:chr11:3739831-3740051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):120, 21

               
               
               Conread position:228-506
               
               
               Cow position:chr11:26468027-26468300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):117, 13

               
               
               Conread position:228-508
               
               
               Cow position:chr11:31506722-31507003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 225

               
               
               Conread position:229-508
               
               
               Cow position:chr11:63920170-63919892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):119, 52

               
               
               Conread position:230-508
               
               
               Cow position:chr11:67871724-67871448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):168, 11

               
               
               Conread position:235-455
               
               
               Cow position:chr11:31874977-31875195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):115, 31

               
               
               Conread position:236-508
               
               
               Cow position:chr11:44815389-44815659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:186
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):17, 56

               
               
               Conread position:240-449
               
               
               Cow position:chr11:46998874-46999075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):105, 54

               
               
               Conread position:241-508
               
               
               Cow position:chr11:18785982-18785721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):17, 56

               
               
               Conread position:242-413
               
               
               Cow position:chr11:46592358-46592526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):29, 108

               
               
               Conread position:242-447
               
               
               Cow position:chr11:63999198-63998997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):156, 57

               
               
               Conread position:242-448
               
               
               Cow position:chr11:64868123-64867925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:156
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):111, 56

               
               
               Conread position:242-451
               
               
               Cow position:chr11:18587716-18587497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:242-490
               
               
               Cow position:chr11:67174613-67174844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):76, 59

               
               
               Conread position:243-427
               
               
               Cow position:chr11:75965757-75965577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):105, 57

               
               
               Conread position:243-457
               
               
               Cow position:chr11:29659455-29659664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):105, 49

               
               
               Conread position:243-508
               
               
               Cow position:chr11:6194300-6194563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:185
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):102, 60

               
               
               Conread position:244-448
               
               
               Cow position:chr11:26845701-26845499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:144
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):105, 49

               
               
               Conread position:244-473
               
               
               Cow position:chr11:38667924-38667705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):13, 77

               
               
               Conread position:244-508
               
               
               Cow position:chr11:249591-249330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):105, 57

               
               
               Conread position:247-447
               
               
               Cow position:chr11:30787107-30787318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:248-449
               
               
               Cow position:chr11:6633603-6633807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:248-507
               
               
               Cow position:chr11:21398857-21399112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):100, 56

               
               
               Conread position:249-502
               
               
               Cow position:chr11:696447-696199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):181, 7

               
               
               Conread position:249-508
               
               
               Cow position:chr11:30210805-30211060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:192
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):43, 51

               
               
               Conread position:249-508
               
               
               Cow position:chr11:50937849-50937583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):148, 29

               
               
               Conread position:250-399
               
               
               Cow position:chr11:12368596-12368746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):60, 41

               
               
               Conread position:250-448
               
               
               Cow position:chr11:39060701-39060507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:145
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):18, 47

               
               
               Conread position:252-508
               
               
               Cow position:chr11:19259614-19259357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):18, 50

               
               
               Conread position:253-448
               
               
               Cow position:chr11:24599487-24599293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):94, 60

               
               
               Conread position:254-449
               
               
               Cow position:chr11:17676467-17676276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):94, 44

               
               
               Conread position:254-508
               
               
               Cow position:chr11:9368730-9368981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 52

               
               
               Conread position:255-448
               
               
               Cow position:chr11:25861699-25861512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:140
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):85, 15

               
               
               Conread position:256-449
               
               
               Cow position:chr11:7013838-7013651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):141, 43

               
               
               Conread position:256-506
               
               
               Cow position:chr11:9055864-9056110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):58, 46

               
               
               Conread position:258-451
               
               
               Cow position:chr11:67312680-67312879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):60, 13

               
               
               Conread position:260-448
               
               
               Cow position:chr11:35536497-35536682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):88, 33

               
               
               Conread position:260-504
               
               
               Cow position:chr11:19586364-19586612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:188
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:260-508
               
               
               Cow position:chr11:41603780-41603526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:176
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):41, 48

               
               
               Conread position:261-508
               
               
               Cow position:chr11:54244589-54244828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):89, 57

               
               
               Conread position:262-446
               
               
               Cow position:chr11:32398548-32398729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:145
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):86, 40

               
               
               Conread position:262-449
               
               
               Cow position:chr11:62778358-62778538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):137, 40

               
               
               Conread position:263-508
               
               
               Cow position:chr11:17151586-17151826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):166, 60

               
               
               Conread position:266-446
               
               
               Cow position:chr11:33409345-33409168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):83, 38

               
               
               Conread position:266-505
               
               
               Cow position:chr11:84890805-84890556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:185
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:267-451
               
               
               Cow position:chr11:41313740-41313557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):81, 27

               
               
               Conread position:268-508
               
               
               Cow position:chr11:62599130-62599357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:169
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):131, 31

               
               
               Conread position:271-448
               
               
               Cow position:chr11:84977438-84977262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:131
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):78, 15

               
               
               Conread position:271-508
               
               
               Cow position:chr11:27722311-27722548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:183
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 42

               
               
               Conread position:273-506
               
               
               Cow position:chr11:50953644-50953410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:164
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:285-505
               
               
               Cow position:chr11:11785265-11785485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):55, 21

               
               
               Conread position:288-451
               
               
               Cow position:chr11:25119996-25119835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):111, 24

               
               
               Conread position:298-508
               
               
               Cow position:chr11:52402408-52402618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):20, 26

               
               
               Conread position:298-508
               
               
               Cow position:chr11:79884434-79884650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):8, 23

               
               
               Conread position:299-425
               
               
               Cow position:chr11:28884881-28884753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:99
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:302-448
               
               
               Cow position:chr11:39249920-39250067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):47, 114

               
               
               Conread position:304-508
               
               
               Cow position:chr11:35670002-35669791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:154
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):44, 109

               
               
               Conread position:306-434
               
               
               Cow position:chr11:34692805-34692935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:102
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:307-427
               
               
               Cow position:chr11:34106717-34106595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:96
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:307-449
               
               
               Cow position:chr11:33697594-33697733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:110
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):41, 100

               
               
               Conread position:308-451
               
               
               Cow position:chr11:29786544-29786400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:110
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):41, 12

               
               
               Conread position:308-507
               
               
               Cow position:chr11:65958745-65958546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:141
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):41, 27

               
               
               Conread position:308-508
               
               
               Cow position:chr11:48512118-48512318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):43, 57

               
               
               Conread position:309-506
               
               
               Cow position:chr11:77013739-77013943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):39, 58

               
               
               Conread position:309-508
               
               
               Cow position:chr11:18914980-18915185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:310-447
               
               
               Cow position:chr11:48063845-48063706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:104
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:315-503
               
               
               Cow position:chr11:72869857-72869671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):34, 63

               
               
               Conread position:317-449
               
               
               Cow position:chr11:58938782-58938648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:103
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:321-505
               
               
               Cow position:chr11:19606285-19606464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:139
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):28, 46

               
               
               Conread position:328-449
               
               
               Cow position:chr11:47784748-47784871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:96
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:328-508
               
               
               Cow position:chr11:45671394-45671205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):68, 14

               
               
               Conread position:329-451
               
               
               Cow position:chr11:10127688-10127564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:103
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:331-508
               
               
               Cow position:chr11:24216118-24216292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):5, 37

               
               
               Conread position:334-508
               
               
               Cow position:chr11:46784455-46784638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):62, 46

               
               
               Conread position:336-508
               
               
               Cow position:chr11:2419758-2419926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):13, 60

               
               
               Conread position:336-508
               
               
               Cow position:chr11:78818222-78818392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:129
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):67, 41

               
               
               Conread position:340-508
               
               
               Cow position:chr11:62016019-62015850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):9, 57

               
               
               Conread position:343-498
               
               
               Cow position:chr11:15592792-15592630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:127
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):5, 13

               
               
               Conread position:346-506
               
               
               Cow position:chr11:44609558-44609713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:118
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:347-508
               
               
               Cow position:chr11:7143442-7143609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):6, 0

               
               
               Conread position:347-508
               
               
               Cow position:chr11:25320179-25320339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:119
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):50, 107

               
               
               Conread position:347-508
               
               
               Cow position:chr11:48900851-48900684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:352-505
               
               
               Cow position:chr11:29978338-29978181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:121
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:353-508
               
               
               Cow position:chr11:58185882-58186047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:130
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:357-506
               
               
               Cow position:chr11:34136506-34136655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:110
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:357-508
               
               
               Cow position:chr11:40269590-40269443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):45, 20

               
               
               Conread position:359-506
               
               
               Cow position:chr11:31440096-31439954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):40, 92

               
               
               Conread position:359-508
               
               
               Cow position:chr11:45553765-45553908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:116
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:363-508
               
               
               Cow position:chr11:49218338-49218192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:5-295
               
               
               Cow position:chr12:35218771-35218480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:206
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):106, 179

               
               
               Conread position:15-294
               
               
               Cow position:chr12:24440455-24440742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:203
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:15-423
               
               
               Cow position:chr12:47800169-47799774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):299, 51

               
               
               Conread position:15-427
               
               
               Cow position:chr12:19697055-19697454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:288
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):57, 82

               
               
               Conread position:15-448
               
               
               Cow position:chr12:11835890-11836309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 51

               
               
               Conread position:15-504
               
               
               Cow position:chr12:21828728-21829201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:500
               
               
               Alignm identity:329
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):94, 46

               
               
               Conread position:16-278
               
               
               Cow position:chr12:1885444-1885180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):101, 38

               
               
               Conread position:16-279
               
               
               Cow position:chr12:18055698-18055431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:174
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):101, 125

               
               
               Conread position:16-284
               
               
               Cow position:chr12:7127456-7127728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:176
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):101, 248

               
               
               Conread position:16-288
               
               
               Cow position:chr12:3568594-3568862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:189
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):101, 51

               
               
               Conread position:16-292
               
               
               Cow position:chr12:40158592-40158317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):95, 45

               
               
               Conread position:16-294
               
               
               Cow position:chr12:32987341-32987623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):92, 26

               
               
               Conread position:16-294
               
               
               Cow position:chr12:36568403-36568137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):209, 36

               
               
               Conread position:16-303
               
               
               Cow position:chr12:3070754-3071042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:200
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):93, 139

               
               
               Conread position:16-308
               
               
               Cow position:chr12:19039973-19039670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:216
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):53, 163

               
               
               Conread position:16-309
               
               
               Cow position:chr12:42732882-42733182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:188
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:16-354
               
               
               Cow position:chr12:3039159-3039491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:241
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):93, 27

               
               
               Conread position:16-360
               
               
               Cow position:chr12:11583050-11583376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:243
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):90, 57

               
               
               Conread position:16-362
               
               
               Cow position:chr12:464714-464369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:217
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):101, 295

               
               
               Conread position:16-363
               
               
               Cow position:chr12:2669900-2670255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:236
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):50, 72

               
               
               Conread position:16-367
               
               
               Cow position:chr12:9561501-9561148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:228
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):101, 289

               
               
               Conread position:16-367
               
               
               Cow position:chr12:42625728-42625374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:231
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):83, 290

               
               
               Conread position:16-372
               
               
               Cow position:chr12:21419633-21419273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:234
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):101, 291

               
               
               Conread position:16-372
               
               
               Cow position:chr12:25147724-25147371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:233
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):82, 259

               
               
               Conread position:16-373
               
               
               Cow position:chr12:14141167-14141523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):156, 93

               
               
               Conread position:16-373
               
               
               Cow position:chr12:37562897-37563256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:229
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):101, 271

               
               
               Conread position:16-378
               
               
               Cow position:chr12:44014196-44013836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 221

               
               
               Conread position:16-390
               
               
               Cow position:chr12:43533984-43534363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:243
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):101, 295

               
               
               Conread position:16-396
               
               
               Cow position:chr12:7558239-7557897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:269
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):61, 25

               
               
               Conread position:16-397
               
               
               Cow position:chr12:20326419-20326797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 13

               
               
               Conread position:16-397
               
               
               Cow position:chr12:28011255-28010886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 211

               
               
               Conread position:16-399
               
               
               Cow position:chr12:36313510-36313877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:266
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):95, 64

               
               
               Conread position:16-404
               
               
               Cow position:chr12:20312515-20312142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:275
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):95, 14

               
               
               Conread position:16-422
               
               
               Cow position:chr12:34673685-34673291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 136

               
               
               Conread position:16-427
               
               
               Cow position:chr12:21393342-21393761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:287
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):90, 189

               
               
               Conread position:16-432
               
               
               Cow position:chr12:42254305-42254725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 45

               
               
               Conread position:16-434
               
               
               Cow position:chr12:9143036-9143448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 38

               
               
               Conread position:16-434
               
               
               Cow position:chr12:17881516-17881922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 111

               
               
               Conread position:16-446
               
               
               Cow position:chr12:19869116-19869533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 33

               
               
               Conread position:16-446
               
               
               Cow position:chr12:44596170-44595737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 75

               
               
               Conread position:16-447
               
               
               Cow position:chr12:30753370-30753793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 95

               
               
               Conread position:16-448
               
               
               Cow position:chr12:9482651-9482231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:289
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):142, 92

               
               
               Conread position:16-449
               
               
               Cow position:chr12:2286224-2286657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:288
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):45, 179

               
               
               Conread position:16-449
               
               
               Cow position:chr12:7000960-7000529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 109

               
               
               Conread position:16-449
               
               
               Cow position:chr12:7885008-7884605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:284
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):93, 45

               
               
               Conread position:16-449
               
               
               Cow position:chr12:15173463-15173899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:299
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):80, 96

               
               
               Conread position:16-449
               
               
               Cow position:chr12:31959538-31959955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 8

               
               
               Conread position:16-449
               
               
               Cow position:chr12:40910646-40910210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 207

               
               
               Conread position:16-451
               
               
               Cow position:chr12:3196897-3197346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 150

               
               
               Conread position:16-451
               
               
               Cow position:chr12:18944005-18943580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 5

               
               
               Conread position:16-451
               
               
               Cow position:chr12:27563733-27563299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):201, 93

               
               
               Conread position:16-452
               
               
               Cow position:chr12:5632230-5631803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 125

               
               
               Conread position:16-472
               
               
               Cow position:chr12:19865886-19866339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 172

               
               
               Conread position:16-490
               
               
               Cow position:chr12:25312733-25312259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 209

               
               
               Conread position:16-508
               
               
               Cow position:chr12:1006184-1005697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:308
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):58, 44

               
               
               Conread position:16-508
               
               
               Cow position:chr12:30596110-30596603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:504
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 38

               
               
               Conread position:16-508
               
               
               Cow position:chr12:31429912-31429439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:495
               
               
               Alignm identity:359
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 54

               
               
               Conread position:16-508
               
               
               Cow position:chr12:47803799-47804288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:496
               
               
               Alignm identity:361
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 205

               
               
               Conread position:17-339
               
               
               Cow position:chr12:6226986-6226688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:226
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:17-358
               
               
               Cow position:chr12:36012976-36012629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:251
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):47, 170

               
               
               Conread position:17-434
               
               
               Cow position:chr12:5800683-5801104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):293, 93

               
               
               Conread position:17-434
               
               
               Cow position:chr12:30437896-30438298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 141

               
               
               Conread position:17-449
               
               
               Cow position:chr12:6240952-6241395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 209

               
               
               Conread position:17-449
               
               
               Cow position:chr12:35311028-35310609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:283
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):96, 194

               
               
               Conread position:17-449
               
               
               Cow position:chr12:42181493-42181053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 36

               
               
               Conread position:17-451
               
               
               Cow position:chr12:1889943-1889498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 214

               
               
               Conread position:17-469
               
               
               Cow position:chr12:33323853-33323399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 207

               
               
               Conread position:17-471
               
               
               Cow position:chr12:1774018-1773567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):163, 91

               
               
               Conread position:17-508
               
               
               Cow position:chr12:25606342-25606841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 25

               
               
               Conread position:18-298
               
               
               Cow position:chr12:19872087-19872354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:206
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):91, 43

               
               
               Conread position:18-373
               
               
               Cow position:chr12:22571906-22572263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:229
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):99, 287

               
               
               Conread position:18-397
               
               
               Cow position:chr12:41596442-41596842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:267
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):52, 135

               
               
               Conread position:18-447
               
               
               Cow position:chr12:29969225-29969653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):156, 90

               
               
               Conread position:18-447
               
               
               Cow position:chr12:30919082-30919499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 15

               
               
               Conread position:18-448
               
               
               Cow position:chr12:6210521-6210083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 10

               
               
               Conread position:18-449
               
               
               Cow position:chr12:15938618-15938194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 36

               
               
               Conread position:18-449
               
               
               Cow position:chr12:47928863-47929276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:298
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):50, 15

               
               
               Conread position:18-450
               
               
               Cow position:chr12:7960913-7960507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:297
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):93, 44

               
               
               Conread position:18-463
               
               
               Cow position:chr12:27039117-27038653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 36

               
               
               Conread position:18-507
               
               
               Cow position:chr12:27803398-27802906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:367
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 43

               
               
               Conread position:21-447
               
               
               Cow position:chr12:31228234-31228644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):327, 22

               
               
               Conread position:21-449
               
               
               Cow position:chr12:4342072-4341668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 167

               
               
               Conread position:24-408
               
               
               Cow position:chr12:9710553-9710173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 131

               
               
               Conread position:27-397
               
               
               Cow position:chr12:2812882-2813250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:254
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):147, 81

               
               
               Conread position:29-364
               
               
               Cow position:chr12:16851351-16851016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 55

               
               
               Conread position:29-434
               
               
               Cow position:chr12:18572294-18572685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 219

               
               
               Conread position:29-508
               
               
               Cow position:chr12:1223685-1223214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 138

               
               
               Conread position:32-452
               
               
               Cow position:chr12:34473947-34473546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:278
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):270, 14

               
               
               Conread position:35-322
               
               
               Cow position:chr12:35807339-35807631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:217
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):76, 183

               
               
               Conread position:38-508
               
               
               Cow position:chr12:34466330-34465865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 36

               
               
               Conread position:39-343
               
               
               Cow position:chr12:46143489-46143790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 23

               
               
               Conread position:40-446
               
               
               Cow position:chr12:30605485-30605093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:276
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):69, 21

               
               
               Conread position:41-369
               
               
               Cow position:chr12:34385845-34385512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 140

               
               
               Conread position:42-372
               
               
               Cow position:chr12:3578950-3579284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:234
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):35, 73

               
               
               Conread position:46-302
               
               
               Cow position:chr12:22261140-22260892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:188
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):50, 103

               
               
               Conread position:46-347
               
               
               Cow position:chr12:32399869-32400174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):28, 98

               
               
               Conread position:46-379
               
               
               Cow position:chr12:1343422-1343105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:220
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):141, 58

               
               
               Conread position:46-449
               
               
               Cow position:chr12:6719993-6720403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:269
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):22, 50

               
               
               Conread position:46-449
               
               
               Cow position:chr12:35368311-35368718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 138

               
               
               Conread position:55-434
               
               
               Cow position:chr12:29995779-29995403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 174

               
               
               Conread position:56-508
               
               
               Cow position:chr12:24559036-24559493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 193

               
               
               Conread position:57-306
               
               
               Cow position:chr12:12017559-12017813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:193
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):22, 218

               
               
               Conread position:57-427
               
               
               Cow position:chr12:19664830-19664478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:257
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):54, 75

               
               
               Conread position:60-434
               
               
               Cow position:chr12:15530753-15531115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:243
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):288, 104

               
               
               Conread position:64-440
               
               
               Cow position:chr12:32169230-32169607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 11

               
               
               Conread position:65-276
               
               
               Cow position:chr12:17495499-17495286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:65-449
               
               
               Cow position:chr12:20479621-20479262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:264
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):13, 117

               
               
               Conread position:65-469
               
               
               Cow position:chr12:30805548-30805952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 124

               
               
               Conread position:65-472
               
               
               Cow position:chr12:31198461-31198866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 60

               
               
               Conread position:66-308
               
               
               Cow position:chr12:28650651-28650892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):116, 38

               
               
               Conread position:66-368
               
               
               Cow position:chr12:1284766-1284468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:215
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):10, 124

               
               
               Conread position:66-402
               
               
               Cow position:chr12:731231-730908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:220
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):284, 45

               
               
               Conread position:66-434
               
               
               Cow position:chr12:8869188-8868821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 18

               
               
               Conread position:66-439
               
               
               Cow position:chr12:3757343-3756981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:254
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):39, 107

               
               
               Conread position:66-442
               
               
               Cow position:chr12:8943526-8943155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 76

               
               
               Conread position:66-447
               
               
               Cow position:chr12:45820663-45820292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:259
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):45, 83

               
               
               Conread position:66-508
               
               
               Cow position:chr12:33457840-33458274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 61

               
               
               Conread position:67-347
               
               
               Cow position:chr12:32391540-32391820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:208
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):42, 158

               
               
               Conread position:67-460
               
               
               Cow position:chr12:37994030-37993645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 158

               
               
               Conread position:69-449
               
               
               Cow position:chr12:4866511-4866893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 153

               
               
               Conread position:70-434
               
               
               Cow position:chr12:18518369-18518734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 97

               
               
               Conread position:70-448
               
               
               Cow position:chr12:30590475-30590842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:273
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):42, 154

               
               
               Conread position:70-449
               
               
               Cow position:chr12:6411032-6410658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 124

               
               
               Conread position:70-470
               
               
               Cow position:chr12:18769378-18768974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 154

               
               
               Conread position:70-508
               
               
               Cow position:chr12:16543870-16543444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 35

               
               
               Conread position:70-508
               
               
               Cow position:chr12:25619679-25619244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:294
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):45, 237

               
               
               Conread position:70-508
               
               
               Cow position:chr12:29448344-29448778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 16

               
               
               Conread position:71-338
               
               
               Cow position:chr12:12939231-12938956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:197
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):40, 155

               
               
               Conread position:71-448
               
               
               Cow position:chr12:28582793-28582434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 97

               
               
               Conread position:71-503
               
               
               Cow position:chr12:21922135-21922587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:303
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):38, 26

               
               
               Conread position:71-508
               
               
               Cow position:chr12:48415812-48415367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):180, 129

               
               
               Conread position:72-448
               
               
               Cow position:chr12:29780196-29779839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:253
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):276, 23

               
               
               Conread position:73-294
               
               
               Cow position:chr12:1848837-1848611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:166
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):36, 95

               
               
               Conread position:73-508
               
               
               Cow position:chr12:44057207-44057651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:295
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):40, 125

               
               
               Conread position:74-427
               
               
               Cow position:chr12:34007001-34007355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:249
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):35, 184

               
               
               Conread position:74-438
               
               
               Cow position:chr12:22881754-22882121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 53

               
               
               Conread position:75-449
               
               
               Cow position:chr12:5635743-5635377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):112, 145

               
               
               Conread position:76-508
               
               
               Cow position:chr12:9914493-9914934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 95

               
               
               Conread position:77-309
               
               
               Cow position:chr12:29694332-29694108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:167
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):36, 81

               
               
               Conread position:77-475
               
               
               Cow position:chr12:40270381-40269966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:285
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):37, 76

               
               
               Conread position:77-508
               
               
               Cow position:chr12:19715322-19714908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 77

               
               
               Conread position:78-433
               
               
               Cow position:chr12:3950645-3950285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 199

               
               
               Conread position:79-434
               
               
               Cow position:chr12:11056583-11056937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:239
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):35, 146

               
               
               Conread position:79-451
               
               
               Cow position:chr12:41473802-41474167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 92

               
               
               Conread position:79-508
               
               
               Cow position:chr12:5714336-5714771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 142

               
               
               Conread position:82-288
               
               
               Cow position:chr12:4134375-4134588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:155
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:82-440
               
               
               Cow position:chr12:30662241-30661883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 211

               
               
               Conread position:82-447
               
               
               Cow position:chr12:15358038-15358414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:249
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):29, 220

               
               
               Conread position:84-508
               
               
               Cow position:chr12:1504739-1505150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 83

               
               
               Conread position:89-394
               
               
               Cow position:chr12:12178638-12178943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:212
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):20, 139

               
               
               Conread position:89-447
               
               
               Cow position:chr12:18388565-18388217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:251
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):26, 132

               
               
               Conread position:89-508
               
               
               Cow position:chr12:37727864-37728282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 55

               
               
               Conread position:91-357
               
               
               Cow position:chr12:22047189-22047453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):16, 151

               
               
               Conread position:91-449
               
               
               Cow position:chr12:25320642-25320990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:252
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):18, 99

               
               
               Conread position:94-508
               
               
               Cow position:chr12:39465300-39465718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 131

               
               
               Conread position:95-440
               
               
               Cow position:chr12:28559021-28559361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 15

               
               
               Conread position:96-368
               
               
               Cow position:chr12:44846117-44846381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):13, 95

               
               
               Conread position:96-439
               
               
               Cow position:chr12:8104516-8104191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:247
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):78, 16

               
               
               Conread position:96-508
               
               
               Cow position:chr12:12331773-12331375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):146, 14

               
               
               Conread position:96-508
               
               
               Cow position:chr12:37733050-37732643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 13

               
               
               Conread position:97-317
               
               
               Cow position:chr12:18417289-18417516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):12, 34

               
               
               Conread position:98-367
               
               
               Cow position:chr12:27563110-27562835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):13, 216

               
               
               Conread position:98-388
               
               
               Cow position:chr12:35354514-35354797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:195
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):82, 15

               
               
               Conread position:98-449
               
               
               Cow position:chr12:42698496-42698170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:244
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):9, 128

               
               
               Conread position:99-343
               
               
               Cow position:chr12:44439123-44438887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):12, 53

               
               
               Conread position:104-448
               
               
               Cow position:chr12:18766247-18765898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 93

               
               
               Conread position:109-508
               
               
               Cow position:chr12:4162633-4162220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:280
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):25, 6

               
               
               Conread position:110-343
               
               
               Cow position:chr12:17702493-17702258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):37, 56

               
               
               Conread position:110-427
               
               
               Cow position:chr12:28257306-28257002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:215
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):105, 30

               
               
               Conread position:110-443
               
               
               Cow position:chr12:5940083-5940411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:241
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):41, 180

               
               
               Conread position:110-457
               
               
               Cow position:chr12:42283097-42282753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:245
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):51, 192

               
               
               Conread position:113-397
               
               
               Cow position:chr12:40029012-40028731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):102, 75

               
               
               Conread position:113-404
               
               
               Cow position:chr12:24107795-24107511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:214
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):40, 49

               
               
               Conread position:113-507
               
               
               Cow position:chr12:17625075-17624684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:267
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):104, 75

               
               
               Conread position:116-499
               
               
               Cow position:chr12:24024045-24023667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:264
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):232, 21

               
               
               Conread position:116-508
               
               
               Cow position:chr12:30064690-30065067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:279
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):58, 107

               
               
               Conread position:117-423
               
               
               Cow position:chr12:38484651-38484344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:216
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):112, 44

               
               
               Conread position:117-448
               
               
               Cow position:chr12:35780180-35779848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):34, 110

               
               
               Conread position:118-447
               
               
               Cow position:chr12:28213266-28213583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):232, 102

               
               
               Conread position:120-346
               
               
               Cow position:chr12:25820685-25820459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:161
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):19, 77

               
               
               Conread position:121-266
               
               
               Cow position:chr12:17664264-17664407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:113
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):11, 84

               
               
               Conread position:124-449
               
               
               Cow position:chr12:23574524-23574839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:230
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):224, 89

               
               
               Conread position:124-450
               
               
               Cow position:chr12:24211170-24211483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:232
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):42, 99

               
               
               Conread position:127-506
               
               
               Cow position:chr12:34161174-34161554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 61

               
               
               Conread position:128-311
               
               
               Cow position:chr12:37394463-37394657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:129-339
               
               
               Cow position:chr12:6117661-6117869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):45, 17

               
               
               Conread position:132-368
               
               
               Cow position:chr12:30476239-30476477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):43, 171

               
               
               Conread position:132-391
               
               
               Cow position:chr12:12031073-12030811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:188
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):10, 177

               
               
               Conread position:132-506
               
               
               Cow position:chr12:41642197-41642564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:256
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):184, 54

               
               
               Conread position:133-374
               
               
               Cow position:chr12:43582541-43582775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):131, 31

               
               
               Conread position:134-465
               
               
               Cow position:chr12:15162914-15163230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:226
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):214, 93

               
               
               Conread position:136-338
               
               
               Cow position:chr12:44559351-44559551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:143
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):13, 166

               
               
               Conread position:137-342
               
               
               Cow position:chr12:38512075-38511869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):87, 172

               
               
               Conread position:140-508
               
               
               Cow position:chr12:1030750-1031117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 64

               
               
               Conread position:141-432
               
               
               Cow position:chr12:18964158-18963870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):25, 80

               
               
               Conread position:145-431
               
               
               Cow position:chr12:25452670-25452389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:214
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):20, 67

               
               
               Conread position:146-397
               
               
               Cow position:chr12:28748715-28748964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):83, 18

               
               
               Conread position:146-449
               
               
               Cow position:chr12:27037668-27037374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):203, 15

               
               
               Conread position:147-505
               
               
               Cow position:chr12:48425498-48425841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:243
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):27, 76

               
               
               Conread position:149-450
               
               
               Cow position:chr12:45680046-45680354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:207
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):25, 162

               
               
               Conread position:150-449
               
               
               Cow position:chr12:33851140-33851433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):198, 11

               
               
               Conread position:157-390
               
               
               Cow position:chr12:32221447-32221681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:158
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):86, 63

               
               
               Conread position:157-507
               
               
               Cow position:chr12:31947910-31948264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:248
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):191, 29

               
               
               Conread position:158-434
               
               
               Cow position:chr12:42162827-42163101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:193
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):134, 30

               
               
               Conread position:159-431
               
               
               Cow position:chr12:12579236-12578977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:193
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):189, 132

               
               
               Conread position:161-448
               
               
               Cow position:chr12:36544858-36544567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:207
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):138, 58

               
               
               Conread position:161-504
               
               
               Cow position:chr12:30194500-30194842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:242
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):147, 24

               
               
               Conread position:161-508
               
               
               Cow position:chr12:4768715-4769072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:257
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):14, 121

               
               
               Conread position:169-434
               
               
               Cow position:chr12:10491076-10491332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:194
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):53, 17

               
               
               Conread position:172-415
               
               
               Cow position:chr12:3906274-3906515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:186
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):54, 47

               
               
               Conread position:172-434
               
               
               Cow position:chr12:7299666-7299398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:191
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):53, 140

               
               
               Conread position:172-448
               
               
               Cow position:chr12:33976005-33976274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:201
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):176, 19

               
               
               Conread position:172-487
               
               
               Cow position:chr12:32413313-32413629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 48

               
               
               Conread position:172-508
               
               
               Cow position:chr12:17879500-17879152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:232
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):101, 26

               
               
               Conread position:176-384
               
               
               Cow position:chr12:29921975-29921775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):169, 11

               
               
               Conread position:179-449
               
               
               Cow position:chr12:11587576-11587850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:189
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):49, 122

               
               
               Conread position:191-449
               
               
               Cow position:chr12:15050799-15050549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):11, 113

               
               
               Conread position:192-422
               
               
               Cow position:chr12:12637366-12637134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):20, 109

               
               
               Conread position:192-443
               
               
               Cow position:chr12:23855657-23855902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:194
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):37, 30

               
               
               Conread position:193-449
               
               
               Cow position:chr12:23916665-23916918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:188
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):151, 109

               
               
               Conread position:195-503
               
               
               Cow position:chr12:27365751-27366055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):203, 25

               
               
               Conread position:196-434
               
               
               Cow position:chr12:42174240-42174477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):24, 102

               
               
               Conread position:196-447
               
               
               Cow position:chr12:44919860-44920104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):153, 29

               
               
               Conread position:196-457
               
               
               Cow position:chr12:23446541-23446803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:182
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):21, 90

               
               
               Conread position:197-346
               
               
               Cow position:chr12:20354796-20354947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:114
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):112, 84

               
               
               Conread position:197-460
               
               
               Cow position:chr12:42233883-42234146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:190
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):20, 36

               
               
               Conread position:198-449
               
               
               Cow position:chr12:4719773-4720023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:179
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):150, 83

               
               
               Conread position:198-508
               
               
               Cow position:chr12:38774412-38774092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:226
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):150, 98

               
               
               Conread position:199-447
               
               
               Cow position:chr12:3623523-3623768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:176
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):149, 7

               
               
               Conread position:202-383
               
               
               Cow position:chr12:31261781-31261959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):87, 19

               
               
               Conread position:202-406
               
               
               Cow position:chr12:18420302-18420503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):195, 69

               
               
               Conread position:204-427
               
               
               Cow position:chr12:9894616-9894836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):14, 89

               
               
               Conread position:204-482
               
               
               Cow position:chr12:15230981-15230708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):38, 23

               
               
               Conread position:208-448
               
               
               Cow position:chr12:41216046-41215810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):137, 11

               
               
               Conread position:211-434
               
               
               Cow position:chr12:12300761-12300980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):137, 85

               
               
               Conread position:213-449
               
               
               Cow position:chr12:19258122-19258353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:177
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):22, 12

               
               
               Conread position:220-448
               
               
               Cow position:chr12:26217977-26217749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:171
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):120, 74

               
               
               Conread position:220-449
               
               
               Cow position:chr12:10942133-10942363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):10, 83

               
               
               Conread position:222-449
               
               
               Cow position:chr12:9767031-9766801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):27, 80

               
               
               Conread position:222-449
               
               
               Cow position:chr12:45090507-45090276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):73, 167

               
               
               Conread position:224-449
               
               
               Cow position:chr12:4596318-4596540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:164
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):129, 72

               
               
               Conread position:224-507
               
               
               Cow position:chr12:15039123-15038833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:197
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):104, 67

               
               
               Conread position:225-502
               
               
               Cow position:chr12:4020639-4020361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:190
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):18, 101

               
               
               Conread position:227-448
               
               
               Cow position:chr12:46120974-46120757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:154
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):118, 71

               
               
               Conread position:227-449
               
               
               Cow position:chr12:7110056-7110273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):121, 75

               
               
               Conread position:227-508
               
               
               Cow position:chr12:10763122-10763399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:202
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):126, 11

               
               
               Conread position:227-508
               
               
               Cow position:chr12:24116508-24116220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):11, 67

               
               
               Conread position:228-448
               
               
               Cow position:chr12:23836180-23836404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:162
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):71, 53

               
               
               Conread position:228-449
               
               
               Cow position:chr12:15699931-15700156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:160
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):61, 20

               
               
               Conread position:233-508
               
               
               Cow position:chr12:1333089-1333370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):11, 81

               
               
               Conread position:242-508
               
               
               Cow position:chr12:37008833-37008557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:203
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):106, 60

               
               
               Conread position:243-471
               
               
               Cow position:chr12:14325399-14325175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):11, 82

               
               
               Conread position:243-504
               
               
               Cow position:chr12:37137651-37137404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:244-508
               
               
               Cow position:chr12:26575759-26576045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:244-508
               
               
               Cow position:chr12:42918343-42918598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):46, 61

               
               
               Conread position:246-448
               
               
               Cow position:chr12:21780037-21780237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):8, 55

               
               
               Conread position:248-449
               
               
               Cow position:chr12:38126650-38126448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:140
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):79, 48

               
               
               Conread position:248-502
               
               
               Cow position:chr12:31517296-31517036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:195
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):97, 56

               
               
               Conread position:250-447
               
               
               Cow position:chr12:24152216-24152414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):98, 49

               
               
               Conread position:250-464
               
               
               Cow position:chr12:16056981-16056768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):98, 49

               
               
               Conread position:250-505
               
               
               Cow position:chr12:25192931-25193191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):98, 12

               
               
               Conread position:251-505
               
               
               Cow position:chr12:18103731-18103467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):146, 69

               
               
               Conread position:253-449
               
               
               Cow position:chr12:26750077-26749876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:255-463
               
               
               Cow position:chr12:31269034-31269242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):93, 189

               
               
               Conread position:255-494
               
               
               Cow position:chr12:31528969-31528735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):14, 46

               
               
               Conread position:259-506
               
               
               Cow position:chr12:7996301-7996543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):92, 26

               
               
               Conread position:261-449
               
               
               Cow position:chr12:18523453-18523645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):84, 33

               
               
               Conread position:261-449
               
               
               Cow position:chr12:35241213-35241030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):87, 38

               
               
               Conread position:262-506
               
               
               Cow position:chr12:4582836-4583074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):86, 7

               
               
               Conread position:262-508
               
               
               Cow position:chr12:30414057-30413805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):87, 43

               
               
               Conread position:266-448
               
               
               Cow position:chr12:5609616-5609437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):133, 79

               
               
               Conread position:271-502
               
               
               Cow position:chr12:5680580-5680812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:182
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 24

               
               
               Conread position:271-506
               
               
               Cow position:chr12:5658849-5658614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):67, 31

               
               
               Conread position:272-449
               
               
               Cow position:chr12:37514382-37514206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:127
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):77, 39

               
               
               Conread position:277-508
               
               
               Cow position:chr12:42477918-42478144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:172
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):122, 28

               
               
               Conread position:278-508
               
               
               Cow position:chr12:6687798-6688038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):70, 20

               
               
               Conread position:280-504
               
               
               Cow position:chr12:3615909-3616132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):117, 21

               
               
               Conread position:284-450
               
               
               Cow position:chr12:4134990-4135154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):64, 21

               
               
               Conread position:286-485
               
               
               Cow position:chr12:13657832-13657632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):33, 26

               
               
               Conread position:295-447
               
               
               Cow position:chr12:4797220-4797374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:114
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:301-507
               
               
               Cow position:chr12:47486758-47486967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:145
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:307-447
               
               
               Cow position:chr12:45168087-45167946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):41, 123

               
               
               Conread position:307-452
               
               
               Cow position:chr12:29057321-29057468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:308-449
               
               
               Cow position:chr12:4793130-4793273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:109
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:308-455
               
               
               Cow position:chr12:6754129-6754278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:111
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:310-449
               
               
               Cow position:chr12:45092381-45092522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:105
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:311-508
               
               
               Cow position:chr12:9229564-9229363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:147
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:313-508
               
               
               Cow position:chr12:3816424-3816621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):36, 12

               
               
               Conread position:325-508
               
               
               Cow position:chr12:44907967-44908150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:139
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):24, 39

               
               
               Conread position:334-508
               
               
               Cow position:chr12:16850954-16850781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:125
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):13, 150

               
               
               Conread position:338-508
               
               
               Cow position:chr12:39781376-39781206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):10, 113

               
               
               Conread position:340-505
               
               
               Cow position:chr12:23734350-23734510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:130
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):9, 107

               
               
               Conread position:346-503
               
               
               Cow position:chr12:25933657-25933812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:112
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):116, 0

               
               
               Conread position:347-508
               
               
               Cow position:chr12:6666547-6666714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):55, 24

               
               
               Conread position:356-508
               
               
               Cow position:chr12:11081117-11080965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:371-508
               
               
               Cow position:chr12:24681816-24681953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:104
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):31, 80

               
               
               Conread position:395-508
               
               
               Cow position:chr12:8275199-8275310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:92
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:6-508
               
               
               Cow position:chr13:43194485-43193984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:513
               
               
               Alignm identity:372
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):105, 60

               
               
               Conread position:11-486
               
               
               Cow position:chr13:32535959-32535490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):232, 17

               
               
               Conread position:12-506
               
               
               Cow position:chr13:9125980-9125486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:504
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):97, 127

               
               
               Conread position:12-508
               
               
               Cow position:chr13:9803364-9802881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:502
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):231, 100

               
               
               Conread position:12-508
               
               
               Cow position:chr13:34761980-34761497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:318
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):68, 179

               
               
               Conread position:13-449
               
               
               Cow position:chr13:32283425-32282999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:298
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):90, 24

               
               
               Conread position:15-408
               
               
               Cow position:chr13:30651479-30651100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 138

               
               
               Conread position:15-434
               
               
               Cow position:chr13:6153475-6153898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 171

               
               
               Conread position:15-434
               
               
               Cow position:chr13:36771118-36771534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 143

               
               
               Conread position:15-449
               
               
               Cow position:chr13:38329936-38329487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 15

               
               
               Conread position:16-290
               
               
               Cow position:chr13:16270239-16269951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:197
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):16, 127

               
               
               Conread position:16-294
               
               
               Cow position:chr13:60690416-60690703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:203
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:16-295
               
               
               Cow position:chr13:6606717-6607000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):88, 210

               
               
               Conread position:16-309
               
               
               Cow position:chr13:6945676-6945377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:216
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):93, 211

               
               
               Conread position:16-312
               
               
               Cow position:chr13:6664440-6664143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:196
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):101, 276

               
               
               Conread position:16-337
               
               
               Cow position:chr13:37980348-37980660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:219
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):93, 73

               
               
               Conread position:16-338
               
               
               Cow position:chr13:20378039-20378354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):152, 14

               
               
               Conread position:16-343
               
               
               Cow position:chr13:562834-563164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:229
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):80, 212

               
               
               Conread position:16-343
               
               
               Cow position:chr13:1767072-1766744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 79

               
               
               Conread position:16-343
               
               
               Cow position:chr13:20863715-20864037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:221
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):61, 53

               
               
               Conread position:16-343
               
               
               Cow position:chr13:25248841-25249179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:236
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):99, 281

               
               
               Conread position:16-346
               
               
               Cow position:chr13:37945917-37946230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:228
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):131, 92

               
               
               Conread position:16-354
               
               
               Cow position:chr13:5091359-5091702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 24

               
               
               Conread position:16-363
               
               
               Cow position:chr13:47313206-47312875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:235
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):329, 92

               
               
               Conread position:16-367
               
               
               Cow position:chr13:40813432-40813079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:226
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):101, 250

               
               
               Conread position:16-369
               
               
               Cow position:chr13:19178576-19178224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 51

               
               
               Conread position:16-373
               
               
               Cow position:chr13:670927-671288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:238
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):95, 252

               
               
               Conread position:16-373
               
               
               Cow position:chr13:5498117-5497760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:230
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):101, 125

               
               
               Conread position:16-373
               
               
               Cow position:chr13:24931133-24930773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:230
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):86, 290

               
               
               Conread position:16-397
               
               
               Cow position:chr13:21039300-21039675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 45

               
               
               Conread position:16-402
               
               
               Cow position:chr13:37516831-37517220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 292

               
               
               Conread position:16-402
               
               
               Cow position:chr13:42114320-42113938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 34

               
               
               Conread position:16-408
               
               
               Cow position:chr13:45604109-45604504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:281
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):61, 232

               
               
               Conread position:16-411
               
               
               Cow position:chr13:34941354-34941741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 170

               
               
               Conread position:16-412
               
               
               Cow position:chr13:12045038-12045430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):142, 68

               
               
               Conread position:16-415
               
               
               Cow position:chr13:53536000-53536403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 31

               
               
               Conread position:16-419
               
               
               Cow position:chr13:1042653-1043068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 289

               
               
               Conread position:16-421
               
               
               Cow position:chr13:26382928-26383336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 275

               
               
               Conread position:16-427
               
               
               Cow position:chr13:10988771-10989177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):150, 92

               
               
               Conread position:16-427
               
               
               Cow position:chr13:25531487-25531897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 80

               
               
               Conread position:16-434
               
               
               Cow position:chr13:152246-151849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 79

               
               
               Conread position:16-434
               
               
               Cow position:chr13:17622587-17622175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 151

               
               
               Conread position:16-434
               
               
               Cow position:chr13:18835489-18835090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 169

               
               
               Conread position:16-439
               
               
               Cow position:chr13:18351146-18350717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 148

               
               
               Conread position:16-442
               
               
               Cow position:chr13:34263079-34263491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):333, 14

               
               
               Conread position:16-442
               
               
               Cow position:chr13:46516365-46515939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):216, 45

               
               
               Conread position:16-448
               
               
               Cow position:chr13:17158561-17159006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 217

               
               
               Conread position:16-448
               
               
               Cow position:chr13:20879534-20879952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 54

               
               
               Conread position:16-448
               
               
               Cow position:chr13:28683657-28683234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 29

               
               
               Conread position:16-448
               
               
               Cow position:chr13:37981449-37981872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 97

               
               
               Conread position:16-448
               
               
               Cow position:chr13:55843787-55843358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 207

               
               
               Conread position:16-448
               
               
               Cow position:chr13:60429776-60430206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 138

               
               
               Conread position:16-449
               
               
               Cow position:chr13:2774421-2773998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 45

               
               
               Conread position:16-449
               
               
               Cow position:chr13:6974468-6974033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 148

               
               
               Conread position:16-449
               
               
               Cow position:chr13:12875682-12876101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 138

               
               
               Conread position:16-449
               
               
               Cow position:chr13:13089326-13088901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 209

               
               
               Conread position:16-449
               
               
               Cow position:chr13:13321083-13320668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:297
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):73, 125

               
               
               Conread position:16-449
               
               
               Cow position:chr13:15869420-15868985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 50

               
               
               Conread position:16-449
               
               
               Cow position:chr13:20666085-20666515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):158, 188

               
               
               Conread position:16-449
               
               
               Cow position:chr13:26479914-26480333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):97, 45

               
               
               Conread position:16-449
               
               
               Cow position:chr13:35525911-35526324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:294
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):94, 153

               
               
               Conread position:16-449
               
               
               Cow position:chr13:42229622-42229184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):201, 54

               
               
               Conread position:16-451
               
               
               Cow position:chr13:37483967-37484410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 209

               
               
               Conread position:16-452
               
               
               Cow position:chr13:32017220-32017644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 209

               
               
               Conread position:16-473
               
               
               Cow position:chr13:7663126-7663571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 130

               
               
               Conread position:16-506
               
               
               Cow position:chr13:47007436-47007916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:504
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 44

               
               
               Conread position:16-507
               
               
               Cow position:chr13:15446347-15445845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:514
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 33

               
               
               Conread position:16-507
               
               
               Cow position:chr13:32166999-32167498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:353
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 265

               
               
               Conread position:16-507
               
               
               Cow position:chr13:51941032-51940542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:502
               
               
               Alignm identity:364
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 94

               
               
               Conread position:16-508
               
               
               Cow position:chr13:661334-661824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):143, 16

               
               
               Conread position:16-508
               
               
               Cow position:chr13:8838694-8839169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:499
               
               
               Alignm identity:359
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 45

               
               
               Conread position:16-508
               
               
               Cow position:chr13:12233155-12233641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:502
               
               
               Alignm identity:353
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 62

               
               
               Conread position:16-508
               
               
               Cow position:chr13:25434826-25435311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:497
               
               
               Alignm identity:388
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 158

               
               
               Conread position:17-312
               
               
               Cow position:chr13:50079054-50078756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):92, 267

               
               
               Conread position:17-373
               
               
               Cow position:chr13:645613-645971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:226
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):100, 288

               
               
               Conread position:17-395
               
               
               Cow position:chr13:1155406-1155777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 204

               
               
               Conread position:17-409
               
               
               Cow position:chr13:44626676-44626279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:274
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):92, 28

               
               
               Conread position:17-449
               
               
               Cow position:chr13:6616446-6616888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 229

               
               
               Conread position:17-449
               
               
               Cow position:chr13:9142584-9142152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):233, 144

               
               
               Conread position:17-449
               
               
               Cow position:chr13:12546601-12547037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 97

               
               
               Conread position:17-452
               
               
               Cow position:chr13:12448686-12449118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 104

               
               
               Conread position:17-463
               
               
               Cow position:chr13:3015868-3016316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 46

               
               
               Conread position:17-508
               
               
               Cow position:chr13:17820958-17821463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 212

               
               
               Conread position:18-307
               
               
               Cow position:chr13:61170423-61170711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:205
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):93, 47

               
               
               Conread position:18-393
               
               
               Cow position:chr13:41253927-41253549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 124

               
               
               Conread position:18-433
               
               
               Cow position:chr13:31814164-31813763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 27

               
               
               Conread position:18-443
               
               
               Cow position:chr13:311733-311315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 205

               
               
               Conread position:18-446
               
               
               Cow position:chr13:44202290-44201883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 156

               
               
               Conread position:18-449
               
               
               Cow position:chr13:20175040-20174612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 134

               
               
               Conread position:18-449
               
               
               Cow position:chr13:21276156-21275730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 232

               
               
               Conread position:18-449
               
               
               Cow position:chr13:27524962-27525389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 6

               
               
               Conread position:18-449
               
               
               Cow position:chr13:37382112-37381672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 166

               
               
               Conread position:18-449
               
               
               Cow position:chr13:60974376-60973951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):276, 92

               
               
               Conread position:18-451
               
               
               Cow position:chr13:11260547-11260144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):276, 19

               
               
               Conread position:18-503
               
               
               Cow position:chr13:57493883-57494373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:495
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 207

               
               
               Conread position:18-508
               
               
               Cow position:chr13:17886794-17886330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:499
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 27

               
               
               Conread position:20-297
               
               
               Cow position:chr13:34556050-34556315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):90, 41

               
               
               Conread position:20-448
               
               
               Cow position:chr13:25695469-25695895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 265

               
               
               Conread position:21-408
               
               
               Cow position:chr13:52284207-52283824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:271
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):93, 173

               
               
               Conread position:21-434
               
               
               Cow position:chr13:45353340-45352918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):197, 87

               
               
               Conread position:21-508
               
               
               Cow position:chr13:25537939-25537432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:365
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 139

               
               
               Conread position:22-505
               
               
               Cow position:chr13:12521487-12521963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:498
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):150, 82

               
               
               Conread position:27-279
               
               
               Cow position:chr13:38485119-38484870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:182
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):84, 34

               
               
               Conread position:27-449
               
               
               Cow position:chr13:38872683-38873073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:296
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):82, 25

               
               
               Conread position:28-508
               
               
               Cow position:chr13:9974775-9975273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:353
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 63

               
               
               Conread position:29-357
               
               
               Cow position:chr13:5752134-5752464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 12

               
               
               Conread position:29-435
               
               
               Cow position:chr13:46182065-46181677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):319, 37

               
               
               Conread position:29-448
               
               
               Cow position:chr13:2414316-2413902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 75

               
               
               Conread position:30-434
               
               
               Cow position:chr13:18989994-18989609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:278
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):79, 176

               
               
               Conread position:31-395
               
               
               Cow position:chr13:61976677-61977034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:248
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):156, 190

               
               
               Conread position:32-473
               
               
               Cow position:chr13:6759503-6759943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 96

               
               
               Conread position:34-449
               
               
               Cow position:chr13:41807060-41806643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 129

               
               
               Conread position:35-447
               
               
               Cow position:chr13:37521451-37521870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:289
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):70, 14

               
               
               Conread position:36-504
               
               
               Cow position:chr13:23266012-23265548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 135

               
               
               Conread position:39-447
               
               
               Cow position:chr13:13766046-13765663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:277
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):360, 145

               
               
               Conread position:40-397
               
               
               Cow position:chr13:61047485-61047138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:248
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):69, 90

               
               
               Conread position:44-423
               
               
               Cow position:chr13:27314409-27314032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:263
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):60, 35

               
               
               Conread position:46-290
               
               
               Cow position:chr13:24539765-24539519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):65, 19

               
               
               Conread position:46-429
               
               
               Cow position:chr13:45726152-45725783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 105

               
               
               Conread position:46-508
               
               
               Cow position:chr13:6079146-6079608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 176

               
               
               Conread position:46-508
               
               
               Cow position:chr13:60967037-60966574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 124

               
               
               Conread position:49-421
               
               
               Cow position:chr13:18244125-18243761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 16

               
               
               Conread position:54-409
               
               
               Cow position:chr13:54702455-54702097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 65

               
               
               Conread position:54-432
               
               
               Cow position:chr13:15041207-15041584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 248

               
               
               Conread position:54-481
               
               
               Cow position:chr13:46311769-46312172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 137

               
               
               Conread position:56-447
               
               
               Cow position:chr13:18166993-18166605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 132

               
               
               Conread position:57-449
               
               
               Cow position:chr13:19393547-19393163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 23

               
               
               Conread position:57-449
               
               
               Cow position:chr13:60508854-60509249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:270
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):52, 229

               
               
               Conread position:60-426
               
               
               Cow position:chr13:23166839-23167207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 7

               
               
               Conread position:60-499
               
               
               Cow position:chr13:54969565-54969984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:298
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):118, 6

               
               
               Conread position:65-449
               
               
               Cow position:chr13:17970781-17971158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 100

               
               
               Conread position:65-450
               
               
               Cow position:chr13:15622061-15621681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:263
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):44, 69

               
               
               Conread position:65-508
               
               
               Cow position:chr13:6621344-6621778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 166

               
               
               Conread position:65-508
               
               
               Cow position:chr13:20784842-20784389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 156

               
               
               Conread position:66-372
               
               
               Cow position:chr13:1780088-1779778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:229
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):13, 239

               
               
               Conread position:66-404
               
               
               Cow position:chr13:61166204-61166534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:248
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):38, 93

               
               
               Conread position:66-427
               
               
               Cow position:chr13:20649734-20650094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):158, 42

               
               
               Conread position:66-449
               
               
               Cow position:chr13:26261541-26261917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:261
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):43, 247

               
               
               Conread position:66-449
               
               
               Cow position:chr13:48037873-48037494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 97

               
               
               Conread position:66-508
               
               
               Cow position:chr13:54095057-54094622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):282, 120

               
               
               Conread position:67-332
               
               
               Cow position:chr13:14227179-14226917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):48, 130

               
               
               Conread position:67-369
               
               
               Cow position:chr13:19364496-19364197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:198
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):49, 173

               
               
               Conread position:67-425
               
               
               Cow position:chr13:52879662-52879297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:259
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):108, 159

               
               
               Conread position:67-449
               
               
               Cow position:chr13:37985499-37985873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:256
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):44, 142

               
               
               Conread position:68-427
               
               
               Cow position:chr13:8201234-8201590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 154

               
               
               Conread position:69-508
               
               
               Cow position:chr13:24715487-24715044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 41

               
               
               Conread position:70-300
               
               
               Cow position:chr13:5713543-5713318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):40, 101

               
               
               Conread position:70-449
               
               
               Cow position:chr13:9265569-9265955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 217

               
               
               Conread position:70-449
               
               
               Cow position:chr13:11061233-11060858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:265
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):9, 39

               
               
               Conread position:70-508
               
               
               Cow position:chr13:25927041-25926583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 208

               
               
               Conread position:70-508
               
               
               Cow position:chr13:42200867-42200415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 123

               
               
               Conread position:71-307
               
               
               Cow position:chr13:43629532-43629766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):38, 15

               
               
               Conread position:71-333
               
               
               Cow position:chr13:7262641-7262377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):39, 135

               
               
               Conread position:71-372
               
               
               Cow position:chr13:48251744-48252023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:212
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):38, 117

               
               
               Conread position:71-422
               
               
               Cow position:chr13:29631100-29630755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 38

               
               
               Conread position:71-434
               
               
               Cow position:chr13:9246962-9246618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:258
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):40, 103

               
               
               Conread position:71-446
               
               
               Cow position:chr13:52285063-52284690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 188

               
               
               Conread position:71-449
               
               
               Cow position:chr13:23856463-23856082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 63

               
               
               Conread position:71-449
               
               
               Cow position:chr13:43594868-43595232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:264
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):40, 116

               
               
               Conread position:71-505
               
               
               Cow position:chr13:33282261-33281821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 157

               
               
               Conread position:71-507
               
               
               Cow position:chr13:16343934-16343506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 59

               
               
               Conread position:71-508
               
               
               Cow position:chr13:4664613-4665055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 156

               
               
               Conread position:71-508
               
               
               Cow position:chr13:9665323-9664877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 246

               
               
               Conread position:71-508
               
               
               Cow position:chr13:14063280-14063726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:308
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):66, 39

               
               
               Conread position:71-508
               
               
               Cow position:chr13:15945748-15945288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 248

               
               
               Conread position:71-508
               
               
               Cow position:chr13:34995078-34995517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 126

               
               
               Conread position:72-316
               
               
               Cow position:chr13:54418479-54418230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):37, 173

               
               
               Conread position:72-442
               
               
               Cow position:chr13:13176896-13176527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 91

               
               
               Conread position:74-364
               
               
               Cow position:chr13:22115948-22115650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):37, 113

               
               
               Conread position:74-434
               
               
               Cow position:chr13:15974855-15974503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 97

               
               
               Conread position:75-404
               
               
               Cow position:chr13:46636887-46637206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:224
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):26, 75

               
               
               Conread position:75-469
               
               
               Cow position:chr13:7076500-7076107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 119

               
               
               Conread position:76-434
               
               
               Cow position:chr13:46736446-46736102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:246
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):9, 79

               
               
               Conread position:77-388
               
               
               Cow position:chr13:60487214-60487527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:223
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):32, 156

               
               
               Conread position:77-393
               
               
               Cow position:chr13:24376732-24376421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:220
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):32, 145

               
               
               Conread position:77-403
               
               
               Cow position:chr13:60329987-60329676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 9

               
               
               Conread position:77-410
               
               
               Cow position:chr13:33631362-33631039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 145

               
               
               Conread position:77-426
               
               
               Cow position:chr13:5278946-5279308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:253
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):24, 98

               
               
               Conread position:77-508
               
               
               Cow position:chr13:1959251-1958820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 147

               
               
               Conread position:77-508
               
               
               Cow position:chr13:10932794-10932368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 148

               
               
               Conread position:77-508
               
               
               Cow position:chr13:12926032-12925591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 237

               
               
               Conread position:77-508
               
               
               Cow position:chr13:22886750-22887177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 147

               
               
               Conread position:78-387
               
               
               Cow position:chr13:2462991-2463301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:223
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):145, 6

               
               
               Conread position:78-449
               
               
               Cow position:chr13:10924665-10925048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:272
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):29, 53

               
               
               Conread position:78-507
               
               
               Cow position:chr13:30510302-30509879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 150

               
               
               Conread position:79-308
               
               
               Cow position:chr13:2339669-2339443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):30, 141

               
               
               Conread position:79-378
               
               
               Cow position:chr13:16024828-16024532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:214
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):32, 69

               
               
               Conread position:79-448
               
               
               Cow position:chr13:3315433-3315803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 132

               
               
               Conread position:79-449
               
               
               Cow position:chr13:55673965-55674337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 146

               
               
               Conread position:79-504
               
               
               Cow position:chr13:49848157-49847743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 70

               
               
               Conread position:79-508
               
               
               Cow position:chr13:20466055-20466473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):164, 33

               
               
               Conread position:79-508
               
               
               Cow position:chr13:46284377-46284795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:302
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):20, 101

               
               
               Conread position:80-439
               
               
               Cow position:chr13:8524382-8524737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 84

               
               
               Conread position:81-368
               
               
               Cow position:chr13:41154808-41155080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:208
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):28, 68

               
               
               Conread position:82-343
               
               
               Cow position:chr13:6975553-6975816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:188
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):27, 112

               
               
               Conread position:82-433
               
               
               Cow position:chr13:43184635-43184994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 124

               
               
               Conread position:82-508
               
               
               Cow position:chr13:12283072-12282632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:296
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):92, 28

               
               
               Conread position:82-508
               
               
               Cow position:chr13:37818522-37818950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:287
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):15, 28

               
               
               Conread position:86-505
               
               
               Cow position:chr13:12207276-12206859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 136

               
               
               Conread position:87-505
               
               
               Cow position:chr13:29814773-29814368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 59

               
               
               Conread position:88-474
               
               
               Cow position:chr13:54864806-54865160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:261
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):28, 65

               
               
               Conread position:89-350
               
               
               Cow position:chr13:54093970-54093716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):20, 82

               
               
               Conread position:89-364
               
               
               Cow position:chr13:30026343-30026066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:206
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):16, 98

               
               
               Conread position:89-434
               
               
               Cow position:chr13:24369815-24369468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 137

               
               
               Conread position:89-434
               
               
               Cow position:chr13:47963971-47964295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 67

               
               
               Conread position:89-508
               
               
               Cow position:chr13:21241862-21242281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 133

               
               
               Conread position:90-451
               
               
               Cow position:chr13:11096401-11096051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 100

               
               
               Conread position:91-315
               
               
               Cow position:chr13:11947500-11947736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:164
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):23, 224

               
               
               Conread position:91-447
               
               
               Cow position:chr13:19033775-19033431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:240
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):11, 59

               
               
               Conread position:91-448
               
               
               Cow position:chr13:54345005-54344653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:252
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):14, 224

               
               
               Conread position:91-508
               
               
               Cow position:chr13:11767817-11768232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):258, 22

               
               
               Conread position:95-426
               
               
               Cow position:chr13:9643661-9643993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 14

               
               
               Conread position:95-447
               
               
               Cow position:chr13:15281716-15282062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 15

               
               
               Conread position:96-448
               
               
               Cow position:chr13:35653870-35654218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:240
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):15, 108

               
               
               Conread position:96-451
               
               
               Cow position:chr13:15192671-15193017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 78

               
               
               Conread position:96-472
               
               
               Cow position:chr13:55315966-55316345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:264
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):13, 125

               
               
               Conread position:96-473
               
               
               Cow position:chr13:35718911-35719290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:268
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):19, 133

               
               
               Conread position:96-506
               
               
               Cow position:chr13:1558309-1558699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 78

               
               
               Conread position:96-508
               
               
               Cow position:chr13:34261455-34261030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 97

               
               
               Conread position:97-508
               
               
               Cow position:chr13:10845815-10845413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 124

               
               
               Conread position:98-432
               
               
               Cow position:chr13:40491453-40491104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:250
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):9, 202

               
               
               Conread position:98-434
               
               
               Cow position:chr13:13465569-13465880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:236
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):11, 73

               
               
               Conread position:98-499
               
               
               Cow position:chr13:60650700-60651085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 36

               
               
               Conread position:98-505
               
               
               Cow position:chr13:5263065-5263481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:289
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):11, 61

               
               
               Conread position:98-508
               
               
               Cow position:chr13:20839784-20839375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 10

               
               
               Conread position:99-508
               
               
               Cow position:chr13:2192924-2192532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:285
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):126, 10

               
               
               Conread position:99-508
               
               
               Cow position:chr13:18491814-18491402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 35

               
               
               Conread position:100-446
               
               
               Cow position:chr13:43919036-43919387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:239
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):9, 100

               
               
               Conread position:105-452
               
               
               Cow position:chr13:19022489-19022139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:246
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):59, 8

               
               
               Conread position:110-395
               
               
               Cow position:chr13:51014973-51015252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:196
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):64, 184

               
               
               Conread position:110-425
               
               
               Cow position:chr13:52227893-52228205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:220
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):64, 86

               
               
               Conread position:110-434
               
               
               Cow position:chr13:48598111-48597795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:215
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):287, 54

               
               
               Conread position:112-432
               
               
               Cow position:chr13:59170862-59170542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):112, 52

               
               
               Conread position:113-351
               
               
               Cow position:chr13:51108695-51108462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:170
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):103, 71

               
               
               Conread position:113-449
               
               
               Cow position:chr13:37592734-37593076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 191

               
               
               Conread position:113-451
               
               
               Cow position:chr13:46112171-46111838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:243
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):115, 73

               
               
               Conread position:113-505
               
               
               Cow position:chr13:8245128-8245516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 123

               
               
               Conread position:116-397
               
               
               Cow position:chr13:61188736-61188457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:198
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):58, 38

               
               
               Conread position:116-433
               
               
               Cow position:chr13:61990133-61990437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:228
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):58, 74

               
               
               Conread position:116-449
               
               
               Cow position:chr13:547689-547366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:221
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):58, 43

               
               
               Conread position:116-507
               
               
               Cow position:chr13:21627683-21628067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:269
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):153, 56

               
               
               Conread position:117-298
               
               
               Cow position:chr13:2302638-2302821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):57, 21

               
               
               Conread position:117-449
               
               
               Cow position:chr13:24230413-24230085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 179

               
               
               Conread position:117-507
               
               
               Cow position:chr13:52749288-52749667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:275
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):231, 15

               
               
               Conread position:118-449
               
               
               Cow position:chr13:9900349-9900030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:226
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):8, 23

               
               
               Conread position:118-449
               
               
               Cow position:chr13:26369725-26369395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:225
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):198, 180

               
               
               Conread position:120-502
               
               
               Cow position:chr13:8652240-8652614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 80

               
               
               Conread position:125-368
               
               
               Cow position:chr13:22276974-22277225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):51, 152

               
               
               Conread position:126-449
               
               
               Cow position:chr13:15991031-15991360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 184

               
               
               Conread position:126-449
               
               
               Cow position:chr13:21283515-21283833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:232
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):50, 97

               
               
               Conread position:129-284
               
               
               Cow position:chr13:22025521-22025675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:119
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:130-370
               
               
               Cow position:chr13:62474612-62474848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:181
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):44, 94

               
               
               Conread position:132-455
               
               
               Cow position:chr13:14771646-14771317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):44, 180

               
               
               Conread position:133-434
               
               
               Cow position:chr13:55583383-55583084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:217
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):37, 59

               
               
               Conread position:134-449
               
               
               Cow position:chr13:11644116-11643810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:219
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):214, 20

               
               
               Conread position:135-469
               
               
               Cow position:chr13:52055414-52055741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:240
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):37, 101

               
               
               Conread position:135-507
               
               
               Cow position:chr13:19188486-19188110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 174

               
               
               Conread position:136-434
               
               
               Cow position:chr13:5758164-5758456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):212, 52

               
               
               Conread position:145-372
               
               
               Cow position:chr13:4420519-4420291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):70, 153

               
               
               Conread position:145-448
               
               
               Cow position:chr13:44003893-44003573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:225
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):11, 43

               
               
               Conread position:146-449
               
               
               Cow position:chr13:20231034-20231319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:206
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):182, 15

               
               
               Conread position:147-440
               
               
               Cow position:chr13:15110489-15110194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):161, 14

               
               
               Conread position:148-469
               
               
               Cow position:chr13:46430132-46430452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:225
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):103, 219

               
               
               Conread position:154-305
               
               
               Cow position:chr13:22030251-22030102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:112
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):68, 34

               
               
               Conread position:154-342
               
               
               Cow position:chr13:39699971-39699786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):20, 70

               
               
               Conread position:157-364
               
               
               Cow position:chr13:7790174-7789964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):135, 62

               
               
               Conread position:157-397
               
               
               Cow position:chr13:13954228-13954469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):62, 142

               
               
               Conread position:157-508
               
               
               Cow position:chr13:47188602-47188256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 10

               
               
               Conread position:157-508
               
               
               Cow position:chr13:49022710-49023071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:258
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):17, 66

               
               
               Conread position:159-439
               
               
               Cow position:chr13:32657636-32657919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 146

               
               
               Conread position:162-508
               
               
               Cow position:chr13:29831278-29831632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:255
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):53, 143

               
               
               Conread position:164-434
               
               
               Cow position:chr13:18999695-18999422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):57, 96

               
               
               Conread position:164-446
               
               
               Cow position:chr13:43829406-43829118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):7, 30

               
               
               Conread position:167-369
               
               
               Cow position:chr13:20128815-20128618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):68, 53

               
               
               Conread position:168-448
               
               
               Cow position:chr13:49520673-49520950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:195
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):177, 52

               
               
               Conread position:169-507
               
               
               Cow position:chr13:20180565-20180229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 134

               
               
               Conread position:172-360
               
               
               Cow position:chr13:16711775-16711588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):52, 133

               
               
               Conread position:172-400
               
               
               Cow position:chr13:6931060-6930836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:160
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):57, 83

               
               
               Conread position:172-434
               
               
               Cow position:chr13:26698352-26698612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):66, 47

               
               
               Conread position:172-448
               
               
               Cow position:chr13:20580050-20579784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):183, 32

               
               
               Conread position:172-450
               
               
               Cow position:chr13:6441955-6442235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:193
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):31, 130

               
               
               Conread position:172-469
               
               
               Cow position:chr13:54388876-54389168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:208
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):173, 27

               
               
               Conread position:172-507
               
               
               Cow position:chr13:9800654-9800317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:243
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):16, 73

               
               
               Conread position:172-508
               
               
               Cow position:chr13:8374627-8374966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:236
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):173, 47

               
               
               Conread position:172-508
               
               
               Cow position:chr13:18058104-18058452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:244
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):136, 21

               
               
               Conread position:172-508
               
               
               Cow position:chr13:20473546-20473880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:239
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):177, 47

               
               
               Conread position:172-508
               
               
               Cow position:chr13:33975562-33975245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:232
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):177, 124

               
               
               Conread position:172-508
               
               
               Cow position:chr13:50739311-50738983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:230
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):79, 49

               
               
               Conread position:173-434
               
               
               Cow position:chr13:37640730-37640475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:192
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):42, 69

               
               
               Conread position:174-449
               
               
               Cow position:chr13:20360413-20360150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:195
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):174, 46

               
               
               Conread position:174-449
               
               
               Cow position:chr13:28552739-28552461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):55, 255

               
               
               Conread position:174-507
               
               
               Cow position:chr13:23512510-23512176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:232
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):174, 117

               
               
               Conread position:174-507
               
               
               Cow position:chr13:46044295-46043970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:223
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):174, 27

               
               
               Conread position:178-451
               
               
               Cow position:chr13:11321477-11321748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:182
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):140, 42

               
               
               Conread position:178-452
               
               
               Cow position:chr13:51115889-51116157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:192
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):171, 42

               
               
               Conread position:183-506
               
               
               Cow position:chr13:12745805-12745487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):166, 37

               
               
               Conread position:187-471
               
               
               Cow position:chr13:25579057-25579341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):35, 67

               
               
               Conread position:188-411
               
               
               Cow position:chr13:25381091-25380872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:159
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):34, 104

               
               
               Conread position:188-508
               
               
               Cow position:chr13:33160863-33161181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:215
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):19, 34

               
               
               Conread position:190-405
               
               
               Cow position:chr13:5060872-5060662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:149
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):158, 101

               
               
               Conread position:192-419
               
               
               Cow position:chr13:57325976-57326199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):51, 27

               
               
               Conread position:192-450
               
               
               Cow position:chr13:11202157-11201911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):41, 81

               
               
               Conread position:192-508
               
               
               Cow position:chr13:21563867-21563540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:236
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):50, 28

               
               
               Conread position:197-508
               
               
               Cow position:chr13:1569043-1568729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:213
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):180, 22

               
               
               Conread position:198-420
               
               
               Cow position:chr13:50713321-50713110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):18, 60

               
               
               Conread position:198-449
               
               
               Cow position:chr13:14576325-14576084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):150, 22

               
               
               Conread position:198-471
               
               
               Cow position:chr13:18995247-18994977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):52, 102

               
               
               Conread position:198-508
               
               
               Cow position:chr13:40464336-40464042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):151, 22

               
               
               Conread position:199-397
               
               
               Cow position:chr13:27550857-27550663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:142
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):149, 32

               
               
               Conread position:200-473
               
               
               Cow position:chr13:19240553-19240279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:194
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):140, 94

               
               
               Conread position:203-506
               
               
               Cow position:chr13:22075787-22075485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 17

               
               
               Conread position:203-506
               
               
               Cow position:chr13:56678129-56677837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:208
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):145, 44

               
               
               Conread position:204-508
               
               
               Cow position:chr13:47322291-47322597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 104

               
               
               Conread position:207-427
               
               
               Cow position:chr13:11079612-11079402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):38, 7

               
               
               Conread position:209-393
               
               
               Cow position:chr13:15964429-15964244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:133
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):21, 166

               
               
               Conread position:209-425
               
               
               Cow position:chr13:60389379-60389593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):27, 92

               
               
               Conread position:209-508
               
               
               Cow position:chr13:43166924-43167219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:200
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):34, 11

               
               
               Conread position:210-449
               
               
               Cow position:chr13:55728006-55727773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):138, 9

               
               
               Conread position:210-506
               
               
               Cow position:chr13:49457781-49457499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:216
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):187, 70

               
               
               Conread position:210-507
               
               
               Cow position:chr13:49200743-49200454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:212
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):9, 13

               
               
               Conread position:216-508
               
               
               Cow position:chr13:49796118-49795833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:201
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):5, 14

               
               
               Conread position:217-449
               
               
               Cow position:chr13:24110586-24110351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:172
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):85, 39

               
               
               Conread position:220-448
               
               
               Cow position:chr13:9082907-9083137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):18, 64

               
               
               Conread position:220-449
               
               
               Cow position:chr13:3989301-3989075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:164
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):88, 196

               
               
               Conread position:224-393
               
               
               Cow position:chr13:22227627-22227793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):119, 70

               
               
               Conread position:224-449
               
               
               Cow position:chr13:54128499-54128724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):49, 73

               
               
               Conread position:224-449
               
               
               Cow position:chr13:56034765-56034988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):124, 66

               
               
               Conread position:225-464
               
               
               Cow position:chr13:185625-185385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):8, 56

               
               
               Conread position:226-426
               
               
               Cow position:chr13:20137916-20137715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):122, 85

               
               
               Conread position:227-421
               
               
               Cow position:chr13:16187807-16187997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):121, 11

               
               
               Conread position:227-448
               
               
               Cow position:chr13:46329513-46329734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):122, 79

               
               
               Conread position:227-449
               
               
               Cow position:chr13:3211642-3211420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):123, 66

               
               
               Conread position:227-449
               
               
               Cow position:chr13:51901683-51901455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:227-505
               
               
               Cow position:chr13:12324273-12324000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:193
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):65, 5

               
               
               Conread position:227-508
               
               
               Cow position:chr13:13446068-13446342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:201
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):16, 65

               
               
               Conread position:230-390
               
               
               Cow position:chr13:10040447-10040608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:116
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):85, 159

               
               
               Conread position:236-447
               
               
               Cow position:chr13:827324-827118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:154
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):112, 63

               
               
               Conread position:240-449
               
               
               Cow position:chr13:17822873-17823079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):5, 16

               
               
               Conread position:242-418
               
               
               Cow position:chr13:54695840-54696011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:126
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):103, 60

               
               
               Conread position:242-466
               
               
               Cow position:chr13:54471087-54470871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:157
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):103, 60

               
               
               Conread position:242-508
               
               
               Cow position:chr13:7149304-7149032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:188
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):106, 36

               
               
               Conread position:243-508
               
               
               Cow position:chr13:7149438-7149704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:187
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):152, 56

               
               
               Conread position:243-508
               
               
               Cow position:chr13:26522873-26523124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):159, 63

               
               
               Conread position:245-449
               
               
               Cow position:chr13:62008185-62007978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:160
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:245-456
               
               
               Cow position:chr13:17563809-17563604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):103, 49

               
               
               Conread position:249-483
               
               
               Cow position:chr13:53788035-53788271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:175
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):33, 54

               
               
               Conread position:250-434
               
               
               Cow position:chr13:29123373-29123190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):98, 57

               
               
               Conread position:250-462
               
               
               Cow position:chr13:55162279-55162069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:147
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):98, 49

               
               
               Conread position:250-469
               
               
               Cow position:chr13:42672354-42672571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):98, 41

               
               
               Conread position:251-508
               
               
               Cow position:chr13:56763939-56764182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:182
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):24, 70

               
               
               Conread position:252-508
               
               
               Cow position:chr13:84648-84386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:177
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):95, 233

               
               
               Conread position:253-449
               
               
               Cow position:chr13:48554438-48554237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:137
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:255-421
               
               
               Cow position:chr13:29773496-29773662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):94, 51

               
               
               Conread position:255-507
               
               
               Cow position:chr13:7356673-7356445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:180
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):92, 46

               
               
               Conread position:257-506
               
               
               Cow position:chr13:15090847-15091093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):61, 49

               
               
               Conread position:258-448
               
               
               Cow position:chr13:25428168-25428351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):138, 38

               
               
               Conread position:258-508
               
               
               Cow position:chr13:6887936-6887694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):11, 49

               
               
               Conread position:259-447
               
               
               Cow position:chr13:17838008-17837823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:143
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):89, 43

               
               
               Conread position:259-507
               
               
               Cow position:chr13:34665188-34664944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):132, 44

               
               
               Conread position:260-426
               
               
               Cow position:chr13:19183924-19183762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):88, 32

               
               
               Conread position:263-449
               
               
               Cow position:chr13:17350408-17350226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):85, 39

               
               
               Conread position:264-452
               
               
               Cow position:chr13:7191033-7190833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):61, 159

               
               
               Conread position:265-508
               
               
               Cow position:chr13:30271377-30271136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):28, 104

               
               
               Conread position:266-450
               
               
               Cow position:chr13:37946898-37947080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):41, 96

               
               
               Conread position:266-508
               
               
               Cow position:chr13:16020904-16020654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):79, 33

               
               
               Conread position:271-448
               
               
               Cow position:chr13:9117524-9117693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):77, 9

               
               
               Conread position:271-449
               
               
               Cow position:chr13:18340583-18340404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):80, 41

               
               
               Conread position:274-443
               
               
               Cow position:chr13:51856842-51857008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:126
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):74, 28

               
               
               Conread position:279-508
               
               
               Cow position:chr13:38631536-38631768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:163
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):70, 46

               
               
               Conread position:287-482
               
               
               Cow position:chr13:32657411-32657215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:155
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):61, 19

               
               
               Conread position:289-508
               
               
               Cow position:chr13:9161955-9161729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:171
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):16, 12

               
               
               Conread position:290-506
               
               
               Cow position:chr13:17796398-17796182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:150
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):59, 35

               
               
               Conread position:296-448
               
               
               Cow position:chr13:17813496-17813343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):52, 24

               
               
               Conread position:301-502
               
               
               Cow position:chr13:52568982-52569185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:163
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:306-449
               
               
               Cow position:chr13:6183404-6183549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:110
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:307-449
               
               
               Cow position:chr13:42640397-42640257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):90, 37

               
               
               Conread position:307-508
               
               
               Cow position:chr13:7046885-7046675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):41, 23

               
               
               Conread position:308-448
               
               
               Cow position:chr13:13775230-13775371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:106
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):40, 12

               
               
               Conread position:308-508
               
               
               Cow position:chr13:43155843-43156043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):41, 21

               
               
               Conread position:310-508
               
               
               Cow position:chr13:20520073-20519866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:310-508
               
               
               Cow position:chr13:33974745-33974541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):38, 103

               
               
               Conread position:323-508
               
               
               Cow position:chr13:8822861-8822682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:144
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):27, 91

               
               
               Conread position:327-449
               
               
               Cow position:chr13:21295070-21294946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:97
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:330-502
               
               
               Cow position:chr13:38012324-38012140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:346-499
               
               
               Cow position:chr13:18280811-18280965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:117
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):45, 126

               
               
               Conread position:347-507
               
               
               Cow position:chr13:28520453-28520612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:117
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):49, 104

               
               
               Conread position:353-506
               
               
               Cow position:chr13:40885469-40885315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:355-508
               
               
               Cow position:chr13:22227794-22227938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:114
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:355-508
               
               
               Cow position:chr13:58762635-58762788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:110
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:369-505
               
               
               Cow position:chr13:56270285-56270422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:103
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:369-505
               
               
               Cow position:chr13:56281187-56281050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:104
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:379-508
               
               
               Cow position:chr13:23047867-23047997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:102
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:1-435
               
               
               Cow position:chr14:41471594-41472028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):108, 171

               
               
               Conread position:11-450
               
               
               Cow position:chr14:41749398-41749832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):105, 159

               
               
               Conread position:15-387
               
               
               Cow position:chr14:33538567-33538945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 72

               
               
               Conread position:15-408
               
               
               Cow position:chr14:47609242-47609613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:278
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):159, 6

               
               
               Conread position:15-448
               
               
               Cow position:chr14:20016346-20016778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 28

               
               
               Conread position:15-451
               
               
               Cow position:chr14:45605451-45605024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):97, 206

               
               
               Conread position:15-506
               
               
               Cow position:chr14:38169038-38168557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:338
               
               
               Alignm E-value:8.96831e-44
               
               
               Alignm gaps (pig, cow):96, 45

               
               
               Conread position:15-508
               
               
               Cow position:chr14:36554794-36555279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:504
               
               
               Alignm identity:366
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 42

               
               
               Conread position:15-508
               
               
               Cow position:chr14:50027567-50027081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:333
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):96, 39

               
               
               Conread position:16-276
               
               
               Cow position:chr14:24894118-24893855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:194
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):95, 44

               
               
               Conread position:16-284
               
               
               Cow position:chr14:34675655-34675929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:173
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:16-290
               
               
               Cow position:chr14:5501791-5502077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:209
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:16-297
               
               
               Cow position:chr14:34395310-34395595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:200
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):55, 93

               
               
               Conread position:16-304
               
               
               Cow position:chr14:12483950-12484230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:201
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):63, 91

               
               
               Conread position:16-309
               
               
               Cow position:chr14:12488329-12488633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:215
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):50, 164

               
               
               Conread position:16-311
               
               
               Cow position:chr14:18913672-18913379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:209
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):100, 63

               
               
               Conread position:16-336
               
               
               Cow position:chr14:46489895-46490216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:226
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):91, 286

               
               
               Conread position:16-338
               
               
               Cow position:chr14:6418957-6419261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:231
               
               
               Alignm E-value:8.96831e-44
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:16-346
               
               
               Cow position:chr14:24992173-24991855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 144

               
               
               Conread position:16-355
               
               
               Cow position:chr14:8754685-8754342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 52

               
               
               Conread position:16-359
               
               
               Cow position:chr14:8964909-8964567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:251
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):38, 51

               
               
               Conread position:16-362
               
               
               Cow position:chr14:31683374-31683026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:226
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):101, 295

               
               
               Conread position:16-367
               
               
               Cow position:chr14:6467139-6467492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:231
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):93, 250

               
               
               Conread position:16-369
               
               
               Cow position:chr14:10912622-10912960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:247
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):93, 54

               
               
               Conread position:16-370
               
               
               Cow position:chr14:49563310-49563653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:241
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):93, 62

               
               
               Conread position:16-373
               
               
               Cow position:chr14:9744152-9743794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:234
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):93, 288

               
               
               Conread position:16-373
               
               
               Cow position:chr14:10349303-10348948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:234
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):46, 38

               
               
               Conread position:16-373
               
               
               Cow position:chr14:45967174-45967534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:230
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):92, 272

               
               
               Conread position:16-376
               
               
               Cow position:chr14:7558078-7558439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 27

               
               
               Conread position:16-377
               
               
               Cow position:chr14:42596738-42596384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:255
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):97, 117

               
               
               Conread position:16-383
               
               
               Cow position:chr14:33828505-33828157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 35

               
               
               Conread position:16-395
               
               
               Cow position:chr14:37103560-37103193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):163, 54

               
               
               Conread position:16-399
               
               
               Cow position:chr14:193706-194080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:244
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):93, 158

               
               
               Conread position:16-404
               
               
               Cow position:chr14:39807101-39807484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:268
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):99, 45

               
               
               Conread position:16-408
               
               
               Cow position:chr14:40269480-40269872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 148

               
               
               Conread position:16-419
               
               
               Cow position:chr14:18448652-18449050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 26

               
               
               Conread position:16-419
               
               
               Cow position:chr14:39821527-39821124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 262

               
               
               Conread position:16-420
               
               
               Cow position:chr14:28988052-28987661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:281
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):98, 148

               
               
               Conread position:16-424
               
               
               Cow position:chr14:16237146-16237559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 78

               
               
               Conread position:16-426
               
               
               Cow position:chr14:28378722-28378310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 45

               
               
               Conread position:16-426
               
               
               Cow position:chr14:35420399-35420813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 44

               
               
               Conread position:16-434
               
               
               Cow position:chr14:25403585-25403992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 19

               
               
               Conread position:16-434
               
               
               Cow position:chr14:27591588-27592013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:290
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):82, 45

               
               
               Conread position:16-434
               
               
               Cow position:chr14:34124815-34125240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:283
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):52, 144

               
               
               Conread position:16-446
               
               
               Cow position:chr14:25779457-25779033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 212

               
               
               Conread position:16-447
               
               
               Cow position:chr14:19618398-19618820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 15

               
               
               Conread position:16-447
               
               
               Cow position:chr14:50363157-50362724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:297
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):135, 92

               
               
               Conread position:16-448
               
               
               Cow position:chr14:48427437-48427003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 209

               
               
               Conread position:16-448
               
               
               Cow position:chr14:48495787-48496215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 94

               
               
               Conread position:16-449
               
               
               Cow position:chr14:12519971-12520374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:291
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):332, 71

               
               
               Conread position:16-449
               
               
               Cow position:chr14:13385734-13385297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 212

               
               
               Conread position:16-449
               
               
               Cow position:chr14:19863087-19863506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 19

               
               
               Conread position:16-449
               
               
               Cow position:chr14:21964477-21964065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 43

               
               
               Conread position:16-449
               
               
               Cow position:chr14:26116424-26115990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:289
               
               
               Alignm E-value:8.96831e-44
               
               
               Alignm gaps (pig, cow):100, 150

               
               
               Conread position:16-449
               
               
               Cow position:chr14:30760569-30760149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:283
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):93, 197

               
               
               Conread position:16-449
               
               
               Cow position:chr14:34199482-34199915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 38

               
               
               Conread position:16-449
               
               
               Cow position:chr14:37883556-37883988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 178

               
               
               Conread position:16-477
               
               
               Cow position:chr14:20712321-20712787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 296

               
               
               Conread position:16-499
               
               
               Cow position:chr14:22381193-22381693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 212

               
               
               Conread position:16-505
               
               
               Cow position:chr14:47974350-47973857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:505
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 163

               
               
               Conread position:16-508
               
               
               Cow position:chr14:6599592-6600101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:513
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 153

               
               
               Conread position:16-508
               
               
               Cow position:chr14:7647677-7648150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:498
               
               
               Alignm identity:355
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 175

               
               
               Conread position:16-508
               
               
               Cow position:chr14:24417245-24416745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 149

               
               
               Conread position:16-508
               
               
               Cow position:chr14:39769862-39770370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:521
               
               
               Alignm identity:359
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 215

               
               
               Conread position:16-508
               
               
               Cow position:chr14:50589047-50589539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:517
               
               
               Alignm identity:349
               
               
               Alignm E-value:8.96831e-44
               
               
               Alignm gaps (pig, cow):283, 56

               
               
               Conread position:17-297
               
               
               Cow position:chr14:29772129-29771848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:194
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):100, 142

               
               
               Conread position:17-314
               
               
               Cow position:chr14:44382840-44383145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:212
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):83, 102

               
               
               Conread position:17-399
               
               
               Cow position:chr14:28796030-28795650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 36

               
               
               Conread position:17-408
               
               
               Cow position:chr14:20467753-20468126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:272
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):145, 92

               
               
               Conread position:17-432
               
               
               Cow position:chr14:9901531-9901129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 44

               
               
               Conread position:17-434
               
               
               Cow position:chr14:39779113-39778695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 208

               
               
               Conread position:17-443
               
               
               Cow position:chr14:19189397-19188977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 51

               
               
               Conread position:17-505
               
               
               Cow position:chr14:21018473-21017988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:496
               
               
               Alignm identity:353
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 210

               
               
               Conread position:17-507
               
               
               Cow position:chr14:18308950-18309448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:364
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 171

               
               
               Conread position:17-508
               
               
               Cow position:chr14:9020382-9019892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:500
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 26

               
               
               Conread position:17-508
               
               
               Cow position:chr14:10907079-10906600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:501
               
               
               Alignm identity:355
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 119

               
               
               Conread position:17-508
               
               
               Cow position:chr14:43046501-43046027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:499
               
               
               Alignm identity:322
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):88, 44

               
               
               Conread position:18-290
               
               
               Cow position:chr14:17013867-17013589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:199
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):92, 131

               
               
               Conread position:18-413
               
               
               Cow position:chr14:41325080-41325483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 63

               
               
               Conread position:18-434
               
               
               Cow position:chr14:42330711-42330296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 10

               
               
               Conread position:18-448
               
               
               Cow position:chr14:38921292-38920881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:291
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):93, 27

               
               
               Conread position:18-508
               
               
               Cow position:chr14:14621827-14622317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:355
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 124

               
               
               Conread position:19-299
               
               
               Cow position:chr14:46965918-46965635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:204
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):53, 205

               
               
               Conread position:20-434
               
               
               Cow position:chr14:39926542-39926151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 52

               
               
               Conread position:21-399
               
               
               Cow position:chr14:20009962-20010332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:259
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):307, 49

               
               
               Conread position:21-448
               
               
               Cow position:chr14:8102132-8101722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 58

               
               
               Conread position:21-448
               
               
               Cow position:chr14:21357919-21357487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 227

               
               
               Conread position:26-436
               
               
               Cow position:chr14:41180365-41180773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 128

               
               
               Conread position:27-303
               
               
               Cow position:chr14:46735667-46735377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:212
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):46, 279

               
               
               Conread position:27-376
               
               
               Cow position:chr14:28565957-28565615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:251
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):82, 30

               
               
               Conread position:27-400
               
               
               Cow position:chr14:7291141-7290778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:257
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):82, 27

               
               
               Conread position:30-449
               
               
               Cow position:chr14:28304441-28304856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:293
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):79, 38

               
               
               Conread position:31-508
               
               
               Cow position:chr14:2189998-2189505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 127

               
               
               Conread position:32-395
               
               
               Cow position:chr14:17238707-17238335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:254
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):71, 14

               
               
               Conread position:32-431
               
               
               Cow position:chr14:40433266-40432872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:236
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):82, 98

               
               
               Conread position:33-497
               
               
               Cow position:chr14:15990541-15990105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:326
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):21, 37

               
               
               Conread position:35-506
               
               
               Cow position:chr14:25385543-25386014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:355
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 11

               
               
               Conread position:38-448
               
               
               Cow position:chr14:44848048-44848440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:277
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):73, 24

               
               
               Conread position:45-446
               
               
               Cow position:chr14:13427148-13426781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:276
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):14, 72

               
               
               Conread position:45-448
               
               
               Cow position:chr14:39618045-39618447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 35

               
               
               Conread position:46-451
               
               
               Cow position:chr14:9308557-9308157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 159

               
               
               Conread position:50-502
               
               
               Cow position:chr14:47027048-47027496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 121

               
               
               Conread position:51-505
               
               
               Cow position:chr14:7582116-7582570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:319
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):48, 15

               
               
               Conread position:52-434
               
               
               Cow position:chr14:6735541-6735920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 110

               
               
               Conread position:54-434
               
               
               Cow position:chr14:24237141-24236767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):168, 56

               
               
               Conread position:54-508
               
               
               Cow position:chr14:37884089-37884530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 26

               
               
               Conread position:55-448
               
               
               Cow position:chr14:10078579-10078197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):294, 53

               
               
               Conread position:56-427
               
               
               Cow position:chr14:22967072-22966706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 134

               
               
               Conread position:57-508
               
               
               Cow position:chr14:109178-109627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:297
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):123, 52

               
               
               Conread position:63-446
               
               
               Cow position:chr14:35018442-35018822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 158

               
               
               Conread position:64-448
               
               
               Cow position:chr14:32452574-32452178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 242

               
               
               Conread position:65-462
               
               
               Cow position:chr14:9837589-9837978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):128, 39

               
               
               Conread position:65-508
               
               
               Cow position:chr14:33247126-33247569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 106

               
               
               Conread position:66-397
               
               
               Cow position:chr14:27305467-27305125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:234
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):51, 238

               
               
               Conread position:66-434
               
               
               Cow position:chr14:16834641-16834265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 108

               
               
               Conread position:66-504
               
               
               Cow position:chr14:23712997-23712550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 155

               
               
               Conread position:66-508
               
               
               Cow position:chr14:11614910-11615352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 28

               
               
               Conread position:66-508
               
               
               Cow position:chr14:37334002-37333570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 157

               
               
               Conread position:66-508
               
               
               Cow position:chr14:38355494-38355059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 77

               
               
               Conread position:67-338
               
               
               Cow position:chr14:24797271-24797537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:199
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):261, 17

               
               
               Conread position:67-415
               
               
               Cow position:chr14:3564583-3564246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:250
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):35, 59

               
               
               Conread position:67-447
               
               
               Cow position:chr14:14317176-14316817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:267
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):37, 79

               
               
               Conread position:67-452
               
               
               Cow position:chr14:48412567-48412957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 159

               
               
               Conread position:67-502
               
               
               Cow position:chr14:27104404-27103960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:303
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):40, 173

               
               
               Conread position:68-455
               
               
               Cow position:chr14:38143805-38144185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 153

               
               
               Conread position:70-295
               
               
               Cow position:chr14:15518072-15518301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:166
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):29, 21

               
               
               Conread position:70-403
               
               
               Cow position:chr14:47591614-47591939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 27

               
               
               Conread position:70-404
               
               
               Cow position:chr14:33714381-33714705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:240
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):39, 96

               
               
               Conread position:70-427
               
               
               Cow position:chr14:38379327-38378966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:256
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):41, 119

               
               
               Conread position:70-432
               
               
               Cow position:chr14:12856903-12856545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 154

               
               
               Conread position:70-434
               
               
               Cow position:chr14:45677530-45677173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:261
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):39, 73

               
               
               Conread position:70-447
               
               
               Cow position:chr14:44258221-44257853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:254
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):41, 68

               
               
               Conread position:70-448
               
               
               Cow position:chr14:19593833-19594208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 118

               
               
               Conread position:70-449
               
               
               Cow position:chr14:39433957-39434329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:253
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):41, 17

               
               
               Conread position:70-449
               
               
               Cow position:chr14:45052745-45052371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:255
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):42, 120

               
               
               Conread position:70-450
               
               
               Cow position:chr14:18657293-18657680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:257
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):37, 78

               
               
               Conread position:71-310
               
               
               Cow position:chr14:38406619-38406846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):39, 80

               
               
               Conread position:71-346
               
               
               Cow position:chr14:14280723-14280444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:198
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):40, 65

               
               
               Conread position:71-399
               
               
               Cow position:chr14:19850726-19851048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:231
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):40, 99

               
               
               Conread position:71-402
               
               
               Cow position:chr14:25231343-25231675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 119

               
               
               Conread position:71-426
               
               
               Cow position:chr14:41128196-41127854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):116, 39

               
               
               Conread position:71-483
               
               
               Cow position:chr14:23107632-23107217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 53

               
               
               Conread position:71-506
               
               
               Cow position:chr14:44860935-44861360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 132

               
               
               Conread position:71-508
               
               
               Cow position:chr14:20796094-20795647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:303
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):122, 33

               
               
               Conread position:71-508
               
               
               Cow position:chr14:26108946-26108503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 146

               
               
               Conread position:71-508
               
               
               Cow position:chr14:43032110-43031666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 65

               
               
               Conread position:73-387
               
               
               Cow position:chr14:46751977-46751663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:217
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):116, 32

               
               
               Conread position:73-446
               
               
               Cow position:chr14:26097384-26097762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:260
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):34, 44

               
               
               Conread position:73-473
               
               
               Cow position:chr14:30662291-30661901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:285
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):36, 119

               
               
               Conread position:74-315
               
               
               Cow position:chr14:35711877-35712118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:188
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):31, 77

               
               
               Conread position:74-439
               
               
               Cow position:chr14:15913251-15913602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:250
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):322, 29

               
               
               Conread position:74-507
               
               
               Cow position:chr14:33773750-33774172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):100, 152

               
               
               Conread position:75-301
               
               
               Cow position:chr14:19624392-19624159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:171
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:77-289
               
               
               Cow position:chr14:11810270-11810485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):32, 69

               
               
               Conread position:77-362
               
               
               Cow position:chr14:7482355-7482072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:211
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):37, 82

               
               
               Conread position:77-448
               
               
               Cow position:chr14:4991291-4990932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 69

               
               
               Conread position:77-448
               
               
               Cow position:chr14:31785273-31784898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:264
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):99, 36

               
               
               Conread position:77-508
               
               
               Cow position:chr14:5630463-5630019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 147

               
               
               Conread position:77-508
               
               
               Cow position:chr14:8540916-8541356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:305
               
               
               Alignm E-value:8.96831e-44
               
               
               Alignm gaps (pig, cow):32, 86

               
               
               Conread position:79-300
               
               
               Cow position:chr14:12613805-12614019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):28, 73

               
               
               Conread position:79-359
               
               
               Cow position:chr14:11819826-11820101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):35, 142

               
               
               Conread position:79-399
               
               
               Cow position:chr14:16915629-16915309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:208
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):37, 90

               
               
               Conread position:79-448
               
               
               Cow position:chr14:48740588-48740938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:263
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):35, 57

               
               
               Conread position:80-507
               
               
               Cow position:chr14:12559188-12559606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 127

               
               
               Conread position:81-508
               
               
               Cow position:chr14:13810233-13809805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 93

               
               
               Conread position:82-451
               
               
               Cow position:chr14:14466185-14466530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:257
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):29, 137

               
               
               Conread position:82-507
               
               
               Cow position:chr14:10858726-10858292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 190

               
               
               Conread position:86-343
               
               
               Cow position:chr14:23464524-23464780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):23, 56

               
               
               Conread position:87-451
               
               
               Cow position:chr14:24981745-24981385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 73

               
               
               Conread position:89-502
               
               
               Cow position:chr14:47550986-47551398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:278
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):25, 159

               
               
               Conread position:91-448
               
               
               Cow position:chr14:47672597-47672952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 53

               
               
               Conread position:92-336
               
               
               Cow position:chr14:34163590-34163832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:173
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):24, 130

               
               
               Conread position:94-397
               
               
               Cow position:chr14:6190655-6190949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:211
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):15, 143

               
               
               Conread position:95-505
               
               
               Cow position:chr14:8786271-8786683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 13

               
               
               Conread position:96-305
               
               
               Cow position:chr14:24786213-24786011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):15, 91

               
               
               Conread position:96-346
               
               
               Cow position:chr14:37435017-37435270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:173
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):53, 22

               
               
               Conread position:96-397
               
               
               Cow position:chr14:48446879-48447182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:201
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):16, 206

               
               
               Conread position:96-432
               
               
               Cow position:chr14:6541441-6541780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:232
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):15, 212

               
               
               Conread position:96-505
               
               
               Cow position:chr14:37678717-37679130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 153

               
               
               Conread position:96-508
               
               
               Cow position:chr14:34355421-34355829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:290
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):15, 50

               
               
               Conread position:97-475
               
               
               Cow position:chr14:19129791-19129410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 95

               
               
               Conread position:98-440
               
               
               Cow position:chr14:25378217-25378558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 11

               
               
               Conread position:98-447
               
               
               Cow position:chr14:10609968-10609610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:246
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):11, 90

               
               
               Conread position:98-508
               
               
               Cow position:chr14:21691002-21691406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 69

               
               
               Conread position:99-397
               
               
               Cow position:chr14:3868152-3868447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):10, 80

               
               
               Conread position:99-419
               
               
               Cow position:chr14:24796145-24796475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:230
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):10, 127

               
               
               Conread position:107-464
               
               
               Cow position:chr14:20435665-20435305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:244
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):38, 30

               
               
               Conread position:110-434
               
               
               Cow position:chr14:50055666-50055342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):61, 202

               
               
               Conread position:113-447
               
               
               Cow position:chr14:33309248-33309573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 5

               
               
               Conread position:113-449
               
               
               Cow position:chr14:13846248-13845914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:230
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):158, 106

               
               
               Conread position:116-451
               
               
               Cow position:chr14:28114924-28115260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 106

               
               
               Conread position:117-443
               
               
               Cow position:chr14:40165679-40165359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:231
               
               
               Alignm E-value:8.96831e-44
               
               
               Alignm gaps (pig, cow):70, 40

               
               
               Conread position:117-447
               
               
               Cow position:chr14:34984122-34983797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:238
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):53, 82

               
               
               Conread position:117-449
               
               
               Cow position:chr14:24387709-24387369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:243
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):63, 106

               
               
               Conread position:118-422
               
               
               Cow position:chr14:33338223-33338518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:207
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):14, 102

               
               
               Conread position:118-434
               
               
               Cow position:chr14:28004237-28003912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:222
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):56, 166

               
               
               Conread position:123-508
               
               
               Cow position:chr14:10721483-10721851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:249
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):216, 44

               
               
               Conread position:124-443
               
               
               Cow position:chr14:1977828-1978139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:229
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):50, 71

               
               
               Conread position:125-310
               
               
               Cow position:chr14:31479104-31479284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):96, 118

               
               
               Conread position:125-449
               
               
               Cow position:chr14:16033257-16032940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:228
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):66, 26

               
               
               Conread position:125-508
               
               
               Cow position:chr14:39037479-39037090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):112, 47

               
               
               Conread position:132-369
               
               
               Cow position:chr14:33643548-33643771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:177
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):99, 54

               
               
               Conread position:132-508
               
               
               Cow position:chr14:14182585-14182202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 59

               
               
               Conread position:133-400
               
               
               Cow position:chr14:15313794-15313539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:178
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):195, 28

               
               
               Conread position:135-302
               
               
               Cow position:chr14:22952758-22952921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:124
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:141-408
               
               
               Cow position:chr14:25002270-25002004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:200
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):46, 82

               
               
               Conread position:146-457
               
               
               Cow position:chr14:13042985-13042678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:213
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):47, 15

               
               
               Conread position:147-507
               
               
               Cow position:chr14:28803513-28803867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:237
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):27, 151

               
               
               Conread position:149-497
               
               
               Cow position:chr14:43865706-43866045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:229
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):191, 71

               
               
               Conread position:150-507
               
               
               Cow position:chr14:29592499-29592864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:234
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):153, 189

               
               
               Conread position:156-505
               
               
               Cow position:chr14:2974877-2975232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:249
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):62, 101

               
               
               Conread position:157-383
               
               
               Cow position:chr14:6208128-6208351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:159
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):143, 68

               
               
               Conread position:158-451
               
               
               Cow position:chr14:26490527-26490818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):178, 48

               
               
               Conread position:159-449
               
               
               Cow position:chr14:38747878-38747606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):190, 31

               
               
               Conread position:159-451
               
               
               Cow position:chr14:19394575-19394290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:198
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):185, 132

               
               
               Conread position:160-397
               
               
               Cow position:chr14:27338558-27338322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):68, 130

               
               
               Conread position:160-449
               
               
               Cow position:chr14:33830511-33830230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:211
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):185, 136

               
               
               Conread position:161-321
               
               
               Cow position:chr14:41654186-41654345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:116
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:161-365
               
               
               Cow position:chr14:14581079-14580882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:150
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):187, 86

               
               
               Conread position:161-389
               
               
               Cow position:chr14:26628047-26627820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:164
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):58, 82

               
               
               Conread position:161-393
               
               
               Cow position:chr14:26190886-26191119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):60, 82

               
               
               Conread position:161-397
               
               
               Cow position:chr14:8945867-8946103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:162
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):18, 165

               
               
               Conread position:161-449
               
               
               Cow position:chr14:40283832-40283546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:196
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):69, 19

               
               
               Conread position:162-367
               
               
               Cow position:chr14:35819398-35819602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):12, 70

               
               
               Conread position:170-434
               
               
               Cow position:chr14:5573146-5572885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:191
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):52, 32

               
               
               Conread position:172-508
               
               
               Cow position:chr14:15997565-15997900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:234
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):177, 60

               
               
               Conread position:174-451
               
               
               Cow position:chr14:27275368-27275089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:203
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):44, 14

               
               
               Conread position:174-505
               
               
               Cow position:chr14:36289600-36289937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:237
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):174, 88

               
               
               Conread position:175-469
               
               
               Cow position:chr14:44594935-44595215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:204
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):172, 45

               
               
               Conread position:177-508
               
               
               Cow position:chr14:4877034-4877376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):171, 125

               
               
               Conread position:190-451
               
               
               Cow position:chr14:21933157-21933417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:190
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):155, 29

               
               
               Conread position:191-449
               
               
               Cow position:chr14:45045789-45045527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:187
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):34, 107

               
               
               Conread position:191-451
               
               
               Cow position:chr14:33456857-33457118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:175
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):157, 100

               
               
               Conread position:192-357
               
               
               Cow position:chr14:19513237-19513391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:124
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:192-451
               
               
               Cow position:chr14:1868201-1868457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:185
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):33, 19

               
               
               Conread position:192-508
               
               
               Cow position:chr14:23080583-23080903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:215
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):153, 7

               
               
               Conread position:192-508
               
               
               Cow position:chr14:44084297-44084625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):104, 17

               
               
               Conread position:192-508
               
               
               Cow position:chr14:46654363-46654663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:226
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):206, 28

               
               
               Conread position:193-449
               
               
               Cow position:chr14:4202912-4203170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:190
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 0

               
               
               Conread position:196-427
               
               
               Cow position:chr14:12035586-12035360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):152, 103

               
               
               Conread position:196-452
               
               
               Cow position:chr14:27077163-27076902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):100, 24

               
               
               Conread position:198-449
               
               
               Cow position:chr14:33341934-33341688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):22, 107

               
               
               Conread position:199-508
               
               
               Cow position:chr14:12511726-12512040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:235
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):149, 60

               
               
               Conread position:200-372
               
               
               Cow position:chr14:22472838-22473007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):145, 9

               
               
               Conread position:200-504
               
               
               Cow position:chr14:25639604-25639897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:222
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):51, 69

               
               
               Conread position:203-504
               
               
               Cow position:chr14:46998217-46997907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:214
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):93, 78

               
               
               Conread position:209-449
               
               
               Cow position:chr14:35503528-35503288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:174
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):127, 10

               
               
               Conread position:213-408
               
               
               Cow position:chr14:26222906-26222705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:142
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):115, 108

               
               
               Conread position:213-505
               
               
               Cow position:chr14:45718105-45718381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:198
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):135, 12

               
               
               Conread position:213-508
               
               
               Cow position:chr14:1868636-1868937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:224
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):17, 9

               
               
               Conread position:214-449
               
               
               Cow position:chr14:22941561-22941800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:215-432
               
               
               Cow position:chr14:41302671-41302885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):15, 21

               
               
               Conread position:215-506
               
               
               Cow position:chr14:40754085-40754391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:223
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):67, 10

               
               
               Conread position:215-508
               
               
               Cow position:chr14:45849059-45849347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):28, 81

               
               
               Conread position:219-449
               
               
               Cow position:chr14:42419119-42419345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:159
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):129, 23

               
               
               Conread position:220-508
               
               
               Cow position:chr14:12954227-12954524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:210
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):5, 37

               
               
               Conread position:221-448
               
               
               Cow position:chr14:11056586-11056801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):130, 73

               
               
               Conread position:221-508
               
               
               Cow position:chr14:41252835-41253128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:218
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):89, 76

               
               
               Conread position:224-449
               
               
               Cow position:chr14:7036204-7036429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):124, 72

               
               
               Conread position:224-449
               
               
               Cow position:chr14:18763294-18763505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:162
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):124, 23

               
               
               Conread position:224-468
               
               
               Cow position:chr14:29698207-29698453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:177
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):121, 47

               
               
               Conread position:224-508
               
               
               Cow position:chr14:37422637-37422922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:206
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):125, 78

               
               
               Conread position:226-448
               
               
               Cow position:chr14:12634738-12634952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:156
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):122, 68

               
               
               Conread position:227-449
               
               
               Cow position:chr14:42437173-42436953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:164
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):170, 79

               
               
               Conread position:227-463
               
               
               Cow position:chr14:19951717-19951479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:168
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):118, 80

               
               
               Conread position:229-391
               
               
               Cow position:chr14:37866129-37866286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):120, 27

               
               
               Conread position:234-451
               
               
               Cow position:chr14:15039469-15039687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:155
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):29, 87

               
               
               Conread position:237-448
               
               
               Cow position:chr14:1708519-1708727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):111, 44

               
               
               Conread position:245-503
               
               
               Cow position:chr14:39058709-39058453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):14, 27

               
               
               Conread position:249-414
               
               
               Cow position:chr14:33553310-33553148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:125
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):34, 22

               
               
               Conread position:249-449
               
               
               Cow position:chr14:15504028-15504228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:137
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):99, 53

               
               
               Conread position:250-434
               
               
               Cow position:chr14:49767588-49767406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):101, 9

               
               
               Conread position:250-449
               
               
               Cow position:chr14:4282383-4282578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):98, 52

               
               
               Conread position:250-491
               
               
               Cow position:chr14:2038690-2038925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:169
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:250-497
               
               
               Cow position:chr14:20045677-20045432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:176
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):91, 51

               
               
               Conread position:250-499
               
               
               Cow position:chr14:12127287-12127537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):98, 44

               
               
               Conread position:253-449
               
               
               Cow position:chr14:1796312-1796121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:147
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):149, 49

               
               
               Conread position:255-412
               
               
               Cow position:chr14:46062066-46061907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:117
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):48, 5

               
               
               Conread position:257-448
               
               
               Cow position:chr14:48900290-48900105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):91, 21

               
               
               Conread position:258-449
               
               
               Cow position:chr14:29965134-29964948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):90, 29

               
               
               Conread position:258-508
               
               
               Cow position:chr14:16352462-16352209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:187
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):90, 44

               
               
               Conread position:259-505
               
               
               Cow position:chr14:20429696-20429447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):59, 12

               
               
               Conread position:259-508
               
               
               Cow position:chr14:40209016-40208759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:179
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):90, 54

               
               
               Conread position:265-443
               
               
               Cow position:chr14:803797-803620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):84, 33

               
               
               Conread position:265-480
               
               
               Cow position:chr14:48744623-48744415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:151
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):137, 26

               
               
               Conread position:266-449
               
               
               Cow position:chr14:16341102-16340925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):131, 39

               
               
               Conread position:270-504
               
               
               Cow position:chr14:41837767-41838004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):81, 30

               
               
               Conread position:271-508
               
               
               Cow position:chr14:25399177-25398949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:180
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):31, 44

               
               
               Conread position:272-451
               
               
               Cow position:chr14:37902103-37901921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):5, 112

               
               
               Conread position:274-449
               
               
               Cow position:chr14:3943452-3943622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):71, 22

               
               
               Conread position:274-472
               
               
               Cow position:chr14:21084444-21084246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):73, 27

               
               
               Conread position:281-435
               
               
               Cow position:chr14:7326445-7326601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:120
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):67, 26

               
               
               Conread position:289-506
               
               
               Cow position:chr14:28605323-28605104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:158
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):11, 36

               
               
               Conread position:296-425
               
               
               Cow position:chr14:20050945-20051075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:107
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):53, 10

               
               
               Conread position:301-508
               
               
               Cow position:chr14:4271296-4271510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:153
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):5, 102

               
               
               Conread position:309-434
               
               
               Cow position:chr14:16749615-16749742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:100
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:309-508
               
               
               Cow position:chr14:23050552-23050742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:151
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):40, 13

               
               
               Conread position:313-508
               
               
               Cow position:chr14:19022834-19023027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):36, 10

               
               
               Conread position:316-508
               
               
               Cow position:chr14:37934177-37933982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):88, 32

               
               
               Conread position:317-508
               
               
               Cow position:chr14:47519692-47519882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):32, 11

               
               
               Conread position:326-508
               
               
               Cow position:chr14:41531612-41531793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):23, 101

               
               
               Conread position:327-508
               
               
               Cow position:chr14:48213132-48212953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):22, 70

               
               
               Conread position:329-506
               
               
               Cow position:chr14:16207448-16207636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:336-508
               
               
               Cow position:chr14:46114111-46114288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:130
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):35, 29

               
               
               Conread position:346-495
               
               
               Cow position:chr14:3173705-3173862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:346-508
               
               
               Cow position:chr14:36080887-36081045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:118
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):20, 27

               
               
               Conread position:347-508
               
               
               Cow position:chr14:26805020-26805182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:347-508
               
               
               Cow position:chr14:48399539-48399374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:126
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:356-508
               
               
               Cow position:chr14:47600388-47600536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:112
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:357-481
               
               
               Cow position:chr14:5400606-5400481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:100
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):40, 69

               
               
               Conread position:359-505
               
               
               Cow position:chr14:24799689-24799835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:113
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):40, 16

               
               
               Conread position:10-269
               
               
               Cow position:chr15:6385772-6385511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:182
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):107, 79

               
               
               Conread position:11-452
               
               
               Cow position:chr15:41418399-41418857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:313
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):63, 192

               
               
               Conread position:11-506
               
               
               Cow position:chr15:24968199-24967701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:513
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):209, 98

               
               
               Conread position:11-506
               
               
               Cow position:chr15:27247920-27247424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 34

               
               
               Conread position:12-294
               
               
               Cow position:chr15:9267652-9267929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 178

               
               
               Conread position:12-320
               
               
               Cow position:chr15:33681068-33680754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:228
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):65, 219

               
               
               Conread position:12-347
               
               
               Cow position:chr15:23775550-23775860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):97, 127

               
               
               Conread position:15-309
               
               
               Cow position:chr15:53118742-53118434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:210
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):50, 221

               
               
               Conread position:15-405
               
               
               Cow position:chr15:35838678-35839076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:278
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):60, 147

               
               
               Conread position:16-284
               
               
               Cow position:chr15:34064506-34064780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:16-294
               
               
               Cow position:chr15:22168470-22168185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:206
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:16-300
               
               
               Cow position:chr15:53680364-53680642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:195
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):93, 11

               
               
               Conread position:16-309
               
               
               Cow position:chr15:47990355-47990653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:210
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):101, 189

               
               
               Conread position:16-311
               
               
               Cow position:chr15:29272602-29272301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:208
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):20, 212

               
               
               Conread position:16-319
               
               
               Cow position:chr15:13545503-13545210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:214
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):86, 66

               
               
               Conread position:16-342
               
               
               Cow position:chr15:14322640-14322975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:243
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):57, 224

               
               
               Conread position:16-343
               
               
               Cow position:chr15:7749739-7750054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:231
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):222, 94

               
               
               Conread position:16-365
               
               
               Cow position:chr15:33376401-33376752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:223
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):101, 276

               
               
               Conread position:16-372
               
               
               Cow position:chr15:9871008-9871364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 44

               
               
               Conread position:16-372
               
               
               Cow position:chr15:34104673-34104310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 158

               
               
               Conread position:16-373
               
               
               Cow position:chr15:31767684-31767325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:228
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):101, 275

               
               
               Conread position:16-377
               
               
               Cow position:chr15:19119210-19119563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:251
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):89, 94

               
               
               Conread position:16-390
               
               
               Cow position:chr15:43030615-43030993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:262
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):95, 117

               
               
               Conread position:16-395
               
               
               Cow position:chr15:24044685-24045070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 212

               
               
               Conread position:16-397
               
               
               Cow position:chr15:20472139-20472520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 119

               
               
               Conread position:16-397
               
               
               Cow position:chr15:27281269-27280899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 75

               
               
               Conread position:16-399
               
               
               Cow position:chr15:24616970-24616597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:264
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):100, 71

               
               
               Conread position:16-399
               
               
               Cow position:chr15:47279751-47280113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:262
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):332, 70

               
               
               Conread position:16-408
               
               
               Cow position:chr15:21832017-21832420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:16-411
               
               
               Cow position:chr15:24797394-24797797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:276
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):53, 145

               
               
               Conread position:16-411
               
               
               Cow position:chr15:27892390-27892020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:267
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):357, 71

               
               
               Conread position:16-422
               
               
               Cow position:chr15:16640190-16639779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 209

               
               
               Conread position:16-423
               
               
               Cow position:chr15:16585926-16585513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:286
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):44, 72

               
               
               Conread position:16-425
               
               
               Cow position:chr15:32979627-32980034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 281

               
               
               Conread position:16-427
               
               
               Cow position:chr15:13387488-13387074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 69

               
               
               Conread position:16-429
               
               
               Cow position:chr15:6970385-6969982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 30

               
               
               Conread position:16-434
               
               
               Cow position:chr15:608563-608137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 46

               
               
               Conread position:16-434
               
               
               Cow position:chr15:20352246-20351822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 216

               
               
               Conread position:16-434
               
               
               Cow position:chr15:44641304-44640886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 141

               
               
               Conread position:16-439
               
               
               Cow position:chr15:1082980-1083391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:291
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):154, 38

               
               
               Conread position:16-443
               
               
               Cow position:chr15:52482422-52482846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 95

               
               
               Conread position:16-443
               
               
               Cow position:chr15:53164426-53164003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):155, 94

               
               
               Conread position:16-448
               
               
               Cow position:chr15:1329699-1330127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 47

               
               
               Conread position:16-448
               
               
               Cow position:chr15:4373882-4373464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 210

               
               
               Conread position:16-448
               
               
               Cow position:chr15:16604226-16603801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 49

               
               
               Conread position:16-448
               
               
               Cow position:chr15:17233591-17233169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:283
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):71, 29

               
               
               Conread position:16-448
               
               
               Cow position:chr15:33976286-33976719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 158

               
               
               Conread position:16-448
               
               
               Cow position:chr15:43626865-43626445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 50

               
               
               Conread position:16-449
               
               
               Cow position:chr15:143827-144273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 45

               
               
               Conread position:16-449
               
               
               Cow position:chr15:16583305-16583715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 172

               
               
               Conread position:16-449
               
               
               Cow position:chr15:17084616-17084184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:290
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):93, 26

               
               
               Conread position:16-449
               
               
               Cow position:chr15:20458893-20459333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 289

               
               
               Conread position:16-449
               
               
               Cow position:chr15:20486806-20487228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 162

               
               
               Conread position:16-449
               
               
               Cow position:chr15:20534043-20534475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 64

               
               
               Conread position:16-449
               
               
               Cow position:chr15:26896314-26896719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:306
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):95, 47

               
               
               Conread position:16-449
               
               
               Cow position:chr15:28924362-28924780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 93

               
               
               Conread position:16-449
               
               
               Cow position:chr15:36435612-36435180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 8

               
               
               Conread position:16-450
               
               
               Cow position:chr15:33306513-33306084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 51

               
               
               Conread position:16-450
               
               
               Cow position:chr15:51632638-51633084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:322
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):85, 152

               
               
               Conread position:16-451
               
               
               Cow position:chr15:17196552-17196122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:296
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):93, 268

               
               
               Conread position:16-464
               
               
               Cow position:chr15:46868302-46868754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:299
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):43, 105

               
               
               Conread position:16-473
               
               
               Cow position:chr15:26421195-26421647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 19

               
               
               Conread position:16-487
               
               
               Cow position:chr15:7962495-7962019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:488
               
               
               Alignm identity:352
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 211

               
               
               Conread position:16-487
               
               
               Cow position:chr15:9493891-9494354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 59

               
               
               Conread position:16-505
               
               
               Cow position:chr15:23798115-23798621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:515
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 45

               
               
               Conread position:16-505
               
               
               Cow position:chr15:27862923-27863407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:497
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):143, 27

               
               
               Conread position:16-506
               
               
               Cow position:chr15:15881328-15880847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:500
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):158, 11

               
               
               Conread position:16-506
               
               
               Cow position:chr15:24976784-24977255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:498
               
               
               Alignm identity:355
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):99, 209

               
               
               Conread position:16-507
               
               
               Cow position:chr15:20422357-20422866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:521
               
               
               Alignm identity:356
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):135, 95

               
               
               Conread position:16-508
               
               
               Cow position:chr15:794611-795119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:517
               
               
               Alignm identity:377
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 45

               
               
               Conread position:16-508
               
               
               Cow position:chr15:9648328-9648791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:338
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):95, 38

               
               
               Conread position:16-508
               
               
               Cow position:chr15:13285450-13284933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:531
               
               
               Alignm identity:355
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):34, 164

               
               
               Conread position:16-508
               
               
               Cow position:chr15:33625371-33624869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:516
               
               
               Alignm identity:374
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:16-508
               
               
               Cow position:chr15:35041470-35041958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:327
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):93, 32

               
               
               Conread position:16-508
               
               
               Cow position:chr15:46563070-46563579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:525
               
               
               Alignm identity:358
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 214

               
               
               Conread position:16-508
               
               
               Cow position:chr15:50177503-50177025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:501
               
               
               Alignm identity:361
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 67

               
               
               Conread position:17-275
               
               
               Cow position:chr15:37470596-37470352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:17-354
               
               
               Cow position:chr15:13683882-13684197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:242
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):92, 33

               
               
               Conread position:17-361
               
               
               Cow position:chr15:25110761-25111108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 56

               
               
               Conread position:17-382
               
               
               Cow position:chr15:6331655-6331994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:251
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):92, 47

               
               
               Conread position:17-387
               
               
               Cow position:chr15:30820417-30820799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:259
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):44, 148

               
               
               Conread position:17-399
               
               
               Cow position:chr15:6152071-6151687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:246
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):98, 275

               
               
               Conread position:17-413
               
               
               Cow position:chr15:13515775-13515377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 92

               
               
               Conread position:17-433
               
               
               Cow position:chr15:5728044-5727646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 188

               
               
               Conread position:17-447
               
               
               Cow position:chr15:13554745-13554330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 19

               
               
               Conread position:17-447
               
               
               Cow position:chr15:40999646-41000093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 222

               
               
               Conread position:17-449
               
               
               Cow position:chr15:26911675-26912097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 88

               
               
               Conread position:17-449
               
               
               Cow position:chr15:30047130-30047570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 211

               
               
               Conread position:17-505
               
               
               Cow position:chr15:7191856-7192344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:496
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 205

               
               
               Conread position:17-507
               
               
               Cow position:chr15:6905958-6905438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:524
               
               
               Alignm identity:345
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):46, 303

               
               
               Conread position:18-313
               
               
               Cow position:chr15:51460641-51460334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:203
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):47, 171

               
               
               Conread position:18-419
               
               
               Cow position:chr15:27732802-27732417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 43

               
               
               Conread position:18-422
               
               
               Cow position:chr15:6530433-6530846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 82

               
               
               Conread position:18-449
               
               
               Cow position:chr15:16112807-16112375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 55

               
               
               Conread position:18-449
               
               
               Cow position:chr15:19186213-19186638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 43

               
               
               Conread position:18-449
               
               
               Cow position:chr15:22938931-22939350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 52

               
               
               Conread position:18-505
               
               
               Cow position:chr15:5536154-5535678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:499
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 87

               
               
               Conread position:18-508
               
               
               Cow position:chr15:10570222-10570697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:496
               
               
               Alignm identity:361
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 9

               
               
               Conread position:18-508
               
               
               Cow position:chr15:22531460-22530979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 28

               
               
               Conread position:18-508
               
               
               Cow position:chr15:24285393-24284901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:357
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 211

               
               
               Conread position:19-334
               
               
               Cow position:chr15:27282193-27281892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:234
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):46, 92

               
               
               Conread position:19-373
               
               
               Cow position:chr15:3893146-3893501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:226
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):90, 272

               
               
               Conread position:20-449
               
               
               Cow position:chr15:21388768-21389188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):115, 34

               
               
               Conread position:22-421
               
               
               Cow position:chr15:41360567-41360947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:263
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):68, 48

               
               
               Conread position:22-439
               
               
               Cow position:chr15:42415667-42415240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:279
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):44, 149

               
               
               Conread position:23-306
               
               
               Cow position:chr15:5571236-5571522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):86, 280

               
               
               Conread position:24-447
               
               
               Cow position:chr15:42788764-42789171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):163, 80

               
               
               Conread position:25-364
               
               
               Cow position:chr15:52739726-52740065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:233
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):191, 84

               
               
               Conread position:27-448
               
               
               Cow position:chr15:4138531-4138112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 55

               
               
               Conread position:28-309
               
               
               Cow position:chr15:28126654-28126934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:193
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):81, 160

               
               
               Conread position:31-359
               
               
               Cow position:chr15:16936471-16936782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:238
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):80, 48

               
               
               Conread position:32-455
               
               
               Cow position:chr15:20370079-20370486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):253, 29

               
               
               Conread position:37-299
               
               
               Cow position:chr15:44209954-44209689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):72, 40

               
               
               Conread position:37-336
               
               
               Cow position:chr15:53402616-53402901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:196
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):134, 71

               
               
               Conread position:37-420
               
               
               Cow position:chr15:21421328-21420942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:239
               
               
               Alignm E-value:8.96831e-44
               
               
               Alignm gaps (pig, cow):54, 122

               
               
               Conread position:37-434
               
               
               Cow position:chr15:16307802-16307412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 188

               
               
               Conread position:37-473
               
               
               Cow position:chr15:9177825-9178251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 157

               
               
               Conread position:39-449
               
               
               Cow position:chr15:286864-286453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 50

               
               
               Conread position:41-430
               
               
               Cow position:chr15:18018294-18017923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 83

               
               
               Conread position:46-366
               
               
               Cow position:chr15:36621796-36621469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 149

               
               
               Conread position:46-506
               
               
               Cow position:chr15:12170619-12170162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 67

               
               
               Conread position:47-447
               
               
               Cow position:chr15:47042264-47042654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:279
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):62, 19

               
               
               Conread position:48-384
               
               
               Cow position:chr15:18206135-18206471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:228
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):19, 247

               
               
               Conread position:49-452
               
               
               Cow position:chr15:39599813-39599418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 31

               
               
               Conread position:51-312
               
               
               Cow position:chr15:51831220-51831489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:180
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:52-343
               
               
               Cow position:chr15:11362807-11363093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:215
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):21, 115

               
               
               Conread position:53-359
               
               
               Cow position:chr15:20725247-20725550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:214
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):56, 33

               
               
               Conread position:54-317
               
               
               Cow position:chr15:10615372-10615627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:180
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):53, 117

               
               
               Conread position:57-432
               
               
               Cow position:chr15:36259225-36259612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:255
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):54, 176

               
               
               Conread position:58-369
               
               
               Cow position:chr15:37716558-37716877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:218
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):53, 60

               
               
               Conread position:58-508
               
               
               Cow position:chr15:13846214-13846667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:302
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):51, 20

               
               
               Conread position:59-300
               
               
               Cow position:chr15:7827674-7827916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):33, 114

               
               
               Conread position:60-427
               
               
               Cow position:chr15:6657469-6657096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 63

               
               
               Conread position:61-470
               
               
               Cow position:chr15:38323190-38322789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:287
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):54, 19

               
               
               Conread position:65-238
               
               
               Cow position:chr15:36618538-36618358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:65-277
               
               
               Cow position:chr15:23139804-23140009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):178, 36

               
               
               Conread position:65-319
               
               
               Cow position:chr15:38846454-38846204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):44, 104

               
               
               Conread position:65-421
               
               
               Cow position:chr15:21365842-21366194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:250
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):150, 45

               
               
               Conread position:65-430
               
               
               Cow position:chr15:35417262-35417631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:260
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):14, 40

               
               
               Conread position:65-452
               
               
               Cow position:chr15:34140338-34139953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:270
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):46, 182

               
               
               Conread position:65-473
               
               
               Cow position:chr15:3572346-3572748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 109

               
               
               Conread position:65-508
               
               
               Cow position:chr15:5730295-5729854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 98

               
               
               Conread position:66-369
               
               
               Cow position:chr15:40009293-40009598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:217
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):43, 156

               
               
               Conread position:66-396
               
               
               Cow position:chr15:21908291-21907964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:229
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):22, 16

               
               
               Conread position:66-403
               
               
               Cow position:chr15:16476388-16476718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:237
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):43, 16

               
               
               Conread position:66-427
               
               
               Cow position:chr15:40343607-40343245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 108

               
               
               Conread position:66-449
               
               
               Cow position:chr15:16927727-16928119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:268
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):81, 96

               
               
               Conread position:66-451
               
               
               Cow position:chr15:1298093-1297712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 133

               
               
               Conread position:66-505
               
               
               Cow position:chr15:19279741-19280173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):314, 32

               
               
               Conread position:66-505
               
               
               Cow position:chr15:20482478-20482928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 162

               
               
               Conread position:66-508
               
               
               Cow position:chr15:8230223-8230646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 133

               
               
               Conread position:66-508
               
               
               Cow position:chr15:21894139-21893678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 160

               
               
               Conread position:67-434
               
               
               Cow position:chr15:36781980-36782339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):278, 41

               
               
               Conread position:67-508
               
               
               Cow position:chr15:44252718-44252282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 154

               
               
               Conread position:69-448
               
               
               Cow position:chr15:21941495-21941869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 22

               
               
               Conread position:70-422
               
               
               Cow position:chr15:9928709-9928361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 40

               
               
               Conread position:70-449
               
               
               Cow position:chr15:2952777-2953159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 180

               
               
               Conread position:70-504
               
               
               Cow position:chr15:31616651-31617086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 160

               
               
               Conread position:71-432
               
               
               Cow position:chr15:4535259-4534903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 119

               
               
               Conread position:71-440
               
               
               Cow position:chr15:43248419-43248793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 151

               
               
               Conread position:71-447
               
               
               Cow position:chr15:24994176-24994536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:246
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):36, 20

               
               
               Conread position:71-508
               
               
               Cow position:chr15:14020823-14020395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 71

               
               
               Conread position:71-508
               
               
               Cow position:chr15:17100364-17100806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):277, 97

               
               
               Conread position:71-508
               
               
               Cow position:chr15:28236549-28236968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:289
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):28, 54

               
               
               Conread position:72-439
               
               
               Cow position:chr15:2669254-2668891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 147

               
               
               Conread position:73-426
               
               
               Cow position:chr15:23767915-23768259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 96

               
               
               Conread position:73-508
               
               
               Cow position:chr15:22532011-22531571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 159

               
               
               Conread position:74-451
               
               
               Cow position:chr15:5683483-5683123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:256
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):37, 100

               
               
               Conread position:76-448
               
               
               Cow position:chr15:22553177-22553565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:269
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):33, 164

               
               
               Conread position:76-449
               
               
               Cow position:chr15:38883503-38883124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 238

               
               
               Conread position:77-411
               
               
               Cow position:chr15:11658219-11658558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 148

               
               
               Conread position:77-432
               
               
               Cow position:chr15:35642366-35642008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 221

               
               
               Conread position:77-434
               
               
               Cow position:chr15:50341454-50341111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:250
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):225, 27

               
               
               Conread position:77-475
               
               
               Cow position:chr15:22137029-22136641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 166

               
               
               Conread position:77-497
               
               
               Cow position:chr15:6491243-6491665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 179

               
               
               Conread position:77-499
               
               
               Cow position:chr15:21837035-21836614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 93

               
               
               Conread position:77-503
               
               
               Cow position:chr15:27972869-27973303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 229

               
               
               Conread position:77-506
               
               
               Cow position:chr15:15215366-15214935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 146

               
               
               Conread position:77-508
               
               
               Cow position:chr15:34036844-34037270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:294
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):36, 113

               
               
               Conread position:78-485
               
               
               Cow position:chr15:11957878-11957477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:284
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):89, 33

               
               
               Conread position:78-504
               
               
               Cow position:chr15:2800310-2799901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:299
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):27, 12

               
               
               Conread position:79-425
               
               
               Cow position:chr15:6462158-6462498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 109

               
               
               Conread position:79-425
               
               
               Cow position:chr15:39406078-39405743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:246
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):32, 187

               
               
               Conread position:79-449
               
               
               Cow position:chr15:12723422-12723064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:259
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):290, 30

               
               
               Conread position:81-504
               
               
               Cow position:chr15:39894920-39894518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:287
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):28, 53

               
               
               Conread position:82-434
               
               
               Cow position:chr15:12304980-12304628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:242
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):21, 28

               
               
               Conread position:82-449
               
               
               Cow position:chr15:39621679-39621313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 81

               
               
               Conread position:84-426
               
               
               Cow position:chr15:6627953-6628288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:236
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):159, 56

               
               
               Conread position:84-426
               
               
               Cow position:chr15:10245670-10245996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:231
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):264, 104

               
               
               Conread position:89-449
               
               
               Cow position:chr15:35945876-35945505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:262
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):22, 155

               
               
               Conread position:89-469
               
               
               Cow position:chr15:31857926-31857544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 137

               
               
               Conread position:89-470
               
               
               Cow position:chr15:42194947-42195310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:260
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):154, 62

               
               
               Conread position:89-504
               
               
               Cow position:chr15:31545015-31545428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 141

               
               
               Conread position:89-506
               
               
               Cow position:chr15:30002023-30001596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:291
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):18, 206

               
               
               Conread position:89-508
               
               
               Cow position:chr15:26158284-26158701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:269
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):18, 131

               
               
               Conread position:89-508
               
               
               Cow position:chr15:47822133-47821731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 25

               
               
               Conread position:90-507
               
               
               Cow position:chr15:26573720-26573297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 212

               
               
               Conread position:90-508
               
               
               Cow position:chr15:43776668-43776269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:282
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):261, 18

               
               
               Conread position:91-344
               
               
               Cow position:chr15:21523118-21522868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):60, 17

               
               
               Conread position:91-414
               
               
               Cow position:chr15:41225231-41225553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:235
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):83, 133

               
               
               Conread position:91-449
               
               
               Cow position:chr15:22938445-22938787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:244
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):18, 101

               
               
               Conread position:94-459
               
               
               Cow position:chr15:26673266-26673616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:250
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):20, 114

               
               
               Conread position:94-508
               
               
               Cow position:chr15:225474-225905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 89

               
               
               Conread position:94-508
               
               
               Cow position:chr15:50322924-50322509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 128

               
               
               Conread position:95-301
               
               
               Cow position:chr15:38394748-38394538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:95-347
               
               
               Cow position:chr15:20401587-20401828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):16, 89

               
               
               Conread position:96-343
               
               
               Cow position:chr15:11629555-11629803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:186
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):13, 75

               
               
               Conread position:98-396
               
               
               Cow position:chr15:5632996-5632710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:214
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):9, 72

               
               
               Conread position:98-449
               
               
               Cow position:chr15:49922463-49922109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):128, 213

               
               
               Conread position:98-452
               
               
               Cow position:chr15:45217145-45216811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:245
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):16, 94

               
               
               Conread position:98-505
               
               
               Cow position:chr15:12163200-12163600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:273
               
               
               Alignm E-value:8.96831e-44
               
               
               Alignm gaps (pig, cow):145, 10

               
               
               Conread position:99-497
               
               
               Cow position:chr15:26903519-26903102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 95

               
               
               Conread position:100-448
               
               
               Cow position:chr15:37645294-37644966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 55

               
               
               Conread position:100-503
               
               
               Cow position:chr15:35112565-35112970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:281
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):9, 74

               
               
               Conread position:101-449
               
               
               Cow position:chr15:27900185-27900535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 8

               
               
               Conread position:108-434
               
               
               Cow position:chr15:11995712-11996037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 61

               
               
               Conread position:108-507
               
               
               Cow position:chr15:22886862-22886475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):143, 58

               
               
               Conread position:110-450
               
               
               Cow position:chr15:45585038-45584707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:237
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):22, 118

               
               
               Conread position:115-310
               
               
               Cow position:chr15:10846028-10845830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):114, 0

               
               
               Conread position:116-494
               
               
               Cow position:chr15:31907955-31907580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:258
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):60, 26

               
               
               Conread position:117-449
               
               
               Cow position:chr15:44658664-44658338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:224
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):57, 42

               
               
               Conread position:118-369
               
               
               Cow position:chr15:37777654-37777404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):99, 11

               
               
               Conread position:120-353
               
               
               Cow position:chr15:51583523-51583297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):54, 5

               
               
               Conread position:120-449
               
               
               Cow position:chr15:26918972-26919300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 104

               
               
               Conread position:121-506
               
               
               Cow position:chr15:11646189-11646559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):224, 17

               
               
               Conread position:121-508
               
               
               Cow position:chr15:24411706-24411337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 43

               
               
               Conread position:122-449
               
               
               Cow position:chr15:5071801-5072109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:223
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):280, 127

               
               
               Conread position:124-452
               
               
               Cow position:chr15:1804031-1804366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:237
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):50, 197

               
               
               Conread position:124-508
               
               
               Cow position:chr15:25689275-25688882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:276
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):48, 7

               
               
               Conread position:128-346
               
               
               Cow position:chr15:34144862-34145074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):171, 0

               
               
               Conread position:128-364
               
               
               Cow position:chr15:36671741-36671980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:173
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):46, 98

               
               
               Conread position:128-449
               
               
               Cow position:chr15:2968626-2968312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:214
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):220, 62

               
               
               Conread position:131-508
               
               
               Cow position:chr15:22854699-22854328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:257
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):17, 92

               
               
               Conread position:132-357
               
               
               Cow position:chr15:4350311-4350535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):46, 112

               
               
               Conread position:132-440
               
               
               Cow position:chr15:39373140-39373457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:207
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):42, 170

               
               
               Conread position:132-508
               
               
               Cow position:chr15:9970694-9971062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):217, 44

               
               
               Conread position:133-507
               
               
               Cow position:chr15:16667211-16667599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:259
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):41, 91

               
               
               Conread position:136-397
               
               
               Cow position:chr15:16439540-16439803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):43, 137

               
               
               Conread position:137-449
               
               
               Cow position:chr15:32323922-32324230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:221
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):79, 8

               
               
               Conread position:140-449
               
               
               Cow position:chr15:7535387-7535680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:208
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):36, 49

               
               
               Conread position:145-449
               
               
               Cow position:chr15:22871881-22871589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):203, 16

               
               
               Conread position:146-389
               
               
               Cow position:chr15:38877033-38877268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:174
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):203, 15

               
               
               Conread position:146-440
               
               
               Cow position:chr15:5444253-5443968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):182, 7

               
               
               Conread position:146-478
               
               
               Cow position:chr15:2141025-2141359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:239
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):143, 76

               
               
               Conread position:146-487
               
               
               Cow position:chr15:53045600-53045940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 78

               
               
               Conread position:148-448
               
               
               Cow position:chr15:4296038-4295739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:214
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):19, 78

               
               
               Conread position:148-508
               
               
               Cow position:chr15:49274227-49273860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:267
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):33, 17

               
               
               Conread position:156-451
               
               
               Cow position:chr15:30934286-30934570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:204
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):20, 44

               
               
               Conread position:156-480
               
               
               Cow position:chr15:9001228-9000903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 155

               
               
               Conread position:157-368
               
               
               Cow position:chr15:16657756-16657547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:158
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):65, 7

               
               
               Conread position:157-370
               
               
               Cow position:chr15:17124769-17124986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):85, 64

               
               
               Conread position:157-439
               
               
               Cow position:chr15:44377539-44377259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):176, 132

               
               
               Conread position:157-448
               
               
               Cow position:chr15:23957967-23957689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:210
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):83, 63

               
               
               Conread position:157-449
               
               
               Cow position:chr15:23572415-23572711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:215
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):64, 144

               
               
               Conread position:157-479
               
               
               Cow position:chr15:245038-244727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:218
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):141, 23

               
               
               Conread position:160-448
               
               
               Cow position:chr15:4178673-4178968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 64

               
               
               Conread position:161-449
               
               
               Cow position:chr15:23598052-23598341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:185
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):157, 130

               
               
               Conread position:161-449
               
               
               Cow position:chr15:39316575-39316867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 105

               
               
               Conread position:161-460
               
               
               Cow position:chr15:36838920-36839209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:218
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):162, 59

               
               
               Conread position:162-342
               
               
               Cow position:chr15:31483712-31483534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:131
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):6, 62

               
               
               Conread position:163-449
               
               
               Cow position:chr15:21821667-21821949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:210
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):55, 87

               
               
               Conread position:164-391
               
               
               Cow position:chr15:33770874-33770651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):79, 55

               
               
               Conread position:164-397
               
               
               Cow position:chr15:23115101-23114862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):17, 136

               
               
               Conread position:165-464
               
               
               Cow position:chr15:40117201-40117488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:207
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):137, 75

               
               
               Conread position:166-430
               
               
               Cow position:chr15:12441570-12441827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:181
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):49, 89

               
               
               Conread position:166-449
               
               
               Cow position:chr15:39619409-39619117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:203
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):51, 77

               
               
               Conread position:172-404
               
               
               Cow position:chr15:10737500-10737724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):57, 14

               
               
               Conread position:172-423
               
               
               Cow position:chr15:11559108-11559354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:174
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):176, 23

               
               
               Conread position:172-432
               
               
               Cow position:chr15:38837995-38837742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):225, 107

               
               
               Conread position:172-451
               
               
               Cow position:chr15:5726573-5726298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):176, 139

               
               
               Conread position:172-451
               
               
               Cow position:chr15:10608057-10608331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):176, 41

               
               
               Conread position:172-504
               
               
               Cow position:chr15:25907157-25906820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:241
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):130, 47

               
               
               Conread position:172-508
               
               
               Cow position:chr15:6905310-6905002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:231
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):177, 47

               
               
               Conread position:174-449
               
               
               Cow position:chr15:25386689-25386414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:198
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):51, 111

               
               
               Conread position:174-452
               
               
               Cow position:chr15:53036722-53036993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):174, 35

               
               
               Conread position:176-393
               
               
               Cow position:chr15:16018279-16018068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):152, 55

               
               
               Conread position:176-448
               
               
               Cow position:chr15:18671211-18671478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:198
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):168, 9

               
               
               Conread position:176-449
               
               
               Cow position:chr15:43788488-43788237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):142, 43

               
               
               Conread position:178-508
               
               
               Cow position:chr15:37205287-37204968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:230
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):170, 42

               
               
               Conread position:180-421
               
               
               Cow position:chr15:22930099-22930347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:172
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):35, 115

               
               
               Conread position:181-508
               
               
               Cow position:chr15:43612307-43612000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:230
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):166, 39

               
               
               Conread position:182-410
               
               
               Cow position:chr15:7307914-7308143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):47, 67

               
               
               Conread position:185-426
               
               
               Cow position:chr15:50089218-50088978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):45, 38

               
               
               Conread position:190-343
               
               
               Cow position:chr15:31502572-31502720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:190-413
               
               
               Cow position:chr15:38036708-38036936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):35, 109

               
               
               Conread position:191-469
               
               
               Cow position:chr15:53716662-53716392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:185
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):154, 28

               
               
               Conread position:191-508
               
               
               Cow position:chr15:37918874-37918562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:221
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):36, 6

               
               
               Conread position:192-434
               
               
               Cow position:chr15:9107265-9107025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):156, 110

               
               
               Conread position:192-448
               
               
               Cow position:chr15:915617-915865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):23, 36

               
               
               Conread position:192-449
               
               
               Cow position:chr15:12870635-12870889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:188
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):156, 104

               
               
               Conread position:192-449
               
               
               Cow position:chr15:14576563-14576303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):121, 28

               
               
               Conread position:192-449
               
               
               Cow position:chr15:28823590-28823842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):159, 35

               
               
               Conread position:192-449
               
               
               Cow position:chr15:29331232-29330981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:186
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):88, 27

               
               
               Conread position:192-471
               
               
               Cow position:chr15:4418172-4418444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):23, 103

               
               
               Conread position:192-506
               
               
               Cow position:chr15:24864044-24864345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):157, 28

               
               
               Conread position:198-432
               
               
               Cow position:chr15:1857950-1857717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:172
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):47, 22

               
               
               Conread position:198-443
               
               
               Cow position:chr15:43599408-43599170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):147, 16

               
               
               Conread position:199-447
               
               
               Cow position:chr15:5567164-5566907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):19, 216

               
               
               Conread position:200-508
               
               
               Cow position:chr15:10231521-10231845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:224
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:201-500
               
               
               Cow position:chr15:30470750-30471045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:207
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):132, 18

               
               
               Conread position:202-447
               
               
               Cow position:chr15:662250-662491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):73, 17

               
               
               Conread position:205-470
               
               
               Cow position:chr15:33178209-33178471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:198
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):140, 15

               
               
               Conread position:205-508
               
               
               Cow position:chr15:51307464-51307772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:216
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):140, 20

               
               
               Conread position:206-451
               
               
               Cow position:chr15:5930107-5929870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):23, 14

               
               
               Conread position:208-502
               
               
               Cow position:chr15:39326299-39326597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:215
               
               
               Alignm E-value:8.96831e-44
               
               
               Alignm gaps (pig, cow):21, 100

               
               
               Conread position:209-508
               
               
               Cow position:chr15:8022261-8021972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:212
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):34, 14

               
               
               Conread position:213-508
               
               
               Cow position:chr15:4508357-4508067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):140, 93

               
               
               Conread position:214-447
               
               
               Cow position:chr15:5158581-5158351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):134, 6

               
               
               Conread position:215-421
               
               
               Cow position:chr15:29900324-29900527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):28, 90

               
               
               Conread position:220-451
               
               
               Cow position:chr15:34284210-34284438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):129, 51

               
               
               Conread position:224-449
               
               
               Cow position:chr15:35204951-35205177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:157
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):129, 78

               
               
               Conread position:225-508
               
               
               Cow position:chr15:35967292-35967567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):18, 87

               
               
               Conread position:227-452
               
               
               Cow position:chr15:10660357-10660583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):121, 86

               
               
               Conread position:227-473
               
               
               Cow position:chr15:40498097-40498342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:166
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):118, 22

               
               
               Conread position:227-504
               
               
               Cow position:chr15:14758057-14758329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:194
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):16, 80

               
               
               Conread position:227-508
               
               
               Cow position:chr15:6749653-6749929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:209
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):16, 48

               
               
               Conread position:227-508
               
               
               Cow position:chr15:19950668-19950384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):172, 43

               
               
               Conread position:229-448
               
               
               Cow position:chr15:12843-12624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):111, 18

               
               
               Conread position:229-449
               
               
               Cow position:chr15:9465870-9465652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):81, 54

               
               
               Conread position:230-449
               
               
               Cow position:chr15:31928707-31928921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):118, 48

               
               
               Conread position:230-449
               
               
               Cow position:chr15:35440884-35441103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:171
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):81, 139

               
               
               Conread position:232-408
               
               
               Cow position:chr15:37865559-37865382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):82, 66

               
               
               Conread position:235-403
               
               
               Cow position:chr15:44250840-44250670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:130
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):25, 68

               
               
               Conread position:240-503
               
               
               Cow position:chr15:44879784-44879527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:176
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):100, 73

               
               
               Conread position:242-508
               
               
               Cow position:chr15:43130495-43130240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:196
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):105, 59

               
               
               Conread position:243-508
               
               
               Cow position:chr15:23109100-23109367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:185
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):59, 32

               
               
               Conread position:244-448
               
               
               Cow position:chr15:31175978-31175769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:150
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):61, 134

               
               
               Conread position:244-506
               
               
               Cow position:chr15:449883-450132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:185
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):105, 20

               
               
               Conread position:248-434
               
               
               Cow position:chr15:36793313-36793503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):53, 184

               
               
               Conread position:248-449
               
               
               Cow position:chr15:41527803-41527997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):100, 45

               
               
               Conread position:250-449
               
               
               Cow position:chr15:16908603-16908408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:140
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):99, 30

               
               
               Conread position:251-508
               
               
               Cow position:chr15:5717883-5717617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:189
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):97, 48

               
               
               Conread position:258-508
               
               
               Cow position:chr15:47821539-47821295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:178
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):91, 38

               
               
               Conread position:259-449
               
               
               Cow position:chr15:9497337-9497525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:147
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):60, 46

               
               
               Conread position:259-449
               
               
               Cow position:chr15:14176337-14176524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):89, 40

               
               
               Conread position:259-508
               
               
               Cow position:chr15:37284616-37284377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):92, 12

               
               
               Conread position:262-449
               
               
               Cow position:chr15:32977685-32977871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:140
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):86, 37

               
               
               Conread position:262-508
               
               
               Cow position:chr15:19920175-19920412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:176
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):118, 40

               
               
               Conread position:266-446
               
               
               Cow position:chr15:6272732-6272909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:131
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):85, 15

               
               
               Conread position:267-448
               
               
               Cow position:chr15:44237573-44237393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):80, 26

               
               
               Conread position:268-426
               
               
               Cow position:chr15:36618256-36618100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:123
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):80, 27

               
               
               Conread position:270-449
               
               
               Cow position:chr15:47843937-47844118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:131
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):45, 13

               
               
               Conread position:274-451
               
               
               Cow position:chr15:50660778-50660596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):25, 177

               
               
               Conread position:275-449
               
               
               Cow position:chr15:31025138-31024968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):122, 23

               
               
               Conread position:282-443
               
               
               Cow position:chr15:44280242-44280083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):66, 20

               
               
               Conread position:290-434
               
               
               Cow position:chr15:41583017-41582870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:113
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:290-508
               
               
               Cow position:chr15:20370595-20370808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:152
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):59, 16

               
               
               Conread position:293-446
               
               
               Cow position:chr15:31637434-31637279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:113
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:297-449
               
               
               Cow position:chr15:39520297-39520143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:297-508
               
               
               Cow position:chr15:23992974-23992766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:160
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):100, 57

               
               
               Conread position:299-508
               
               
               Cow position:chr15:30958092-30958294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):48, 14

               
               
               Conread position:302-505
               
               
               Cow position:chr15:20778140-20777936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):12, 22

               
               
               Conread position:303-449
               
               
               Cow position:chr15:14261135-14261282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):7, 46

               
               
               Conread position:303-452
               
               
               Cow position:chr15:31495100-31495251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):10, 28

               
               
               Conread position:305-450
               
               
               Cow position:chr15:23719362-23719509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:109
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:305-508
               
               
               Cow position:chr15:1017626-1017832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):44, 119

               
               
               Conread position:306-448
               
               
               Cow position:chr15:36388411-36388267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:109
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:306-503
               
               
               Cow position:chr15:10303341-10303143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):8, 20

               
               
               Conread position:307-464
               
               
               Cow position:chr15:30005196-30005343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):90, 41

               
               
               Conread position:308-507
               
               
               Cow position:chr15:38846019-38845823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):40, 120

               
               
               Conread position:310-471
               
               
               Cow position:chr15:8427322-8427483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):88, 40

               
               
               Conread position:319-448
               
               
               Cow position:chr15:10431920-10431789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:100
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:320-449
               
               
               Cow position:chr15:18776645-18776776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:102
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:327-447
               
               
               Cow position:chr15:40309490-40309369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:96
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):21, 87

               
               
               Conread position:327-448
               
               
               Cow position:chr15:12332573-12332450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:96
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:330-426
               
               
               Cow position:chr15:37231893-37231991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:99
               
               
               Alignm identity:84
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:330-451
               
               
               Cow position:chr15:26529986-26529863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:97
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:340-505
               
               
               Cow position:chr15:21682005-21681836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:346-473
               
               
               Cow position:chr15:31502807-31502935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:102
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:346-504
               
               
               Cow position:chr15:7059327-7059484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):53, 7

               
               
               Conread position:346-508
               
               
               Cow position:chr15:31483448-31483285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:122
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:349-508
               
               
               Cow position:chr15:51361300-51361140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:1-397
               
               
               Cow position:chr16:48520124-48520522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:253
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):119, 291

               
               
               Conread position:6-432
               
               
               Cow position:chr16:28833513-28833940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 142

               
               
               Conread position:6-443
               
               
               Cow position:chr16:18758168-18757730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 103

               
               
               Conread position:10-443
               
               
               Cow position:chr16:48398566-48398145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 11

               
               
               Conread position:11-460
               
               
               Cow position:chr16:26677000-26676560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 78

               
               
               Conread position:11-506
               
               
               Cow position:chr16:27013581-27014072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:366
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 59

               
               
               Conread position:12-506
               
               
               Cow position:chr16:30639017-30639496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:505
               
               
               Alignm identity:355
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 218

               
               
               Conread position:12-508
               
               
               Cow position:chr16:23025014-23025507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 219

               
               
               Conread position:15-364
               
               
               Cow position:chr16:4712582-4712929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 175

               
               
               Conread position:15-397
               
               
               Cow position:chr16:32586883-32587266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:255
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):94, 46

               
               
               Conread position:15-405
               
               
               Cow position:chr16:46752598-46752200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 226

               
               
               Conread position:15-452
               
               
               Cow position:chr16:3633797-3634234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 50

               
               
               Conread position:15-470
               
               
               Cow position:chr16:4910847-4910389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 52

               
               
               Conread position:16-284
               
               
               Cow position:chr16:7021991-7021717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:177
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:16-290
               
               
               Cow position:chr16:56149995-56150258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:204
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):93, 121

               
               
               Conread position:16-298
               
               
               Cow position:chr16:28816427-28816129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:215
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):60, 221

               
               
               Conread position:16-300
               
               
               Cow position:chr16:30939419-30939702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 45

               
               
               Conread position:16-301
               
               
               Cow position:chr16:55042871-55042588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:199
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):117, 52

               
               
               Conread position:16-304
               
               
               Cow position:chr16:16424922-16424629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 206

               
               
               Conread position:16-316
               
               
               Cow position:chr16:39385083-39385390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:219
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):83, 212

               
               
               Conread position:16-335
               
               
               Cow position:chr16:9846030-9845707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:222
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):99, 51

               
               
               Conread position:16-337
               
               
               Cow position:chr16:43804181-43804494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 50

               
               
               Conread position:16-343
               
               
               Cow position:chr16:9790944-9790624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 18

               
               
               Conread position:16-346
               
               
               Cow position:chr16:26500846-26501168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:230
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):93, 45

               
               
               Conread position:16-346
               
               
               Cow position:chr16:30311423-30311096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:231
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):93, 22

               
               
               Conread position:16-346
               
               
               Cow position:chr16:51400064-51399741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:235
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):49, 20

               
               
               Conread position:16-350
               
               
               Cow position:chr16:44973170-44973509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 134

               
               
               Conread position:16-354
               
               
               Cow position:chr16:4762811-4763152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:250
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):52, 164

               
               
               Conread position:16-363
               
               
               Cow position:chr16:55308853-55308513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 164

               
               
               Conread position:16-366
               
               
               Cow position:chr16:13791187-13791548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 256

               
               
               Conread position:16-368
               
               
               Cow position:chr16:23363815-23363466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:239
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):101, 158

               
               
               Conread position:16-368
               
               
               Cow position:chr16:23990804-23990446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 41

               
               
               Conread position:16-369
               
               
               Cow position:chr16:44676573-44676908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:242
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):63, 24

               
               
               Conread position:16-390
               
               
               Cow position:chr16:54287557-54287920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 161

               
               
               Conread position:16-396
               
               
               Cow position:chr16:41590470-41590838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):296, 14

               
               
               Conread position:16-396
               
               
               Cow position:chr16:49125838-49125472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 110

               
               
               Conread position:16-397
               
               
               Cow position:chr16:675184-675552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:258
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):95, 42

               
               
               Conread position:16-399
               
               
               Cow position:chr16:5895638-5896017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:247
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):93, 44

               
               
               Conread position:16-399
               
               
               Cow position:chr16:14611360-14611744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:248
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):101, 210

               
               
               Conread position:16-399
               
               
               Cow position:chr16:26610324-26610703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):150, 65

               
               
               Conread position:16-399
               
               
               Cow position:chr16:29051346-29051736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:250
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):50, 318

               
               
               Conread position:16-404
               
               
               Cow position:chr16:17605971-17606367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:273
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):52, 213

               
               
               Conread position:16-408
               
               
               Cow position:chr16:600627-601019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 282

               
               
               Conread position:16-408
               
               
               Cow position:chr16:42970249-42969852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 220

               
               
               Conread position:16-408
               
               
               Cow position:chr16:53554030-53553645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:267
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):93, 38

               
               
               Conread position:16-409
               
               
               Cow position:chr16:39646242-39646620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 107

               
               
               Conread position:16-418
               
               
               Cow position:chr16:4972343-4971943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 268

               
               
               Conread position:16-419
               
               
               Cow position:chr16:9932837-9933241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 156

               
               
               Conread position:16-422
               
               
               Cow position:chr16:16096428-16096824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):332, 30

               
               
               Conread position:16-424
               
               
               Cow position:chr16:42752562-42752940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 29

               
               
               Conread position:16-426
               
               
               Cow position:chr16:20967381-20966969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:253
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):93, 275

               
               
               Conread position:16-426
               
               
               Cow position:chr16:25965191-25965591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 45

               
               
               Conread position:16-427
               
               
               Cow position:chr16:5726612-5727026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):280, 49

               
               
               Conread position:16-427
               
               
               Cow position:chr16:46453081-46452650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:295
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):35, 176

               
               
               Conread position:16-430
               
               
               Cow position:chr16:18141644-18141231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 45

               
               
               Conread position:16-431
               
               
               Cow position:chr16:11775366-11774951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 44

               
               
               Conread position:16-434
               
               
               Cow position:chr16:4626712-4626291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 82

               
               
               Conread position:16-434
               
               
               Cow position:chr16:17142618-17143034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 75

               
               
               Conread position:16-434
               
               
               Cow position:chr16:39474456-39474052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:282
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):93, 172

               
               
               Conread position:16-434
               
               
               Cow position:chr16:52855334-52854922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:293
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):219, 95

               
               
               Conread position:16-434
               
               
               Cow position:chr16:56875967-56875564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:290
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):46, 21

               
               
               Conread position:16-435
               
               
               Cow position:chr16:11105233-11105655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 96

               
               
               Conread position:16-438
               
               
               Cow position:chr16:34210731-34210301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):99, 176

               
               
               Conread position:16-438
               
               
               Cow position:chr16:37924480-37924074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:293
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):158, 50

               
               
               Conread position:16-440
               
               
               Cow position:chr16:56832058-56831636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 118

               
               
               Conread position:16-443
               
               
               Cow position:chr16:11103155-11102712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 161

               
               
               Conread position:16-447
               
               
               Cow position:chr16:8448980-8448542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:302
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):83, 226

               
               
               Conread position:16-447
               
               
               Cow position:chr16:54578854-54579279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:292
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):95, 51

               
               
               Conread position:16-448
               
               
               Cow position:chr16:4399406-4399849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 45

               
               
               Conread position:16-448
               
               
               Cow position:chr16:13195646-13195225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 58

               
               
               Conread position:16-448
               
               
               Cow position:chr16:18354266-18353844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 44

               
               
               Conread position:16-448
               
               
               Cow position:chr16:23737867-23738294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 12

               
               
               Conread position:16-448
               
               
               Cow position:chr16:33704488-33704919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 53

               
               
               Conread position:16-448
               
               
               Cow position:chr16:43801211-43800805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):197, 86

               
               
               Conread position:16-448
               
               
               Cow position:chr16:46552489-46552908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:309
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):52, 169

               
               
               Conread position:16-448
               
               
               Cow position:chr16:49126501-49126072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 155

               
               
               Conread position:16-449
               
               
               Cow position:chr16:5845351-5845784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 32

               
               
               Conread position:16-449
               
               
               Cow position:chr16:7498751-7499165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 157

               
               
               Conread position:16-449
               
               
               Cow position:chr16:7665309-7665752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 286

               
               
               Conread position:16-449
               
               
               Cow position:chr16:7702216-7702634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:300
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):99, 38

               
               
               Conread position:16-449
               
               
               Cow position:chr16:13698190-13698630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 289

               
               
               Conread position:16-449
               
               
               Cow position:chr16:31558574-31559016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:296
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):93, 145

               
               
               Conread position:16-449
               
               
               Cow position:chr16:35187936-35188364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 290

               
               
               Conread position:16-449
               
               
               Cow position:chr16:45609668-45610100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 202

               
               
               Conread position:16-449
               
               
               Cow position:chr16:49169697-49169266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):102, 38

               
               
               Conread position:16-449
               
               
               Cow position:chr16:51113192-51112765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 29

               
               
               Conread position:16-449
               
               
               Cow position:chr16:53509306-53508870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):156, 291

               
               
               Conread position:16-450
               
               
               Cow position:chr16:24825749-24826189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 209

               
               
               Conread position:16-451
               
               
               Cow position:chr16:49230088-49229654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 157

               
               
               Conread position:16-452
               
               
               Cow position:chr16:13611771-13611337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 100

               
               
               Conread position:16-455
               
               
               Cow position:chr16:38664026-38663590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 45

               
               
               Conread position:16-471
               
               
               Cow position:chr16:32837851-32837412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 24

               
               
               Conread position:16-474
               
               
               Cow position:chr16:48341006-48340557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 5

               
               
               Conread position:16-476
               
               
               Cow position:chr16:25170075-25170533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 38

               
               
               Conread position:16-492
               
               
               Cow position:chr16:55586921-55586453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 54

               
               
               Conread position:16-499
               
               
               Cow position:chr16:23066350-23066819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:491
               
               
               Alignm identity:352
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 156

               
               
               Conread position:16-504
               
               
               Cow position:chr16:42339887-42340365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:499
               
               
               Alignm identity:357
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 14

               
               
               Conread position:16-505
               
               
               Cow position:chr16:15808654-15809148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:504
               
               
               Alignm identity:366
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 61

               
               
               Conread position:16-506
               
               
               Cow position:chr16:53267409-53267894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:497
               
               
               Alignm identity:354
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 159

               
               
               Conread position:16-508
               
               
               Cow position:chr16:13989668-13990158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:331
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):158, 93

               
               
               Conread position:16-508
               
               
               Cow position:chr16:23472425-23472934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:517
               
               
               Alignm identity:367
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 166

               
               
               Conread position:16-508
               
               
               Cow position:chr16:33507748-33508232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:501
               
               
               Alignm identity:321
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):93, 45

               
               
               Conread position:16-508
               
               
               Cow position:chr16:40333639-40333143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):158, 92

               
               
               Conread position:17-265
               
               
               Cow position:chr16:15363436-15363677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:169
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):94, 48

               
               
               Conread position:17-369
               
               
               Cow position:chr16:17665321-17665667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:243
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):165, 44

               
               
               Conread position:17-388
               
               
               Cow position:chr16:56913030-56912659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:255
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):84, 26

               
               
               Conread position:17-408
               
               
               Cow position:chr16:33299076-33299468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 61

               
               
               Conread position:17-422
               
               
               Cow position:chr16:16402645-16402239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 210

               
               
               Conread position:17-434
               
               
               Cow position:chr16:5725163-5725567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):331, 74

               
               
               Conread position:17-435
               
               
               Cow position:chr16:28922472-28922874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 146

               
               
               Conread position:17-446
               
               
               Cow position:chr16:43275705-43276130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 205

               
               
               Conread position:17-505
               
               
               Cow position:chr16:7541974-7542475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):200, 152

               
               
               Conread position:17-505
               
               
               Cow position:chr16:8026158-8025680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:496
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 51

               
               
               Conread position:17-505
               
               
               Cow position:chr16:18205644-18206144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:517
               
               
               Alignm identity:364
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 165

               
               
               Conread position:18-317
               
               
               Cow position:chr16:28112230-28111935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):218, 47

               
               
               Conread position:18-332
               
               
               Cow position:chr16:7083049-7082732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 152

               
               
               Conread position:18-346
               
               
               Cow position:chr16:31159886-31159562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:233
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):156, 12

               
               
               Conread position:18-397
               
               
               Cow position:chr16:4981684-4981315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 36

               
               
               Conread position:18-415
               
               
               Cow position:chr16:30143530-30143119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 296

               
               
               Conread position:18-425
               
               
               Cow position:chr16:35757901-35758293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 43

               
               
               Conread position:18-425
               
               
               Cow position:chr16:56185773-56185349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:277
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):100, 146

               
               
               Conread position:18-426
               
               
               Cow position:chr16:42218009-42217598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 52

               
               
               Conread position:18-434
               
               
               Cow position:chr16:7136663-7136245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:283
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):91, 43

               
               
               Conread position:18-434
               
               
               Cow position:chr16:32132214-32132607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 13

               
               
               Conread position:18-449
               
               
               Cow position:chr16:40561910-40562346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 208

               
               
               Conread position:18-476
               
               
               Cow position:chr16:51598918-51598474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 155

               
               
               Conread position:18-506
               
               
               Cow position:chr16:16265413-16264928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 45

               
               
               Conread position:18-508
               
               
               Cow position:chr16:29655012-29655506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:353
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 19

               
               
               Conread position:18-508
               
               
               Cow position:chr16:56231507-56232004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:502
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 207

               
               
               Conread position:19-343
               
               
               Cow position:chr16:29066853-29067168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 225

               
               
               Conread position:21-312
               
               
               Cow position:chr16:32385132-32384842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:209
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):92, 37

               
               
               Conread position:21-452
               
               
               Cow position:chr16:42242431-42242000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 105

               
               
               Conread position:21-503
               
               
               Cow position:chr16:36930628-36930150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:489
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 20

               
               
               Conread position:23-394
               
               
               Cow position:chr16:19757097-19756735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 102

               
               
               Conread position:23-507
               
               
               Cow position:chr16:42734303-42733830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:502
               
               
               Alignm identity:332
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):71, 43

               
               
               Conread position:26-443
               
               
               Cow position:chr16:16548299-16548717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 92

               
               
               Conread position:27-288
               
               
               Cow position:chr16:37442435-37442169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):82, 197

               
               
               Conread position:27-449
               
               
               Cow position:chr16:2223711-2223282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 18

               
               
               Conread position:27-449
               
               
               Cow position:chr16:13307169-13306757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):147, 40

               
               
               Conread position:27-451
               
               
               Cow position:chr16:819948-820371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 18

               
               
               Conread position:29-508
               
               
               Cow position:chr16:53627725-53627261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 32

               
               
               Conread position:30-507
               
               
               Cow position:chr16:15370377-15370874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:501
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 16

               
               
               Conread position:35-447
               
               
               Cow position:chr16:33645715-33646128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 193

               
               
               Conread position:36-397
               
               
               Cow position:chr16:33482141-33482508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:251
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):81, 5

               
               
               Conread position:36-508
               
               
               Cow position:chr16:52789764-52790223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 137

               
               
               Conread position:37-427
               
               
               Cow position:chr16:3246486-3246112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 7

               
               
               Conread position:40-425
               
               
               Cow position:chr16:23482994-23483373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:274
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):63, 164

               
               
               Conread position:41-448
               
               
               Cow position:chr16:13689371-13689780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 8

               
               
               Conread position:43-508
               
               
               Cow position:chr16:8704005-8704429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:312
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):24, 85

               
               
               Conread position:46-298
               
               
               Cow position:chr16:7997902-7997654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:190
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):29, 112

               
               
               Conread position:46-434
               
               
               Cow position:chr16:7456754-7456366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 260

               
               
               Conread position:46-449
               
               
               Cow position:chr16:13579131-13578746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:277
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):65, 138

               
               
               Conread position:46-508
               
               
               Cow position:chr16:29766056-29766512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 57

               
               
               Conread position:47-298
               
               
               Cow position:chr16:38903721-38903476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:187
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):62, 106

               
               
               Conread position:50-464
               
               
               Cow position:chr16:28267294-28266901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:272
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):92, 59

               
               
               Conread position:50-485
               
               
               Cow position:chr16:43506084-43505660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 174

               
               
               Conread position:51-397
               
               
               Cow position:chr16:34168312-34168648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:245
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):58, 244

               
               
               Conread position:52-400
               
               
               Cow position:chr16:24672638-24672293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 14

               
               
               Conread position:54-434
               
               
               Cow position:chr16:22804861-22804498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:264
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):57, 119

               
               
               Conread position:54-449
               
               
               Cow position:chr16:15960574-15960175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 176

               
               
               Conread position:54-508
               
               
               Cow position:chr16:14106366-14106836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:320
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):47, 110

               
               
               Conread position:57-356
               
               
               Cow position:chr16:39417384-39417099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:209
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):288, 11

               
               
               Conread position:58-300
               
               
               Cow position:chr16:30209487-30209723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):53, 100

               
               
               Conread position:65-426
               
               
               Cow position:chr16:10040106-10039755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:246
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):44, 8

               
               
               Conread position:65-508
               
               
               Cow position:chr16:14754591-14754136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 155

               
               
               Conread position:65-508
               
               
               Cow position:chr16:51070198-51069742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 95

               
               
               Conread position:66-338
               
               
               Cow position:chr16:4103422-4103160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:66-364
               
               
               Cow position:chr16:27004930-27005232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):11, 160

               
               
               Conread position:66-403
               
               
               Cow position:chr16:8367093-8366762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:242
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):34, 160

               
               
               Conread position:66-434
               
               
               Cow position:chr16:52889678-52889312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 165

               
               
               Conread position:66-436
               
               
               Cow position:chr16:11153456-11153090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:258
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):50, 61

               
               
               Conread position:66-448
               
               
               Cow position:chr16:47662445-47662843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:275
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):43, 108

               
               
               Conread position:66-449
               
               
               Cow position:chr16:7619464-7619070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:279
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):43, 100

               
               
               Conread position:66-472
               
               
               Cow position:chr16:19976697-19977101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:283
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):39, 156

               
               
               Conread position:67-448
               
               
               Cow position:chr16:8522655-8522276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 100

               
               
               Conread position:67-451
               
               
               Cow position:chr16:5256736-5257113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:262
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):42, 66

               
               
               Conread position:67-504
               
               
               Cow position:chr16:8315442-8315024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 44

               
               
               Conread position:69-508
               
               
               Cow position:chr16:16056299-16055888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:298
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):202, 43

               
               
               Conread position:70-338
               
               
               Cow position:chr16:53613035-53613312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):41, 177

               
               
               Conread position:70-373
               
               
               Cow position:chr16:4372760-4372455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:217
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):23, 181

               
               
               Conread position:70-447
               
               
               Cow position:chr16:17745570-17745949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 152

               
               
               Conread position:70-448
               
               
               Cow position:chr16:52218825-52219184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:249
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):39, 104

               
               
               Conread position:70-449
               
               
               Cow position:chr16:43308825-43308448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):102, 34

               
               
               Conread position:70-449
               
               
               Cow position:chr16:53086588-53086226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 100

               
               
               Conread position:70-508
               
               
               Cow position:chr16:18693394-18692975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 124

               
               
               Conread position:70-508
               
               
               Cow position:chr16:19670595-19670166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:311
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):35, 22

               
               
               Conread position:70-508
               
               
               Cow position:chr16:29095690-29096109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 101

               
               
               Conread position:71-383
               
               
               Cow position:chr16:3628555-3628863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:211
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):172, 96

               
               
               Conread position:71-391
               
               
               Cow position:chr16:30515843-30515533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:221
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):103, 39

               
               
               Conread position:71-397
               
               
               Cow position:chr16:44744395-44744071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:239
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):38, 81

               
               
               Conread position:71-408
               
               
               Cow position:chr16:46253952-46253612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:235
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):38, 72

               
               
               Conread position:71-448
               
               
               Cow position:chr16:4499178-4499542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):172, 42

               
               
               Conread position:71-448
               
               
               Cow position:chr16:20634133-20633762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):317, 38

               
               
               Conread position:71-448
               
               
               Cow position:chr16:37669991-37669623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:256
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):39, 67

               
               
               Conread position:71-449
               
               
               Cow position:chr16:48145662-48145288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:264
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):38, 101

               
               
               Conread position:71-464
               
               
               Cow position:chr16:13181477-13181868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:273
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):38, 72

               
               
               Conread position:71-484
               
               
               Cow position:chr16:48385664-48385245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 130

               
               
               Conread position:71-508
               
               
               Cow position:chr16:44121-44537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 152

               
               
               Conread position:72-359
               
               
               Cow position:chr16:22868439-22868154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:215
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):18, 205

               
               
               Conread position:73-340
               
               
               Cow position:chr16:25287951-25287687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:203
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):38, 153

               
               
               Conread position:73-427
               
               
               Cow position:chr16:53892043-53891694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 149

               
               
               Conread position:74-446
               
               
               Cow position:chr16:20025184-20025553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 99

               
               
               Conread position:74-508
               
               
               Cow position:chr16:48492926-48493354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 35

               
               
               Conread position:75-449
               
               
               Cow position:chr16:45785483-45785852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:233
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):34, 14

               
               
               Conread position:77-320
               
               
               Cow position:chr16:5243706-5243958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:77-397
               
               
               Cow position:chr16:35195867-35195551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):34, 161

               
               
               Conread position:77-440
               
               
               Cow position:chr16:16597305-16597663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:248
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):32, 142

               
               
               Conread position:77-448
               
               
               Cow position:chr16:42257198-42257561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:255
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):83, 36

               
               
               Conread position:78-434
               
               
               Cow position:chr16:26649889-26649529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:240
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):36, 147

               
               
               Conread position:78-448
               
               
               Cow position:chr16:22850073-22850439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:247
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):33, 141

               
               
               Conread position:78-449
               
               
               Cow position:chr16:8933675-8933313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 74

               
               
               Conread position:79-309
               
               
               Cow position:chr16:36911286-36911068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):36, 65

               
               
               Conread position:79-391
               
               
               Cow position:chr16:47245333-47245645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:217
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):30, 95

               
               
               Conread position:79-430
               
               
               Cow position:chr16:19152442-19152791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:234
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):30, 166

               
               
               Conread position:79-449
               
               
               Cow position:chr16:238006-238382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 147

               
               
               Conread position:79-508
               
               
               Cow position:chr16:39164991-39165425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 89

               
               
               Conread position:80-497
               
               
               Cow position:chr16:43661198-43661612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 75

               
               
               Conread position:80-505
               
               
               Cow position:chr16:26373205-26372774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 72

               
               
               Conread position:81-434
               
               
               Cow position:chr16:14242122-14242468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 90

               
               
               Conread position:81-439
               
               
               Cow position:chr16:48006744-48006388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:255
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):33, 144

               
               
               Conread position:81-449
               
               
               Cow position:chr16:22842306-22841945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:253
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):30, 93

               
               
               Conread position:83-300
               
               
               Cow position:chr16:30909182-30908958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:159
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:83-434
               
               
               Cow position:chr16:38905477-38905134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 105

               
               
               Conread position:83-449
               
               
               Cow position:chr16:42633999-42633629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 70

               
               
               Conread position:84-427
               
               
               Cow position:chr16:13969629-13969277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 106

               
               
               Conread position:89-427
               
               
               Cow position:chr16:45703221-45702879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:233
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):11, 66

               
               
               Conread position:89-508
               
               
               Cow position:chr16:54515482-54515892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:283
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):12, 75

               
               
               Conread position:90-448
               
               
               Cow position:chr16:14568728-14568375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 134

               
               
               Conread position:91-506
               
               
               Cow position:chr16:15504765-15504342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:280
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):87, 15

               
               
               Conread position:91-508
               
               
               Cow position:chr16:52577216-52577631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 139

               
               
               Conread position:92-364
               
               
               Cow position:chr16:33791085-33790799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:198
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):19, 149

               
               
               Conread position:92-427
               
               
               Cow position:chr16:13601311-13600990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:235
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):307, 20

               
               
               Conread position:92-432
               
               
               Cow position:chr16:44210792-44210460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:235
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):17, 71

               
               
               Conread position:94-402
               
               
               Cow position:chr16:13233184-13232881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 93

               
               
               Conread position:94-449
               
               
               Cow position:chr16:5896183-5896533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:94-508
               
               
               Cow position:chr16:19003307-19002918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 14

               
               
               Conread position:96-399
               
               
               Cow position:chr16:53048313-53048617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):13, 141

               
               
               Conread position:96-441
               
               
               Cow position:chr16:56082598-56082258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 114

               
               
               Conread position:96-449
               
               
               Cow position:chr16:10032392-10032753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:246
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):127, 71

               
               
               Conread position:96-504
               
               
               Cow position:chr16:21904928-21905310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:288
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):78, 12

               
               
               Conread position:96-507
               
               
               Cow position:chr16:25839380-25839802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 59

               
               
               Conread position:96-508
               
               
               Cow position:chr16:11008105-11008520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 27

               
               
               Conread position:97-312
               
               
               Cow position:chr16:51531206-51530988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:160
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):55, 11

               
               
               Conread position:97-429
               
               
               Cow position:chr16:32327416-32327753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 123

               
               
               Conread position:97-448
               
               
               Cow position:chr16:30037230-30036877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 25

               
               
               Conread position:97-452
               
               
               Cow position:chr16:4192656-4192316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:236
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):14, 154

               
               
               Conread position:97-507
               
               
               Cow position:chr16:45047859-45047464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):323, 64

               
               
               Conread position:98-312
               
               
               Cow position:chr16:4875766-4875974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:155
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):145, 14

               
               
               Conread position:98-343
               
               
               Cow position:chr16:23810687-23810918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):9, 57

               
               
               Conread position:98-377
               
               
               Cow position:chr16:45534947-45535220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):11, 61

               
               
               Conread position:98-397
               
               
               Cow position:chr16:1725308-1725012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:212
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):14, 50

               
               
               Conread position:98-436
               
               
               Cow position:chr16:41608372-41608709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:244
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):11, 135

               
               
               Conread position:98-448
               
               
               Cow position:chr16:7152409-7152058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 213

               
               
               Conread position:98-449
               
               
               Cow position:chr16:37452850-37452499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 33

               
               
               Conread position:98-452
               
               
               Cow position:chr16:8812323-8811978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:248
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):11, 33

               
               
               Conread position:109-469
               
               
               Cow position:chr16:52636605-52636251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:246
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):65, 140

               
               
               Conread position:110-402
               
               
               Cow position:chr16:24747087-24747353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:208
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):238, 34

               
               
               Conread position:110-434
               
               
               Cow position:chr16:32781140-32781463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:223
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):64, 113

               
               
               Conread position:110-508
               
               
               Cow position:chr16:28396317-28395899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:286
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):109, 16

               
               
               Conread position:110-508
               
               
               Cow position:chr16:49336005-49336412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:279
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):83, 182

               
               
               Conread position:112-350
               
               
               Cow position:chr16:25463553-25463792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:171
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):101, 192

               
               
               Conread position:112-451
               
               
               Cow position:chr16:53830810-53830475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:234
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):9, 54

               
               
               Conread position:112-457
               
               
               Cow position:chr16:42443934-42444277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:248
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):62, 9

               
               
               Conread position:113-427
               
               
               Cow position:chr16:8323205-8322889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 109

               
               
               Conread position:113-434
               
               
               Cow position:chr16:12361191-12360873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):235, 65

               
               
               Conread position:113-449
               
               
               Cow position:chr16:13713133-13712818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:234
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):43, 105

               
               
               Conread position:113-449
               
               
               Cow position:chr16:50288938-50289265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):232, 61

               
               
               Conread position:113-475
               
               
               Cow position:chr16:43105732-43105378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):235, 167

               
               
               Conread position:115-368
               
               
               Cow position:chr16:13973498-13973253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):69, 25

               
               
               Conread position:115-506
               
               
               Cow position:chr16:28692927-28692569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:266
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):337, 38

               
               
               Conread position:116-364
               
               
               Cow position:chr16:30705890-30706136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):58, 158

               
               
               Conread position:116-408
               
               
               Cow position:chr16:594445-594150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):99, 184

               
               
               Conread position:116-449
               
               
               Cow position:chr16:31117836-31117500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:232
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):88, 109

               
               
               Conread position:117-485
               
               
               Cow position:chr16:27262160-27261804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):194, 44

               
               
               Conread position:117-508
               
               
               Cow position:chr16:51696880-51697267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:278
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):108, 55

               
               
               Conread position:118-508
               
               
               Cow position:chr16:14974747-14974376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 102

               
               
               Conread position:120-403
               
               
               Cow position:chr16:22860971-22860700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:197
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):69, 51

               
               
               Conread position:120-439
               
               
               Cow position:chr16:12060201-12060521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:224
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):50, 103

               
               
               Conread position:120-449
               
               
               Cow position:chr16:8193233-8193568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 161

               
               
               Conread position:122-449
               
               
               Cow position:chr16:8066091-8065773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):61, 66

               
               
               Conread position:123-508
               
               
               Cow position:chr16:41530500-41530116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):225, 173

               
               
               Conread position:126-449
               
               
               Cow position:chr16:11957790-11957463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):172, 0

               
               
               Conread position:126-508
               
               
               Cow position:chr16:52275336-52274943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):219, 94

               
               
               Conread position:127-412
               
               
               Cow position:chr16:16552358-16552639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):102, 6

               
               
               Conread position:128-451
               
               
               Cow position:chr16:17982348-17982026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:233
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):43, 16

               
               
               Conread position:131-394
               
               
               Cow position:chr16:39237742-39238005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:198
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):43, 92

               
               
               Conread position:132-508
               
               
               Cow position:chr16:11085579-11085208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 62

               
               
               Conread position:133-449
               
               
               Cow position:chr16:14685588-14685275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):212, 86

               
               
               Conread position:133-449
               
               
               Cow position:chr16:17626731-17627044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:223
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):215, 170

               
               
               Conread position:134-493
               
               
               Cow position:chr16:44723217-44722877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:245
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):33, 87

               
               
               Conread position:140-443
               
               
               Cow position:chr16:41697283-41696983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:214
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):34, 68

               
               
               Conread position:140-449
               
               
               Cow position:chr16:20205260-20205576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:210
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):34, 162

               
               
               Conread position:140-503
               
               
               Cow position:chr16:46628028-46627679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 81

               
               
               Conread position:140-505
               
               
               Cow position:chr16:6344631-6344269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 86

               
               
               Conread position:140-508
               
               
               Cow position:chr16:22808743-22808382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):200, 37

               
               
               Conread position:150-473
               
               
               Cow position:chr16:10303929-10303612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:218
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):93, 11

               
               
               Conread position:157-429
               
               
               Cow position:chr16:54083859-54084131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:192
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):21, 136

               
               
               Conread position:157-447
               
               
               Cow position:chr16:7549793-7550080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):191, 62

               
               
               Conread position:157-448
               
               
               Cow position:chr16:34153749-34153457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):64, 148

               
               
               Conread position:157-448
               
               
               Cow position:chr16:45456784-45457076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):127, 15

               
               
               Conread position:157-449
               
               
               Cow position:chr16:8076683-8076387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 0

               
               
               Conread position:157-472
               
               
               Cow position:chr16:5836407-5836724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):19, 60

               
               
               Conread position:157-508
               
               
               Cow position:chr16:45692966-45693316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 67

               
               
               Conread position:158-397
               
               
               Cow position:chr16:10651065-10650826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:182
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):9, 62

               
               
               Conread position:158-476
               
               
               Cow position:chr16:42200716-42201040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):15, 155

               
               
               Conread position:159-419
               
               
               Cow position:chr16:22008988-22009231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):189, 60

               
               
               Conread position:160-451
               
               
               Cow position:chr16:47854770-47855055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:207
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):14, 111

               
               
               Conread position:161-426
               
               
               Cow position:chr16:591983-591719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:189
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):55, 121

               
               
               Conread position:161-444
               
               
               Cow position:chr16:38119616-38119340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:198
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):26, 80

               
               
               Conread position:161-447
               
               
               Cow position:chr16:52133686-52133404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:207
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):68, 135

               
               
               Conread position:161-449
               
               
               Cow position:chr16:31348938-31348651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):184, 58

               
               
               Conread position:161-506
               
               
               Cow position:chr16:38620791-38621126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):181, 65

               
               
               Conread position:161-507
               
               
               Cow position:chr16:7442273-7441909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:251
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):61, 140

               
               
               Conread position:161-508
               
               
               Cow position:chr16:41689527-41689864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 11

               
               
               Conread position:164-302
               
               
               Cow position:chr16:30045748-30045890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:106
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:164-434
               
               
               Cow position:chr16:25386813-25387073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:183
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):181, 55

               
               
               Conread position:164-504
               
               
               Cow position:chr16:689540-689872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 80

               
               
               Conread position:165-490
               
               
               Cow position:chr16:23366075-23366401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:220
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):22, 35

               
               
               Conread position:166-427
               
               
               Cow position:chr16:50521312-50521569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):179, 59

               
               
               Conread position:167-449
               
               
               Cow position:chr16:35296908-35297192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):172, 75

               
               
               Conread position:169-386
               
               
               Cow position:chr16:13792819-13792607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:160
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):180, 19

               
               
               Conread position:172-359
               
               
               Cow position:chr16:33229917-33230100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):50, 25

               
               
               Conread position:172-449
               
               
               Cow position:chr16:22380515-22380239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:203
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):53, 128

               
               
               Conread position:172-499
               
               
               Cow position:chr16:22872527-22872215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:217
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):70, 47

               
               
               Conread position:173-449
               
               
               Cow position:chr16:12273909-12274183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:190
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):175, 121

               
               
               Conread position:173-479
               
               
               Cow position:chr16:38243821-38243518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):224, 129

               
               
               Conread position:174-432
               
               
               Cow position:chr16:29712262-29712516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:183
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):102, 119

               
               
               Conread position:174-449
               
               
               Cow position:chr16:25380654-25380380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):52, 127

               
               
               Conread position:174-469
               
               
               Cow position:chr16:9444806-9445094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):173, 45

               
               
               Conread position:174-507
               
               
               Cow position:chr16:27723058-27723402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):120, 12

               
               
               Conread position:175-356
               
               
               Cow position:chr16:16280601-16280427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:130
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):173, 11

               
               
               Conread position:175-434
               
               
               Cow position:chr16:12320065-12320321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):174, 44

               
               
               Conread position:180-463
               
               
               Cow position:chr16:52222480-52222203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:198
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):63, 41

               
               
               Conread position:187-473
               
               
               Cow position:chr16:47368616-47368896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:190
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):29, 58

               
               
               Conread position:188-449
               
               
               Cow position:chr16:54341844-54342101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:177
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):160, 32

               
               
               Conread position:192-448
               
               
               Cow position:chr16:10772993-10773235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:184
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):207, 28

               
               
               Conread position:192-508
               
               
               Cow position:chr16:33596075-33595756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:229
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):30, 105

               
               
               Conread position:193-506
               
               
               Cow position:chr16:54710172-54709863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):206, 26

               
               
               Conread position:196-448
               
               
               Cow position:chr16:41578090-41578340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):153, 23

               
               
               Conread position:196-448
               
               
               Cow position:chr16:56565460-56565710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):19, 101

               
               
               Conread position:196-508
               
               
               Cow position:chr16:50453626-50453940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):149, 98

               
               
               Conread position:197-369
               
               
               Cow position:chr16:30136029-30135859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:131
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):148, 97

               
               
               Conread position:198-397
               
               
               Cow position:chr16:19047572-19047372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):31, 103

               
               
               Conread position:198-434
               
               
               Cow position:chr16:40446118-40446361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):24, 183

               
               
               Conread position:199-425
               
               
               Cow position:chr16:33267583-33267804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):198, 92

               
               
               Conread position:199-450
               
               
               Cow position:chr16:7583264-7583513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:179
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):149, 92

               
               
               Conread position:199-505
               
               
               Cow position:chr16:36121113-36120807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):149, 97

               
               
               Conread position:200-426
               
               
               Cow position:chr16:30369221-30369439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):128, 31

               
               
               Conread position:200-502
               
               
               Cow position:chr16:12072508-12072802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:209
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):17, 28

               
               
               Conread position:203-452
               
               
               Cow position:chr16:23955955-23955714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:185
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):145, 29

               
               
               Conread position:206-451
               
               
               Cow position:chr16:11082883-11083114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):142, 14

               
               
               Conread position:209-450
               
               
               Cow position:chr16:10945555-10945325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):12, 84

               
               
               Conread position:210-439
               
               
               Cow position:chr16:21762093-21761865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:157
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):142, 9

               
               
               Conread position:214-447
               
               
               Cow position:chr16:56796784-56796553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):134, 88

               
               
               Conread position:215-508
               
               
               Cow position:chr16:22206958-22207249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):109, 43

               
               
               Conread position:216-508
               
               
               Cow position:chr16:54226715-54226422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):129, 80

               
               
               Conread position:218-434
               
               
               Cow position:chr16:50667171-50667391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:158
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:219-447
               
               
               Cow position:chr16:44683772-44683544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):75, 16

               
               
               Conread position:220-508
               
               
               Cow position:chr16:44581183-44580903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):129, 29

               
               
               Conread position:221-508
               
               
               Cow position:chr16:21317707-21317417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:213
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):82, 49

               
               
               Conread position:223-449
               
               
               Cow position:chr16:43674765-43674989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:171
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):113, 65

               
               
               Conread position:224-432
               
               
               Cow position:chr16:33869869-33869668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):121, 69

               
               
               Conread position:224-448
               
               
               Cow position:chr16:18052222-18052444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:163
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):69, 84

               
               
               Conread position:224-452
               
               
               Cow position:chr16:27160974-27160746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:175
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):124, 72

               
               
               Conread position:226-440
               
               
               Cow position:chr16:18072067-18072278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):119, 81

               
               
               Conread position:228-447
               
               
               Cow position:chr16:30186539-30186755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:161
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):120, 71

               
               
               Conread position:229-508
               
               
               Cow position:chr16:40514584-40514301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:194
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):120, 71

               
               
               Conread position:230-440
               
               
               Cow position:chr16:42176541-42176751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:151
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):25, 58

               
               
               Conread position:237-399
               
               
               Cow position:chr16:20871931-20872086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):111, 25

               
               
               Conread position:242-449
               
               
               Cow position:chr16:48545730-48545936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):106, 49

               
               
               Conread position:244-482
               
               
               Cow position:chr16:37719069-37719306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):105, 30

               
               
               Conread position:244-483
               
               
               Cow position:chr16:26030973-26030740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):105, 61

               
               
               Conread position:244-505
               
               
               Cow position:chr16:42312297-42312554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:180
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):74, 62

               
               
               Conread position:248-449
               
               
               Cow position:chr16:44428795-44428998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:148
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:250-462
               
               
               Cow position:chr16:41711599-41711799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):95, 56

               
               
               Conread position:250-499
               
               
               Cow position:chr16:16570832-16571083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):95, 57

               
               
               Conread position:250-505
               
               
               Cow position:chr16:16946621-16946362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):95, 51

               
               
               Conread position:250-506
               
               
               Cow position:chr16:50931599-50931343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:192
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):147, 54

               
               
               Conread position:250-508
               
               
               Cow position:chr16:56665491-56665758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):99, 48

               
               
               Conread position:251-432
               
               
               Cow position:chr16:13648255-13648425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):146, 43

               
               
               Conread position:251-449
               
               
               Cow position:chr16:30359142-30358948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:148
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):97, 42

               
               
               Conread position:251-449
               
               
               Cow position:chr16:56671002-56670804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):97, 34

               
               
               Conread position:253-431
               
               
               Cow position:chr16:31426264-31426439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:128
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):97, 48

               
               
               Conread position:253-432
               
               
               Cow position:chr16:9500437-9500619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):46, 179

               
               
               Conread position:255-432
               
               
               Cow position:chr16:1220260-1220082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:127
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):46, 116

               
               
               Conread position:255-434
               
               
               Cow position:chr16:38091302-38091123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):94, 65

               
               
               Conread position:256-448
               
               
               Cow position:chr16:8273914-8273724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):92, 38

               
               
               Conread position:257-401
               
               
               Cow position:chr16:15752628-15752767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:113
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):91, 38

               
               
               Conread position:260-448
               
               
               Cow position:chr16:9161006-9161197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:138
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:261-439
               
               
               Cow position:chr16:11135054-11134876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):88, 50

               
               
               Conread position:263-508
               
               
               Cow position:chr16:42433185-42432925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:268-451
               
               
               Cow position:chr16:46430217-46430036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):20, 29

               
               
               Conread position:271-504
               
               
               Cow position:chr16:30601355-30601589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):52, 25

               
               
               Conread position:272-448
               
               
               Cow position:chr16:55945203-55945026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:274-449
               
               
               Cow position:chr16:13414728-13414551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:282-459
               
               
               Cow position:chr16:56104964-56104789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):67, 46

               
               
               Conread position:283-480
               
               
               Cow position:chr16:15953872-15953675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:149
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):66, 23

               
               
               Conread position:285-508
               
               
               Cow position:chr16:7394982-7394747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):64, 211

               
               
               Conread position:287-449
               
               
               Cow position:chr16:9578542-9578377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:291-449
               
               
               Cow position:chr16:12010051-12010210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:115
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):58, 5

               
               
               Conread position:298-463
               
               
               Cow position:chr16:22738240-22738404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):13, 49

               
               
               Conread position:299-508
               
               
               Cow position:chr16:53408967-53408755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:150
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):51, 160

               
               
               Conread position:304-508
               
               
               Cow position:chr16:32893596-32893811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:148
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:306-448
               
               
               Cow position:chr16:30174558-30174417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:109
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):93, 42

               
               
               Conread position:307-508
               
               
               Cow position:chr16:29636259-29636053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:145
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):42, 16

               
               
               Conread position:308-507
               
               
               Cow position:chr16:47909370-47909170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:145
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):41, 15

               
               
               Conread position:308-508
               
               
               Cow position:chr16:11359123-11359339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:158
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:312-452
               
               
               Cow position:chr16:7496234-7496372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:109
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):36, 9

               
               
               Conread position:320-450
               
               
               Cow position:chr16:22824850-22824719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:101
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):28, 127

               
               
               Conread position:320-451
               
               
               Cow position:chr16:15905266-15905133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:104
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:330-449
               
               
               Cow position:chr16:29026202-29026320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:97
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):18, 42

               
               
               Conread position:335-508
               
               
               Cow position:chr16:30929879-30930052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):6, 31

               
               
               Conread position:340-504
               
               
               Cow position:chr16:11653142-11653318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:340-508
               
               
               Cow position:chr16:17474769-17474948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):8, 84

               
               
               Conread position:347-508
               
               
               Cow position:chr16:4102819-4102650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:352-508
               
               
               Cow position:chr16:50114203-50114361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:116
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:356-505
               
               
               Cow position:chr16:10617833-10617683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:366-508
               
               
               Cow position:chr16:47963322-47963465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:112
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:11-448
               
               
               Cow position:chr17:26084751-26085175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 94

               
               
               Conread position:12-302
               
               
               Cow position:chr17:23337295-23337006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:209
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):88, 182

               
               
               Conread position:12-338
               
               
               Cow position:chr17:5896193-5895868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:232
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):66, 138

               
               
               Conread position:12-406
               
               
               Cow position:chr17:37342754-37342376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:268
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):97, 56

               
               
               Conread position:12-434
               
               
               Cow position:chr17:22032964-22032555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 124

               
               
               Conread position:12-451
               
               
               Cow position:chr17:979415-979010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):385, 88

               
               
               Conread position:12-508
               
               
               Cow position:chr17:35388295-35387788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:513
               
               
               Alignm identity:359
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 101

               
               
               Conread position:15-415
               
               
               Cow position:chr17:32651338-32651736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 303

               
               
               Conread position:15-507
               
               
               Cow position:chr17:18490258-18490764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:514
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 46

               
               
               Conread position:16-294
               
               
               Cow position:chr17:41393986-41393711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):93, 21

               
               
               Conread position:16-302
               
               
               Cow position:chr17:3843215-3843490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:206
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):89, 38

               
               
               Conread position:16-308
               
               
               Cow position:chr17:41400246-41399957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):93, 71

               
               
               Conread position:16-314
               
               
               Cow position:chr17:5041955-5041657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 106

               
               
               Conread position:16-314
               
               
               Cow position:chr17:25755507-25755815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:219
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):93, 210

               
               
               Conread position:16-317
               
               
               Cow position:chr17:11386239-11386541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:214
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):82, 94

               
               
               Conread position:16-320
               
               
               Cow position:chr17:21874593-21874278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):93, 151

               
               
               Conread position:16-346
               
               
               Cow position:chr17:242362-242688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 52

               
               
               Conread position:16-346
               
               
               Cow position:chr17:1295848-1295521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 283

               
               
               Conread position:16-346
               
               
               Cow position:chr17:21313092-21312759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 182

               
               
               Conread position:16-357
               
               
               Cow position:chr17:13143959-13143626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 48

               
               
               Conread position:16-363
               
               
               Cow position:chr17:1080727-1081061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:237
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):91, 117

               
               
               Conread position:16-366
               
               
               Cow position:chr17:24549893-24550248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 96

               
               
               Conread position:16-367
               
               
               Cow position:chr17:29364527-29364879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:229
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):101, 19

               
               
               Conread position:16-368
               
               
               Cow position:chr17:12059370-12059020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 15

               
               
               Conread position:16-368
               
               
               Cow position:chr17:26182945-26183301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 171

               
               
               Conread position:16-370
               
               
               Cow position:chr17:23880104-23879746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):97, 35

               
               
               Conread position:16-373
               
               
               Cow position:chr17:16504972-16504616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:233
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):93, 247

               
               
               Conread position:16-373
               
               
               Cow position:chr17:18777067-18776709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:227
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):101, 158

               
               
               Conread position:16-382
               
               
               Cow position:chr17:2006427-2006781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 71

               
               
               Conread position:16-385
               
               
               Cow position:chr17:21439606-21439978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:240
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):101, 295

               
               
               Conread position:16-397
               
               
               Cow position:chr17:14249310-14248908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:273
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):80, 303

               
               
               Conread position:16-399
               
               
               Cow position:chr17:6155764-6156135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:259
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):93, 163

               
               
               Conread position:16-403
               
               
               Cow position:chr17:25145587-25145220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:270
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):83, 160

               
               
               Conread position:16-411
               
               
               Cow position:chr17:34595667-34596057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:270
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):158, 93

               
               
               Conread position:16-415
               
               
               Cow position:chr17:10529018-10528607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:272
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):93, 315

               
               
               Conread position:16-422
               
               
               Cow position:chr17:20022794-20022386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 206

               
               
               Conread position:16-426
               
               
               Cow position:chr17:34079375-34078979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 166

               
               
               Conread position:16-427
               
               
               Cow position:chr17:11216157-11215761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 38

               
               
               Conread position:16-432
               
               
               Cow position:chr17:14033924-14033505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 213

               
               
               Conread position:16-434
               
               
               Cow position:chr17:8690729-8690312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 138

               
               
               Conread position:16-434
               
               
               Cow position:chr17:9853709-9854116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 210

               
               
               Conread position:16-434
               
               
               Cow position:chr17:20993317-20992902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 148

               
               
               Conread position:16-434
               
               
               Cow position:chr17:24823988-24824382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:284
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):333, 45

               
               
               Conread position:16-439
               
               
               Cow position:chr17:6566202-6566626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 21

               
               
               Conread position:16-443
               
               
               Cow position:chr17:9565033-9565449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 14

               
               
               Conread position:16-443
               
               
               Cow position:chr17:21973408-21972981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 89

               
               
               Conread position:16-447
               
               
               Cow position:chr17:21335974-21335539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 14

               
               
               Conread position:16-447
               
               
               Cow position:chr17:40289277-40288847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 45

               
               
               Conread position:16-448
               
               
               Cow position:chr17:12929820-12929379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 292

               
               
               Conread position:16-448
               
               
               Cow position:chr17:13244297-13243896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 21

               
               
               Conread position:16-448
               
               
               Cow position:chr17:13940596-13940168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:286
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):93, 18

               
               
               Conread position:16-448
               
               
               Cow position:chr17:16446706-16446283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 132

               
               
               Conread position:16-448
               
               
               Cow position:chr17:18201500-18201911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:287
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):85, 45

               
               
               Conread position:16-448
               
               
               Cow position:chr17:25740673-25741099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 208

               
               
               Conread position:16-448
               
               
               Cow position:chr17:40771551-40771984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 287

               
               
               Conread position:16-449
               
               
               Cow position:chr17:1493433-1492994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 120

               
               
               Conread position:16-449
               
               
               Cow position:chr17:2810339-2810787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:298
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):76, 15

               
               
               Conread position:16-449
               
               
               Cow position:chr17:5900111-5900524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):267, 48

               
               
               Conread position:16-449
               
               
               Cow position:chr17:11618303-11618739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 193

               
               
               Conread position:16-449
               
               
               Cow position:chr17:11839424-11839877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):128, 97

               
               
               Conread position:16-449
               
               
               Cow position:chr17:14003552-14003980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 123

               
               
               Conread position:16-449
               
               
               Cow position:chr17:21495100-21495526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 105

               
               
               Conread position:16-449
               
               
               Cow position:chr17:21680491-21680934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 209

               
               
               Conread position:16-449
               
               
               Cow position:chr17:24077129-24077556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):173, 57

               
               
               Conread position:16-449
               
               
               Cow position:chr17:25189006-25189440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 38

               
               
               Conread position:16-449
               
               
               Cow position:chr17:26230662-26231109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 296

               
               
               Conread position:16-449
               
               
               Cow position:chr17:32027739-32027297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 291

               
               
               Conread position:16-449
               
               
               Cow position:chr17:32989216-32989631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 146

               
               
               Conread position:16-449
               
               
               Cow position:chr17:32993890-32993469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 146

               
               
               Conread position:16-449
               
               
               Cow position:chr17:38832765-38833198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 206

               
               
               Conread position:16-449
               
               
               Cow position:chr17:41029675-41030092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 284

               
               
               Conread position:16-450
               
               
               Cow position:chr17:12289696-12289253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 207

               
               
               Conread position:16-451
               
               
               Cow position:chr17:17222068-17222497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 14

               
               
               Conread position:16-451
               
               
               Cow position:chr17:30718693-30718261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 45

               
               
               Conread position:16-460
               
               
               Cow position:chr17:21959955-21959522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 14

               
               
               Conread position:16-460
               
               
               Cow position:chr17:25707668-25708121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 45

               
               
               Conread position:16-463
               
               
               Cow position:chr17:25181423-25180982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 35

               
               
               Conread position:16-471
               
               
               Cow position:chr17:10271224-10271667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 83

               
               
               Conread position:16-471
               
               
               Cow position:chr17:41892332-41891887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 56

               
               
               Conread position:16-473
               
               
               Cow position:chr17:923603-924059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):199, 172

               
               
               Conread position:16-473
               
               
               Cow position:chr17:8926505-8926039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 218

               
               
               Conread position:16-486
               
               
               Cow position:chr17:20653178-20652719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:316
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):35, 120

               
               
               Conread position:16-505
               
               
               Cow position:chr17:18860995-18860515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:498
               
               
               Alignm identity:359
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 49

               
               
               Conread position:16-507
               
               
               Cow position:chr17:18720721-18720221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:514
               
               
               Alignm identity:351
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 35

               
               
               Conread position:16-507
               
               
               Cow position:chr17:33271950-33271439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:530
               
               
               Alignm identity:357
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):93, 41

               
               
               Conread position:16-508
               
               
               Cow position:chr17:2034273-2034731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:496
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 42

               
               
               Conread position:16-508
               
               
               Cow position:chr17:20233950-20234428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:504
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 149

               
               
               Conread position:16-508
               
               
               Cow position:chr17:22563919-22564410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:351
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 45

               
               
               Conread position:16-508
               
               
               Cow position:chr17:22775115-22775602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:336
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):210, 48

               
               
               Conread position:16-508
               
               
               Cow position:chr17:24973673-24974175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:519
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 213

               
               
               Conread position:16-508
               
               
               Cow position:chr17:30539526-30539067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:499
               
               
               Alignm identity:352
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 139

               
               
               Conread position:16-508
               
               
               Cow position:chr17:32457857-32457358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 303

               
               
               Conread position:16-508
               
               
               Cow position:chr17:33934023-33933516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:521
               
               
               Alignm identity:353
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 161

               
               
               Conread position:17-350
               
               
               Cow position:chr17:40892878-40893206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:230
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):73, 44

               
               
               Conread position:17-399
               
               
               Cow position:chr17:1568445-1568070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:249
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):87, 29

               
               
               Conread position:17-399
               
               
               Cow position:chr17:16854335-16853950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:249
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):100, 276

               
               
               Conread position:17-413
               
               
               Cow position:chr17:33288930-33288538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 203

               
               
               Conread position:17-421
               
               
               Cow position:chr17:20082055-20081672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 149

               
               
               Conread position:17-434
               
               
               Cow position:chr17:39412774-39412366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:273
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):82, 49

               
               
               Conread position:17-440
               
               
               Cow position:chr17:40421393-40421817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 177

               
               
               Conread position:17-447
               
               
               Cow position:chr17:32138673-32138271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:295
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):92, 44

               
               
               Conread position:17-448
               
               
               Cow position:chr17:27795372-27795807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 122

               
               
               Conread position:17-482
               
               
               Cow position:chr17:19891341-19891811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 15

               
               
               Conread position:17-505
               
               
               Cow position:chr17:25815332-25815824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:505
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 139

               
               
               Conread position:17-508
               
               
               Cow position:chr17:23803190-23803668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:499
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 115

               
               
               Conread position:17-508
               
               
               Cow position:chr17:29292642-29292158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:351
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 37

               
               
               Conread position:18-309
               
               
               Cow position:chr17:18494788-18494499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 55

               
               
               Conread position:18-432
               
               
               Cow position:chr17:20093399-20092991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:277
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):292, 87

               
               
               Conread position:18-434
               
               
               Cow position:chr17:9117368-9117784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 207

               
               
               Conread position:18-434
               
               
               Cow position:chr17:24883838-24883431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 10

               
               
               Conread position:18-448
               
               
               Cow position:chr17:14026190-14025756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 113

               
               
               Conread position:18-449
               
               
               Cow position:chr17:5350391-5349969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:285
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):96, 61

               
               
               Conread position:18-452
               
               
               Cow position:chr17:43717583-43717178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 78

               
               
               Conread position:20-363
               
               
               Cow position:chr17:3471142-3471487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 145

               
               
               Conread position:21-448
               
               
               Cow position:chr17:20126349-20126750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):143, 82

               
               
               Conread position:21-452
               
               
               Cow position:chr17:15103152-15102736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:300
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):88, 33

               
               
               Conread position:21-475
               
               
               Cow position:chr17:18592166-18592622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 206

               
               
               Conread position:24-397
               
               
               Cow position:chr17:29080296-29080645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:245
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):12, 21

               
               
               Conread position:25-508
               
               
               Cow position:chr17:11296369-11296871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 30

               
               
               Conread position:25-508
               
               
               Cow position:chr17:26818719-26818240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:496
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 7

               
               
               Conread position:27-449
               
               
               Cow position:chr17:8079051-8079467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 103

               
               
               Conread position:27-469
               
               
               Cow position:chr17:31481305-31480866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:303
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):84, 34

               
               
               Conread position:30-336
               
               
               Cow position:chr17:42347484-42347184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 144

               
               
               Conread position:31-463
               
               
               Cow position:chr17:20848272-20848691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 21

               
               
               Conread position:32-449
               
               
               Cow position:chr17:21115206-21114799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:283
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):77, 35

               
               
               Conread position:34-463
               
               
               Cow position:chr17:3042223-3042640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:284
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):75, 20

               
               
               Conread position:37-508
               
               
               Cow position:chr17:6996023-6996491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:316
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):60, 115

               
               
               Conread position:39-426
               
               
               Cow position:chr17:21628234-21628609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 29

               
               
               Conread position:41-506
               
               
               Cow position:chr17:144425-143969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 16

               
               
               Conread position:44-507
               
               
               Cow position:chr17:11102043-11101587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 130

               
               
               Conread position:46-432
               
               
               Cow position:chr17:29363608-29363223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:262
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):63, 17

               
               
               Conread position:46-452
               
               
               Cow position:chr17:18495754-18495362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 27

               
               
               Conread position:47-310
               
               
               Cow position:chr17:13672320-13672052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):54, 7

               
               
               Conread position:47-430
               
               
               Cow position:chr17:553210-552834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:272
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):102, 42

               
               
               Conread position:47-432
               
               
               Cow position:chr17:16371004-16371393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 251

               
               
               Conread position:47-448
               
               
               Cow position:chr17:20780264-20780669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 145

               
               
               Conread position:47-505
               
               
               Cow position:chr17:5380719-5381161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 91

               
               
               Conread position:48-277
               
               
               Cow position:chr17:24876893-24877128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:162
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:49-449
               
               
               Cow position:chr17:17060929-17060528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:263
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):56, 165

               
               
               Conread position:50-438
               
               
               Cow position:chr17:20839800-20839423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):298, 9

               
               
               Conread position:52-449
               
               
               Cow position:chr17:11664829-11664427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 58

               
               
               Conread position:53-432
               
               
               Cow position:chr17:44147212-44146837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:247
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):121, 78

               
               
               Conread position:54-357
               
               
               Cow position:chr17:1526592-1526289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 54

               
               
               Conread position:54-449
               
               
               Cow position:chr17:21004070-21003675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:269
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):55, 170

               
               
               Conread position:57-448
               
               
               Cow position:chr17:15300106-15299727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:262
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):52, 131

               
               
               Conread position:58-427
               
               
               Cow position:chr17:30665039-30665405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 29

               
               
               Conread position:58-434
               
               
               Cow position:chr17:14848757-14848406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 15

               
               
               Conread position:60-508
               
               
               Cow position:chr17:33999277-33998848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 162

               
               
               Conread position:63-451
               
               
               Cow position:chr17:21755669-21755277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:270
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):46, 16

               
               
               Conread position:64-356
               
               
               Cow position:chr17:33926350-33926064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):104, 45

               
               
               Conread position:65-408
               
               
               Cow position:chr17:39771168-39771513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:231
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):52, 160

               
               
               Conread position:65-500
               
               
               Cow position:chr17:39012490-39012923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 174

               
               
               Conread position:66-430
               
               
               Cow position:chr17:7132684-7132304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 369

               
               
               Conread position:66-449
               
               
               Cow position:chr17:17410071-17410448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 52

               
               
               Conread position:66-451
               
               
               Cow position:chr17:9697928-9697525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:268
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):42, 65

               
               
               Conread position:66-451
               
               
               Cow position:chr17:15684278-15684667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 128

               
               
               Conread position:66-503
               
               
               Cow position:chr17:5423298-5422851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 66

               
               
               Conread position:66-506
               
               
               Cow position:chr17:37415127-37414692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 160

               
               
               Conread position:66-508
               
               
               Cow position:chr17:6423534-6423986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 155

               
               
               Conread position:66-508
               
               
               Cow position:chr17:27819075-27819504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 21

               
               
               Conread position:67-411
               
               
               Cow position:chr17:28539810-28540145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 81

               
               
               Conread position:67-448
               
               
               Cow position:chr17:23245987-23246352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:261
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):103, 12

               
               
               Conread position:70-436
               
               
               Cow position:chr17:37482311-37481929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:269
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):29, 245

               
               
               Conread position:70-448
               
               
               Cow position:chr17:22806757-22806389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:266
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):104, 19

               
               
               Conread position:70-448
               
               
               Cow position:chr17:36275134-36275487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:259
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):39, 85

               
               
               Conread position:71-286
               
               
               Cow position:chr17:36817720-36817936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):38, 70

               
               
               Conread position:71-302
               
               
               Cow position:chr17:4824279-4824506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:169
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):99, 33

               
               
               Conread position:71-310
               
               
               Cow position:chr17:5745465-5745235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):28, 100

               
               
               Conread position:71-346
               
               
               Cow position:chr17:5246678-5246944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:71-367
               
               
               Cow position:chr17:9778029-9778315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:218
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):38, 85

               
               
               Conread position:71-402
               
               
               Cow position:chr17:13989396-13989065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:234
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):38, 154

               
               
               Conread position:71-448
               
               
               Cow position:chr17:9746299-9746666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 39

               
               
               Conread position:71-448
               
               
               Cow position:chr17:11832358-11831961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 39

               
               
               Conread position:71-452
               
               
               Cow position:chr17:36790926-36791284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:256
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):328, 34

               
               
               Conread position:71-506
               
               
               Cow position:chr17:20215950-20216378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 96

               
               
               Conread position:74-290
               
               
               Cow position:chr17:21419213-21419435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:74-339
               
               
               Cow position:chr17:9293529-9293798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:177
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):29, 151

               
               
               Conread position:75-449
               
               
               Cow position:chr17:20932118-20932486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):273, 34

               
               
               Conread position:75-503
               
               
               Cow position:chr17:24580517-24580087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 150

               
               
               Conread position:77-279
               
               
               Cow position:chr17:10220265-10220463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):33, 147

               
               
               Conread position:77-334
               
               
               Cow position:chr17:4473019-4472777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):34, 41

               
               
               Conread position:77-364
               
               
               Cow position:chr17:18245859-18246150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:207
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):32, 147

               
               
               Conread position:77-447
               
               
               Cow position:chr17:25097247-25097607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 145

               
               
               Conread position:77-449
               
               
               Cow position:chr17:12220154-12219784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:256
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):40, 149

               
               
               Conread position:77-449
               
               
               Cow position:chr17:21739100-21738719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 236

               
               
               Conread position:77-449
               
               
               Cow position:chr17:25128565-25128198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:254
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):32, 57

               
               
               Conread position:77-452
               
               
               Cow position:chr17:8837157-8836795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:257
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):216, 32

               
               
               Conread position:77-508
               
               
               Cow position:chr17:8279923-8279502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):166, 144

               
               
               Conread position:78-449
               
               
               Cow position:chr17:27047948-27048310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 56

               
               
               Conread position:79-442
               
               
               Cow position:chr17:23205821-23206166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:251
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):36, 129

               
               
               Conread position:80-397
               
               
               Cow position:chr17:1020780-1020459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):29, 47

               
               
               Conread position:81-463
               
               
               Cow position:chr17:40741435-40741820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 109

               
               
               Conread position:81-506
               
               
               Cow position:chr17:30236016-30236401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:287
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):104, 32

               
               
               Conread position:83-343
               
               
               Cow position:chr17:966949-966699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):26, 199

               
               
               Conread position:84-413
               
               
               Cow position:chr17:38646859-38647180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):265, 24

               
               
               Conread position:84-448
               
               
               Cow position:chr17:32279116-32278753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:259
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):25, 140

               
               
               Conread position:89-338
               
               
               Cow position:chr17:15067827-15067583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:183
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):165, 22

               
               
               Conread position:89-368
               
               
               Cow position:chr17:44232924-44232639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:198
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):25, 224

               
               
               Conread position:89-508
               
               
               Cow position:chr17:27429374-27429788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:300
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):20, 136

               
               
               Conread position:90-372
               
               
               Cow position:chr17:12447601-12447324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:204
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):19, 33

               
               
               Conread position:92-449
               
               
               Cow position:chr17:12108603-12108960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:249
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):22, 17

               
               
               Conread position:94-302
               
               
               Cow position:chr17:21697534-21697747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:94-343
               
               
               Cow position:chr17:35311222-35311474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:182
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):15, 207

               
               
               Conread position:95-365
               
               
               Cow position:chr17:32950074-32950345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:189
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):14, 29

               
               
               Conread position:95-505
               
               
               Cow position:chr17:5514561-5514986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:288
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):19, 37

               
               
               Conread position:96-346
               
               
               Cow position:chr17:2839693-2839959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):13, 144

               
               
               Conread position:96-397
               
               
               Cow position:chr17:24490324-24490643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:219
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):13, 242

               
               
               Conread position:96-452
               
               
               Cow position:chr17:9911566-9911915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 127

               
               
               Conread position:98-355
               
               
               Cow position:chr17:26881531-26881271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:179
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):9, 127

               
               
               Conread position:98-365
               
               
               Cow position:chr17:43323949-43323695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):185, 12

               
               
               Conread position:98-389
               
               
               Cow position:chr17:7648025-7648306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:204
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):11, 90

               
               
               Conread position:98-412
               
               
               Cow position:chr17:18824596-18824904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:225
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):9, 123

               
               
               Conread position:98-502
               
               
               Cow position:chr17:29898455-29898826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:273
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):297, 74

               
               
               Conread position:98-508
               
               
               Cow position:chr17:23147237-23147631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 10

               
               
               Conread position:105-449
               
               
               Cow position:chr17:1035787-1035442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 200

               
               
               Conread position:110-449
               
               
               Cow position:chr17:25032653-25032327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:233
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):63, 105

               
               
               Conread position:110-449
               
               
               Cow position:chr17:36203671-36203331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:236
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):114, 80

               
               
               Conread position:110-503
               
               
               Cow position:chr17:12536649-12536247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):239, 109

               
               
               Conread position:110-508
               
               
               Cow position:chr17:3577357-3577759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:258
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):64, 112

               
               
               Conread position:114-300
               
               
               Cow position:chr17:35990919-35991106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):31, 109

               
               
               Conread position:114-432
               
               
               Cow position:chr17:25999939-26000254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):66, 106

               
               
               Conread position:114-448
               
               
               Cow position:chr17:32273861-32273533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:232
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):219, 47

               
               
               Conread position:114-508
               
               
               Cow position:chr17:38363148-38362781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:279
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):229, 14

               
               
               Conread position:116-450
               
               
               Cow position:chr17:10459111-10458777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):229, 52

               
               
               Conread position:119-469
               
               
               Cow position:chr17:1634654-1634319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:239
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):229, 18

               
               
               Conread position:122-469
               
               
               Cow position:chr17:6848635-6848970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:252
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):29, 39

               
               
               Conread position:123-365
               
               
               Cow position:chr17:10491357-10491596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):51, 6

               
               
               Conread position:124-440
               
               
               Cow position:chr17:12306563-12306251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:214
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):50, 122

               
               
               Conread position:125-506
               
               
               Cow position:chr17:36217346-36216975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:260
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):65, 36

               
               
               Conread position:125-508
               
               
               Cow position:chr17:17683064-17682682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:275
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):144, 46

               
               
               Conread position:127-399
               
               
               Cow position:chr17:37778781-37778515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:195
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):64, 45

               
               
               Conread position:127-448
               
               
               Cow position:chr17:4106150-4105840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:212
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):222, 92

               
               
               Conread position:127-448
               
               
               Cow position:chr17:4121886-4121576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):222, 92

               
               
               Conread position:128-422
               
               
               Cow position:chr17:28359680-28359969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:203
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):39, 94

               
               
               Conread position:129-434
               
               
               Cow position:chr17:27058715-27058417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:217
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):219, 71

               
               
               Conread position:129-508
               
               
               Cow position:chr17:7142702-7143089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 143

               
               
               Conread position:130-323
               
               
               Cow position:chr17:38613085-38613282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):88, 96

               
               
               Conread position:130-415
               
               
               Cow position:chr17:14762280-14762001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:200
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):218, 100

               
               
               Conread position:131-448
               
               
               Cow position:chr17:28467976-28468276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:223
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):218, 89

               
               
               Conread position:134-426
               
               
               Cow position:chr17:18146025-18146317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:201
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):53, 159

               
               
               Conread position:141-508
               
               
               Cow position:chr17:5144317-5143940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 157

               
               
               Conread position:146-388
               
               
               Cow position:chr17:10020939-10020698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):79, 15

               
               
               Conread position:146-449
               
               
               Cow position:chr17:25916752-25917050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:211
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):134, 15

               
               
               Conread position:153-423
               
               
               Cow position:chr17:21812287-21812023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:190
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):21, 71

               
               
               Conread position:155-502
               
               
               Cow position:chr17:35212230-35212563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:244
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):88, 75

               
               
               Conread position:157-399
               
               
               Cow position:chr17:24928345-24928579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:170
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):69, 30

               
               
               Conread position:157-448
               
               
               Cow position:chr17:32280531-32280819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):28, 65

               
               
               Conread position:158-346
               
               
               Cow position:chr17:11921415-11921224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):144, 0

               
               
               Conread position:158-420
               
               
               Cow position:chr17:14060909-14060647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):70, 62

               
               
               Conread position:160-508
               
               
               Cow position:chr17:24880613-24880953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 83

               
               
               Conread position:161-397
               
               
               Cow position:chr17:1113755-1113990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):54, 135

               
               
               Conread position:161-447
               
               
               Cow position:chr17:6328982-6329268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:206
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):61, 131

               
               
               Conread position:161-460
               
               
               Cow position:chr17:11962679-11962369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:216
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):68, 59

               
               
               Conread position:161-508
               
               
               Cow position:chr17:7614508-7614164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:243
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):183, 59

               
               
               Conread position:165-449
               
               
               Cow position:chr17:20884397-20884678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:206
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):183, 55

               
               
               Conread position:165-449
               
               
               Cow position:chr17:39857267-39857540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:201
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):183, 106

               
               
               Conread position:172-448
               
               
               Cow position:chr17:25594822-25594537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):50, 27

               
               
               Conread position:172-508
               
               
               Cow position:chr17:26162545-26162213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 30

               
               
               Conread position:173-425
               
               
               Cow position:chr17:31856545-31856804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:191
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):46, 145

               
               
               Conread position:173-487
               
               
               Cow position:chr17:4085646-4085947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:222
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):19, 45

               
               
               Conread position:174-447
               
               
               Cow position:chr17:20874273-20874549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:201
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):43, 133

               
               
               Conread position:174-480
               
               
               Cow position:chr17:21373563-21373859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:212
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):162, 46

               
               
               Conread position:175-399
               
               
               Cow position:chr17:7654568-7654348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:174
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):134, 13

               
               
               Conread position:176-402
               
               
               Cow position:chr17:4786609-4786390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):172, 26

               
               
               Conread position:176-426
               
               
               Cow position:chr17:24559178-24559422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):172, 115

               
               
               Conread position:176-434
               
               
               Cow position:chr17:25501995-25502250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:181
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):169, 43

               
               
               Conread position:176-505
               
               
               Cow position:chr17:33904034-33903714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:232
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):8, 21

               
               
               Conread position:177-303
               
               
               Cow position:chr17:12768894-12768769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:101
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:178-448
               
               
               Cow position:chr17:10561517-10561788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:199
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):128, 42

               
               
               Conread position:178-448
               
               
               Cow position:chr17:11215342-11215078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:199
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):162, 44

               
               
               Conread position:183-449
               
               
               Cow position:chr17:21325224-21325487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):8, 37

               
               
               Conread position:183-449
               
               
               Cow position:chr17:40851875-40852127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):214, 36

               
               
               Conread position:184-441
               
               
               Cow position:chr17:27203151-27202899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):164, 112

               
               
               Conread position:186-449
               
               
               Cow position:chr17:7803279-7803020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:181
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):37, 45

               
               
               Conread position:188-446
               
               
               Cow position:chr17:34751508-34751254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:193
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):157, 32

               
               
               Conread position:191-373
               
               
               Cow position:chr17:17266994-17266813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):157, 105

               
               
               Conread position:191-447
               
               
               Cow position:chr17:10432076-10431821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:186
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):152, 29

               
               
               Conread position:191-506
               
               
               Cow position:chr17:3353781-3354099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:224
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):134, 112

               
               
               Conread position:192-432
               
               
               Cow position:chr17:14652879-14652643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):156, 33

               
               
               Conread position:192-451
               
               
               Cow position:chr17:15340851-15340595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:184
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):157, 27

               
               
               Conread position:193-457
               
               
               Cow position:chr17:25514221-25513959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):152, 26

               
               
               Conread position:193-508
               
               
               Cow position:chr17:11344119-11344418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:223
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:196-508
               
               
               Cow position:chr17:5787929-5787624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):149, 31

               
               
               Conread position:198-448
               
               
               Cow position:chr17:12880504-12880748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:167
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):150, 34

               
               
               Conread position:199-448
               
               
               Cow position:chr17:21489716-21489471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:189
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):197, 110

               
               
               Conread position:200-426
               
               
               Cow position:chr17:9056794-9056566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):17, 100

               
               
               Conread position:201-424
               
               
               Cow position:chr17:23798189-23798411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):147, 19

               
               
               Conread position:203-432
               
               
               Cow position:chr17:25342828-25342604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:160
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):145, 89

               
               
               Conread position:203-448
               
               
               Cow position:chr17:2275386-2275624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):76, 94

               
               
               Conread position:205-499
               
               
               Cow position:chr17:27257318-27257014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:211
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):38, 15

               
               
               Conread position:209-446
               
               
               Cow position:chr17:38263568-38263338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:182
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):140, 10

               
               
               Conread position:212-449
               
               
               Cow position:chr17:1466509-1466262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):136, 82

               
               
               Conread position:213-449
               
               
               Cow position:chr17:20335586-20335804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:171
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):8, 17

               
               
               Conread position:213-507
               
               
               Cow position:chr17:1469299-1469597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:217
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):135, 12

               
               
               Conread position:214-508
               
               
               Cow position:chr17:36400018-36400310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):31, 120

               
               
               Conread position:215-435
               
               
               Cow position:chr17:11368927-11368709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):134, 27

               
               
               Conread position:216-450
               
               
               Cow position:chr17:23280935-23280699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):26, 92

               
               
               Conread position:220-449
               
               
               Cow position:chr17:22127846-22128077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):14, 75

               
               
               Conread position:220-508
               
               
               Cow position:chr17:16616748-16617032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):128, 7

               
               
               Conread position:224-439
               
               
               Cow position:chr17:8293849-8293636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):13, 26

               
               
               Conread position:224-448
               
               
               Cow position:chr17:29026000-29026226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):53, 72

               
               
               Conread position:224-449
               
               
               Cow position:chr17:21806517-21806297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):124, 25

               
               
               Conread position:224-477
               
               
               Cow position:chr17:22057090-22056843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:174
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):124, 40

               
               
               Conread position:224-508
               
               
               Cow position:chr17:36864563-36864855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:207
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):125, 47

               
               
               Conread position:227-447
               
               
               Cow position:chr17:9824604-9824822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):122, 74

               
               
               Conread position:227-507
               
               
               Cow position:chr17:4683282-4683566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:186
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):118, 64

               
               
               Conread position:230-508
               
               
               Cow position:chr17:7205350-7205632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 83

               
               
               Conread position:232-434
               
               
               Cow position:chr17:25126292-25126490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):116, 64

               
               
               Conread position:237-434
               
               
               Cow position:chr17:16158436-16158631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):108, 57

               
               
               Conread position:237-449
               
               
               Cow position:chr17:9770456-9770657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:152
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):160, 59

               
               
               Conread position:239-448
               
               
               Cow position:chr17:32333145-32332937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):110, 63

               
               
               Conread position:242-422
               
               
               Cow position:chr17:22245942-22246117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):106, 54

               
               
               Conread position:242-432
               
               
               Cow position:chr17:36814310-36814498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):106, 57

               
               
               Conread position:242-449
               
               
               Cow position:chr17:22051642-22051435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):101, 58

               
               
               Conread position:243-468
               
               
               Cow position:chr17:4891409-4891189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):106, 19

               
               
               Conread position:243-486
               
               
               Cow position:chr17:2270948-2271190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):41, 36

               
               
               Conread position:243-505
               
               
               Cow position:chr17:13716087-13715825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:189
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):79, 60

               
               
               Conread position:244-434
               
               
               Cow position:chr17:7590506-7590323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):104, 10

               
               
               Conread position:244-508
               
               
               Cow position:chr17:40406396-40406655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:179
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):105, 52

               
               
               Conread position:248-399
               
               
               Cow position:chr17:21604370-21604518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):14, 9

               
               
               Conread position:248-449
               
               
               Cow position:chr17:26789376-26789574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):150, 93

               
               
               Conread position:250-434
               
               
               Cow position:chr17:26730651-26730471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:133
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):81, 53

               
               
               Conread position:250-450
               
               
               Cow position:chr17:37816232-37816040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):98, 43

               
               
               Conread position:250-482
               
               
               Cow position:chr17:20810531-20810298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):101, 45

               
               
               Conread position:250-506
               
               
               Cow position:chr17:31465293-31465030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:184
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):40, 47

               
               
               Conread position:250-508
               
               
               Cow position:chr17:10886448-10886199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):147, 54

               
               
               Conread position:251-464
               
               
               Cow position:chr17:13601017-13600811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):146, 41

               
               
               Conread position:253-508
               
               
               Cow position:chr17:28982140-28982409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:188
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):95, 41

               
               
               Conread position:254-450
               
               
               Cow position:chr17:18818530-18818724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):94, 37

               
               
               Conread position:257-449
               
               
               Cow position:chr17:9940648-9940850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:257-449
               
               
               Cow position:chr17:28814534-28814338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:148
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:259-449
               
               
               Cow position:chr17:21922666-21922479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):89, 49

               
               
               Conread position:263-449
               
               
               Cow position:chr17:27303987-27303814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:139
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):85, 36

               
               
               Conread position:264-508
               
               
               Cow position:chr17:11655344-11655591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:172
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):35, 51

               
               
               Conread position:266-404
               
               
               Cow position:chr17:7567420-7567284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:108
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):83, 36

               
               
               Conread position:267-430
               
               
               Cow position:chr17:7577565-7577733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:122
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:268-508
               
               
               Cow position:chr17:12091848-12091601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:177
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):81, 38

               
               
               Conread position:271-427
               
               
               Cow position:chr17:7851066-7851220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):76, 22

               
               
               Conread position:274-449
               
               
               Cow position:chr17:34836152-34836326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):75, 32

               
               
               Conread position:282-508
               
               
               Cow position:chr17:9932312-9932079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):67, 11

               
               
               Conread position:282-508
               
               
               Cow position:chr17:31798461-31798236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:155
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):67, 38

               
               
               Conread position:284-506
               
               
               Cow position:chr17:1328587-1328808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):65, 47

               
               
               Conread position:290-508
               
               
               Cow position:chr17:25169075-25169282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:161
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):59, 12

               
               
               Conread position:293-506
               
               
               Cow position:chr17:13229377-13229588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:154
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):56, 13

               
               
               Conread position:295-508
               
               
               Cow position:chr17:34836109-34835893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):53, 187

               
               
               Conread position:301-487
               
               
               Cow position:chr17:7519395-7519584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:302-449
               
               
               Cow position:chr17:3067852-3067704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:114
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):46, 11

               
               
               Conread position:304-471
               
               
               Cow position:chr17:29039997-29039838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):41, 54

               
               
               Conread position:304-496
               
               
               Cow position:chr17:33913568-33913373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:306-506
               
               
               Cow position:chr17:12288804-12289004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:150
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):12, 135

               
               
               Conread position:307-449
               
               
               Cow position:chr17:5719882-5720026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:107
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:307-449
               
               
               Cow position:chr17:35334105-35334250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:308-448
               
               
               Cow position:chr17:20929253-20929395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:107
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:308-449
               
               
               Cow position:chr17:17034961-17035104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:308-502
               
               
               Cow position:chr17:29245455-29245660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:308-508
               
               
               Cow position:chr17:25930527-25930317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:153
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):40, 108

               
               
               Conread position:309-449
               
               
               Cow position:chr17:26072748-26072606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:106
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:309-508
               
               
               Cow position:chr17:3620072-3619874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):40, 25

               
               
               Conread position:309-508
               
               
               Cow position:chr17:10769498-10769297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:166
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:311-451
               
               
               Cow position:chr17:31990948-31991089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:106
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):37, 108

               
               
               Conread position:311-508
               
               
               Cow position:chr17:14278077-14278276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:147
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:313-505
               
               
               Cow position:chr17:12342464-12342273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:145
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):35, 133

               
               
               Conread position:313-508
               
               
               Cow position:chr17:34870098-34870296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):36, 10

               
               
               Conread position:316-449
               
               
               Cow position:chr17:37430485-37430350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:104
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:330-434
               
               
               Cow position:chr17:10508400-10508294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:87
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:333-508
               
               
               Cow position:chr17:19239842-19239667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):7, 32

               
               
               Conread position:337-508
               
               
               Cow position:chr17:14661496-14661333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):8, 37

               
               
               Conread position:341-505
               
               
               Cow position:chr17:43284691-43284855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:123
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):7, 121

               
               
               Conread position:341-508
               
               
               Cow position:chr17:1525779-1525614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):8, 136

               
               
               Conread position:346-487
               
               
               Cow position:chr17:12768755-12768615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):52, 18

               
               
               Conread position:347-499
               
               
               Cow position:chr17:5041354-5041202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:115
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):50, 33

               
               
               Conread position:347-508
               
               
               Cow position:chr17:7163843-7163680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:347-508
               
               
               Cow position:chr17:33925966-33925804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:357-508
               
               
               Cow position:chr17:9927420-9927571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:116
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:363-508
               
               
               Cow position:chr17:25338234-25338376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:109
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):40, 83

               
               
               Conread position:10-408
               
               
               Cow position:chr18:49200291-49200673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:270
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):99, 54

               
               
               Conread position:10-434
               
               
               Cow position:chr18:55396961-55397365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:299
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):205, 50

               
               
               Conread position:11-382
               
               
               Cow position:chr18:36912055-36911672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:273
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):88, 223

               
               
               Conread position:12-508
               
               
               Cow position:chr18:4039823-4040308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:505
               
               
               Alignm identity:313
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):52, 120

               
               
               Conread position:15-373
               
               
               Cow position:chr18:35636698-35636342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:249
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):99, 46

               
               
               Conread position:15-403
               
               
               Cow position:chr18:55462060-55461671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 130

               
               
               Conread position:15-434
               
               
               Cow position:chr18:55505053-55505470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 46

               
               
               Conread position:15-449
               
               
               Cow position:chr18:3158951-3158514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 50

               
               
               Conread position:15-449
               
               
               Cow position:chr18:5190030-5189612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:306
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):206, 124

               
               
               Conread position:15-451
               
               
               Cow position:chr18:4672976-4673387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 94

               
               
               Conread position:15-508
               
               
               Cow position:chr18:20174481-20173979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:354
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 172

               
               
               Conread position:16-288
               
               
               Cow position:chr18:39709540-39709812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:199
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):93, 212

               
               
               Conread position:16-293
               
               
               Cow position:chr18:35057994-35058267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):95, 51

               
               
               Conread position:16-297
               
               
               Cow position:chr18:26286563-26286842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:198
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):33, 40

               
               
               Conread position:16-306
               
               
               Cow position:chr18:26572987-26572692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:190
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):104, 36

               
               
               Conread position:16-310
               
               
               Cow position:chr18:51601670-51601370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:189
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:16-311
               
               
               Cow position:chr18:11271008-11270708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):83, 94

               
               
               Conread position:16-336
               
               
               Cow position:chr18:5570808-5571137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:229
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):52, 80

               
               
               Conread position:16-340
               
               
               Cow position:chr18:4315949-4316282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:236
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):61, 153

               
               
               Conread position:16-343
               
               
               Cow position:chr18:35076037-35076366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 144

               
               
               Conread position:16-343
               
               
               Cow position:chr18:49161806-49161463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 301

               
               
               Conread position:16-346
               
               
               Cow position:chr18:47314648-47314304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:235
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:16-349
               
               
               Cow position:chr18:16045350-16045019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):86, 170

               
               
               Conread position:16-356
               
               
               Cow position:chr18:56151005-56150656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 8

               
               
               Conread position:16-359
               
               
               Cow position:chr18:24022041-24022378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:252
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):63, 29

               
               
               Conread position:16-359
               
               
               Cow position:chr18:33606280-33606621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 157

               
               
               Conread position:16-362
               
               
               Cow position:chr18:10861766-10861436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:248
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):93, 45

               
               
               Conread position:16-364
               
               
               Cow position:chr18:26937377-26937711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:245
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):48, 144

               
               
               Conread position:16-367
               
               
               Cow position:chr18:19356520-19356872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:233
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):101, 118

               
               
               Conread position:16-369
               
               
               Cow position:chr18:16418043-16417706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:254
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):95, 45

               
               
               Conread position:16-369
               
               
               Cow position:chr18:32121411-32121067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:251
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):45, 74

               
               
               Conread position:16-373
               
               
               Cow position:chr18:19320628-19320985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:225
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):93, 269

               
               
               Conread position:16-373
               
               
               Cow position:chr18:43473574-43473932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:228
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):83, 143

               
               
               Conread position:16-373
               
               
               Cow position:chr18:50114291-50113929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:232
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):59, 280

               
               
               Conread position:16-375
               
               
               Cow position:chr18:7486902-7487256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 210

               
               
               Conread position:16-386
               
               
               Cow position:chr18:2774937-2774584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:240
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):332, 87

               
               
               Conread position:16-393
               
               
               Cow position:chr18:22874523-22874891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:264
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):93, 108

               
               
               Conread position:16-395
               
               
               Cow position:chr18:7947025-7947416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:263
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):95, 292

               
               
               Conread position:16-397
               
               
               Cow position:chr18:55552615-55552995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 283

               
               
               Conread position:16-399
               
               
               Cow position:chr18:54574663-54574289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 27

               
               
               Conread position:16-422
               
               
               Cow position:chr18:40758866-40759261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 191

               
               
               Conread position:16-423
               
               
               Cow position:chr18:51443778-51443384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 44

               
               
               Conread position:16-434
               
               
               Cow position:chr18:28101276-28101698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 210

               
               
               Conread position:16-440
               
               
               Cow position:chr18:21682318-21681901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):152, 64

               
               
               Conread position:16-447
               
               
               Cow position:chr18:11867003-11867419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):332, 48

               
               
               Conread position:16-448
               
               
               Cow position:chr18:35797271-35797699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 209

               
               
               Conread position:16-448
               
               
               Cow position:chr18:42747237-42747668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 134

               
               
               Conread position:16-449
               
               
               Cow position:chr18:11322239-11322677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 252

               
               
               Conread position:16-449
               
               
               Cow position:chr18:11377021-11377445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 34

               
               
               Conread position:16-449
               
               
               Cow position:chr18:21195689-21195254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 206

               
               
               Conread position:16-449
               
               
               Cow position:chr18:28658258-28657830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 21

               
               
               Conread position:16-449
               
               
               Cow position:chr18:43284101-43283676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):332, 45

               
               
               Conread position:16-449
               
               
               Cow position:chr18:45104796-45104357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 209

               
               
               Conread position:16-449
               
               
               Cow position:chr18:51691818-51691381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 244

               
               
               Conread position:16-450
               
               
               Cow position:chr18:7955798-7956230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):155, 89

               
               
               Conread position:16-457
               
               
               Cow position:chr18:22121230-22120796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 57

               
               
               Conread position:16-463
               
               
               Cow position:chr18:25003227-25002795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 161

               
               
               Conread position:16-469
               
               
               Cow position:chr18:7359387-7359847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 60

               
               
               Conread position:16-489
               
               
               Cow position:chr18:33793354-33793816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:327
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):61, 141

               
               
               Conread position:16-503
               
               
               Cow position:chr18:19645828-19646310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:498
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 45

               
               
               Conread position:16-503
               
               
               Cow position:chr18:29356987-29356479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:514
               
               
               Alignm identity:351
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 24

               
               
               Conread position:16-504
               
               
               Cow position:chr18:19850094-19849617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:494
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):380, 49

               
               
               Conread position:16-506
               
               
               Cow position:chr18:10656097-10656578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:497
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 32

               
               
               Conread position:16-506
               
               
               Cow position:chr18:14586826-14586323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:514
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 287

               
               
               Conread position:16-506
               
               
               Cow position:chr18:33299554-33300041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:502
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 38

               
               
               Conread position:16-507
               
               
               Cow position:chr18:16842416-16841913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:505
               
               
               Alignm identity:355
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 289

               
               
               Conread position:16-508
               
               
               Cow position:chr18:3166826-3166352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:504
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 48

               
               
               Conread position:16-508
               
               
               Cow position:chr18:20125956-20126450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:504
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):158, 45

               
               
               Conread position:16-508
               
               
               Cow position:chr18:29796783-29796290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:371
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 167

               
               
               Conread position:17-292
               
               
               Cow position:chr18:9818491-9818765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):79, 44

               
               
               Conread position:17-368
               
               
               Cow position:chr18:42966489-42966866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:264
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):97, 312

               
               
               Conread position:17-408
               
               
               Cow position:chr18:28794415-28794032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:259
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):101, 159

               
               
               Conread position:17-434
               
               
               Cow position:chr18:34527456-34527029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:291
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):49, 23

               
               
               Conread position:17-449
               
               
               Cow position:chr18:37023905-37023469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 86

               
               
               Conread position:17-503
               
               
               Cow position:chr18:17004905-17005391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:498
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 28

               
               
               Conread position:17-508
               
               
               Cow position:chr18:19193694-19193214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 44

               
               
               Conread position:17-508
               
               
               Cow position:chr18:31672852-31672360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):97, 72

               
               
               Conread position:18-279
               
               
               Cow position:chr18:215383-215116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:18-363
               
               
               Cow position:chr18:21528057-21528397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:239
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):89, 165

               
               
               Conread position:18-404
               
               
               Cow position:chr18:16227211-16227593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 239

               
               
               Conread position:18-432
               
               
               Cow position:chr18:39662429-39662840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 134

               
               
               Conread position:18-434
               
               
               Cow position:chr18:47511646-47512072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 269

               
               
               Conread position:18-436
               
               
               Cow position:chr18:28768019-28768430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 120

               
               
               Conread position:18-447
               
               
               Cow position:chr18:52635429-52634991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 101

               
               
               Conread position:18-452
               
               
               Cow position:chr18:36458586-36459015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 170

               
               
               Conread position:18-508
               
               
               Cow position:chr18:45961607-45961133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:495
               
               
               Alignm identity:357
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 105

               
               
               Conread position:19-362
               
               
               Cow position:chr18:55046227-55046572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:223
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):98, 292

               
               
               Conread position:20-397
               
               
               Cow position:chr18:24956950-24957326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 282

               
               
               Conread position:20-434
               
               
               Cow position:chr18:56165637-56166047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 206

               
               
               Conread position:20-507
               
               
               Cow position:chr18:51406238-51405760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:351
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 17

               
               
               Conread position:21-434
               
               
               Cow position:chr18:4182532-4182122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 40

               
               
               Conread position:21-451
               
               
               Cow position:chr18:56181800-56181373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 134

               
               
               Conread position:21-508
               
               
               Cow position:chr18:29065719-29065234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:504
               
               
               Alignm identity:323
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):50, 36

               
               
               Conread position:22-448
               
               
               Cow position:chr18:51756754-51757173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 132

               
               
               Conread position:22-449
               
               
               Cow position:chr18:9974669-9974248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 200

               
               
               Conread position:23-302
               
               
               Cow position:chr18:19159307-19159035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:205
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):88, 132

               
               
               Conread position:27-443
               
               
               Cow position:chr18:44802222-44801814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 143

               
               
               Conread position:27-508
               
               
               Cow position:chr18:51298141-51298619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 145

               
               
               Conread position:30-508
               
               
               Cow position:chr18:49100705-49100227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:488
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 37

               
               
               Conread position:35-338
               
               
               Cow position:chr18:52382366-52382672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:228
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):39, 33

               
               
               Conread position:36-290
               
               
               Cow position:chr18:11233101-11233358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:185
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:37-404
               
               
               Cow position:chr18:26535845-26535472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:253
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):74, 112

               
               
               Conread position:37-423
               
               
               Cow position:chr18:51500409-51500020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:266
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):72, 41

               
               
               Conread position:38-411
               
               
               Cow position:chr18:29958474-29958121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:266
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):73, 116

               
               
               Conread position:39-279
               
               
               Cow position:chr18:238671-238429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):60, 127

               
               
               Conread position:41-448
               
               
               Cow position:chr18:19273424-19273016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):132, 32

               
               
               Conread position:47-434
               
               
               Cow position:chr18:4380976-4381359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:255
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):67, 37

               
               
               Conread position:47-499
               
               
               Cow position:chr18:52881185-52881614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:292
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):12, 63

               
               
               Conread position:52-383
               
               
               Cow position:chr18:23652932-23652606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:231
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):16, 172

               
               
               Conread position:53-426
               
               
               Cow position:chr18:26998551-26998943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:271
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):56, 118

               
               
               Conread position:54-290
               
               
               Cow position:chr18:35827726-35827485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:166
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):55, 12

               
               
               Conread position:54-300
               
               
               Cow position:chr18:36445120-36445374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:192
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):55, 158

               
               
               Conread position:56-507
               
               
               Cow position:chr18:26355332-26354884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:307
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):116, 48

               
               
               Conread position:57-300
               
               
               Cow position:chr18:26586974-26586722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:181
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:57-330
               
               
               Cow position:chr18:48036471-48036739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):20, 56

               
               
               Conread position:57-434
               
               
               Cow position:chr18:21103068-21102710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:259
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):52, 78

               
               
               Conread position:58-480
               
               
               Cow position:chr18:38344497-38344916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):116, 7

               
               
               Conread position:60-508
               
               
               Cow position:chr18:51587845-51587408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 41

               
               
               Conread position:65-449
               
               
               Cow position:chr18:18919254-18918879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 88

               
               
               Conread position:65-449
               
               
               Cow position:chr18:56159164-56159542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 60

               
               
               Conread position:66-506
               
               
               Cow position:chr18:50700365-50700822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 161

               
               
               Conread position:66-507
               
               
               Cow position:chr18:29080529-29080950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:288
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):329, 44

               
               
               Conread position:66-508
               
               
               Cow position:chr18:13359764-13360188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 12

               
               
               Conread position:66-508
               
               
               Cow position:chr18:36265083-36264623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:324
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):119, 39

               
               
               Conread position:67-343
               
               
               Cow position:chr18:23808172-23807887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 128

               
               
               Conread position:67-346
               
               
               Cow position:chr18:11166680-11166957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:200
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):42, 240

               
               
               Conread position:67-408
               
               
               Cow position:chr18:4515728-4516069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 155

               
               
               Conread position:67-449
               
               
               Cow position:chr18:39875557-39875179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 13

               
               
               Conread position:68-297
               
               
               Cow position:chr18:49655417-49655632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:166
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):41, 119

               
               
               Conread position:70-312
               
               
               Cow position:chr18:30673936-30673695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):41, 184

               
               
               Conread position:70-344
               
               
               Cow position:chr18:48290734-48290465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:197
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):39, 175

               
               
               Conread position:70-346
               
               
               Cow position:chr18:52658123-52658388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:198
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):5, 75

               
               
               Conread position:70-448
               
               
               Cow position:chr18:22214190-22214568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 76

               
               
               Conread position:70-499
               
               
               Cow position:chr18:4649031-4648629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:291
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):39, 86

               
               
               Conread position:70-499
               
               
               Cow position:chr18:43114216-43113818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:296
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):39, 104

               
               
               Conread position:70-508
               
               
               Cow position:chr18:10904550-10905005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:304
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):33, 88

               
               
               Conread position:71-343
               
               
               Cow position:chr18:11680425-11680697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):38, 154

               
               
               Conread position:71-369
               
               
               Cow position:chr18:48453399-48453688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:209
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):31, 20

               
               
               Conread position:71-449
               
               
               Cow position:chr18:33157526-33157896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 124

               
               
               Conread position:71-508
               
               
               Cow position:chr18:9806115-9806559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 257

               
               
               Conread position:71-508
               
               
               Cow position:chr18:51272035-51271605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 104

               
               
               Conread position:72-439
               
               
               Cow position:chr18:21175886-21176258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 156

               
               
               Conread position:72-508
               
               
               Cow position:chr18:50381963-50382408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 149

               
               
               Conread position:73-309
               
               
               Cow position:chr18:17334710-17334469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:175
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):12, 235

               
               
               Conread position:73-435
               
               
               Cow position:chr18:51211889-51212250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:256
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):38, 152

               
               
               Conread position:75-449
               
               
               Cow position:chr18:20271311-20270933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:258
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):34, 139

               
               
               Conread position:75-452
               
               
               Cow position:chr18:55498775-55499155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 35

               
               
               Conread position:75-506
               
               
               Cow position:chr18:51537953-51537550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:292
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):32, 91

               
               
               Conread position:77-343
               
               
               Cow position:chr18:16847409-16847668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):37, 70

               
               
               Conread position:77-359
               
               
               Cow position:chr18:54658012-54658302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:208
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):25, 67

               
               
               Conread position:77-369
               
               
               Cow position:chr18:268100-267815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):29, 76

               
               
               Conread position:77-399
               
               
               Cow position:chr18:31725173-31724859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:228
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):97, 31

               
               
               Conread position:77-435
               
               
               Cow position:chr18:23476959-23476620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):138, 31

               
               
               Conread position:77-447
               
               
               Cow position:chr18:42479869-42479507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:244
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):273, 27

               
               
               Conread position:77-449
               
               
               Cow position:chr18:5995183-5995549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:257
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):32, 52

               
               
               Conread position:77-508
               
               
               Cow position:chr18:249092-248675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 120

               
               
               Conread position:77-508
               
               
               Cow position:chr18:39503974-39503561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:291
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):32, 152

               
               
               Conread position:78-439
               
               
               Cow position:chr18:43806163-43806522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:241
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):39, 209

               
               
               Conread position:79-379
               
               
               Cow position:chr18:36097914-36098222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:219
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):28, 143

               
               
               Conread position:79-397
               
               
               Cow position:chr18:35537516-35537208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):30, 60

               
               
               Conread position:79-434
               
               
               Cow position:chr18:47517495-47517138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 94

               
               
               Conread position:79-449
               
               
               Cow position:chr18:21192697-21192333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:261
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):30, 85

               
               
               Conread position:79-507
               
               
               Cow position:chr18:31586651-31586237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 115

               
               
               Conread position:79-508
               
               
               Cow position:chr18:26335103-26334666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:292
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):30, 175

               
               
               Conread position:81-447
               
               
               Cow position:chr18:6610143-6609772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 76

               
               
               Conread position:81-502
               
               
               Cow position:chr18:42060791-42061209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 144

               
               
               Conread position:82-508
               
               
               Cow position:chr18:47525122-47525550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:292
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):27, 74

               
               
               Conread position:84-450
               
               
               Cow position:chr18:51656335-51655960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:255
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):25, 227

               
               
               Conread position:84-508
               
               
               Cow position:chr18:20127384-20126968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 135

               
               
               Conread position:87-464
               
               
               Cow position:chr18:1495026-1495399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 136

               
               
               Conread position:89-462
               
               
               Cow position:chr18:32773602-32773972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 43

               
               
               Conread position:89-469
               
               
               Cow position:chr18:34325235-34324854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:259
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):82, 223

               
               
               Conread position:89-499
               
               
               Cow position:chr18:16726369-16726779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 134

               
               
               Conread position:95-364
               
               
               Cow position:chr18:21205095-21205359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:194
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):20, 76

               
               
               Conread position:95-507
               
               
               Cow position:chr18:4668763-4668349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:277
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):16, 78

               
               
               Conread position:96-434
               
               
               Cow position:chr18:46048491-46048818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 113

               
               
               Conread position:98-315
               
               
               Cow position:chr18:39185345-39185557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:156
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):144, 10

               
               
               Conread position:98-334
               
               
               Cow position:chr18:19761430-19761665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):11, 76

               
               
               Conread position:98-397
               
               
               Cow position:chr18:46437020-46436737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:217
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):13, 45

               
               
               Conread position:98-508
               
               
               Cow position:chr18:5711935-5711518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 83

               
               
               Conread position:99-298
               
               
               Cow position:chr18:21768360-21768564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:146
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:99-338
               
               
               Cow position:chr18:1582542-1582302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):10, 29

               
               
               Conread position:101-307
               
               
               Cow position:chr18:28823232-28823025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):13, 25

               
               
               Conread position:104-508
               
               
               Cow position:chr18:48713293-48713700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:276
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):14, 5

               
               
               Conread position:108-434
               
               
               Cow position:chr18:37382354-37382028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:226
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):66, 234

               
               
               Conread position:110-346
               
               
               Cow position:chr18:35582356-35582121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):83, 110

               
               
               Conread position:112-496
               
               
               Cow position:chr18:22411869-22411484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 109

               
               
               Conread position:113-301
               
               
               Cow position:chr18:1405562-1405746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):74, 118

               
               
               Conread position:113-327
               
               
               Cow position:chr18:17670053-17669845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:157
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):58, 109

               
               
               Conread position:113-439
               
               
               Cow position:chr18:23360378-23360699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:220
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):32, 83

               
               
               Conread position:113-449
               
               
               Cow position:chr18:4496139-4495805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:225
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):109, 177

               
               
               Conread position:113-508
               
               
               Cow position:chr18:10322549-10322954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:281
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):75, 59

               
               
               Conread position:115-434
               
               
               Cow position:chr18:25984823-25984510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:232
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):13, 109

               
               
               Conread position:115-508
               
               
               Cow position:chr18:19363683-19364072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):107, 14

               
               
               Conread position:116-449
               
               
               Cow position:chr18:32883053-32883382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:238
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):35, 108

               
               
               Conread position:120-393
               
               
               Cow position:chr18:12809615-12809879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:186
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):228, 67

               
               
               Conread position:125-448
               
               
               Cow position:chr18:247923-247615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:234
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):49, 26

               
               
               Conread position:126-496
               
               
               Cow position:chr18:24856083-24855716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):223, 94

               
               
               Conread position:127-508
               
               
               Cow position:chr18:44493708-44493346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:263
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):106, 40

               
               
               Conread position:129-308
               
               
               Cow position:chr18:14872101-14871925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):164, 40

               
               
               Conread position:130-455
               
               
               Cow position:chr18:3211632-3211965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 170

               
               
               Conread position:132-463
               
               
               Cow position:chr18:43020622-43020310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:236
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):216, 56

               
               
               Conread position:137-493
               
               
               Cow position:chr18:2864226-2863854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:253
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:141-434
               
               
               Cow position:chr18:2619420-2619147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):34, 79

               
               
               Conread position:144-508
               
               
               Cow position:chr18:23715109-23714731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 46

               
               
               Conread position:145-347
               
               
               Cow position:chr18:18868529-18868733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):164, 16

               
               
               Conread position:146-344
               
               
               Cow position:chr18:53962470-53962666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:142
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):163, 15

               
               
               Conread position:146-449
               
               
               Cow position:chr18:48829000-48828694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):27, 19

               
               
               Conread position:146-485
               
               
               Cow position:chr18:52583777-52584099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:248
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):135, 74

               
               
               Conread position:148-404
               
               
               Cow position:chr18:36123317-36123570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:186
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):26, 66

               
               
               Conread position:148-425
               
               
               Cow position:chr18:36184116-36183849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):68, 13

               
               
               Conread position:157-504
               
               
               Cow position:chr18:47812262-47812593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:237
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):65, 39

               
               
               Conread position:159-449
               
               
               Cow position:chr18:7108920-7109209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):25, 145

               
               
               Conread position:161-323
               
               
               Cow position:chr18:18815881-18815714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:123
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):7, 145

               
               
               Conread position:161-448
               
               
               Cow position:chr18:48451849-48452151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):55, 135

               
               
               Conread position:161-449
               
               
               Cow position:chr18:1954793-1954508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):89, 59

               
               
               Conread position:161-507
               
               
               Cow position:chr18:18369566-18369224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):187, 58

               
               
               Conread position:166-508
               
               
               Cow position:chr18:7415227-7414876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:247
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):54, 132

               
               
               Conread position:169-449
               
               
               Cow position:chr18:36746450-36746178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:196
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):80, 62

               
               
               Conread position:172-449
               
               
               Cow position:chr18:19896648-19896370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):168, 130

               
               
               Conread position:172-449
               
               
               Cow position:chr18:39434635-39434905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:201
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):176, 41

               
               
               Conread position:172-449
               
               
               Cow position:chr18:51392834-51392562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:203
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):51, 100

               
               
               Conread position:174-448
               
               
               Cow position:chr18:39623608-39623880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:186
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):44, 66

               
               
               Conread position:174-451
               
               
               Cow position:chr18:30341366-30341101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:204
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):46, 30

               
               
               Conread position:174-469
               
               
               Cow position:chr18:27109487-27109192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):55, 39

               
               
               Conread position:174-508
               
               
               Cow position:chr18:5072601-5072259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):174, 17

               
               
               Conread position:175-425
               
               
               Cow position:chr18:46276498-46276245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:165
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):63, 149

               
               
               Conread position:175-449
               
               
               Cow position:chr18:12273464-12273739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:195
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):49, 5

               
               
               Conread position:176-432
               
               
               Cow position:chr18:16686525-16686271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:177
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):173, 43

               
               
               Conread position:176-499
               
               
               Cow position:chr18:22143724-22143382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:247
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):44, 141

               
               
               Conread position:177-408
               
               
               Cow position:chr18:346689-346458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:163
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):38, 74

               
               
               Conread position:181-449
               
               
               Cow position:chr18:4204107-4203849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:194
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):41, 14

               
               
               Conread position:186-414
               
               
               Cow position:chr18:23487847-23488067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):33, 45

               
               
               Conread position:192-434
               
               
               Cow position:chr18:36201798-36201563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:160
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):205, 27

               
               
               Conread position:192-448
               
               
               Cow position:chr18:50974468-50974213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):31, 80

               
               
               Conread position:192-449
               
               
               Cow position:chr18:51676268-51676010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):23, 40

               
               
               Conread position:192-508
               
               
               Cow position:chr18:5755809-5756118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:213
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):50, 28

               
               
               Conread position:196-451
               
               
               Cow position:chr18:51850728-51850481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:181
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):26, 99

               
               
               Conread position:197-507
               
               
               Cow position:chr18:9154717-9155028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:217
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):143, 23

               
               
               Conread position:198-447
               
               
               Cow position:chr18:43555691-43555445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:185
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):150, 27

               
               
               Conread position:199-448
               
               
               Cow position:chr18:56191136-56190882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):99, 41

               
               
               Conread position:199-476
               
               
               Cow position:chr18:55747518-55747789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:189
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):32, 102

               
               
               Conread position:200-396
               
               
               Cow position:chr18:4952373-4952183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):145, 19

               
               
               Conread position:201-448
               
               
               Cow position:chr18:51515430-51515181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:171
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):138, 18

               
               
               Conread position:202-404
               
               
               Cow position:chr18:10117342-10117537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):146, 19

               
               
               Conread position:202-452
               
               
               Cow position:chr18:4556331-4556086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):26, 96

               
               
               Conread position:206-506
               
               
               Cow position:chr18:51643528-51643213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:229
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):11, 46

               
               
               Conread position:208-432
               
               
               Cow position:chr18:42751772-42751539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:165
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):14, 89

               
               
               Conread position:209-413
               
               
               Cow position:chr18:19687864-19688069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):119, 94

               
               
               Conread position:213-434
               
               
               Cow position:chr18:22056032-22055805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):70, 90

               
               
               Conread position:215-449
               
               
               Cow position:chr18:1571387-1571156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):182, 76

               
               
               Conread position:216-446
               
               
               Cow position:chr18:23162743-23162964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:168
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):181, 86

               
               
               Conread position:220-448
               
               
               Cow position:chr18:4264536-4264314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):176, 74

               
               
               Conread position:220-506
               
               
               Cow position:chr18:29474595-29474894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):129, 82

               
               
               Conread position:222-497
               
               
               Cow position:chr18:21706324-21706055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):7, 55

               
               
               Conread position:224-449
               
               
               Cow position:chr18:10214337-10214109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):69, 90

               
               
               Conread position:224-449
               
               
               Cow position:chr18:16997111-16997335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):14, 37

               
               
               Conread position:224-449
               
               
               Cow position:chr18:48242048-48242273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):138, 81

               
               
               Conread position:225-449
               
               
               Cow position:chr18:5632125-5632349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):123, 71

               
               
               Conread position:229-426
               
               
               Cow position:chr18:22274972-22274783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):119, 67

               
               
               Conread position:232-490
               
               
               Cow position:chr18:32908915-32909169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:177
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):113, 64

               
               
               Conread position:244-448
               
               
               Cow position:chr18:52854929-52855135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:244-461
               
               
               Cow position:chr18:35359849-35360060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:158
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):152, 58

               
               
               Conread position:249-427
               
               
               Cow position:chr18:49659995-49659824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):96, 13

               
               
               Conread position:250-449
               
               
               Cow position:chr18:4871958-4872144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):98, 46

               
               
               Conread position:250-449
               
               
               Cow position:chr18:49038344-49038543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:143
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):99, 48

               
               
               Conread position:250-508
               
               
               Cow position:chr18:2146701-2146434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:186
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):44, 21

               
               
               Conread position:250-508
               
               
               Cow position:chr18:12584959-12584686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:187
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:253-449
               
               
               Cow position:chr18:24759768-24759575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:145
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):95, 46

               
               
               Conread position:258-447
               
               
               Cow position:chr18:53642860-53642671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:140
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):90, 129

               
               
               Conread position:258-507
               
               
               Cow position:chr18:37331634-37331390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):91, 48

               
               
               Conread position:259-450
               
               
               Cow position:chr18:56044450-56044634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):81, 47

               
               
               Conread position:259-460
               
               
               Cow position:chr18:19765074-19765281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:143
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):34, 21

               
               
               Conread position:260-449
               
               
               Cow position:chr18:24508344-24508150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):88, 41

               
               
               Conread position:263-440
               
               
               Cow position:chr18:213642-213465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:124
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):86, 43

               
               
               Conread position:263-473
               
               
               Cow position:chr18:40035888-40036094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:155
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):48, 83

               
               
               Conread position:266-485
               
               
               Cow position:chr18:15689185-15689403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):79, 40

               
               
               Conread position:269-482
               
               
               Cow position:chr18:56301793-56302008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):80, 37

               
               
               Conread position:271-485
               
               
               Cow position:chr18:2438860-2438645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:162
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):78, 54

               
               
               Conread position:271-507
               
               
               Cow position:chr18:5078870-5078630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):77, 25

               
               
               Conread position:273-508
               
               
               Cow position:chr18:1190813-1190582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):76, 23

               
               
               Conread position:275-506
               
               
               Cow position:chr18:38126541-38126312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:162
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):60, 49

               
               
               Conread position:276-449
               
               
               Cow position:chr18:4624237-4624069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):121, 26

               
               
               Conread position:287-489
               
               
               Cow position:chr18:16298024-16298226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:140
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):49, 16

               
               
               Conread position:291-506
               
               
               Cow position:chr18:43711973-43712184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:155
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):58, 6

               
               
               Conread position:292-449
               
               
               Cow position:chr18:52251935-52251776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:118
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):19, 6

               
               
               Conread position:297-448
               
               
               Cow position:chr18:24342770-24342923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):20, 9

               
               
               Conread position:303-446
               
               
               Cow position:chr18:46072396-46072541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:110
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:303-506
               
               
               Cow position:chr18:33843152-33842947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):13, 21

               
               
               Conread position:305-449
               
               
               Cow position:chr18:47548051-47547906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:108
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):44, 116

               
               
               Conread position:307-449
               
               
               Cow position:chr18:19787916-19788061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:109
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:308-452
               
               
               Cow position:chr18:11754071-11754214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:112
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):40, 17

               
               
               Conread position:308-505
               
               
               Cow position:chr18:50359269-50359480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:155
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:308-507
               
               
               Cow position:chr18:47693004-47693211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:308-508
               
               
               Cow position:chr18:24719251-24719467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:156
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:309-508
               
               
               Cow position:chr18:2777814-2777606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:151
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:309-508
               
               
               Cow position:chr18:26458408-26458213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):39, 12

               
               
               Conread position:310-505
               
               
               Cow position:chr18:40047558-40047349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:155
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):22, 15

               
               
               Conread position:311-507
               
               
               Cow position:chr18:26372862-26373059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):7, 13

               
               
               Conread position:312-499
               
               
               Cow position:chr18:26843156-26842967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:319-502
               
               
               Cow position:chr18:21139851-21140036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:320-506
               
               
               Cow position:chr18:6075445-6075252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:146
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:327-449
               
               
               Cow position:chr18:47410500-47410624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:101
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:340-506
               
               
               Cow position:chr18:48036789-48036955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):9, 112

               
               
               Conread position:353-473
               
               
               Cow position:chr18:44408402-44408523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:94
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:354-508
               
               
               Cow position:chr18:28297879-28297725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:118
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):43, 99

               
               
               Conread position:368-508
               
               
               Cow position:chr18:14431815-14431677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:106
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:390-508
               
               
               Cow position:chr18:23807618-23807499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:97
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:10-368
               
               
               Cow position:chr19:8371316-8370961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:233
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):107, 282

               
               
               Conread position:12-471
               
               
               Cow position:chr19:53738005-53738458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):97, 49

               
               
               Conread position:15-364
               
               
               Cow position:chr19:47727898-47727556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):330, 94

               
               
               Conread position:15-397
               
               
               Cow position:chr19:33747523-33747900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:268
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):94, 223

               
               
               Conread position:15-397
               
               
               Cow position:chr19:38842875-38842509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):210, 15

               
               
               Conread position:15-448
               
               
               Cow position:chr19:23304835-23304388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 170

               
               
               Conread position:15-449
               
               
               Cow position:chr19:8375631-8375199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 156

               
               
               Conread position:15-449
               
               
               Cow position:chr19:55957899-55957468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:295
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):161, 55

               
               
               Conread position:15-508
               
               
               Cow position:chr19:12601482-12601982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:519
               
               
               Alignm identity:354
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 71

               
               
               Conread position:16-284
               
               
               Cow position:chr19:1580909-1580640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:195
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):213, 94

               
               
               Conread position:16-291
               
               
               Cow position:chr19:1901330-1901050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):93, 210

               
               
               Conread position:16-294
               
               
               Cow position:chr19:27348590-27348322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:204
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):95, 172

               
               
               Conread position:16-297
               
               
               Cow position:chr19:48409187-48409464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 73

               
               
               Conread position:16-301
               
               
               Cow position:chr19:31378944-31378643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:211
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:16-315
               
               
               Cow position:chr19:51992471-51992167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):101, 250

               
               
               Conread position:16-336
               
               
               Cow position:chr19:42726025-42726348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:233
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):97, 213

               
               
               Conread position:16-343
               
               
               Cow position:chr19:33932472-33932153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 146

               
               
               Conread position:16-345
               
               
               Cow position:chr19:2138431-2138107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 18

               
               
               Conread position:16-346
               
               
               Cow position:chr19:55725025-55724701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:223
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):83, 11

               
               
               Conread position:16-359
               
               
               Cow position:chr19:21092451-21092781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:242
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):95, 138

               
               
               Conread position:16-364
               
               
               Cow position:chr19:1504817-1505146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:243
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):95, 46

               
               
               Conread position:16-364
               
               
               Cow position:chr19:19673090-19673433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 127

               
               
               Conread position:16-367
               
               
               Cow position:chr19:42156578-42156929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:224
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):101, 139

               
               
               Conread position:16-368
               
               
               Cow position:chr19:46918512-46918871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 296

               
               
               Conread position:16-369
               
               
               Cow position:chr19:2260460-2260108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:261
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):43, 196

               
               
               Conread position:16-373
               
               
               Cow position:chr19:14929001-14928630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 298

               
               
               Conread position:16-373
               
               
               Cow position:chr19:52147439-52147082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:234
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):101, 125

               
               
               Conread position:16-395
               
               
               Cow position:chr19:28014152-28014527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 21

               
               
               Conread position:16-395
               
               
               Cow position:chr19:29071048-29070671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 162

               
               
               Conread position:16-395
               
               
               Cow position:chr19:31873778-31874169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 150

               
               
               Conread position:16-395
               
               
               Cow position:chr19:39245571-39245948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 147

               
               
               Conread position:16-396
               
               
               Cow position:chr19:42417538-42417914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:255
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):100, 118

               
               
               Conread position:16-397
               
               
               Cow position:chr19:22778877-22779261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:254
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):93, 32

               
               
               Conread position:16-397
               
               
               Cow position:chr19:35380874-35380502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 25

               
               
               Conread position:16-399
               
               
               Cow position:chr19:4389783-4390159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:242
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):93, 229

               
               
               Conread position:16-399
               
               
               Cow position:chr19:14158615-14158994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:248
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):93, 250

               
               
               Conread position:16-399
               
               
               Cow position:chr19:34905324-34904939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:244
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):105, 276

               
               
               Conread position:16-408
               
               
               Cow position:chr19:23005694-23005295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):97, 290

               
               
               Conread position:16-408
               
               
               Cow position:chr19:25054000-25053602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 11

               
               
               Conread position:16-412
               
               
               Cow position:chr19:7543093-7543480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 137

               
               
               Conread position:16-415
               
               
               Cow position:chr19:34425256-34425648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:281
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):46, 19

               
               
               Conread position:16-422
               
               
               Cow position:chr19:51401339-51400938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 238

               
               
               Conread position:16-426
               
               
               Cow position:chr19:17274045-17273660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 44

               
               
               Conread position:16-432
               
               
               Cow position:chr19:15437780-15438188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 172

               
               
               Conread position:16-434
               
               
               Cow position:chr19:730059-729660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 129

               
               
               Conread position:16-434
               
               
               Cow position:chr19:6515932-6516355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 295

               
               
               Conread position:16-434
               
               
               Cow position:chr19:14592725-14593144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 51

               
               
               Conread position:16-434
               
               
               Cow position:chr19:31594970-31595389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 237

               
               
               Conread position:16-434
               
               
               Cow position:chr19:54942648-54943056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:280
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):100, 22

               
               
               Conread position:16-434
               
               
               Cow position:chr19:56150386-56149975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:277
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):95, 61

               
               
               Conread position:16-440
               
               
               Cow position:chr19:29627695-29627296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 11

               
               
               Conread position:16-440
               
               
               Cow position:chr19:38340300-38339887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):311, 45

               
               
               Conread position:16-447
               
               
               Cow position:chr19:5656439-5656023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 205

               
               
               Conread position:16-447
               
               
               Cow position:chr19:7637551-7637134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 42

               
               
               Conread position:16-447
               
               
               Cow position:chr19:21198798-21199240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 215

               
               
               Conread position:16-448
               
               
               Cow position:chr19:6688334-6687901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 285

               
               
               Conread position:16-448
               
               
               Cow position:chr19:12697998-12698421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 45

               
               
               Conread position:16-449
               
               
               Cow position:chr19:8127988-8128408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):99, 24

               
               
               Conread position:16-449
               
               
               Cow position:chr19:12036832-12036403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 14

               
               
               Conread position:16-449
               
               
               Cow position:chr19:18786653-18786219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 8

               
               
               Conread position:16-449
               
               
               Cow position:chr19:23222315-23222733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 14

               
               
               Conread position:16-451
               
               
               Cow position:chr19:32457314-32457748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 24

               
               
               Conread position:16-499
               
               
               Cow position:chr19:34956026-34955542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:496
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 209

               
               
               Conread position:16-503
               
               
               Cow position:chr19:24688960-24689434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:500
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 8

               
               
               Conread position:16-504
               
               
               Cow position:chr19:29115430-29115905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:344
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):59, 38

               
               
               Conread position:16-505
               
               
               Cow position:chr19:8496629-8496141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:500
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):100, 51

               
               
               Conread position:16-505
               
               
               Cow position:chr19:13267515-13267029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:327
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):87, 158

               
               
               Conread position:16-505
               
               
               Cow position:chr19:36977244-36976753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:497
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 19

               
               
               Conread position:16-506
               
               
               Cow position:chr19:5185582-5185080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:520
               
               
               Alignm identity:345
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):84, 73

               
               
               Conread position:16-506
               
               
               Cow position:chr19:27346976-27346504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:500
               
               
               Alignm identity:322
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):93, 24

               
               
               Conread position:16-507
               
               
               Cow position:chr19:268022-268527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:513
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 114

               
               
               Conread position:16-508
               
               
               Cow position:chr19:2771340-2770856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:501
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 99

               
               
               Conread position:16-508
               
               
               Cow position:chr19:21285427-21284919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:521
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 312

               
               
               Conread position:16-508
               
               
               Cow position:chr19:38907677-38907200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:498
               
               
               Alignm identity:356
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 50

               
               
               Conread position:16-508
               
               
               Cow position:chr19:48478636-48479136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:353
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 219

               
               
               Conread position:17-346
               
               
               Cow position:chr19:38596288-38596616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 10

               
               
               Conread position:17-364
               
               
               Cow position:chr19:10171663-10172022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 13

               
               
               Conread position:17-399
               
               
               Cow position:chr19:4445948-4445569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 171

               
               
               Conread position:17-434
               
               
               Cow position:chr19:47109703-47110129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 105

               
               
               Conread position:17-504
               
               
               Cow position:chr19:36461856-36461371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:494
               
               
               Alignm identity:356
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 217

               
               
               Conread position:18-277
               
               
               Cow position:chr19:42062326-42062065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:18-375
               
               
               Cow position:chr19:4448210-4448571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:249
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):96, 48

               
               
               Conread position:18-397
               
               
               Cow position:chr19:23403977-23403594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:272
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):68, 225

               
               
               Conread position:18-397
               
               
               Cow position:chr19:31825352-31824963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 303

               
               
               Conread position:18-427
               
               
               Cow position:chr19:8033412-8033829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 157

               
               
               Conread position:18-448
               
               
               Cow position:chr19:39623108-39622688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 36

               
               
               Conread position:18-448
               
               
               Cow position:chr19:42205604-42206026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 97

               
               
               Conread position:18-449
               
               
               Cow position:chr19:14253308-14253735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 12

               
               
               Conread position:18-471
               
               
               Cow position:chr19:20661744-20661292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 115

               
               
               Conread position:20-368
               
               
               Cow position:chr19:8839273-8839628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 208

               
               
               Conread position:20-508
               
               
               Cow position:chr19:35539980-35540463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:501
               
               
               Alignm identity:359
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 34

               
               
               Conread position:21-353
               
               
               Cow position:chr19:38392473-38392811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 205

               
               
               Conread position:21-427
               
               
               Cow position:chr19:2734128-2734531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 39

               
               
               Conread position:21-451
               
               
               Cow position:chr19:39751161-39751581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 49

               
               
               Conread position:22-397
               
               
               Cow position:chr19:33912955-33912574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 16

               
               
               Conread position:22-430
               
               
               Cow position:chr19:53657578-53657975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 64

               
               
               Conread position:27-297
               
               
               Cow position:chr19:7189932-7189660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:186
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):90, 53

               
               
               Conread position:27-425
               
               
               Cow position:chr19:24144689-24145096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:281
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):40, 208

               
               
               Conread position:27-425
               
               
               Cow position:chr19:39104324-39103935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:275
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):147, 52

               
               
               Conread position:27-449
               
               
               Cow position:chr19:47773239-47772825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:285
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):48, 86

               
               
               Conread position:27-451
               
               
               Cow position:chr19:27180574-27180146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 37

               
               
               Conread position:30-399
               
               
               Cow position:chr19:26086878-26087247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:255
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):5, 169

               
               
               Conread position:31-449
               
               
               Cow position:chr19:34620348-34619926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 146

               
               
               Conread position:32-422
               
               
               Cow position:chr19:43440850-43441244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 167

               
               
               Conread position:32-434
               
               
               Cow position:chr19:16096865-16096465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:267
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):67, 191

               
               
               Conread position:32-449
               
               
               Cow position:chr19:6417287-6417712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 116

               
               
               Conread position:38-449
               
               
               Cow position:chr19:16694352-16693928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 30

               
               
               Conread position:39-447
               
               
               Cow position:chr19:9542203-9541799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:277
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):72, 185

               
               
               Conread position:40-448
               
               
               Cow position:chr19:40051690-40051291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 83

               
               
               Conread position:43-397
               
               
               Cow position:chr19:6610303-6609947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:244
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):66, 256

               
               
               Conread position:47-367
               
               
               Cow position:chr19:20693201-20693520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:219
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):298, 174

               
               
               Conread position:50-473
               
               
               Cow position:chr19:3084502-3084083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:282
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):65, 171

               
               
               Conread position:51-321
               
               
               Cow position:chr19:41187507-41187779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:186
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):121, 209

               
               
               Conread position:51-432
               
               
               Cow position:chr19:47118790-47118409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 28

               
               
               Conread position:55-448
               
               
               Cow position:chr19:35782423-35782040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:268
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):11, 170

               
               
               Conread position:56-504
               
               
               Cow position:chr19:55236204-55236643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 113

               
               
               Conread position:57-286
               
               
               Cow position:chr19:53037441-53037210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:57-448
               
               
               Cow position:chr19:20622374-20622756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):160, 53

               
               
               Conread position:62-411
               
               
               Cow position:chr19:33823035-33823382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 8

               
               
               Conread position:63-448
               
               
               Cow position:chr19:21335891-21335493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 7

               
               
               Conread position:65-434
               
               
               Cow position:chr19:50562406-50562769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:246
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):252, 104

               
               
               Conread position:65-449
               
               
               Cow position:chr19:15887602-15887217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 54

               
               
               Conread position:65-449
               
               
               Cow position:chr19:19919737-19919359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 43

               
               
               Conread position:66-336
               
               
               Cow position:chr19:19561227-19561504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:194
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):48, 246

               
               
               Conread position:66-342
               
               
               Cow position:chr19:36379969-36380245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 43

               
               
               Conread position:66-447
               
               
               Cow position:chr19:31846821-31846449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 70

               
               
               Conread position:66-505
               
               
               Cow position:chr19:40449753-40450179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):279, 44

               
               
               Conread position:66-508
               
               
               Cow position:chr19:1152945-1153368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 44

               
               
               Conread position:66-508
               
               
               Cow position:chr19:9387355-9387796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 83

               
               
               Conread position:67-439
               
               
               Cow position:chr19:9704108-9703748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:257
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):37, 118

               
               
               Conread position:67-473
               
               
               Cow position:chr19:35064462-35064064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):180, 101

               
               
               Conread position:67-508
               
               
               Cow position:chr19:33882435-33882027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):273, 43

               
               
               Conread position:67-508
               
               
               Cow position:chr19:47671474-47671914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 117

               
               
               Conread position:70-295
               
               
               Cow position:chr19:4537687-4537465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:161
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):41, 100

               
               
               Conread position:70-337
               
               
               Cow position:chr19:32989663-32989407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:189
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):89, 55

               
               
               Conread position:70-369
               
               
               Cow position:chr19:33306029-33306333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:211
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):45, 156

               
               
               Conread position:70-427
               
               
               Cow position:chr19:19661767-19662124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 155

               
               
               Conread position:70-434
               
               
               Cow position:chr19:25653032-25652672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:262
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):116, 24

               
               
               Conread position:70-448
               
               
               Cow position:chr19:10080794-10081177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 196

               
               
               Conread position:71-364
               
               
               Cow position:chr19:14993194-14992907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:213
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):31, 38

               
               
               Conread position:71-434
               
               
               Cow position:chr19:990683-990326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 112

               
               
               Conread position:71-448
               
               
               Cow position:chr19:14347736-14348113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 288

               
               
               Conread position:71-449
               
               
               Cow position:chr19:36844975-36845353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 104

               
               
               Conread position:71-508
               
               
               Cow position:chr19:41023955-41024401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:306
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):38, 89

               
               
               Conread position:72-449
               
               
               Cow position:chr19:33468752-33469124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 8

               
               
               Conread position:72-449
               
               
               Cow position:chr19:39360867-39361247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:259
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):42, 70

               
               
               Conread position:72-451
               
               
               Cow position:chr19:4502947-4503325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 102

               
               
               Conread position:73-502
               
               
               Cow position:chr19:9583043-9583450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:300
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):38, 112

               
               
               Conread position:74-316
               
               
               Cow position:chr19:5433832-5433583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):35, 89

               
               
               Conread position:77-442
               
               
               Cow position:chr19:34000943-34001303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:246
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):29, 64

               
               
               Conread position:77-447
               
               
               Cow position:chr19:10545976-10545603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:256
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):38, 57

               
               
               Conread position:77-508
               
               
               Cow position:chr19:42694720-42695169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 149

               
               
               Conread position:78-297
               
               
               Cow position:chr19:10093028-10093247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:158
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):24, 97

               
               
               Conread position:79-419
               
               
               Cow position:chr19:19924862-19924529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:245
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):95, 30

               
               
               Conread position:79-508
               
               
               Cow position:chr19:2342210-2342638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 148

               
               
               Conread position:80-298
               
               
               Cow position:chr19:43516971-43517187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):33, 142

               
               
               Conread position:80-449
               
               
               Cow position:chr19:30886129-30886499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 123

               
               
               Conread position:81-432
               
               
               Cow position:chr19:12748029-12747691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:238
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):30, 63

               
               
               Conread position:81-440
               
               
               Cow position:chr19:41945926-41946277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:247
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):30, 110

               
               
               Conread position:82-447
               
               
               Cow position:chr19:20935493-20935858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):105, 82

               
               
               Conread position:83-449
               
               
               Cow position:chr19:53372158-53371795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:250
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):26, 154

               
               
               Conread position:83-508
               
               
               Cow position:chr19:904721-905127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:300
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):32, 146

               
               
               Conread position:87-316
               
               
               Cow position:chr19:37562250-37562035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):27, 70

               
               
               Conread position:89-338
               
               
               Cow position:chr19:51334412-51334671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:172
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):20, 41

               
               
               Conread position:89-346
               
               
               Cow position:chr19:1898487-1898239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):140, 20

               
               
               Conread position:89-350
               
               
               Cow position:chr19:13390664-13390917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:191
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):20, 82

               
               
               Conread position:89-376
               
               
               Cow position:chr19:32450822-32451115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:215
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):20, 136

               
               
               Conread position:89-448
               
               
               Cow position:chr19:51185170-51185524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 141

               
               
               Conread position:89-449
               
               
               Cow position:chr19:3621172-3621532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:253
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):14, 135

               
               
               Conread position:89-506
               
               
               Cow position:chr19:5116123-5115714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:282
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):25, 108

               
               
               Conread position:91-432
               
               
               Cow position:chr19:51751423-51751080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:234
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):16, 6

               
               
               Conread position:91-466
               
               
               Cow position:chr19:6881132-6880756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:263
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):26, 50

               
               
               Conread position:92-508
               
               
               Cow position:chr19:20292337-20291931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:278
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):202, 21

               
               
               Conread position:92-508
               
               
               Cow position:chr19:26976300-26975891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 73

               
               
               Conread position:93-508
               
               
               Cow position:chr19:36245733-36245330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 16

               
               
               Conread position:94-432
               
               
               Cow position:chr19:43034992-43035325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:224
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):28, 198

               
               
               Conread position:94-449
               
               
               Cow position:chr19:30471586-30471251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):254, 58

               
               
               Conread position:95-395
               
               
               Cow position:chr19:32754267-32754575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):54, 15

               
               
               Conread position:96-323
               
               
               Cow position:chr19:31762779-31763002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:166
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):78, 12

               
               
               Conread position:96-385
               
               
               Cow position:chr19:25852081-25851794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:202
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):14, 211

               
               
               Conread position:96-421
               
               
               Cow position:chr19:30052249-30051918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:235
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):13, 78

               
               
               Conread position:96-448
               
               
               Cow position:chr19:1664443-1664088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 129

               
               
               Conread position:96-449
               
               
               Cow position:chr19:25865173-25864815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:244
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):14, 211

               
               
               Conread position:96-449
               
               
               Cow position:chr19:53243721-53243376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:240
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):13, 27

               
               
               Conread position:98-311
               
               
               Cow position:chr19:30435976-30436199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):76, 108

               
               
               Conread position:98-448
               
               
               Cow position:chr19:11191867-11191518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 128

               
               
               Conread position:99-367
               
               
               Cow position:chr19:2349503-2349229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):14, 203

               
               
               Conread position:101-508
               
               
               Cow position:chr19:35344694-35345090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 120

               
               
               Conread position:108-508
               
               
               Cow position:chr19:1713378-1712979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):135, 112

               
               
               Conread position:109-298
               
               
               Cow position:chr19:8209623-8209434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:130
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):70, 119

               
               
               Conread position:110-449
               
               
               Cow position:chr19:25851721-25851379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:232
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):63, 195

               
               
               Conread position:113-420
               
               
               Cow position:chr19:44489862-44490168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 24

               
               
               Conread position:114-508
               
               
               Cow position:chr19:6531662-6532054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):229, 104

               
               
               Conread position:115-450
               
               
               Cow position:chr19:8864520-8864844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:231
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):5, 74

               
               
               Conread position:116-441
               
               
               Cow position:chr19:51621410-51621085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:220
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):180, 69

               
               
               Conread position:116-452
               
               
               Cow position:chr19:22799310-22798972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 168

               
               
               Conread position:117-451
               
               
               Cow position:chr19:22134371-22134047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):231, 179

               
               
               Conread position:120-292
               
               
               Cow position:chr19:37423499-37423320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:126
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:122-397
               
               
               Cow position:chr19:22039550-22039824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:195
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):184, 125

               
               
               Conread position:123-448
               
               
               Cow position:chr19:6079579-6079264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):93, 46

               
               
               Conread position:123-471
               
               
               Cow position:chr19:24137038-24137393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 103

               
               
               Conread position:124-506
               
               
               Cow position:chr19:33685880-33686243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:252
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):225, 95

               
               
               Conread position:126-446
               
               
               Cow position:chr19:7404599-7404276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 32

               
               
               Conread position:127-397
               
               
               Cow position:chr19:8270823-8270550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):47, 171

               
               
               Conread position:129-338
               
               
               Cow position:chr19:42746546-42746347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:129-347
               
               
               Cow position:chr19:15840363-15840567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:152
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:129-449
               
               
               Cow position:chr19:34166150-34166470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:231
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):88, 135

               
               
               Conread position:132-506
               
               
               Cow position:chr19:48960179-48960571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:266
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):42, 172

               
               
               Conread position:132-507
               
               
               Cow position:chr19:33290271-33290642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:263
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):42, 134

               
               
               Conread position:134-448
               
               
               Cow position:chr19:25769452-25769773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 82

               
               
               Conread position:134-449
               
               
               Cow position:chr19:42563923-42564248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:220
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):36, 135

               
               
               Conread position:135-379
               
               
               Cow position:chr19:2765305-2765081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:170
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:137-337
               
               
               Cow position:chr19:1552029-1552224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):80, 35

               
               
               Conread position:144-449
               
               
               Cow position:chr19:35233849-35233557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:217
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):82, 36

               
               
               Conread position:146-364
               
               
               Cow position:chr19:30312851-30313056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:154
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):199, 20

               
               
               Conread position:150-449
               
               
               Cow position:chr19:51285439-51285742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):67, 11

               
               
               Conread position:151-417
               
               
               Cow position:chr19:41518103-41517817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:153-506
               
               
               Cow position:chr19:35107340-35107694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:235
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):243, 21

               
               
               Conread position:155-484
               
               
               Cow position:chr19:10556851-10557191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:236
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):36, 29

               
               
               Conread position:157-414
               
               
               Cow position:chr19:10173302-10173047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:185
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):171, 155

               
               
               Conread position:157-434
               
               
               Cow position:chr19:13840173-13840453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:200
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):145, 38

               
               
               Conread position:157-449
               
               
               Cow position:chr19:43659-43946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:201
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):15, 66

               
               
               Conread position:158-440
               
               
               Cow position:chr19:2690383-2690110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:189
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):21, 134

               
               
               Conread position:159-372
               
               
               Cow position:chr19:15442582-15442786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:155
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:159-507
               
               
               Cow position:chr19:25526101-25526458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):185, 59

               
               
               Conread position:161-508
               
               
               Cow position:chr19:15936660-15936992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:244
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):268, 58

               
               
               Conread position:164-449
               
               
               Cow position:chr19:7884404-7884681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):184, 58

               
               
               Conread position:164-508
               
               
               Cow position:chr19:4825156-4824820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:241
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):23, 60

               
               
               Conread position:165-451
               
               
               Cow position:chr19:32506292-32506011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:213
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):178, 84

               
               
               Conread position:172-409
               
               
               Cow position:chr19:26753866-26754099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):43, 13

               
               
               Conread position:172-508
               
               
               Cow position:chr19:25271587-25271257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:237
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):82, 48

               
               
               Conread position:172-508
               
               
               Cow position:chr19:34287854-34288195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:234
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):177, 60

               
               
               Conread position:172-508
               
               
               Cow position:chr19:38499997-38500336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:237
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):173, 55

               
               
               Conread position:174-346
               
               
               Cow position:chr19:2041689-2041868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:130
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):61, 127

               
               
               Conread position:174-449
               
               
               Cow position:chr19:11442812-11443094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:205
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:174-508
               
               
               Cow position:chr19:3216849-3217183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):174, 47

               
               
               Conread position:174-508
               
               
               Cow position:chr19:7032283-7031945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:242
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):175, 45

               
               
               Conread position:175-508
               
               
               Cow position:chr19:31535961-31536288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):170, 16

               
               
               Conread position:176-421
               
               
               Cow position:chr19:22450104-22449851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:186
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):61, 128

               
               
               Conread position:176-434
               
               
               Cow position:chr19:47859482-47859229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:185
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):172, 115

               
               
               Conread position:183-450
               
               
               Cow position:chr19:50682599-50682341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):170, 37

               
               
               Conread position:184-449
               
               
               Cow position:chr19:33237017-33237277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):164, 126

               
               
               Conread position:186-507
               
               
               Cow position:chr19:41695816-41695494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:221
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):165, 33

               
               
               Conread position:191-415
               
               
               Cow position:chr19:42273999-42273781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):51, 29

               
               
               Conread position:191-449
               
               
               Cow position:chr19:52185921-52185662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):95, 32

               
               
               Conread position:192-447
               
               
               Cow position:chr19:39385188-39384940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):42, 23

               
               
               Conread position:192-447
               
               
               Cow position:chr19:46094790-46094535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:187
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):155, 27

               
               
               Conread position:192-507
               
               
               Cow position:chr19:9408533-9408840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:218
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):37, 50

               
               
               Conread position:194-448
               
               
               Cow position:chr19:39485170-39485420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:172
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):133, 25

               
               
               Conread position:196-427
               
               
               Cow position:chr19:8869432-8869660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:168
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):20, 72

               
               
               Conread position:196-434
               
               
               Cow position:chr19:52158388-52158628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:170
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):149, 23

               
               
               Conread position:196-507
               
               
               Cow position:chr19:30551881-30552167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:225
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):152, 24

               
               
               Conread position:198-346
               
               
               Cow position:chr19:19173999-19174150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:116
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):82, 110

               
               
               Conread position:198-397
               
               
               Cow position:chr19:2152724-2152525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):31, 95

               
               
               Conread position:198-397
               
               
               Cow position:chr19:25855038-25854832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:198-425
               
               
               Cow position:chr19:41498150-41497919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:158
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):31, 110

               
               
               Conread position:199-449
               
               
               Cow position:chr19:4800598-4800845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:185
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):149, 100

               
               
               Conread position:199-449
               
               
               Cow position:chr19:39254597-39254342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:190
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):15, 43

               
               
               Conread position:199-449
               
               
               Cow position:chr19:43203133-43202887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):152, 100

               
               
               Conread position:200-434
               
               
               Cow position:chr19:7741748-7741515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:171
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):43, 20

               
               
               Conread position:200-502
               
               
               Cow position:chr19:17020150-17020435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):37, 59

               
               
               Conread position:201-449
               
               
               Cow position:chr19:52750902-52750655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):147, 98

               
               
               Conread position:209-449
               
               
               Cow position:chr19:28924624-28924860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):118, 82

               
               
               Conread position:209-508
               
               
               Cow position:chr19:40027065-40026772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):140, 11

               
               
               Conread position:211-448
               
               
               Cow position:chr19:31652428-31652660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:158
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):137, 81

               
               
               Conread position:212-448
               
               
               Cow position:chr19:42517388-42517153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):134, 7

               
               
               Conread position:214-507
               
               
               Cow position:chr19:42886821-42887111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):20, 13

               
               
               Conread position:215-431
               
               
               Cow position:chr19:16110324-16110102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:156
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):80, 26

               
               
               Conread position:224-379
               
               
               Cow position:chr19:12093883-12094043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:116
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:224-449
               
               
               Cow position:chr19:39664699-39664474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:156
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):124, 96

               
               
               Conread position:224-508
               
               
               Cow position:chr19:750090-750370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:198
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):121, 70

               
               
               Conread position:227-426
               
               
               Cow position:chr19:39801761-39801964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:142
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):66, 137

               
               
               Conread position:227-449
               
               
               Cow position:chr19:2221195-2220972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):121, 76

               
               
               Conread position:227-449
               
               
               Cow position:chr19:34819306-34819083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):113, 20

               
               
               Conread position:227-508
               
               
               Cow position:chr19:10971211-10970928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:211
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:228-449
               
               
               Cow position:chr19:47986740-47986962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):117, 85

               
               
               Conread position:238-508
               
               
               Cow position:chr19:31984756-31984488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):113, 18

               
               
               Conread position:242-486
               
               
               Cow position:chr19:6735333-6735085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:173
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):9, 66

               
               
               Conread position:243-499
               
               
               Cow position:chr19:39649176-39648919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):96, 60

               
               
               Conread position:243-504
               
               
               Cow position:chr19:31126693-31126955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):28, 60

               
               
               Conread position:243-506
               
               
               Cow position:chr19:24721576-24721835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:178
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):96, 59

               
               
               Conread position:245-434
               
               
               Cow position:chr19:16105181-16104992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):104, 51

               
               
               Conread position:245-448
               
               
               Cow position:chr19:23394686-23394886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):157, 57

               
               
               Conread position:247-508
               
               
               Cow position:chr19:5754902-5754631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:194
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):28, 207

               
               
               Conread position:248-434
               
               
               Cow position:chr19:10676954-10676773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:143
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):100, 46

               
               
               Conread position:250-506
               
               
               Cow position:chr19:16659654-16659409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):147, 14

               
               
               Conread position:251-447
               
               
               Cow position:chr19:30910049-30910247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:146
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):11, 52

               
               
               Conread position:251-508
               
               
               Cow position:chr19:3870511-3870777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:190
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):97, 62

               
               
               Conread position:254-508
               
               
               Cow position:chr19:952603-952850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):91, 52

               
               
               Conread position:258-508
               
               
               Cow position:chr19:4459527-4459262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:184
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):90, 34

               
               
               Conread position:259-504
               
               
               Cow position:chr19:28842455-28842202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):33, 72

               
               
               Conread position:262-449
               
               
               Cow position:chr19:39781435-39781623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):47, 34

               
               
               Conread position:265-449
               
               
               Cow position:chr19:6343990-6344176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):12, 6

               
               
               Conread position:266-449
               
               
               Cow position:chr19:39758443-39758624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):85, 36

               
               
               Conread position:266-449
               
               
               Cow position:chr19:43647334-43647520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):12, 31

               
               
               Conread position:266-504
               
               
               Cow position:chr19:25410921-25410678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:181
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):131, 15

               
               
               Conread position:268-449
               
               
               Cow position:chr19:43372968-43373142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:138
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):80, 28

               
               
               Conread position:268-469
               
               
               Cow position:chr19:54915768-54915569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):80, 33

               
               
               Conread position:271-449
               
               
               Cow position:chr19:42235954-42236131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):77, 22

               
               
               Conread position:274-508
               
               
               Cow position:chr19:41645290-41645530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:168
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):75, 46

               
               
               Conread position:280-508
               
               
               Cow position:chr19:12040557-12040780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:162
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):5, 44

               
               
               Conread position:281-448
               
               
               Cow position:chr19:2965474-2965642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):9, 75

               
               
               Conread position:281-449
               
               
               Cow position:chr19:17354794-17354959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:124
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):67, 24

               
               
               Conread position:282-506
               
               
               Cow position:chr19:38871004-38871228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:160
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):59, 24

               
               
               Conread position:283-448
               
               
               Cow position:chr19:39613231-39613064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):13, 133

               
               
               Conread position:288-461
               
               
               Cow position:chr19:3080404-3080577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):61, 18

               
               
               Conread position:288-504
               
               
               Cow position:chr19:14563311-14563542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:162
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:295-508
               
               
               Cow position:chr19:21176794-21176566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:160
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:299-508
               
               
               Cow position:chr19:46713588-46713804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:160
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):50, 135

               
               
               Conread position:305-448
               
               
               Cow position:chr19:5406457-5406603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:109
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:306-508
               
               
               Cow position:chr19:30935813-30935608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):10, 120

               
               
               Conread position:306-508
               
               
               Cow position:chr19:49406486-49406693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:147
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):42, 66

               
               
               Conread position:307-449
               
               
               Cow position:chr19:18921288-18921139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:112
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:307-449
               
               
               Cow position:chr19:30241658-30241801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):41, 18

               
               
               Conread position:308-508
               
               
               Cow position:chr19:8876824-8876625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):94, 40

               
               
               Conread position:320-502
               
               
               Cow position:chr19:26003643-26003458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:328-508
               
               
               Cow position:chr19:22932568-22932387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:343-494
               
               
               Cow position:chr19:42102601-42102450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):10, 32

               
               
               Conread position:346-500
               
               
               Cow position:chr19:5986234-5986389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:119
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:346-508
               
               
               Cow position:chr19:47783766-47783601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):39, 108

               
               
               Conread position:5-449
               
               
               Cow position:chr2:69747952-69747501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 110

               
               
               Conread position:10-449
               
               
               Cow position:chr2:13369337-13369769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 44

               
               
               Conread position:11-412
               
               
               Cow position:chr2:69676857-69676453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 289

               
               
               Conread position:11-467
               
               
               Cow position:chr2:70580033-70579571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 67

               
               
               Conread position:11-508
               
               
               Cow position:chr2:4070606-4071094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:359
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):169, 21

               
               
               Conread position:11-508
               
               
               Cow position:chr2:29612246-29612724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:360
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 34

               
               
               Conread position:11-508
               
               
               Cow position:chr2:31457171-31457661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:367
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):102, 35

               
               
               Conread position:12-432
               
               
               Cow position:chr2:31910343-31909929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 61

               
               
               Conread position:12-507
               
               
               Cow position:chr2:45478913-45478411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:522
               
               
               Alignm identity:353
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):97, 66

               
               
               Conread position:15-373
               
               
               Cow position:chr2:48849796-48849436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:232
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):102, 270

               
               
               Conread position:15-432
               
               
               Cow position:chr2:43596488-43596055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:294
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):96, 201

               
               
               Conread position:15-447
               
               
               Cow position:chr2:7524454-7524019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):159, 83

               
               
               Conread position:15-487
               
               
               Cow position:chr2:53533125-53532660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 161

               
               
               Conread position:16-268
               
               
               Cow position:chr2:14939125-14939383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:170
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:16-279
               
               
               Cow position:chr2:28285847-28285582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):100, 148

               
               
               Conread position:16-282
               
               
               Cow position:chr2:54253042-54253301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:202
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):91, 31

               
               
               Conread position:16-284
               
               
               Cow position:chr2:37072496-37072770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 14

               
               
               Conread position:16-290
               
               
               Cow position:chr2:85067441-85067161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:200
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):44, 215

               
               
               Conread position:16-293
               
               
               Cow position:chr2:32406357-32406642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:214
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):44, 105

               
               
               Conread position:16-300
               
               
               Cow position:chr2:42599608-42599900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 213

               
               
               Conread position:16-301
               
               
               Cow position:chr2:840842-841133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 274

               
               
               Conread position:16-301
               
               
               Cow position:chr2:73594723-73595009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):100, 144

               
               
               Conread position:16-302
               
               
               Cow position:chr2:79311074-79311369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:196
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):89, 94

               
               
               Conread position:16-304
               
               
               Cow position:chr2:13543711-13543997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):209, 94

               
               
               Conread position:16-304
               
               
               Cow position:chr2:69581825-69581534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:208
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):157, 92

               
               
               Conread position:16-307
               
               
               Cow position:chr2:21171085-21171358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):93, 29

               
               
               Conread position:16-308
               
               
               Cow position:chr2:49344398-49344690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):99, 73

               
               
               Conread position:16-311
               
               
               Cow position:chr2:1918599-1918319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):93, 52

               
               
               Conread position:16-311
               
               
               Cow position:chr2:83887368-83887671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:194
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:16-312
               
               
               Cow position:chr2:48895972-48896275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):101, 291

               
               
               Conread position:16-320
               
               
               Cow position:chr2:45259393-45259095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 160

               
               
               Conread position:16-320
               
               
               Cow position:chr2:52386239-52385932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:223
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):51, 178

               
               
               Conread position:16-323
               
               
               Cow position:chr2:82648120-82647830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:219
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:16-333
               
               
               Cow position:chr2:60470865-60471187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:227
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):58, 173

               
               
               Conread position:16-334
               
               
               Cow position:chr2:9591622-9591930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:222
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):158, 73

               
               
               Conread position:16-338
               
               
               Cow position:chr2:818260-818594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:242
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):43, 103

               
               
               Conread position:16-338
               
               
               Cow position:chr2:65604244-65603919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 216

               
               
               Conread position:16-355
               
               
               Cow position:chr2:5598221-5598562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:228
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):95, 250

               
               
               Conread position:16-356
               
               
               Cow position:chr2:64699030-64699373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):101, 276

               
               
               Conread position:16-358
               
               
               Cow position:chr2:56102783-56102431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):158, 78

               
               
               Conread position:16-359
               
               
               Cow position:chr2:36007890-36007562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:244
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):322, 45

               
               
               Conread position:16-364
               
               
               Cow position:chr2:1365211-1364861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:244
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):60, 285

               
               
               Conread position:16-367
               
               
               Cow position:chr2:39425258-39425611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:230
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):101, 250

               
               
               Conread position:16-367
               
               
               Cow position:chr2:44094808-44095161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:230
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):46, 38

               
               
               Conread position:16-367
               
               
               Cow position:chr2:45723510-45723864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:229
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):101, 277

               
               
               Conread position:16-367
               
               
               Cow position:chr2:49741215-49741570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:232
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):101, 278

               
               
               Conread position:16-367
               
               
               Cow position:chr2:78363260-78363613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:223
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):93, 276

               
               
               Conread position:16-373
               
               
               Cow position:chr2:3063108-3062749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:233
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):101, 247

               
               
               Conread position:16-373
               
               
               Cow position:chr2:24872147-24871788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:230
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):47, 38

               
               
               Conread position:16-373
               
               
               Cow position:chr2:57938842-57939201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:228
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):85, 276

               
               
               Conread position:16-376
               
               
               Cow position:chr2:14806651-14806300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 93

               
               
               Conread position:16-384
               
               
               Cow position:chr2:69237956-69238328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 158

               
               
               Conread position:16-392
               
               
               Cow position:chr2:11806002-11806376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:257
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):95, 215

               
               
               Conread position:16-394
               
               
               Cow position:chr2:23493218-23493592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 20

               
               
               Conread position:16-395
               
               
               Cow position:chr2:39662381-39662765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 209

               
               
               Conread position:16-397
               
               
               Cow position:chr2:71800408-71800022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 222

               
               
               Conread position:16-399
               
               
               Cow position:chr2:65270011-65269625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):158, 92

               
               
               Conread position:16-408
               
               
               Cow position:chr2:39078060-39078452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:270
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):93, 45

               
               
               Conread position:16-408
               
               
               Cow position:chr2:39280875-39281269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:267
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):83, 221

               
               
               Conread position:16-408
               
               
               Cow position:chr2:80242506-80242109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 96

               
               
               Conread position:16-415
               
               
               Cow position:chr2:35181080-35181480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:261
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):91, 46

               
               
               Conread position:16-424
               
               
               Cow position:chr2:5297422-5297827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 210

               
               
               Conread position:16-424
               
               
               Cow position:chr2:6038690-6039103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 66

               
               
               Conread position:16-425
               
               
               Cow position:chr2:6539554-6539146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):158, 207

               
               
               Conread position:16-425
               
               
               Cow position:chr2:29268747-29269163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 76

               
               
               Conread position:16-426
               
               
               Cow position:chr2:32432048-32431644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 165

               
               
               Conread position:16-426
               
               
               Cow position:chr2:50277705-50278114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 94

               
               
               Conread position:16-427
               
               
               Cow position:chr2:28820047-28820457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 68

               
               
               Conread position:16-427
               
               
               Cow position:chr2:36077031-36077445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):154, 92

               
               
               Conread position:16-427
               
               
               Cow position:chr2:69250995-69250576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 356

               
               
               Conread position:16-427
               
               
               Cow position:chr2:76561794-76562199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 207

               
               
               Conread position:16-434
               
               
               Cow position:chr2:14089463-14089892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 299

               
               
               Conread position:16-434
               
               
               Cow position:chr2:23712574-23712973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:280
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):71, 98

               
               
               Conread position:16-434
               
               
               Cow position:chr2:39263173-39263587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 91

               
               
               Conread position:16-434
               
               
               Cow position:chr2:41451911-41452333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 211

               
               
               Conread position:16-434
               
               
               Cow position:chr2:45439141-45439534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 27

               
               
               Conread position:16-434
               
               
               Cow position:chr2:67301725-67302116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:280
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):332, 58

               
               
               Conread position:16-434
               
               
               Cow position:chr2:68110059-68109641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 38

               
               
               Conread position:16-434
               
               
               Cow position:chr2:70674420-70674824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):382, 88

               
               
               Conread position:16-434
               
               
               Cow position:chr2:70945082-70945504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 14

               
               
               Conread position:16-446
               
               
               Cow position:chr2:55632458-55632887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 199

               
               
               Conread position:16-447
               
               
               Cow position:chr2:15059380-15058951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):163, 75

               
               
               Conread position:16-447
               
               
               Cow position:chr2:61485319-61485736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 171

               
               
               Conread position:16-447
               
               
               Cow position:chr2:81388374-81388803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 8

               
               
               Conread position:16-448
               
               
               Cow position:chr2:11696820-11697239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 14

               
               
               Conread position:16-448
               
               
               Cow position:chr2:44081132-44081550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 139

               
               
               Conread position:16-448
               
               
               Cow position:chr2:56351233-56350803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 68

               
               
               Conread position:16-449
               
               
               Cow position:chr2:192773-192352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):158, 48

               
               
               Conread position:16-449
               
               
               Cow position:chr2:2673208-2673646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):158, 94

               
               
               Conread position:16-449
               
               
               Cow position:chr2:4017172-4016733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:309
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):147, 21

               
               
               Conread position:16-449
               
               
               Cow position:chr2:17940603-17940173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):158, 112

               
               
               Conread position:16-449
               
               
               Cow position:chr2:28303007-28303434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 12

               
               
               Conread position:16-449
               
               
               Cow position:chr2:28711294-28710889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:295
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):332, 46

               
               
               Conread position:16-449
               
               
               Cow position:chr2:31355390-31355812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 78

               
               
               Conread position:16-449
               
               
               Cow position:chr2:37009101-37009525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 158

               
               
               Conread position:16-449
               
               
               Cow position:chr2:42255114-42255550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 194

               
               
               Conread position:16-449
               
               
               Cow position:chr2:42969781-42970224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 38

               
               
               Conread position:16-449
               
               
               Cow position:chr2:44482963-44482540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 175

               
               
               Conread position:16-449
               
               
               Cow position:chr2:45623709-45624129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 19

               
               
               Conread position:16-449
               
               
               Cow position:chr2:45936271-45935851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 54

               
               
               Conread position:16-449
               
               
               Cow position:chr2:46201955-46202377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 44

               
               
               Conread position:16-449
               
               
               Cow position:chr2:46227151-46227573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 66

               
               
               Conread position:16-449
               
               
               Cow position:chr2:65931656-65932080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 21

               
               
               Conread position:16-449
               
               
               Cow position:chr2:69419884-69419470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):330, 55

               
               
               Conread position:16-449
               
               
               Cow position:chr2:81927536-81927962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 73

               
               
               Conread position:16-451
               
               
               Cow position:chr2:1303633-1304066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 19

               
               
               Conread position:16-451
               
               
               Cow position:chr2:52485305-52484843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 293

               
               
               Conread position:16-451
               
               
               Cow position:chr2:56828885-56828444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 158

               
               
               Conread position:16-452
               
               
               Cow position:chr2:58074666-58074228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 133

               
               
               Conread position:16-455
               
               
               Cow position:chr2:59397376-59396933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 267

               
               
               Conread position:16-459
               
               
               Cow position:chr2:20900786-20900338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 272

               
               
               Conread position:16-459
               
               
               Cow position:chr2:73282878-73282449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 106

               
               
               Conread position:16-463
               
               
               Cow position:chr2:78906617-78907047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:307
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):86, 45

               
               
               Conread position:16-471
               
               
               Cow position:chr2:16513538-16513989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:313
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):98, 73

               
               
               Conread position:16-472
               
               
               Cow position:chr2:27613343-27612894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):99, 210

               
               
               Conread position:16-472
               
               
               Cow position:chr2:70895713-70896173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 14

               
               
               Conread position:16-473
               
               
               Cow position:chr2:62225866-62226306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 24

               
               
               Conread position:16-476
               
               
               Cow position:chr2:45499514-45499063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 147

               
               
               Conread position:16-499
               
               
               Cow position:chr2:10356986-10356514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:491
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 12

               
               
               Conread position:16-499
               
               
               Cow position:chr2:11734195-11734688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:501
               
               
               Alignm identity:370
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 93

               
               
               Conread position:16-506
               
               
               Cow position:chr2:41313583-41314059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:497
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):99, 46

               
               
               Conread position:16-507
               
               
               Cow position:chr2:82311512-82311020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 57

               
               
               Conread position:16-508
               
               
               Cow position:chr2:22056-21563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:502
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 149

               
               
               Conread position:16-508
               
               
               Cow position:chr2:14710438-14709935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:524
               
               
               Alignm identity:359
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 173

               
               
               Conread position:16-508
               
               
               Cow position:chr2:24270907-24271406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 45

               
               
               Conread position:16-508
               
               
               Cow position:chr2:33262933-33262438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:359
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 122

               
               
               Conread position:16-508
               
               
               Cow position:chr2:39855472-39855956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:502
               
               
               Alignm identity:359
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 21

               
               
               Conread position:16-508
               
               
               Cow position:chr2:42192130-42192616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:351
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 45

               
               
               Conread position:16-508
               
               
               Cow position:chr2:43773892-43773412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:496
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 146

               
               
               Conread position:16-508
               
               
               Cow position:chr2:51638229-51638725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:514
               
               
               Alignm identity:361
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 44

               
               
               Conread position:16-508
               
               
               Cow position:chr2:70908632-70908141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:515
               
               
               Alignm identity:347
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):95, 138

               
               
               Conread position:17-300
               
               
               Cow position:chr2:17341258-17341545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:207
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):74, 94

               
               
               Conread position:17-347
               
               
               Cow position:chr2:27076393-27076721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:244
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):42, 211

               
               
               Conread position:17-366
               
               
               Cow position:chr2:61889844-61889494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:226
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):100, 275

               
               
               Conread position:17-370
               
               
               Cow position:chr2:7965803-7966135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:260
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):50, 141

               
               
               Conread position:17-373
               
               
               Cow position:chr2:54740923-54741280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:236
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):100, 249

               
               
               Conread position:17-390
               
               
               Cow position:chr2:51824624-51824979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 37

               
               
               Conread position:17-392
               
               
               Cow position:chr2:50445578-50445959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 293

               
               
               Conread position:17-447
               
               
               Cow position:chr2:14854007-14854418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 110

               
               
               Conread position:17-448
               
               
               Cow position:chr2:2590258-2589842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 13

               
               
               Conread position:17-448
               
               
               Cow position:chr2:10656154-10655743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 130

               
               
               Conread position:17-448
               
               
               Cow position:chr2:48525856-48525426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:291
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):78, 136

               
               
               Conread position:17-449
               
               
               Cow position:chr2:23271245-23270818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:295
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):50, 96

               
               
               Conread position:17-449
               
               
               Cow position:chr2:44191168-44191594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 102

               
               
               Conread position:17-449
               
               
               Cow position:chr2:47098249-47097838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 57

               
               
               Conread position:17-449
               
               
               Cow position:chr2:76314170-76313754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):331, 14

               
               
               Conread position:17-503
               
               
               Cow position:chr2:27358726-27359224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:504
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 137

               
               
               Conread position:17-507
               
               
               Cow position:chr2:39815596-39815105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:504
               
               
               Alignm identity:357
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 44

               
               
               Conread position:17-508
               
               
               Cow position:chr2:7721217-7720740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:498
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 44

               
               
               Conread position:17-508
               
               
               Cow position:chr2:15298225-15298726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:514
               
               
               Alignm identity:353
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 92

               
               
               Conread position:17-508
               
               
               Cow position:chr2:18997422-18997908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:352
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):332, 77

               
               
               Conread position:17-508
               
               
               Cow position:chr2:38659095-38658605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 44

               
               
               Conread position:17-508
               
               
               Cow position:chr2:54789958-54790474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:523
               
               
               Alignm identity:365
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 292

               
               
               Conread position:18-308
               
               
               Cow position:chr2:27600860-27600566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:212
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):91, 237

               
               
               Conread position:18-322
               
               
               Cow position:chr2:48069714-48069412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:224
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):87, 43

               
               
               Conread position:18-391
               
               
               Cow position:chr2:22125608-22125225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:262
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):80, 47

               
               
               Conread position:18-423
               
               
               Cow position:chr2:43718593-43718991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 210

               
               
               Conread position:18-434
               
               
               Cow position:chr2:45912953-45912532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 207

               
               
               Conread position:18-449
               
               
               Cow position:chr2:40728053-40728465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):211, 23

               
               
               Conread position:18-449
               
               
               Cow position:chr2:72527640-72528074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 43

               
               
               Conread position:18-499
               
               
               Cow position:chr2:18061949-18061466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:496
               
               
               Alignm identity:353
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 210

               
               
               Conread position:18-506
               
               
               Cow position:chr2:74209638-74209172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:494
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 95

               
               
               Conread position:18-508
               
               
               Cow position:chr2:34694923-34695408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:499
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 33

               
               
               Conread position:19-356
               
               
               Cow position:chr2:58248179-58247854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:235
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):51, 56

               
               
               Conread position:19-448
               
               
               Cow position:chr2:55278907-55278477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):203, 74

               
               
               Conread position:19-448
               
               
               Cow position:chr2:71437695-71437264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:289
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):97, 48

               
               
               Conread position:19-507
               
               
               Cow position:chr2:19212357-19211870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:368
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 168

               
               
               Conread position:20-450
               
               
               Cow position:chr2:38273227-38273665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 76

               
               
               Conread position:22-447
               
               
               Cow position:chr2:24593578-24593980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:298
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):54, 108

               
               
               Conread position:23-448
               
               
               Cow position:chr2:27338093-27337665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 182

               
               
               Conread position:24-335
               
               
               Cow position:chr2:46184583-46184266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:224
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):85, 275

               
               
               Conread position:25-497
               
               
               Cow position:chr2:43951691-43952135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 133

               
               
               Conread position:27-405
               
               
               Cow position:chr2:65929145-65928771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:258
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):80, 113

               
               
               Conread position:27-434
               
               
               Cow position:chr2:33251381-33250990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:240
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):72, 116

               
               
               Conread position:27-448
               
               
               Cow position:chr2:46033018-46033449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 114

               
               
               Conread position:30-451
               
               
               Cow position:chr2:54654915-54654498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:283
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):79, 15

               
               
               Conread position:31-303
               
               
               Cow position:chr2:73985323-73985045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:197
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:31-357
               
               
               Cow position:chr2:74031290-74030966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:231
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):84, 265

               
               
               Conread position:34-434
               
               
               Cow position:chr2:43609389-43609018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:276
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):314, 29

               
               
               Conread position:35-508
               
               
               Cow position:chr2:6055665-6056136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 199

               
               
               Conread position:39-293
               
               
               Cow position:chr2:48617684-48617943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:189
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):70, 186

               
               
               Conread position:39-427
               
               
               Cow position:chr2:47808438-47808827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:261
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):49, 28

               
               
               Conread position:39-434
               
               
               Cow position:chr2:39489495-39489874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:264
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):152, 35

               
               
               Conread position:39-449
               
               
               Cow position:chr2:45535176-45535581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 140

               
               
               Conread position:39-502
               
               
               Cow position:chr2:16331776-16332235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:310
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):91, 66

               
               
               Conread position:40-459
               
               
               Cow position:chr2:46231059-46230637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 21

               
               
               Conread position:43-449
               
               
               Cow position:chr2:80115818-80116209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 14

               
               
               Conread position:46-372
               
               
               Cow position:chr2:29883024-29882702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:231
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):16, 34

               
               
               Conread position:46-508
               
               
               Cow position:chr2:26501227-26500747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 184

               
               
               Conread position:47-336
               
               
               Cow position:chr2:64473924-64473639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:214
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):59, 144

               
               
               Conread position:47-449
               
               
               Cow position:chr2:54700163-54700571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 62

               
               
               Conread position:49-302
               
               
               Cow position:chr2:51644740-51644987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:182
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):60, 24

               
               
               Conread position:49-508
               
               
               Cow position:chr2:70703970-70704428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):125, 56

               
               
               Conread position:52-427
               
               
               Cow position:chr2:57939402-57939774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:262
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):57, 5

               
               
               Conread position:53-434
               
               
               Cow position:chr2:47008626-47008244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:264
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):55, 248

               
               
               Conread position:53-452
               
               
               Cow position:chr2:26102498-26102885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 191

               
               
               Conread position:54-452
               
               
               Cow position:chr2:53430452-53430833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 35

               
               
               Conread position:54-507
               
               
               Cow position:chr2:35483734-35483270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:297
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):120, 40

               
               
               Conread position:57-434
               
               
               Cow position:chr2:47116189-47115819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 112

               
               
               Conread position:57-439
               
               
               Cow position:chr2:50379324-50379706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:248
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):20, 8

               
               
               Conread position:57-448
               
               
               Cow position:chr2:13582308-13582697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 73

               
               
               Conread position:59-423
               
               
               Cow position:chr2:2740211-2740549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:257
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:64-508
               
               
               Cow position:chr2:33554429-33553985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:305
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):36, 111

               
               
               Conread position:65-338
               
               
               Cow position:chr2:77359222-77359487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):42, 61

               
               
               Conread position:65-472
               
               
               Cow position:chr2:50580101-50580498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 235

               
               
               Conread position:66-317
               
               
               Cow position:chr2:11900163-11900411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):43, 159

               
               
               Conread position:66-338
               
               
               Cow position:chr2:45311394-45311115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:201
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):45, 167

               
               
               Conread position:66-351
               
               
               Cow position:chr2:66615185-66614893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:208
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):43, 13

               
               
               Conread position:66-431
               
               
               Cow position:chr2:14349528-14349865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:255
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):24, 102

               
               
               Conread position:66-447
               
               
               Cow position:chr2:50352597-50353006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:282
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:66-448
               
               
               Cow position:chr2:24434552-24434166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:257
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):108, 28

               
               
               Conread position:66-449
               
               
               Cow position:chr2:42927718-42927336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 159

               
               
               Conread position:66-451
               
               
               Cow position:chr2:27173102-27173484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 12

               
               
               Conread position:66-499
               
               
               Cow position:chr2:425554-425978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 42

               
               
               Conread position:66-503
               
               
               Cow position:chr2:31155448-31155876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 157

               
               
               Conread position:66-507
               
               
               Cow position:chr2:59380735-59380326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:296
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):21, 48

               
               
               Conread position:66-508
               
               
               Cow position:chr2:30816690-30817131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 67

               
               
               Conread position:66-508
               
               
               Cow position:chr2:40428070-40427624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 159

               
               
               Conread position:67-434
               
               
               Cow position:chr2:77241590-77241976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:279
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):42, 17

               
               
               Conread position:67-494
               
               
               Cow position:chr2:29382939-29382519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 76

               
               
               Conread position:67-506
               
               
               Cow position:chr2:33659970-33659530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 101

               
               
               Conread position:67-508
               
               
               Cow position:chr2:32446576-32446170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):278, 43

               
               
               Conread position:69-302
               
               
               Cow position:chr2:25283546-25283784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):45, 236

               
               
               Conread position:69-302
               
               
               Cow position:chr2:25285290-25285528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):45, 236

               
               
               Conread position:70-288
               
               
               Cow position:chr2:70746534-70746754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):39, 73

               
               
               Conread position:70-340
               
               
               Cow position:chr2:73069454-73069731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:206
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):39, 180

               
               
               Conread position:70-368
               
               
               Cow position:chr2:62978930-62978640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:218
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):7, 120

               
               
               Conread position:70-396
               
               
               Cow position:chr2:51594502-51594826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 120

               
               
               Conread position:70-434
               
               
               Cow position:chr2:46745659-46746023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 152

               
               
               Conread position:70-448
               
               
               Cow position:chr2:64322992-64323354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):152, 38

               
               
               Conread position:70-449
               
               
               Cow position:chr2:46189353-46188981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 41

               
               
               Conread position:70-449
               
               
               Cow position:chr2:67596280-67595905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:264
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):10, 130

               
               
               Conread position:70-451
               
               
               Cow position:chr2:41954616-41955002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 40

               
               
               Conread position:70-506
               
               
               Cow position:chr2:52170988-52171421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 160

               
               
               Conread position:70-507
               
               
               Cow position:chr2:80222-79770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:310
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):32, 53

               
               
               Conread position:71-303
               
               
               Cow position:chr2:85246594-85246357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:166
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:71-338
               
               
               Cow position:chr2:32408737-32408491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:190
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):155, 33

               
               
               Conread position:71-343
               
               
               Cow position:chr2:62685374-62685648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:196
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):40, 151

               
               
               Conread position:71-359
               
               
               Cow position:chr2:77377974-77378268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):38, 160

               
               
               Conread position:71-391
               
               
               Cow position:chr2:11616837-11617151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:226
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):38, 76

               
               
               Conread position:71-394
               
               
               Cow position:chr2:41157701-41158027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:231
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):45, 128

               
               
               Conread position:71-397
               
               
               Cow position:chr2:13354413-13354738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 222

               
               
               Conread position:71-408
               
               
               Cow position:chr2:59992501-59992178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:225
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):38, 100

               
               
               Conread position:71-434
               
               
               Cow position:chr2:18636631-18636988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:252
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):38, 156

               
               
               Conread position:71-434
               
               
               Cow position:chr2:37113460-37113096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:268
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):38, 94

               
               
               Conread position:71-448
               
               
               Cow position:chr2:18621144-18621530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 155

               
               
               Conread position:71-448
               
               
               Cow position:chr2:40492107-40492471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:255
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):38, 71

               
               
               Conread position:71-449
               
               
               Cow position:chr2:79403845-79404206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:258
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):151, 33

               
               
               Conread position:71-451
               
               
               Cow position:chr2:73353526-73353909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 237

               
               
               Conread position:71-472
               
               
               Cow position:chr2:14749333-14749729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 151

               
               
               Conread position:71-505
               
               
               Cow position:chr2:42183109-42183554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):114, 42

               
               
               Conread position:71-508
               
               
               Cow position:chr2:4384154-4383724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 114

               
               
               Conread position:71-508
               
               
               Cow position:chr2:29802370-29801953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:316
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):34, 54

               
               
               Conread position:72-398
               
               
               Cow position:chr2:36878479-36878155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 153

               
               
               Conread position:72-495
               
               
               Cow position:chr2:1658238-1658665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:280
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):37, 95

               
               
               Conread position:73-434
               
               
               Cow position:chr2:6282271-6281924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:251
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):6, 36

               
               
               Conread position:73-508
               
               
               Cow position:chr2:46741216-46741657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 132

               
               
               Conread position:74-448
               
               
               Cow position:chr2:47072932-47073301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 85

               
               
               Conread position:74-469
               
               
               Cow position:chr2:43835822-43835426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 149

               
               
               Conread position:74-485
               
               
               Cow position:chr2:48748983-48748575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 106

               
               
               Conread position:74-504
               
               
               Cow position:chr2:70539635-70539197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 223

               
               
               Conread position:75-508
               
               
               Cow position:chr2:17967291-17966850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 10

               
               
               Conread position:76-485
               
               
               Cow position:chr2:41461106-41461520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 156

               
               
               Conread position:77-393
               
               
               Cow position:chr2:59906284-59905984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:215
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):28, 78

               
               
               Conread position:77-435
               
               
               Cow position:chr2:31750225-31749869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:242
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):34, 218

               
               
               Conread position:77-448
               
               
               Cow position:chr2:54789523-54789888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:255
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):32, 60

               
               
               Conread position:77-449
               
               
               Cow position:chr2:32048232-32048595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 94

               
               
               Conread position:77-507
               
               
               Cow position:chr2:41248312-41248756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 53

               
               
               Conread position:77-507
               
               
               Cow position:chr2:76110139-76110583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 112

               
               
               Conread position:78-378
               
               
               Cow position:chr2:28118246-28118544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:218
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):31, 110

               
               
               Conread position:78-434
               
               
               Cow position:chr2:39564099-39564453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 13

               
               
               Conread position:78-448
               
               
               Cow position:chr2:36435946-36436320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:254
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):31, 148

               
               
               Conread position:78-451
               
               
               Cow position:chr2:70752536-70752912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 74

               
               
               Conread position:78-452
               
               
               Cow position:chr2:21002932-21003290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:259
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):272, 69

               
               
               Conread position:78-472
               
               
               Cow position:chr2:42309809-42309418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 66

               
               
               Conread position:79-449
               
               
               Cow position:chr2:67479728-67480090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:250
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):20, 30

               
               
               Conread position:79-504
               
               
               Cow position:chr2:51799575-51799150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 84

               
               
               Conread position:79-508
               
               
               Cow position:chr2:45665779-45666196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 61

               
               
               Conread position:79-508
               
               
               Cow position:chr2:47990186-47990611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 90

               
               
               Conread position:81-434
               
               
               Cow position:chr2:46204256-46204615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:252
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):30, 93

               
               
               Conread position:81-435
               
               
               Cow position:chr2:28653783-28653435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:250
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):30, 90

               
               
               Conread position:81-498
               
               
               Cow position:chr2:39584199-39584616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 143

               
               
               Conread position:81-502
               
               
               Cow position:chr2:22859889-22859465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 29

               
               
               Conread position:81-508
               
               
               Cow position:chr2:41057754-41057352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 31

               
               
               Conread position:83-273
               
               
               Cow position:chr2:1203430-1203626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):12, 143

               
               
               Conread position:83-449
               
               
               Cow position:chr2:16839383-16839749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:246
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):26, 139

               
               
               Conread position:83-508
               
               
               Cow position:chr2:42925054-42925464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 142

               
               
               Conread position:84-365
               
               
               Cow position:chr2:76183052-76182781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:204
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):264, 24

               
               
               Conread position:84-432
               
               
               Cow position:chr2:49467370-49467726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:242
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):56, 110

               
               
               Conread position:89-333
               
               
               Cow position:chr2:25964729-25964489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:186
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):20, 110

               
               
               Conread position:89-434
               
               
               Cow position:chr2:46194551-46194881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 126

               
               
               Conread position:89-447
               
               
               Cow position:chr2:6697734-6697391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:250
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):260, 21

               
               
               Conread position:89-449
               
               
               Cow position:chr2:80904169-80903801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:260
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):22, 33

               
               
               Conread position:89-449
               
               
               Cow position:chr2:82262623-82262260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 202

               
               
               Conread position:89-508
               
               
               Cow position:chr2:14555995-14555581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 135

               
               
               Conread position:90-333
               
               
               Cow position:chr2:50777532-50777768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:175
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):19, 131

               
               
               Conread position:91-471
               
               
               Cow position:chr2:62644357-62644727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 54

               
               
               Conread position:91-508
               
               
               Cow position:chr2:38118232-38117832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 110

               
               
               Conread position:92-448
               
               
               Cow position:chr2:16428641-16428287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 138

               
               
               Conread position:94-448
               
               
               Cow position:chr2:72183727-72183378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 63

               
               
               Conread position:94-448
               
               
               Cow position:chr2:80963883-80963536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 74

               
               
               Conread position:95-294
               
               
               Cow position:chr2:14396475-14396280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):12, 35

               
               
               Conread position:95-434
               
               
               Cow position:chr2:48864219-48863891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:236
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):14, 112

               
               
               Conread position:95-446
               
               
               Cow position:chr2:23848058-23847723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 76

               
               
               Conread position:95-485
               
               
               Cow position:chr2:793409-793796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 129

               
               
               Conread position:95-508
               
               
               Cow position:chr2:15249945-15250359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 76

               
               
               Conread position:96-391
               
               
               Cow position:chr2:46175513-46175204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:228
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):13, 226

               
               
               Conread position:96-471
               
               
               Cow position:chr2:50400182-50400551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 131

               
               
               Conread position:96-506
               
               
               Cow position:chr2:26042475-26042068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 9

               
               
               Conread position:98-396
               
               
               Cow position:chr2:34535393-34535096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 109

               
               
               Conread position:98-434
               
               
               Cow position:chr2:74249457-74249128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:230
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):98, 12

               
               
               Conread position:98-449
               
               
               Cow position:chr2:50565692-50566049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:241
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:98-449
               
               
               Cow position:chr2:78116574-78116248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:233
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):300, 10

               
               
               Conread position:98-508
               
               
               Cow position:chr2:13604234-13604643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 10

               
               
               Conread position:110-343
               
               
               Cow position:chr2:46020684-46020912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):64, 96

               
               
               Conread position:110-359
               
               
               Cow position:chr2:39368593-39368849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):58, 92

               
               
               Conread position:110-380
               
               
               Cow position:chr2:55960829-55960567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:194
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):106, 59

               
               
               Conread position:110-397
               
               
               Cow position:chr2:33532169-33531886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:198
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):119, 76

               
               
               Conread position:110-443
               
               
               Cow position:chr2:48361346-48361681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 113

               
               
               Conread position:110-448
               
               
               Cow position:chr2:26806335-26806003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):184, 109

               
               
               Conread position:110-449
               
               
               Cow position:chr2:80275513-80275179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):234, 109

               
               
               Conread position:110-506
               
               
               Cow position:chr2:1651182-1651568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 115

               
               
               Conread position:110-506
               
               
               Cow position:chr2:38205986-38205590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 62

               
               
               Conread position:110-508
               
               
               Cow position:chr2:38362593-38362188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 113

               
               
               Conread position:111-508
               
               
               Cow position:chr2:81349105-81348704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 113

               
               
               Conread position:113-320
               
               
               Cow position:chr2:19154090-19154298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):107, 56

               
               
               Conread position:113-449
               
               
               Cow position:chr2:5300369-5300710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:231
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):61, 109

               
               
               Conread position:113-449
               
               
               Cow position:chr2:60463034-60462714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:232
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):273, 59

               
               
               Conread position:113-449
               
               
               Cow position:chr2:60468413-60468093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:233
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):273, 59

               
               
               Conread position:113-508
               
               
               Cow position:chr2:70663795-70664191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 107

               
               
               Conread position:116-449
               
               
               Cow position:chr2:36017629-36017299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:224
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):185, 83

               
               
               Conread position:116-449
               
               
               Cow position:chr2:46051518-46051197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:231
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):70, 42

               
               
               Conread position:117-413
               
               
               Cow position:chr2:78229605-78229887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):102, 55

               
               
               Conread position:117-448
               
               
               Cow position:chr2:69823373-69823704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):99, 15

               
               
               Conread position:117-450
               
               
               Cow position:chr2:56937470-56937796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:224
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):280, 74

               
               
               Conread position:117-506
               
               
               Cow position:chr2:72902505-72902117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):106, 55

               
               
               Conread position:118-396
               
               
               Cow position:chr2:19294388-19294655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:201
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):230, 54

               
               
               Conread position:118-427
               
               
               Cow position:chr2:9324779-9325092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 106

               
               
               Conread position:118-437
               
               
               Cow position:chr2:42936426-42936106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:218
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):45, 105

               
               
               Conread position:118-446
               
               
               Cow position:chr2:44232668-44232341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 50

               
               
               Conread position:118-452
               
               
               Cow position:chr2:39513813-39514153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):201, 14

               
               
               Conread position:121-434
               
               
               Cow position:chr2:29159692-29160006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:228
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):103, 136

               
               
               Conread position:124-359
               
               
               Cow position:chr2:46111592-46111348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:169
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):50, 141

               
               
               Conread position:127-449
               
               
               Cow position:chr2:46120841-46120527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:228
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):38, 103

               
               
               Conread position:128-399
               
               
               Cow position:chr2:82019326-82019062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:192
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):23, 29

               
               
               Conread position:128-508
               
               
               Cow position:chr2:39786820-39787193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:256
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):88, 12

               
               
               Conread position:133-449
               
               
               Cow position:chr2:7383879-7383574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):87, 169

               
               
               Conread position:134-434
               
               
               Cow position:chr2:43789908-43790200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:213
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):211, 38

               
               
               Conread position:135-452
               
               
               Cow position:chr2:5130645-5130336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:226
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):80, 60

               
               
               Conread position:136-300
               
               
               Cow position:chr2:17493518-17493348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):38, 87

               
               
               Conread position:137-292
               
               
               Cow position:chr2:41443211-41443365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:112
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:137-355
               
               
               Cow position:chr2:46353688-46353466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):165, 88

               
               
               Conread position:140-300
               
               
               Cow position:chr2:47152730-47152565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:140-434
               
               
               Cow position:chr2:47055715-47056007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:208
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):7, 120

               
               
               Conread position:140-485
               
               
               Cow position:chr2:17341710-17342034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):172, 80

               
               
               Conread position:141-496
               
               
               Cow position:chr2:63332003-63331635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:252
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):25, 82

               
               
               Conread position:143-369
               
               
               Cow position:chr2:39533906-39534138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):31, 104

               
               
               Conread position:146-437
               
               
               Cow position:chr2:73360291-73360010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:199
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):70, 15

               
               
               Conread position:146-448
               
               
               Cow position:chr2:16505657-16505363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):177, 15

               
               
               Conread position:146-448
               
               
               Cow position:chr2:58056885-58057173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:200
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):202, 15

               
               
               Conread position:147-364
               
               
               Cow position:chr2:80595497-80595281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:162
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):104, 73

               
               
               Conread position:147-432
               
               
               Cow position:chr2:65749481-65749753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:196
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):206, 73

               
               
               Conread position:157-448
               
               
               Cow position:chr2:13709297-13709583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):139, 171

               
               
               Conread position:157-449
               
               
               Cow position:chr2:12686961-12686675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):9, 75

               
               
               Conread position:157-449
               
               
               Cow position:chr2:61421347-61421053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 146

               
               
               Conread position:157-451
               
               
               Cow position:chr2:17328575-17328867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):191, 28

               
               
               Conread position:159-448
               
               
               Cow position:chr2:47064948-47065221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):172, 27

               
               
               Conread position:159-451
               
               
               Cow position:chr2:78249565-78249853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):190, 60

               
               
               Conread position:161-507
               
               
               Cow position:chr2:24858831-24859195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:245
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):23, 147

               
               
               Conread position:164-396
               
               
               Cow position:chr2:67313856-67313628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):185, 55

               
               
               Conread position:164-449
               
               
               Cow position:chr2:70780929-70781206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):184, 125

               
               
               Conread position:165-422
               
               
               Cow position:chr2:25448161-25448416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):18, 60

               
               
               Conread position:165-425
               
               
               Cow position:chr2:26170577-26170836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):52, 128

               
               
               Conread position:165-502
               
               
               Cow position:chr2:83410344-83410684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:248
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):225, 89

               
               
               Conread position:165-508
               
               
               Cow position:chr2:38785769-38785410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):154, 36

               
               
               Conread position:166-463
               
               
               Cow position:chr2:70305997-70306271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:208
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):263, 53

               
               
               Conread position:167-420
               
               
               Cow position:chr2:11412425-11412684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):19, 136

               
               
               Conread position:169-449
               
               
               Cow position:chr2:46119923-46119653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):179, 127

               
               
               Conread position:172-302
               
               
               Cow position:chr2:45537594-45537464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:100
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):63, 55

               
               
               Conread position:172-434
               
               
               Cow position:chr2:14218492-14218750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:181
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):120, 21

               
               
               Conread position:172-449
               
               
               Cow position:chr2:34750139-34749869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):177, 47

               
               
               Conread position:172-449
               
               
               Cow position:chr2:46247618-46247346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):177, 48

               
               
               Conread position:172-505
               
               
               Cow position:chr2:45565544-45565890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:233
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):45, 16

               
               
               Conread position:172-505
               
               
               Cow position:chr2:70495116-70495435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:231
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:172-506
               
               
               Cow position:chr2:7498423-7498746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:226
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):71, 14

               
               
               Conread position:173-448
               
               
               Cow position:chr2:65587007-65587271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):175, 63

               
               
               Conread position:173-449
               
               
               Cow position:chr2:31460488-31460220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):175, 81

               
               
               Conread position:173-457
               
               
               Cow position:chr2:56269780-56269492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:197
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):62, 128

               
               
               Conread position:174-415
               
               
               Cow position:chr2:46242745-46242500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:166
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):144, 46

               
               
               Conread position:174-449
               
               
               Cow position:chr2:46130306-46130045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):103, 44

               
               
               Conread position:174-449
               
               
               Cow position:chr2:54883311-54883579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:194
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):111, 12

               
               
               Conread position:174-507
               
               
               Cow position:chr2:19373822-19374151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:234
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):49, 12

               
               
               Conread position:175-426
               
               
               Cow position:chr2:5998790-5999039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:179
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):47, 29

               
               
               Conread position:175-449
               
               
               Cow position:chr2:41622327-41622596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):222, 47

               
               
               Conread position:175-449
               
               
               Cow position:chr2:45542551-45542284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):83, 44

               
               
               Conread position:176-449
               
               
               Cow position:chr2:72407645-72407384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:194
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):172, 8

               
               
               Conread position:176-507
               
               
               Cow position:chr2:58685223-58685554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:221
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):43, 134

               
               
               Conread position:177-361
               
               
               Cow position:chr2:76764858-76764672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):150, 42

               
               
               Conread position:177-449
               
               
               Cow position:chr2:69199469-69199206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):171, 72

               
               
               Conread position:178-471
               
               
               Cow position:chr2:56248641-56248920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:219
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):94, 21

               
               
               Conread position:180-449
               
               
               Cow position:chr2:78530208-78529944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):148, 100

               
               
               Conread position:180-508
               
               
               Cow position:chr2:20916137-20915823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:229
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):226, 38

               
               
               Conread position:190-442
               
               
               Cow position:chr2:46052366-46052607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:171
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):159, 38

               
               
               Conread position:190-506
               
               
               Cow position:chr2:82054984-82054671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:228
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):53, 30

               
               
               Conread position:191-506
               
               
               Cow position:chr2:19156325-19155996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:224
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):25, 101

               
               
               Conread position:192-434
               
               
               Cow position:chr2:43907324-43907089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:163
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):156, 89

               
               
               Conread position:192-447
               
               
               Cow position:chr2:54967867-54968120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):77, 115

               
               
               Conread position:192-449
               
               
               Cow position:chr2:39335004-39334756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):205, 27

               
               
               Conread position:192-455
               
               
               Cow position:chr2:44025233-44025498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:195
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):37, 183

               
               
               Conread position:193-404
               
               
               Cow position:chr2:17805901-17805693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):156, 25

               
               
               Conread position:193-432
               
               
               Cow position:chr2:12682799-12682565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):32, 79

               
               
               Conread position:193-508
               
               
               Cow position:chr2:51027824-51028127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:230
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):115, 27

               
               
               Conread position:193-508
               
               
               Cow position:chr2:62309566-62309264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:208
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):58, 27

               
               
               Conread position:194-507
               
               
               Cow position:chr2:15166060-15166350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:221
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):203, 25

               
               
               Conread position:196-440
               
               
               Cow position:chr2:80769983-80770221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:170
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):149, 23

               
               
               Conread position:196-448
               
               
               Cow position:chr2:39597828-39598076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):149, 29

               
               
               Conread position:196-472
               
               
               Cow position:chr2:50793607-50793884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:207
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):32, 24

               
               
               Conread position:197-422
               
               
               Cow position:chr2:45281518-45281737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:162
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):151, 7

               
               
               Conread position:197-450
               
               
               Cow position:chr2:6901644-6901892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):151, 97

               
               
               Conread position:198-397
               
               
               Cow position:chr2:13035982-13036180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:140
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):33, 103

               
               
               Conread position:198-420
               
               
               Cow position:chr2:69367263-69367041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):18, 94

               
               
               Conread position:198-447
               
               
               Cow position:chr2:54810987-54810742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):151, 21

               
               
               Conread position:198-508
               
               
               Cow position:chr2:56753025-56752729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:222
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):88, 27

               
               
               Conread position:199-443
               
               
               Cow position:chr2:39237286-39237521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):149, 25

               
               
               Conread position:199-449
               
               
               Cow position:chr2:44004825-44005070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):149, 8

               
               
               Conread position:201-448
               
               
               Cow position:chr2:42293121-42293364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):58, 21

               
               
               Conread position:201-448
               
               
               Cow position:chr2:58135526-58135278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:180
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):14, 75

               
               
               Conread position:201-480
               
               
               Cow position:chr2:76861592-76861314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:204
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):107, 246

               
               
               Conread position:202-508
               
               
               Cow position:chr2:46137284-46136980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:212
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):73, 17

               
               
               Conread position:203-447
               
               
               Cow position:chr2:17410133-17409894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):145, 88

               
               
               Conread position:205-423
               
               
               Cow position:chr2:64131296-64131507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):192, 14

               
               
               Conread position:206-432
               
               
               Cow position:chr2:26879955-26880180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:169
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):16, 91

               
               
               Conread position:207-447
               
               
               Cow position:chr2:39228683-39228923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:170
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):102, 168

               
               
               Conread position:209-372
               
               
               Cow position:chr2:69828957-69828799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:123
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):139, 61

               
               
               Conread position:209-484
               
               
               Cow position:chr2:12051027-12051304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:205
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):16, 107

               
               
               Conread position:212-449
               
               
               Cow position:chr2:30351820-30351591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):136, 8

               
               
               Conread position:213-449
               
               
               Cow position:chr2:44022925-44022691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):135, 36

               
               
               Conread position:215-434
               
               
               Cow position:chr2:55062769-55062977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):133, 91

               
               
               Conread position:217-434
               
               
               Cow position:chr2:29734708-29734919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):132, 79

               
               
               Conread position:218-490
               
               
               Cow position:chr2:304498-304228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:190
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):16, 37

               
               
               Conread position:220-448
               
               
               Cow position:chr2:55496398-55496182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):128, 51

               
               
               Conread position:221-448
               
               
               Cow position:chr2:43123227-43123453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:166
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):124, 86

               
               
               Conread position:223-508
               
               
               Cow position:chr2:74964373-74964640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):12, 40

               
               
               Conread position:224-408
               
               
               Cow position:chr2:25967001-25966817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):104, 75

               
               
               Conread position:224-434
               
               
               Cow position:chr2:387882-387675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:153
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):121, 72

               
               
               Conread position:224-448
               
               
               Cow position:chr2:13935601-13935821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):124, 40

               
               
               Conread position:224-448
               
               
               Cow position:chr2:33988421-33988202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):124, 75

               
               
               Conread position:224-449
               
               
               Cow position:chr2:14626474-14626706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):75, 46

               
               
               Conread position:224-450
               
               
               Cow position:chr2:48635152-48634929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:160
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):121, 67

               
               
               Conread position:227-440
               
               
               Cow position:chr2:77281915-77282125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:151
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):121, 77

               
               
               Conread position:227-445
               
               
               Cow position:chr2:22113807-22113586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):121, 205

               
               
               Conread position:227-449
               
               
               Cow position:chr2:19137998-19137775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:170
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):118, 75

               
               
               Conread position:227-451
               
               
               Cow position:chr2:44222717-44222941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:157
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):118, 77

               
               
               Conread position:227-508
               
               
               Cow position:chr2:53497017-53496745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):16, 33

               
               
               Conread position:228-447
               
               
               Cow position:chr2:67386583-67386361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):112, 74

               
               
               Conread position:228-508
               
               
               Cow position:chr2:46971015-46971299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:195
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):120, 74

               
               
               Conread position:232-440
               
               
               Cow position:chr2:39672852-39672642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):101, 72

               
               
               Conread position:232-508
               
               
               Cow position:chr2:78197773-78198042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):117, 68

               
               
               Conread position:236-448
               
               
               Cow position:chr2:68870598-68870804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):112, 32

               
               
               Conread position:236-449
               
               
               Cow position:chr2:39663278-39663483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):74, 60

               
               
               Conread position:236-449
               
               
               Cow position:chr2:40410045-40410261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):83, 66

               
               
               Conread position:236-506
               
               
               Cow position:chr2:31113752-31114004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):113, 70

               
               
               Conread position:237-449
               
               
               Cow position:chr2:40257510-40257297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):112, 83

               
               
               Conread position:237-508
               
               
               Cow position:chr2:65036378-65036102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:195
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):112, 38

               
               
               Conread position:242-448
               
               
               Cow position:chr2:8843917-8843715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):106, 54

               
               
               Conread position:242-504
               
               
               Cow position:chr2:24106303-24106560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:182
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):103, 60

               
               
               Conread position:242-505
               
               
               Cow position:chr2:73999636-73999892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:179
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):107, 43

               
               
               Conread position:243-397
               
               
               Cow position:chr2:8797949-8798102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:118
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):106, 51

               
               
               Conread position:243-427
               
               
               Cow position:chr2:52747410-52747227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):107, 59

               
               
               Conread position:243-448
               
               
               Cow position:chr2:48130532-48130734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:153
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):102, 51

               
               
               Conread position:243-449
               
               
               Cow position:chr2:15348302-15348508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):105, 59

               
               
               Conread position:244-508
               
               
               Cow position:chr2:24530285-24530555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):104, 34

               
               
               Conread position:245-423
               
               
               Cow position:chr2:68655224-68655396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):100, 11

               
               
               Conread position:245-508
               
               
               Cow position:chr2:58479763-58479499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):104, 53

               
               
               Conread position:248-434
               
               
               Cow position:chr2:72310089-72309911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):100, 48

               
               
               Conread position:248-449
               
               
               Cow position:chr2:40597490-40597684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:149
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):100, 126

               
               
               Conread position:248-449
               
               
               Cow position:chr2:73790081-73789876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):63, 51

               
               
               Conread position:248-484
               
               
               Cow position:chr2:14734026-14734255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:186
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):101, 52

               
               
               Conread position:249-449
               
               
               Cow position:chr2:13271501-13271304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):148, 49

               
               
               Conread position:250-426
               
               
               Cow position:chr2:9098799-9098622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):78, 42

               
               
               Conread position:250-434
               
               
               Cow position:chr2:7947226-7947044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:134
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):98, 51

               
               
               Conread position:250-449
               
               
               Cow position:chr2:19502561-19502370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):149, 19

               
               
               Conread position:250-449
               
               
               Cow position:chr2:39798157-39798357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:140
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):99, 50

               
               
               Conread position:250-452
               
               
               Cow position:chr2:29859928-29860120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):147, 54

               
               
               Conread position:250-508
               
               
               Cow position:chr2:20250626-20250880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:193
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):66, 52

               
               
               Conread position:254-423
               
               
               Cow position:chr2:12198984-12198820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:131
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):65, 17

               
               
               Conread position:254-448
               
               
               Cow position:chr2:60429201-60429394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:150
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):94, 17

               
               
               Conread position:258-412
               
               
               Cow position:chr2:73386922-73386768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:114
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):87, 64

               
               
               Conread position:258-449
               
               
               Cow position:chr2:46383539-46383351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:142
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):91, 41

               
               
               Conread position:258-508
               
               
               Cow position:chr2:33596743-33596478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:176
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:259-420
               
               
               Cow position:chr2:39223576-39223743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:259-427
               
               
               Cow position:chr2:12840116-12839949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):89, 26

               
               
               Conread position:259-473
               
               
               Cow position:chr2:15162669-15162882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):78, 63

               
               
               Conread position:259-485
               
               
               Cow position:chr2:16018305-16018077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):17, 48

               
               
               Conread position:262-383
               
               
               Cow position:chr2:52081952-52081832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:99
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):32, 37

               
               
               Conread position:264-433
               
               
               Cow position:chr2:39802380-39802212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):85, 38

               
               
               Conread position:266-503
               
               
               Cow position:chr2:2937502-2937726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:267-434
               
               
               Cow position:chr2:46124768-46124604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:128
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):81, 40

               
               
               Conread position:267-506
               
               
               Cow position:chr2:19062108-19062339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):132, 35

               
               
               Conread position:268-449
               
               
               Cow position:chr2:22042471-22042656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):77, 25

               
               
               Conread position:268-508
               
               
               Cow position:chr2:51769541-51769781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:170
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):81, 55

               
               
               Conread position:268-508
               
               
               Cow position:chr2:80177653-80177406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):81, 26

               
               
               Conread position:271-508
               
               
               Cow position:chr2:46161893-46162144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:178
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):78, 31

               
               
               Conread position:271-508
               
               
               Cow position:chr2:53501097-53500854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:179
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):78, 35

               
               
               Conread position:272-508
               
               
               Cow position:chr2:64213002-64213234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:174
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):76, 100

               
               
               Conread position:273-434
               
               
               Cow position:chr2:39544863-39544700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):76, 33

               
               
               Conread position:274-494
               
               
               Cow position:chr2:29032655-29032867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:155
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):125, 27

               
               
               Conread position:278-507
               
               
               Cow position:chr2:13013035-13013269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):70, 27

               
               
               Conread position:290-450
               
               
               Cow position:chr2:50914062-50913900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:126
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):35, 81

               
               
               Conread position:291-508
               
               
               Cow position:chr2:54253336-54253553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:166
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):59, 10

               
               
               Conread position:295-449
               
               
               Cow position:chr2:15219073-15219228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):53, 25

               
               
               Conread position:297-448
               
               
               Cow position:chr2:21671479-21671629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:114
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):51, 28

               
               
               Conread position:299-432
               
               
               Cow position:chr2:44216398-44216531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:104
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):49, 17

               
               
               Conread position:299-480
               
               
               Cow position:chr2:70464401-70464577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):48, 25

               
               
               Conread position:302-443
               
               
               Cow position:chr2:34474332-34474187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:109
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:303-449
               
               
               Cow position:chr2:71486745-71486893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:304-447
               
               
               Cow position:chr2:60368286-60368429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:109
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):44, 16

               
               
               Conread position:304-449
               
               
               Cow position:chr2:2827711-2827856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):44, 121

               
               
               Conread position:305-448
               
               
               Cow position:chr2:4921962-4921819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):44, 60

               
               
               Conread position:307-449
               
               
               Cow position:chr2:64773356-64773500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:117
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:308-508
               
               
               Cow position:chr2:45138463-45138251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):37, 80

               
               
               Conread position:309-506
               
               
               Cow position:chr2:50591751-50591953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):9, 15

               
               
               Conread position:311-449
               
               
               Cow position:chr2:24722296-24722156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:110
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):22, 14

               
               
               Conread position:313-451
               
               
               Cow position:chr2:57802512-57802372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:105
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:317-504
               
               
               Cow position:chr2:46783498-46783685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):34, 8

               
               
               Conread position:317-508
               
               
               Cow position:chr2:62384701-62384509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):32, 6

               
               
               Conread position:325-469
               
               
               Cow position:chr2:56797079-56796934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:117
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):24, 94

               
               
               Conread position:327-508
               
               
               Cow position:chr2:45640878-45641064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:136
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):21, 72

               
               
               Conread position:327-508
               
               
               Cow position:chr2:68982019-68981836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:328-505
               
               
               Cow position:chr2:70746756-70746937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):69, 17

               
               
               Conread position:328-506
               
               
               Cow position:chr2:25084680-25084857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):12, 95

               
               
               Conread position:328-508
               
               
               Cow position:chr2:77208957-77209130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):71, 16

               
               
               Conread position:330-449
               
               
               Cow position:chr2:46053464-46053585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:95
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:344-508
               
               
               Cow position:chr2:56884430-56884593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:122
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):53, 79

               
               
               Conread position:345-508
               
               
               Cow position:chr2:61186899-61186743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:121
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):19, 101

               
               
               Conread position:346-499
               
               
               Cow position:chr2:1435631-1435781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:115
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):98, 36

               
               
               Conread position:346-508
               
               
               Cow position:chr2:8245527-8245692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:346-508
               
               
               Cow position:chr2:36998146-36998308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:121
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):54, 105

               
               
               Conread position:346-508
               
               
               Cow position:chr2:64973441-64973603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):57, 11

               
               
               Conread position:352-508
               
               
               Cow position:chr2:38619030-38618869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:123
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:352-508
               
               
               Cow position:chr2:40272938-40273092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:353-508
               
               
               Cow position:chr2:2690049-2690206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):46, 129

               
               
               Conread position:355-508
               
               
               Cow position:chr2:51041595-51041440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:115
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:355-508
               
               
               Cow position:chr2:61181648-61181803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:123
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):44, 91

               
               
               Conread position:11-298
               
               
               Cow position:chr20:12808721-12808993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:200
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):57, 26

               
               
               Conread position:11-363
               
               
               Cow position:chr20:17903879-17904229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 57

               
               
               Conread position:12-298
               
               
               Cow position:chr20:19352040-19351744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:217
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):87, 58

               
               
               Conread position:15-367
               
               
               Cow position:chr20:13450688-13450333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:227
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):102, 291

               
               
               Conread position:16-296
               
               
               Cow position:chr20:5104709-5104434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 154

               
               
               Conread position:16-300
               
               
               Cow position:chr20:12334108-12334386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:208
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):93, 8

               
               
               Conread position:16-302
               
               
               Cow position:chr20:17734044-17733762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):155, 34

               
               
               Conread position:16-311
               
               
               Cow position:chr20:38028268-38027992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):155, 49

               
               
               Conread position:16-313
               
               
               Cow position:chr20:15577166-15576865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 38

               
               
               Conread position:16-314
               
               
               Cow position:chr20:10919590-10919288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):88, 286

               
               
               Conread position:16-318
               
               
               Cow position:chr20:22920435-22920140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:208
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):93, 139

               
               
               Conread position:16-321
               
               
               Cow position:chr20:18399486-18399793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 277

               
               
               Conread position:16-327
               
               
               Cow position:chr20:21324839-21325150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:229
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):49, 176

               
               
               Conread position:16-328
               
               
               Cow position:chr20:18413583-18413892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:225
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):85, 16

               
               
               Conread position:16-332
               
               
               Cow position:chr20:10468799-10469109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:216
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):93, 38

               
               
               Conread position:16-343
               
               
               Cow position:chr20:3781706-3781374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:228
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):51, 210

               
               
               Conread position:16-346
               
               
               Cow position:chr20:24002054-24002368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:226
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):95, 45

               
               
               Conread position:16-361
               
               
               Cow position:chr20:18185304-18185635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 139

               
               
               Conread position:16-363
               
               
               Cow position:chr20:18100144-18100478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:248
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):93, 108

               
               
               Conread position:16-367
               
               
               Cow position:chr20:33540603-33540955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:227
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):93, 271

               
               
               Conread position:16-373
               
               
               Cow position:chr20:21720502-21720861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:233
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):83, 250

               
               
               Conread position:16-373
               
               
               Cow position:chr20:26349295-26349654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:231
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):101, 276

               
               
               Conread position:16-373
               
               
               Cow position:chr20:34458308-34457951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:234
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):101, 250

               
               
               Conread position:16-377
               
               
               Cow position:chr20:9473888-9473530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 24

               
               
               Conread position:16-382
               
               
               Cow position:chr20:6571057-6571425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 152

               
               
               Conread position:16-399
               
               
               Cow position:chr20:6258338-6257953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 208

               
               
               Conread position:16-399
               
               
               Cow position:chr20:6549743-6549373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:246
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):93, 50

               
               
               Conread position:16-411
               
               
               Cow position:chr20:8429473-8429866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):158, 48

               
               
               Conread position:16-415
               
               
               Cow position:chr20:16715129-16715515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 11

               
               
               Conread position:16-419
               
               
               Cow position:chr20:38123610-38124014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 95

               
               
               Conread position:16-426
               
               
               Cow position:chr20:4621615-4621220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 26

               
               
               Conread position:16-430
               
               
               Cow position:chr20:35797331-35797747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 194

               
               
               Conread position:16-434
               
               
               Cow position:chr20:23792329-23792746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 212

               
               
               Conread position:16-434
               
               
               Cow position:chr20:36780005-36779587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 173

               
               
               Conread position:16-440
               
               
               Cow position:chr20:8577972-8578397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):158, 24

               
               
               Conread position:16-447
               
               
               Cow position:chr20:6096760-6096340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 118

               
               
               Conread position:16-448
               
               
               Cow position:chr20:13652639-13652211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):110, 54

               
               
               Conread position:16-448
               
               
               Cow position:chr20:26076813-26077238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 45

               
               
               Conread position:16-448
               
               
               Cow position:chr20:39728176-39728607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 62

               
               
               Conread position:16-449
               
               
               Cow position:chr20:581203-580763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 212

               
               
               Conread position:16-449
               
               
               Cow position:chr20:3599667-3599241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 209

               
               
               Conread position:16-449
               
               
               Cow position:chr20:6240804-6240364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 213

               
               
               Conread position:16-449
               
               
               Cow position:chr20:9412221-9412645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):333, 92

               
               
               Conread position:16-449
               
               
               Cow position:chr20:17251436-17251874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 93

               
               
               Conread position:16-449
               
               
               Cow position:chr20:18392514-18392114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 38

               
               
               Conread position:16-449
               
               
               Cow position:chr20:19236816-19237232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):382, 22

               
               
               Conread position:16-449
               
               
               Cow position:chr20:19751037-19751464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 17

               
               
               Conread position:16-449
               
               
               Cow position:chr20:20967082-20967478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):332, 38

               
               
               Conread position:16-449
               
               
               Cow position:chr20:20983750-20984149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):332, 38

               
               
               Conread position:16-449
               
               
               Cow position:chr20:21345127-21345590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 163

               
               
               Conread position:16-449
               
               
               Cow position:chr20:23871090-23870662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 208

               
               
               Conread position:16-449
               
               
               Cow position:chr20:29844770-29845207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 181

               
               
               Conread position:16-449
               
               
               Cow position:chr20:39415480-39415907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:292
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):158, 12

               
               
               Conread position:16-451
               
               
               Cow position:chr20:19459917-19459506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:297
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):269, 14

               
               
               Conread position:16-451
               
               
               Cow position:chr20:21714477-21714927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 50

               
               
               Conread position:16-452
               
               
               Cow position:chr20:33144828-33144391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 94

               
               
               Conread position:16-455
               
               
               Cow position:chr20:6054780-6054346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 29

               
               
               Conread position:16-459
               
               
               Cow position:chr20:7110393-7109955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 209

               
               
               Conread position:16-469
               
               
               Cow position:chr20:24069540-24069981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 71

               
               
               Conread position:16-497
               
               
               Cow position:chr20:6423690-6424177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 54

               
               
               Conread position:16-499
               
               
               Cow position:chr20:30817261-30817746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:493
               
               
               Alignm identity:314
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):32, 159

               
               
               Conread position:16-499
               
               
               Cow position:chr20:34001667-34001192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:492
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 25

               
               
               Conread position:16-504
               
               
               Cow position:chr20:33170146-33169642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 45

               
               
               Conread position:16-505
               
               
               Cow position:chr20:35145732-35146245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:520
               
               
               Alignm identity:353
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 306

               
               
               Conread position:16-507
               
               
               Cow position:chr20:746685-747165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:325
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):200, 66

               
               
               Conread position:16-507
               
               
               Cow position:chr20:18530171-18530649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:497
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 206

               
               
               Conread position:16-508
               
               
               Cow position:chr20:14806610-14807117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:513
               
               
               Alignm identity:353
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 32

               
               
               Conread position:16-508
               
               
               Cow position:chr20:19363637-19363153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:498
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 137

               
               
               Conread position:16-508
               
               
               Cow position:chr20:38817741-38818223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:329
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):89, 45

               
               
               Conread position:17-300
               
               
               Cow position:chr20:23679421-23679137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 177

               
               
               Conread position:17-361
               
               
               Cow position:chr20:15761221-15760881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):97, 53

               
               
               Conread position:17-396
               
               
               Cow position:chr20:19146596-19146981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 280

               
               
               Conread position:17-412
               
               
               Cow position:chr20:21019291-21019686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 142

               
               
               Conread position:17-442
               
               
               Cow position:chr20:20202942-20203371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 204

               
               
               Conread position:17-448
               
               
               Cow position:chr20:31746897-31746480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:287
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):380, 140

               
               
               Conread position:17-449
               
               
               Cow position:chr20:9536863-9537289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 37

               
               
               Conread position:17-452
               
               
               Cow position:chr20:12996283-12995846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 179

               
               
               Conread position:17-500
               
               
               Cow position:chr20:9433328-9433808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:499
               
               
               Alignm identity:357
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):331, 90

               
               
               Conread position:17-508
               
               
               Cow position:chr20:33435436-33434925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:521
               
               
               Alignm identity:360
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):116, 44

               
               
               Conread position:17-508
               
               
               Cow position:chr20:33532036-33532524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:505
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 24

               
               
               Conread position:18-303
               
               
               Cow position:chr20:22445909-22445624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 204

               
               
               Conread position:18-368
               
               
               Cow position:chr20:5077924-5078273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:247
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):94, 25

               
               
               Conread position:18-378
               
               
               Cow position:chr20:20201719-20202077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:251
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):91, 116

               
               
               Conread position:18-397
               
               
               Cow position:chr20:11176520-11176143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:260
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):97, 212

               
               
               Conread position:18-408
               
               
               Cow position:chr20:22313433-22313044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 127

               
               
               Conread position:18-432
               
               
               Cow position:chr20:13821855-13821439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):154, 91

               
               
               Conread position:18-449
               
               
               Cow position:chr20:22959616-22959191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 14

               
               
               Conread position:18-449
               
               
               Cow position:chr20:34202374-34202792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 174

               
               
               Conread position:18-506
               
               
               Cow position:chr20:12582220-12581724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 145

               
               
               Conread position:19-363
               
               
               Cow position:chr20:7132076-7132420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:238
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):83, 279

               
               
               Conread position:20-390
               
               
               Cow position:chr20:35958378-35958745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):328, 74

               
               
               Conread position:22-401
               
               
               Cow position:chr20:10884635-10884250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:266
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):77, 269

               
               
               Conread position:22-452
               
               
               Cow position:chr20:398562-398147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:288
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):87, 47

               
               
               Conread position:23-382
               
               
               Cow position:chr20:13967528-13967167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 153

               
               
               Conread position:25-508
               
               
               Cow position:chr20:25686619-25686132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:493
               
               
               Alignm identity:355
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 36

               
               
               Conread position:26-508
               
               
               Cow position:chr20:9707159-9706703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:488
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 35

               
               
               Conread position:27-432
               
               
               Cow position:chr20:31799457-31799064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:264
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):207, 19

               
               
               Conread position:27-508
               
               
               Cow position:chr20:7659473-7658991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:495
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):312, 67

               
               
               Conread position:31-448
               
               
               Cow position:chr20:5950889-5950487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:283
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):76, 30

               
               
               Conread position:38-508
               
               
               Cow position:chr20:35843362-35842913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 23

               
               
               Conread position:39-303
               
               
               Cow position:chr20:27314430-27314690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:181
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):70, 84

               
               
               Conread position:54-449
               
               
               Cow position:chr20:10200104-10200503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 203

               
               
               Conread position:54-508
               
               
               Cow position:chr20:6903092-6903528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):295, 118

               
               
               Conread position:55-356
               
               
               Cow position:chr20:20312973-20312684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:221
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):54, 100

               
               
               Conread position:56-430
               
               
               Cow position:chr20:15549136-15548759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 170

               
               
               Conread position:56-508
               
               
               Cow position:chr20:40256734-40257184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 98

               
               
               Conread position:57-370
               
               
               Cow position:chr20:27977943-27977626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:211
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):52, 9

               
               
               Conread position:58-397
               
               
               Cow position:chr20:3331527-3331181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:238
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):51, 243

               
               
               Conread position:60-508
               
               
               Cow position:chr20:40511987-40511538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 7

               
               
               Conread position:63-432
               
               
               Cow position:chr20:32578148-32577782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:258
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):36, 82

               
               
               Conread position:65-508
               
               
               Cow position:chr20:14679392-14679832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 62

               
               
               Conread position:65-508
               
               
               Cow position:chr20:20360002-20359568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 134

               
               
               Conread position:66-292
               
               
               Cow position:chr20:17363913-17363684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:171
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):170, 13

               
               
               Conread position:66-399
               
               
               Cow position:chr20:39019471-39019802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:226
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):45, 146

               
               
               Conread position:66-434
               
               
               Cow position:chr20:3321360-3321002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 29

               
               
               Conread position:66-449
               
               
               Cow position:chr20:21372090-21372465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 161

               
               
               Conread position:66-508
               
               
               Cow position:chr20:29805882-29805443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):124, 42

               
               
               Conread position:70-346
               
               
               Cow position:chr20:24391766-24392031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):104, 42

               
               
               Conread position:70-399
               
               
               Cow position:chr20:35009961-35009630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:235
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):39, 22

               
               
               Conread position:70-434
               
               
               Cow position:chr20:26996313-26996671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):104, 38

               
               
               Conread position:70-434
               
               
               Cow position:chr20:34597329-34596955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 129

               
               
               Conread position:70-470
               
               
               Cow position:chr20:10759686-10759294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 83

               
               
               Conread position:70-498
               
               
               Cow position:chr20:4205742-4206181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 156

               
               
               Conread position:70-505
               
               
               Cow position:chr20:25823063-25823489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:299
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):104, 53

               
               
               Conread position:71-343
               
               
               Cow position:chr20:29633211-29632950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:193
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):38, 95

               
               
               Conread position:71-379
               
               
               Cow position:chr20:14735457-14735755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:216
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):40, 150

               
               
               Conread position:71-423
               
               
               Cow position:chr20:35897298-35897653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:240
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):40, 151

               
               
               Conread position:71-448
               
               
               Cow position:chr20:34776966-34777336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 109

               
               
               Conread position:71-451
               
               
               Cow position:chr20:7442344-7441979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 110

               
               
               Conread position:71-496
               
               
               Cow position:chr20:10838439-10838012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):105, 158

               
               
               Conread position:71-508
               
               
               Cow position:chr20:14759884-14759440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 135

               
               
               Conread position:72-343
               
               
               Cow position:chr20:6848403-6848680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:195
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):40, 189

               
               
               Conread position:72-508
               
               
               Cow position:chr20:14879567-14880020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 154

               
               
               Conread position:73-434
               
               
               Cow position:chr20:17845742-17846101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 128

               
               
               Conread position:76-297
               
               
               Cow position:chr20:9379194-9379417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:169
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:76-338
               
               
               Cow position:chr20:26469278-26469018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):22, 34

               
               
               Conread position:76-426
               
               
               Cow position:chr20:28296075-28296429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:243
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):33, 218

               
               
               Conread position:77-308
               
               
               Cow position:chr20:26679910-26680145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:170
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):28, 38

               
               
               Conread position:77-388
               
               
               Cow position:chr20:22704074-22704390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 148

               
               
               Conread position:77-396
               
               
               Cow position:chr20:6890491-6890817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:237
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):26, 185

               
               
               Conread position:77-451
               
               
               Cow position:chr20:11482353-11481976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 223

               
               
               Conread position:78-343
               
               
               Cow position:chr20:23936628-23936355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:193
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):56, 31

               
               
               Conread position:78-422
               
               
               Cow position:chr20:20471577-20471913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:250
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):21, 61

               
               
               Conread position:80-396
               
               
               Cow position:chr20:23505618-23505931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:218
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):29, 128

               
               
               Conread position:82-370
               
               
               Cow position:chr20:11923449-11923171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:207
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):24, 74

               
               
               Conread position:82-379
               
               
               Cow position:chr20:33176973-33177279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):27, 106

               
               
               Conread position:84-420
               
               
               Cow position:chr20:38551167-38551496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:240
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):22, 69

               
               
               Conread position:85-508
               
               
               Cow position:chr20:24869234-24868804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:300
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):30, 140

               
               
               Conread position:88-357
               
               
               Cow position:chr20:9923396-9923646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):260, 57

               
               
               Conread position:89-350
               
               
               Cow position:chr20:34240326-34240595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):81, 24

               
               
               Conread position:89-448
               
               
               Cow position:chr20:33178728-33178362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 139

               
               
               Conread position:95-440
               
               
               Cow position:chr20:11542478-11542139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 78

               
               
               Conread position:95-448
               
               
               Cow position:chr20:28067621-28067268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 146

               
               
               Conread position:95-449
               
               
               Cow position:chr20:23846868-23846507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 104

               
               
               Conread position:96-318
               
               
               Cow position:chr20:8020700-8020925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):9, 129

               
               
               Conread position:96-346
               
               
               Cow position:chr20:37272524-37272767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:173
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):71, 13

               
               
               Conread position:96-449
               
               
               Cow position:chr20:20739484-20739130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:253
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):13, 92

               
               
               Conread position:98-448
               
               
               Cow position:chr20:6602848-6603197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 81

               
               
               Conread position:98-507
               
               
               Cow position:chr20:34107923-34108322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 38

               
               
               Conread position:100-467
               
               
               Cow position:chr20:25274467-25274118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:256
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):42, 13

               
               
               Conread position:107-504
               
               
               Cow position:chr20:31080862-31081251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):289, 26

               
               
               Conread position:110-451
               
               
               Cow position:chr20:36207623-36207973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:236
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):63, 112

               
               
               Conread position:112-485
               
               
               Cow position:chr20:30648395-30648008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 119

               
               
               Conread position:113-449
               
               
               Cow position:chr20:14980691-14980349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 116

               
               
               Conread position:117-397
               
               
               Cow position:chr20:3740172-3739900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:191
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):112, 151

               
               
               Conread position:119-451
               
               
               Cow position:chr20:21928734-21929064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 190

               
               
               Conread position:120-368
               
               
               Cow position:chr20:28831794-28832047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:180
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):31, 181

               
               
               Conread position:120-449
               
               
               Cow position:chr20:41627515-41627184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:217
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):40, 47

               
               
               Conread position:121-440
               
               
               Cow position:chr20:7210867-7211182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:210
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):13, 103

               
               
               Conread position:122-449
               
               
               Cow position:chr20:5814401-5814723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:232
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):7, 126

               
               
               Conread position:122-452
               
               
               Cow position:chr20:14100605-14100275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:232
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):29, 64

               
               
               Conread position:126-451
               
               
               Cow position:chr20:40446172-40446488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:219
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):99, 21

               
               
               Conread position:126-505
               
               
               Cow position:chr20:15312496-15312882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:270
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):48, 97

               
               
               Conread position:129-321
               
               
               Cow position:chr20:9701735-9701545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:133
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:131-403
               
               
               Cow position:chr20:32988990-32988720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):122, 38

               
               
               Conread position:132-373
               
               
               Cow position:chr20:18837318-18837076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:137
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):42, 92

               
               
               Conread position:134-449
               
               
               Cow position:chr20:5636325-5636638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 90

               
               
               Conread position:136-508
               
               
               Cow position:chr20:1575946-1576308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):244, 84

               
               
               Conread position:139-508
               
               
               Cow position:chr20:28441176-28441553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:251
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):35, 84

               
               
               Conread position:140-506
               
               
               Cow position:chr20:8261758-8262127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:261
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):34, 107

               
               
               Conread position:141-505
               
               
               Cow position:chr20:4334669-4334307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 32

               
               
               Conread position:141-505
               
               
               Cow position:chr20:14917152-14917502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:247
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):207, 78

               
               
               Conread position:143-499
               
               
               Cow position:chr20:14540206-14540552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):206, 104

               
               
               Conread position:146-441
               
               
               Cow position:chr20:14433571-14433272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:205
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):70, 157

               
               
               Conread position:146-447
               
               
               Cow position:chr20:9267239-9266952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):205, 15

               
               
               Conread position:148-419
               
               
               Cow position:chr20:24234019-24234281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:190
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):47, 83

               
               
               Conread position:149-443
               
               
               Cow position:chr20:36040333-36040626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:212
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):77, 11

               
               
               Conread position:150-338
               
               
               Cow position:chr20:11355079-11355264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):104, 54

               
               
               Conread position:153-448
               
               
               Cow position:chr20:34178613-34178322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:200
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):33, 70

               
               
               Conread position:154-430
               
               
               Cow position:chr20:28955833-28955563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:200
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):61, 6

               
               
               Conread position:156-506
               
               
               Cow position:chr20:311210-311535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):193, 64

               
               
               Conread position:157-398
               
               
               Cow position:chr20:23643266-23643033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:161
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):191, 15

               
               
               Conread position:157-411
               
               
               Cow position:chr20:32523333-32523583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):72, 30

               
               
               Conread position:157-412
               
               
               Cow position:chr20:8098149-8098406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):9, 137

               
               
               Conread position:157-426
               
               
               Cow position:chr20:21761644-21761909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):191, 74

               
               
               Conread position:157-446
               
               
               Cow position:chr20:22484728-22485013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 142

               
               
               Conread position:157-449
               
               
               Cow position:chr20:4332006-4332291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):69, 48

               
               
               Conread position:157-505
               
               
               Cow position:chr20:5025075-5024735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:230
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):72, 29

               
               
               Conread position:161-422
               
               
               Cow position:chr20:29404304-29404044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:194
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):187, 59

               
               
               Conread position:163-393
               
               
               Cow position:chr20:28804439-28804670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:175
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):118, 15

               
               
               Conread position:164-415
               
               
               Cow position:chr20:34084938-34085191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:174
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):27, 138

               
               
               Conread position:165-506
               
               
               Cow position:chr20:13494388-13494720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:231
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):7, 13

               
               
               Conread position:169-503
               
               
               Cow position:chr20:15569066-15568734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:239
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):179, 115

               
               
               Conread position:170-415
               
               
               Cow position:chr20:13794870-13795100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):149, 52

               
               
               Conread position:172-365
               
               
               Cow position:chr20:27003852-27003652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:145
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:172-427
               
               
               Cow position:chr20:40449893-40450157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):30, 96

               
               
               Conread position:172-447
               
               
               Cow position:chr20:36633700-36633967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):43, 131

               
               
               Conread position:172-464
               
               
               Cow position:chr20:24833977-24834261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):177, 48

               
               
               Conread position:172-508
               
               
               Cow position:chr20:23234918-23235246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:234
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):70, 48

               
               
               Conread position:174-426
               
               
               Cow position:chr20:34221365-34221613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):59, 74

               
               
               Conread position:174-447
               
               
               Cow position:chr20:28249068-28249335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:187
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):42, 108

               
               
               Conread position:174-449
               
               
               Cow position:chr20:11188920-11188650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):38, 131

               
               
               Conread position:175-424
               
               
               Cow position:chr20:12430908-12430667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):168, 18

               
               
               Conread position:175-485
               
               
               Cow position:chr20:40691942-40692255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:211
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):118, 285

               
               
               Conread position:175-508
               
               
               Cow position:chr20:37028706-37029037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:229
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):18, 23

               
               
               Conread position:176-390
               
               
               Cow position:chr20:34901459-34901669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:162
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):169, 10

               
               
               Conread position:176-397
               
               
               Cow position:chr20:24000911-24000693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:161
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):46, 12

               
               
               Conread position:176-448
               
               
               Cow position:chr20:19339986-19339725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:188
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):78, 45

               
               
               Conread position:179-433
               
               
               Cow position:chr20:10188165-10188414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):169, 43

               
               
               Conread position:179-508
               
               
               Cow position:chr20:4016144-4016466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:205
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):224, 117

               
               
               Conread position:184-508
               
               
               Cow position:chr20:26077762-26077458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:226
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):167, 35

               
               
               Conread position:189-389
               
               
               Cow position:chr20:21698287-21698490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:164
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):156, 115

               
               
               Conread position:192-508
               
               
               Cow position:chr20:7738323-7738000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:218
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):203, 27

               
               
               Conread position:192-508
               
               
               Cow position:chr20:23103123-23103426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:221
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):152, 27

               
               
               Conread position:193-427
               
               
               Cow position:chr20:33067469-33067225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:193-449
               
               
               Cow position:chr20:24711739-24711998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):155, 0

               
               
               Conread position:193-503
               
               
               Cow position:chr20:22265341-22265038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:216
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):204, 26

               
               
               Conread position:198-397
               
               
               Cow position:chr20:15118185-15118380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):27, 94

               
               
               Conread position:198-409
               
               
               Cow position:chr20:19616395-19616610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):31, 103

               
               
               Conread position:199-419
               
               
               Cow position:chr20:15822462-15822676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:167
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):36, 26

               
               
               Conread position:199-433
               
               
               Cow position:chr20:28594193-28594427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:174
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):149, 26

               
               
               Conread position:202-425
               
               
               Cow position:chr20:17765420-17765198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:166
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):15, 98

               
               
               Conread position:204-508
               
               
               Cow position:chr20:5644702-5645010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):147, 16

               
               
               Conread position:209-508
               
               
               Cow position:chr20:11548803-11548494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:213
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):16, 91

               
               
               Conread position:210-434
               
               
               Cow position:chr20:33439058-33438838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):7, 71

               
               
               Conread position:213-449
               
               
               Cow position:chr20:5078548-5078784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):136, 7

               
               
               Conread position:214-363
               
               
               Cow position:chr20:37357531-37357678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):134, 88

               
               
               Conread position:214-449
               
               
               Cow position:chr20:11008093-11008327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):9, 66

               
               
               Conread position:214-505
               
               
               Cow position:chr20:35192702-35192990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:200
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):134, 85

               
               
               Conread position:215-490
               
               
               Cow position:chr20:16491997-16492271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:204
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):133, 83

               
               
               Conread position:217-434
               
               
               Cow position:chr20:23506542-23506327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:165
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):131, 77

               
               
               Conread position:224-446
               
               
               Cow position:chr20:9376402-9376623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):6, 68

               
               
               Conread position:227-434
               
               
               Cow position:chr20:16548340-16548136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):121, 71

               
               
               Conread position:227-434
               
               
               Cow position:chr20:20056547-20056344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):121, 75

               
               
               Conread position:227-448
               
               
               Cow position:chr20:11135828-11135597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):7, 77

               
               
               Conread position:227-449
               
               
               Cow position:chr20:354959-354744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:161
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):121, 67

               
               
               Conread position:228-448
               
               
               Cow position:chr20:23850559-23850775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):120, 63

               
               
               Conread position:229-448
               
               
               Cow position:chr20:11359693-11359476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):5, 73

               
               
               Conread position:230-507
               
               
               Cow position:chr20:4787074-4786799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:190
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):5, 83

               
               
               Conread position:233-434
               
               
               Cow position:chr20:10772147-10772347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):115, 63

               
               
               Conread position:237-449
               
               
               Cow position:chr20:39962523-39962732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):111, 62

               
               
               Conread position:237-508
               
               
               Cow position:chr20:21204307-21204567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):108, 49

               
               
               Conread position:242-508
               
               
               Cow position:chr20:17397304-17397049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:178
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):100, 16

               
               
               Conread position:243-449
               
               
               Cow position:chr20:24902345-24902136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:245-449
               
               
               Cow position:chr20:20898635-20898433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:140
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):105, 38

               
               
               Conread position:248-449
               
               
               Cow position:chr20:21428118-21428316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):97, 46

               
               
               Conread position:248-455
               
               
               Cow position:chr20:6248643-6248438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):80, 11

               
               
               Conread position:248-508
               
               
               Cow position:chr20:26750248-26749999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):92, 53

               
               
               Conread position:250-443
               
               
               Cow position:chr20:2169761-2169572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):147, 25

               
               
               Conread position:250-449
               
               
               Cow position:chr20:22030280-22030475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:141
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):99, 52

               
               
               Conread position:251-449
               
               
               Cow position:chr20:40157862-40158057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):97, 51

               
               
               Conread position:254-450
               
               
               Cow position:chr20:7709821-7709623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:149
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):62, 45

               
               
               Conread position:254-494
               
               
               Cow position:chr20:19865218-19865449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):175, 52

               
               
               Conread position:255-505
               
               
               Cow position:chr20:42254825-42255071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:172
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):94, 48

               
               
               Conread position:259-449
               
               
               Cow position:chr20:16941321-16941131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):90, 61

               
               
               Conread position:262-435
               
               
               Cow position:chr20:38850579-38850751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):26, 43

               
               
               Conread position:265-452
               
               
               Cow position:chr20:12126329-12126144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):85, 31

               
               
               Conread position:266-508
               
               
               Cow position:chr20:5763320-5763079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:165
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):83, 57

               
               
               Conread position:298-507
               
               
               Cow position:chr20:4934064-4933856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:151
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):18, 26

               
               
               Conread position:303-508
               
               
               Cow position:chr20:39284974-39285177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):9, 40

               
               
               Conread position:305-508
               
               
               Cow position:chr20:17363644-17363443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):44, 62

               
               
               Conread position:308-449
               
               
               Cow position:chr20:5703485-5703629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:321-485
               
               
               Cow position:chr20:25146810-25146975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:120
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):19, 105

               
               
               Conread position:329-508
               
               
               Cow position:chr20:2430579-2430754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):20, 46

               
               
               Conread position:331-504
               
               
               Cow position:chr20:32892839-32893014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:346-473
               
               
               Cow position:chr20:6053415-6053287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:352-508
               
               
               Cow position:chr20:13617285-13617445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:126
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:353-508
               
               
               Cow position:chr20:8445088-8444933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:121
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):44, 124

               
               
               Conread position:366-508
               
               
               Cow position:chr20:29521156-29521019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:112
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):33, 49

               
               
               Conread position:369-487
               
               
               Cow position:chr20:6571691-6571808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:94
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:369-508
               
               
               Cow position:chr20:30778509-30778649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):28, 15

               
               
               Conread position:375-503
               
               
               Cow position:chr20:21698835-21698964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:108
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:407-508
               
               
               Cow position:chr20:12430471-12430370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:103
               
               
               Alignm identity:85
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):66, 20

               
               
               Conread position:1-277
               
               
               Cow position:chr21:363386-363658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):108, 144

               
               
               Conread position:1-508
               
               
               Cow position:chr21:4399531-4400048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:525
               
               
               Alignm identity:372
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):108, 64

               
               
               Conread position:5-343
               
               
               Cow position:chr21:912229-911896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):105, 46

               
               
               Conread position:11-300
               
               
               Cow position:chr21:18494719-18495000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:213
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):96, 23

               
               
               Conread position:12-434
               
               
               Cow position:chr21:6833794-6834211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):97, 159

               
               
               Conread position:12-448
               
               
               Cow position:chr21:28989361-28989790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):100, 34

               
               
               Conread position:12-473
               
               
               Cow position:chr21:47823525-47823069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):99, 46

               
               
               Conread position:12-508
               
               
               Cow position:chr21:23801378-23800897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:500
               
               
               Alignm identity:374
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):99, 26

               
               
               Conread position:15-309
               
               
               Cow position:chr21:1463978-1464271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):200, 76

               
               
               Conread position:15-449
               
               
               Cow position:chr21:36795345-36795781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 162

               
               
               Conread position:15-451
               
               
               Cow position:chr21:46849374-46848948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 30

               
               
               Conread position:16-286
               
               
               Cow position:chr21:4080100-4080376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:198
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):83, 102

               
               
               Conread position:16-297
               
               
               Cow position:chr21:34738344-34738638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:214
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:16-300
               
               
               Cow position:chr21:48484694-48484416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:211
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):208, 49

               
               
               Conread position:16-321
               
               
               Cow position:chr21:40244180-40244492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:210
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):93, 290

               
               
               Conread position:16-342
               
               
               Cow position:chr21:18934669-18934996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:211
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):82, 158

               
               
               Conread position:16-343
               
               
               Cow position:chr21:17714059-17714388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:220
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):86, 155

               
               
               Conread position:16-343
               
               
               Cow position:chr21:27743487-27743819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 119

               
               
               Conread position:16-356
               
               
               Cow position:chr21:8985295-8985636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 176

               
               
               Conread position:16-358
               
               
               Cow position:chr21:13897939-13898274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 47

               
               
               Conread position:16-362
               
               
               Cow position:chr21:5455240-5454901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:256
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):56, 92

               
               
               Conread position:16-366
               
               
               Cow position:chr21:45866682-45867028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:235
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):93, 115

               
               
               Conread position:16-367
               
               
               Cow position:chr21:21963224-21963576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:233
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):101, 250

               
               
               Conread position:16-367
               
               
               Cow position:chr21:34074713-34075066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:234
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):46, 38

               
               
               Conread position:16-369
               
               
               Cow position:chr21:28881895-28882236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:255
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):93, 50

               
               
               Conread position:16-369
               
               
               Cow position:chr21:44108755-44109100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:237
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):98, 49

               
               
               Conread position:16-373
               
               
               Cow position:chr21:2514920-2515272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:234
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):101, 89

               
               
               Conread position:16-373
               
               
               Cow position:chr21:10075190-10074829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:236
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):43, 38

               
               
               Conread position:16-373
               
               
               Cow position:chr21:33235544-33235905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:239
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):101, 289

               
               
               Conread position:16-390
               
               
               Cow position:chr21:20262588-20262217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 206

               
               
               Conread position:16-393
               
               
               Cow position:chr21:28998161-28997781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 294

               
               
               Conread position:16-394
               
               
               Cow position:chr21:10727027-10727399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 157

               
               
               Conread position:16-399
               
               
               Cow position:chr21:33729179-33729558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 186

               
               
               Conread position:16-403
               
               
               Cow position:chr21:28512287-28512646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:271
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):93, 29

               
               
               Conread position:16-406
               
               
               Cow position:chr21:24796288-24795893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:265
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):101, 30

               
               
               Conread position:16-408
               
               
               Cow position:chr21:39664627-39664261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:273
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):199, 48

               
               
               Conread position:16-408
               
               
               Cow position:chr21:46912290-46912682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):206, 93

               
               
               Conread position:16-420
               
               
               Cow position:chr21:30607357-30606937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 187

               
               
               Conread position:16-420
               
               
               Cow position:chr21:34391220-34390826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 14

               
               
               Conread position:16-425
               
               
               Cow position:chr21:15584653-15584265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):332, 38

               
               
               Conread position:16-425
               
               
               Cow position:chr21:47760523-47760922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):158, 219

               
               
               Conread position:16-426
               
               
               Cow position:chr21:39401346-39401745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):309, 88

               
               
               Conread position:16-432
               
               
               Cow position:chr21:4998739-4998335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):186, 205

               
               
               Conread position:16-434
               
               
               Cow position:chr21:12616888-12617325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 45

               
               
               Conread position:16-434
               
               
               Cow position:chr21:28429196-28429607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:282
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):97, 36

               
               
               Conread position:16-434
               
               
               Cow position:chr21:32237046-32237442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 44

               
               
               Conread position:16-442
               
               
               Cow position:chr21:45915958-45915547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:281
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):93, 107

               
               
               Conread position:16-446
               
               
               Cow position:chr21:42414353-42413922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 45

               
               
               Conread position:16-447
               
               
               Cow position:chr21:18568903-18568463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 46

               
               
               Conread position:16-447
               
               
               Cow position:chr21:20160430-20160852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 87

               
               
               Conread position:16-447
               
               
               Cow position:chr21:31691227-31691658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 49

               
               
               Conread position:16-447
               
               
               Cow position:chr21:36762799-36763237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 133

               
               
               Conread position:16-448
               
               
               Cow position:chr21:5898649-5898225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 31

               
               
               Conread position:16-448
               
               
               Cow position:chr21:28734166-28733736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 211

               
               
               Conread position:16-448
               
               
               Cow position:chr21:37299211-37299639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 210

               
               
               Conread position:16-448
               
               
               Cow position:chr21:42500777-42501227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 76

               
               
               Conread position:16-449
               
               
               Cow position:chr21:395624-396045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 57

               
               
               Conread position:16-449
               
               
               Cow position:chr21:641330-641765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 130

               
               
               Conread position:16-449
               
               
               Cow position:chr21:643083-643502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 78

               
               
               Conread position:16-449
               
               
               Cow position:chr21:14760331-14760743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 5

               
               
               Conread position:16-449
               
               
               Cow position:chr21:15976387-15976810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 35

               
               
               Conread position:16-449
               
               
               Cow position:chr21:22719034-22718606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 45

               
               
               Conread position:16-449
               
               
               Cow position:chr21:24297017-24296590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:284
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):95, 63

               
               
               Conread position:16-449
               
               
               Cow position:chr21:26648258-26647838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:294
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):93, 77

               
               
               Conread position:16-449
               
               
               Cow position:chr21:44252082-44251665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 170

               
               
               Conread position:16-451
               
               
               Cow position:chr21:17643217-17642806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):135, 49

               
               
               Conread position:16-451
               
               
               Cow position:chr21:33562760-33563182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 97

               
               
               Conread position:16-455
               
               
               Cow position:chr21:33263597-33264028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 62

               
               
               Conread position:16-457
               
               
               Cow position:chr21:5238152-5238578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:286
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):99, 45

               
               
               Conread position:16-463
               
               
               Cow position:chr21:36819477-36819038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:320
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):62, 128

               
               
               Conread position:16-469
               
               
               Cow position:chr21:10514558-10515000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:307
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):84, 47

               
               
               Conread position:16-488
               
               
               Cow position:chr21:3585610-3585157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):332, 74

               
               
               Conread position:16-499
               
               
               Cow position:chr21:28810503-28810029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:499
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):131, 41

               
               
               Conread position:16-504
               
               
               Cow position:chr21:27230046-27229552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:364
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 48

               
               
               Conread position:16-504
               
               
               Cow position:chr21:44755031-44754557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:500
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 49

               
               
               Conread position:16-505
               
               
               Cow position:chr21:4282118-4281631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:505
               
               
               Alignm identity:356
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 39

               
               
               Conread position:16-505
               
               
               Cow position:chr21:12153879-12154377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 233

               
               
               Conread position:16-505
               
               
               Cow position:chr21:30231954-30231444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:521
               
               
               Alignm identity:352
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 45

               
               
               Conread position:16-506
               
               
               Cow position:chr21:31576260-31576722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:496
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 57

               
               
               Conread position:16-507
               
               
               Cow position:chr21:7672879-7673367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:331
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):91, 164

               
               
               Conread position:16-508
               
               
               Cow position:chr21:81816-82314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:515
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 214

               
               
               Conread position:16-508
               
               
               Cow position:chr21:3253924-3254388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:499
               
               
               Alignm identity:354
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 24

               
               
               Conread position:16-508
               
               
               Cow position:chr21:9940432-9939953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:500
               
               
               Alignm identity:366
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 38

               
               
               Conread position:16-508
               
               
               Cow position:chr21:15742351-15741848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:514
               
               
               Alignm identity:358
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 141

               
               
               Conread position:16-508
               
               
               Cow position:chr21:21223030-21223517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:357
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 93

               
               
               Conread position:16-508
               
               
               Cow position:chr21:25764381-25764871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:499
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 208

               
               
               Conread position:16-508
               
               
               Cow position:chr21:30849198-30848693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:519
               
               
               Alignm identity:371
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 119

               
               
               Conread position:16-508
               
               
               Cow position:chr21:32574477-32574957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:370
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 128

               
               
               Conread position:17-289
               
               
               Cow position:chr21:34658781-34659054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):85, 182

               
               
               Conread position:17-324
               
               
               Cow position:chr21:38867819-38867518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:217
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):169, 51

               
               
               Conread position:17-368
               
               
               Cow position:chr21:16612376-16612721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:244
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):92, 154

               
               
               Conread position:17-399
               
               
               Cow position:chr21:10071182-10070800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:266
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):100, 127

               
               
               Conread position:17-399
               
               
               Cow position:chr21:18289410-18289790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 47

               
               
               Conread position:17-432
               
               
               Cow position:chr21:39888997-39888577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 146

               
               
               Conread position:17-434
               
               
               Cow position:chr21:9415989-9416414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 286

               
               
               Conread position:17-448
               
               
               Cow position:chr21:937799-938194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:286
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):380, 43

               
               
               Conread position:17-449
               
               
               Cow position:chr21:6713791-6713345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 218

               
               
               Conread position:17-449
               
               
               Cow position:chr21:27863772-27863336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 259

               
               
               Conread position:17-450
               
               
               Cow position:chr21:45474008-45473579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 50

               
               
               Conread position:17-451
               
               
               Cow position:chr21:39403791-39403343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 173

               
               
               Conread position:17-508
               
               
               Cow position:chr21:33997478-33996995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:499
               
               
               Alignm identity:361
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 157

               
               
               Conread position:18-294
               
               
               Cow position:chr21:26829487-26829233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:199
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:18-336
               
               
               Cow position:chr21:42190419-42190108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:224
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):56, 88

               
               
               Conread position:18-419
               
               
               Cow position:chr21:43357513-43357108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 109

               
               
               Conread position:18-434
               
               
               Cow position:chr21:29214407-29213997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:288
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):82, 39

               
               
               Conread position:18-439
               
               
               Cow position:chr21:23672494-23672913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 50

               
               
               Conread position:18-449
               
               
               Cow position:chr21:7582157-7581727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 74

               
               
               Conread position:18-449
               
               
               Cow position:chr21:49700288-49699862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 265

               
               
               Conread position:18-464
               
               
               Cow position:chr21:24698230-24698673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 215

               
               
               Conread position:18-482
               
               
               Cow position:chr21:23785776-23786241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 73

               
               
               Conread position:18-499
               
               
               Cow position:chr21:28210933-28211423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:337
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):59, 219

               
               
               Conread position:18-508
               
               
               Cow position:chr21:3236280-3236758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:500
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):293, 133

               
               
               Conread position:19-448
               
               
               Cow position:chr21:42384257-42384685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 33

               
               
               Conread position:19-449
               
               
               Cow position:chr21:23322332-23321900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):153, 91

               
               
               Conread position:20-449
               
               
               Cow position:chr21:13089729-13089296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:292
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):78, 41

               
               
               Conread position:21-368
               
               
               Cow position:chr21:24864906-24865257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 225

               
               
               Conread position:21-508
               
               
               Cow position:chr21:38900524-38901018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:504
               
               
               Alignm identity:374
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 206

               
               
               Conread position:22-449
               
               
               Cow position:chr21:34653836-34654251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 40

               
               
               Conread position:23-321
               
               
               Cow position:chr21:42905622-42905327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:213
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):76, 38

               
               
               Conread position:27-400
               
               
               Cow position:chr21:5636964-5636592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 198

               
               
               Conread position:27-449
               
               
               Cow position:chr21:26244684-26245092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 91

               
               
               Conread position:30-434
               
               
               Cow position:chr21:36297239-36297656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 201

               
               
               Conread position:30-507
               
               
               Cow position:chr21:29015129-29014663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:494
               
               
               Alignm identity:325
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):79, 24

               
               
               Conread position:30-508
               
               
               Cow position:chr21:31662218-31662702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:490
               
               
               Alignm identity:357
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 191

               
               
               Conread position:33-508
               
               
               Cow position:chr21:4098635-4099102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:351
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 144

               
               
               Conread position:35-309
               
               
               Cow position:chr21:12973492-12973207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:204
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):25, 277

               
               
               Conread position:35-426
               
               
               Cow position:chr21:41878241-41878624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 107

               
               
               Conread position:35-507
               
               
               Cow position:chr21:15445314-15444828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:494
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 268

               
               
               Conread position:36-449
               
               
               Cow position:chr21:34010624-34010220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 116

               
               
               Conread position:38-408
               
               
               Cow position:chr21:27124360-27123984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:255
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):61, 198

               
               
               Conread position:40-293
               
               
               Cow position:chr21:9278138-9278405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:184
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:46-370
               
               
               Cow position:chr21:4189610-4189939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:217
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):52, 261

               
               
               Conread position:47-508
               
               
               Cow position:chr21:44093557-44093999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:301
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):14, 20

               
               
               Conread position:53-298
               
               
               Cow position:chr21:20910307-20910067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):56, 14

               
               
               Conread position:57-434
               
               
               Cow position:chr21:23535500-23535871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:259
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):37, 102

               
               
               Conread position:58-508
               
               
               Cow position:chr21:13754592-13755017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:306
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):45, 53

               
               
               Conread position:61-397
               
               
               Cow position:chr21:32454690-32455029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:225
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):36, 100

               
               
               Conread position:62-505
               
               
               Cow position:chr21:22860794-22861244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 115

               
               
               Conread position:63-434
               
               
               Cow position:chr21:19258619-19258981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 184

               
               
               Conread position:63-456
               
               
               Cow position:chr21:32339942-32339555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 32

               
               
               Conread position:65-448
               
               
               Cow position:chr21:45330145-45329773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 70

               
               
               Conread position:66-295
               
               
               Cow position:chr21:24094948-24094722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):43, 83

               
               
               Conread position:66-316
               
               
               Cow position:chr21:37361678-37361426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:196
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):26, 114

               
               
               Conread position:66-371
               
               
               Cow position:chr21:17674442-17674134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):11, 71

               
               
               Conread position:66-432
               
               
               Cow position:chr21:41620915-41621285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:256
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):43, 161

               
               
               Conread position:66-449
               
               
               Cow position:chr21:33517-33897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 129

               
               
               Conread position:66-449
               
               
               Cow position:chr21:3818012-3818386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 89

               
               
               Conread position:66-507
               
               
               Cow position:chr21:40133951-40134400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 161

               
               
               Conread position:66-508
               
               
               Cow position:chr21:18378641-18379079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 45

               
               
               Conread position:68-508
               
               
               Cow position:chr21:46242441-46242004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 176

               
               
               Conread position:69-336
               
               
               Cow position:chr21:31676297-31676562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:198
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):40, 87

               
               
               Conread position:70-346
               
               
               Cow position:chr21:42145716-42145992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):32, 155

               
               
               Conread position:70-449
               
               
               Cow position:chr21:27521525-27521162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:263
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):152, 40

               
               
               Conread position:70-449
               
               
               Cow position:chr21:41579551-41579934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 34

               
               
               Conread position:70-449
               
               
               Cow position:chr21:41597615-41597989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:262
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):39, 231

               
               
               Conread position:70-490
               
               
               Cow position:chr21:34237195-34237594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:273
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):39, 17

               
               
               Conread position:70-508
               
               
               Cow position:chr21:25800214-25800631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):172, 24

               
               
               Conread position:71-413
               
               
               Cow position:chr21:18828508-18828160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:234
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):40, 153

               
               
               Conread position:71-422
               
               
               Cow position:chr21:18845214-18844861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:236
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):38, 60

               
               
               Conread position:71-422
               
               
               Cow position:chr21:45330807-45330456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:249
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):40, 233

               
               
               Conread position:71-424
               
               
               Cow position:chr21:35061889-35062235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:248
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):38, 155

               
               
               Conread position:71-431
               
               
               Cow position:chr21:25382810-25383186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 68

               
               
               Conread position:71-434
               
               
               Cow position:chr21:13585257-13584898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:270
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):178, 82

               
               
               Conread position:71-451
               
               
               Cow position:chr21:6051307-6051683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 151

               
               
               Conread position:71-451
               
               
               Cow position:chr21:18780169-18779796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:256
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):74, 43

               
               
               Conread position:71-456
               
               
               Cow position:chr21:10005083-10004701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):102, 119

               
               
               Conread position:71-469
               
               
               Cow position:chr21:11645168-11644769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 119

               
               
               Conread position:71-506
               
               
               Cow position:chr21:33947443-33947021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):172, 43

               
               
               Conread position:71-508
               
               
               Cow position:chr21:45355637-45356070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 152

               
               
               Conread position:73-429
               
               
               Cow position:chr21:13738374-13738710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:246
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):91, 37

               
               
               Conread position:73-448
               
               
               Cow position:chr21:3361211-3360838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 75

               
               
               Conread position:73-508
               
               
               Cow position:chr21:23586679-23587127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 158

               
               
               Conread position:73-508
               
               
               Cow position:chr21:33727658-33727225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 97

               
               
               Conread position:74-508
               
               
               Cow position:chr21:38449648-38449197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 158

               
               
               Conread position:76-426
               
               
               Cow position:chr21:3763931-3763588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:243
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):32, 17

               
               
               Conread position:77-343
               
               
               Cow position:chr21:42459740-42459466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:202
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):37, 153

               
               
               Conread position:77-355
               
               
               Cow position:chr21:21077136-21077409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:198
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):20, 66

               
               
               Conread position:77-422
               
               
               Cow position:chr21:1591358-1591705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 31

               
               
               Conread position:77-433
               
               
               Cow position:chr21:31253342-31253695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:258
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):28, 231

               
               
               Conread position:77-444
               
               
               Cow position:chr21:42841784-42841424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):268, 105

               
               
               Conread position:77-447
               
               
               Cow position:chr21:10118360-10118742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:265
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):32, 228

               
               
               Conread position:77-449
               
               
               Cow position:chr21:35569577-35569186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:267
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):60, 33

               
               
               Conread position:77-449
               
               
               Cow position:chr21:42135817-42135438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 148

               
               
               Conread position:77-482
               
               
               Cow position:chr21:34565406-34565004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 148

               
               
               Conread position:78-404
               
               
               Cow position:chr21:10601560-10601242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:229
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):33, 67

               
               
               Conread position:78-451
               
               
               Cow position:chr21:17193952-17193569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:258
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):31, 226

               
               
               Conread position:78-494
               
               
               Cow position:chr21:35996980-35997394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 145

               
               
               Conread position:78-508
               
               
               Cow position:chr21:18942021-18941598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 85

               
               
               Conread position:79-505
               
               
               Cow position:chr21:5426755-5427179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 30

               
               
               Conread position:79-508
               
               
               Cow position:chr21:25286318-25286750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 147

               
               
               Conread position:79-508
               
               
               Cow position:chr21:32559545-32559116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:302
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):30, 84

               
               
               Conread position:79-508
               
               
               Cow position:chr21:34739658-34740081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):270, 32

               
               
               Conread position:80-434
               
               
               Cow position:chr21:33791558-33791219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:256
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):29, 96

               
               
               Conread position:80-448
               
               
               Cow position:chr21:13365151-13365519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 108

               
               
               Conread position:81-432
               
               
               Cow position:chr21:14452041-14452394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:253
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):30, 73

               
               
               Conread position:81-450
               
               
               Cow position:chr21:18850408-18850042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:256
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):28, 74

               
               
               Conread position:81-451
               
               
               Cow position:chr21:47764301-47763938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 110

               
               
               Conread position:81-508
               
               
               Cow position:chr21:22353419-22353001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:286
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):30, 43

               
               
               Conread position:82-369
               
               
               Cow position:chr21:6102457-6102164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:211
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):25, 155

               
               
               Conread position:82-449
               
               
               Cow position:chr21:40589671-40589304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 143

               
               
               Conread position:82-449
               
               
               Cow position:chr21:47465309-47464941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 109

               
               
               Conread position:83-443
               
               
               Cow position:chr21:37706594-37706243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:254
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):26, 70

               
               
               Conread position:85-505
               
               
               Cow position:chr21:12087409-12087829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 28

               
               
               Conread position:85-508
               
               
               Cow position:chr21:6316018-6316446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:280
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):63, 33

               
               
               Conread position:88-449
               
               
               Cow position:chr21:802476-802139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:254
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):21, 75

               
               
               Conread position:89-362
               
               
               Cow position:chr21:39450349-39450071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):13, 26

               
               
               Conread position:89-403
               
               
               Cow position:chr21:46143762-46144091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:226
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):25, 103

               
               
               Conread position:89-421
               
               
               Cow position:chr21:18842419-18842087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:230
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):20, 136

               
               
               Conread position:89-508
               
               
               Cow position:chr21:15911219-15911633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 85

               
               
               Conread position:92-443
               
               
               Cow position:chr21:8235722-8235390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:240
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):19, 95

               
               
               Conread position:95-449
               
               
               Cow position:chr21:17183748-17184095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 29

               
               
               Conread position:95-482
               
               
               Cow position:chr21:34159785-34160158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 177

               
               
               Conread position:96-354
               
               
               Cow position:chr21:49662291-49662039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):13, 51

               
               
               Conread position:96-447
               
               
               Cow position:chr21:18790730-18790390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:246
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):13, 75

               
               
               Conread position:96-505
               
               
               Cow position:chr21:4723305-4723714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:287
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):13, 64

               
               
               Conread position:96-508
               
               
               Cow position:chr21:30592477-30592059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:287
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):15, 124

               
               
               Conread position:97-449
               
               
               Cow position:chr21:10000911-10001253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):251, 11

               
               
               Conread position:98-387
               
               
               Cow position:chr21:46829440-46829157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:201
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):11, 76

               
               
               Conread position:98-443
               
               
               Cow position:chr21:37345273-37344929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:246
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):13, 203

               
               
               Conread position:101-508
               
               
               Cow position:chr21:12301669-12301275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 6

               
               
               Conread position:110-400
               
               
               Cow position:chr21:13840164-13840454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:213
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):79, 37

               
               
               Conread position:110-464
               
               
               Cow position:chr21:10114487-10114142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:243
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):144, 76

               
               
               Conread position:110-505
               
               
               Cow position:chr21:18065082-18064674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:288
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):106, 160

               
               
               Conread position:113-350
               
               
               Cow position:chr21:28617435-28617669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:167
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):104, 19

               
               
               Conread position:113-369
               
               
               Cow position:chr21:21769969-21770224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:171
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):60, 182

               
               
               Conread position:113-385
               
               
               Cow position:chr21:17174989-17175256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:200
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):54, 174

               
               
               Conread position:113-507
               
               
               Cow position:chr21:28244320-28244721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):284, 56

               
               
               Conread position:114-449
               
               
               Cow position:chr21:24642364-24642690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 48

               
               
               Conread position:115-447
               
               
               Cow position:chr21:45921212-45920883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:232
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):90, 106

               
               
               Conread position:117-507
               
               
               Cow position:chr21:10823402-10823794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:266
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):55, 192

               
               
               Conread position:117-508
               
               
               Cow position:chr21:46607735-46607357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 37

               
               
               Conread position:118-382
               
               
               Cow position:chr21:45439400-45439126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):49, 191

               
               
               Conread position:121-448
               
               
               Cow position:chr21:30222199-30222522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:221
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):228, 40

               
               
               Conread position:123-449
               
               
               Cow position:chr21:957521-957848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 123

               
               
               Conread position:124-421
               
               
               Cow position:chr21:16981736-16982025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):175, 53

               
               
               Conread position:125-449
               
               
               Cow position:chr21:29978907-29978582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 102

               
               
               Conread position:125-449
               
               
               Cow position:chr21:42007603-42007284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):104, 44

               
               
               Conread position:128-418
               
               
               Cow position:chr21:11250725-11251016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:219
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):19, 38

               
               
               Conread position:132-343
               
               
               Cow position:chr21:39809763-39809964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:132-422
               
               
               Cow position:chr21:20152811-20153107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:211
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):91, 170

               
               
               Conread position:132-448
               
               
               Cow position:chr21:11359901-11360203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:225
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):40, 67

               
               
               Conread position:132-448
               
               
               Cow position:chr21:28923980-28924286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:225
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):216, 59

               
               
               Conread position:133-441
               
               
               Cow position:chr21:20260456-20260149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:208
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):216, 86

               
               
               Conread position:133-508
               
               
               Cow position:chr21:12462106-12461714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 87

               
               
               Conread position:136-391
               
               
               Cow position:chr21:37886278-37886528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:177
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):38, 88

               
               
               Conread position:139-422
               
               
               Cow position:chr21:10561713-10561432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:196
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):209, 81

               
               
               Conread position:140-422
               
               
               Cow position:chr21:34151452-34151736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):85, 162

               
               
               Conread position:145-449
               
               
               Cow position:chr21:30835241-30835541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):252, 27

               
               
               Conread position:147-426
               
               
               Cow position:chr21:36789672-36789951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):27, 76

               
               
               Conread position:150-448
               
               
               Cow position:chr21:25629025-25628735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:206
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):75, 11

               
               
               Conread position:150-508
               
               
               Cow position:chr21:11676161-11675817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:241
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):166, 14

               
               
               Conread position:150-508
               
               
               Cow position:chr21:21181058-21181413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:236
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):101, 70

               
               
               Conread position:150-508
               
               
               Cow position:chr21:46552218-46551870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):195, 22

               
               
               Conread position:157-364
               
               
               Cow position:chr21:6621435-6621227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):17, 85

               
               
               Conread position:157-446
               
               
               Cow position:chr21:2657708-2657984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):32, 63

               
               
               Conread position:157-449
               
               
               Cow position:chr21:10538373-10538077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:214
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):74, 29

               
               
               Conread position:157-508
               
               
               Cow position:chr21:6697141-6696781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:249
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):97, 67

               
               
               Conread position:158-319
               
               
               Cow position:chr21:46469859-46470017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:121
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):21, 47

               
               
               Conread position:158-449
               
               
               Cow position:chr21:23980292-23980004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:199
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):64, 134

               
               
               Conread position:159-367
               
               
               Cow position:chr21:9980073-9979875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):186, 63

               
               
               Conread position:159-424
               
               
               Cow position:chr21:18414941-18415204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:185
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):73, 141

               
               
               Conread position:159-469
               
               
               Cow position:chr21:46929-47238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:217
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):109, 29

               
               
               Conread position:160-449
               
               
               Cow position:chr21:22465089-22465368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:194
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):185, 59

               
               
               Conread position:160-508
               
               
               Cow position:chr21:10673023-10673365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:252
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):193, 51

               
               
               Conread position:161-412
               
               
               Cow position:chr21:18155677-18155425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:175
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):64, 137

               
               
               Conread position:161-423
               
               
               Cow position:chr21:45923751-45923504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:179
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):188, 80

               
               
               Conread position:161-434
               
               
               Cow position:chr21:35354426-35354696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):186, 58

               
               
               Conread position:161-449
               
               
               Cow position:chr21:17875299-17875015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):187, 145

               
               
               Conread position:163-422
               
               
               Cow position:chr21:49649529-49649779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:176
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:165-508
               
               
               Cow position:chr21:8206669-8207012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):183, 54

               
               
               Conread position:166-421
               
               
               Cow position:chr21:32904257-32904005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):77, 58

               
               
               Conread position:168-440
               
               
               Cow position:chr21:22121422-22121673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):229, 52

               
               
               Conread position:170-452
               
               
               Cow position:chr21:22210342-22210066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:205
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):181, 60

               
               
               Conread position:172-448
               
               
               Cow position:chr21:16914679-16914953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:180
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):172, 107

               
               
               Conread position:172-508
               
               
               Cow position:chr21:20418781-20418451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):176, 127

               
               
               Conread position:174-430
               
               
               Cow position:chr21:8527571-8527326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):51, 83

               
               
               Conread position:174-449
               
               
               Cow position:chr21:47714102-47713832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):9, 29

               
               
               Conread position:176-449
               
               
               Cow position:chr21:6997846-6998125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:197
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):50, 130

               
               
               Conread position:179-449
               
               
               Cow position:chr21:28237803-28237530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):47, 115

               
               
               Conread position:179-449
               
               
               Cow position:chr21:33580324-33580597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):37, 26

               
               
               Conread position:180-397
               
               
               Cow position:chr21:11198237-11198023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):161, 119

               
               
               Conread position:180-508
               
               
               Cow position:chr21:37014493-37014170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:225
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):13, 102

               
               
               Conread position:182-408
               
               
               Cow position:chr21:9036209-9036438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:165
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):38, 120

               
               
               Conread position:188-426
               
               
               Cow position:chr21:7394302-7394530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):160, 11

               
               
               Conread position:191-369
               
               
               Cow position:chr21:33360111-33359940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:137
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:192-449
               
               
               Cow position:chr21:10410142-10410400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):26, 130

               
               
               Conread position:192-449
               
               
               Cow position:chr21:16152355-16152619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):47, 243

               
               
               Conread position:192-449
               
               
               Cow position:chr21:36909858-36910109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):156, 104

               
               
               Conread position:192-508
               
               
               Cow position:chr21:13736977-13737283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):143, 79

               
               
               Conread position:193-472
               
               
               Cow position:chr21:31661930-31662204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):152, 27

               
               
               Conread position:196-449
               
               
               Cow position:chr21:19673732-19673984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):149, 103

               
               
               Conread position:196-508
               
               
               Cow position:chr21:15544290-15543984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:234
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):203, 24

               
               
               Conread position:196-508
               
               
               Cow position:chr21:33414157-33413842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):203, 24

               
               
               Conread position:197-448
               
               
               Cow position:chr21:45262883-45262633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:179
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):54, 22

               
               
               Conread position:198-397
               
               
               Cow position:chr21:46140971-46141173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):31, 103

               
               
               Conread position:198-420
               
               
               Cow position:chr21:40432379-40432594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:164
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):151, 83

               
               
               Conread position:198-448
               
               
               Cow position:chr21:30256340-30256097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):32, 50

               
               
               Conread position:201-420
               
               
               Cow position:chr21:17929909-17929688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):14, 101

               
               
               Conread position:203-450
               
               
               Cow position:chr21:41140783-41140539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:164
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):145, 87

               
               
               Conread position:205-413
               
               
               Cow position:chr21:297689-297896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):5, 15

               
               
               Conread position:205-508
               
               
               Cow position:chr21:23397908-23397616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:212
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):144, 15

               
               
               Conread position:206-450
               
               
               Cow position:chr21:6758284-6758522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):142, 82

               
               
               Conread position:206-451
               
               
               Cow position:chr21:11779592-11779362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:212-447
               
               
               Cow position:chr21:7377984-7377750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:169
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):31, 7

               
               
               Conread position:213-396
               
               
               Cow position:chr21:9302482-9302303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:213-422
               
               
               Cow position:chr21:22014131-22014341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:143
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):81, 69

               
               
               Conread position:214-434
               
               
               Cow position:chr21:5464692-5464911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):183, 88

               
               
               Conread position:214-447
               
               
               Cow position:chr21:17890248-17890478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):131, 82

               
               
               Conread position:215-448
               
               
               Cow position:chr21:868979-868747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:174
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):133, 66

               
               
               Conread position:215-508
               
               
               Cow position:chr21:31159348-31159641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:209
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):35, 85

               
               
               Conread position:222-449
               
               
               Cow position:chr21:734550-734767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):175, 18

               
               
               Conread position:224-434
               
               
               Cow position:chr21:47363783-47363571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):124, 72

               
               
               Conread position:224-451
               
               
               Cow position:chr21:19513820-19514033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):119, 80

               
               
               Conread position:224-507
               
               
               Cow position:chr21:28919569-28919277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):124, 78

               
               
               Conread position:225-506
               
               
               Cow position:chr21:15239239-15239511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:190
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):124, 63

               
               
               Conread position:229-505
               
               
               Cow position:chr21:471637-471911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:192
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):119, 73

               
               
               Conread position:229-508
               
               
               Cow position:chr21:39509428-39509153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:196
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):120, 12

               
               
               Conread position:231-449
               
               
               Cow position:chr21:30157848-30157628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):46, 91

               
               
               Conread position:232-434
               
               
               Cow position:chr21:40192338-40192141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):117, 67

               
               
               Conread position:234-473
               
               
               Cow position:chr21:37718479-37718248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:241-486
               
               
               Cow position:chr21:26753468-26753705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):108, 49

               
               
               Conread position:242-508
               
               
               Cow position:chr21:42209658-42209390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):106, 71

               
               
               Conread position:243-440
               
               
               Cow position:chr21:8420597-8420793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):63, 72

               
               
               Conread position:243-448
               
               
               Cow position:chr21:38720226-38720425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):105, 53

               
               
               Conread position:243-508
               
               
               Cow position:chr21:13395572-13395836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:200
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):108, 15

               
               
               Conread position:243-508
               
               
               Cow position:chr21:36371460-36371717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:184
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):106, 59

               
               
               Conread position:244-449
               
               
               Cow position:chr21:28030263-28030466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:151
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):101, 60

               
               
               Conread position:248-433
               
               
               Cow position:chr21:46132557-46132736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):100, 10

               
               
               Conread position:250-496
               
               
               Cow position:chr21:37235366-37235610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:193
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 33

               
               
               Conread position:252-485
               
               
               Cow position:chr21:6387983-6388207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:175
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):33, 46

               
               
               Conread position:254-482
               
               
               Cow position:chr21:13036915-13036695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:157
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):91, 42

               
               
               Conread position:255-450
               
               
               Cow position:chr21:9862582-9862396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:141
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):94, 51

               
               
               Conread position:259-434
               
               
               Cow position:chr21:31279244-31279419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):39, 10

               
               
               Conread position:260-449
               
               
               Cow position:chr21:7768425-7768616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:143
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:264-506
               
               
               Cow position:chr21:7823354-7823588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:171
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):71, 7

               
               
               Conread position:275-499
               
               
               Cow position:chr21:40769296-40769512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:171
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):76, 27

               
               
               Conread position:282-449
               
               
               Cow position:chr21:19360164-19359998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:121
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):67, 15

               
               
               Conread position:290-484
               
               
               Cow position:chr21:18135854-18135661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):107, 12

               
               
               Conread position:295-506
               
               
               Cow position:chr21:7483326-7483121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):23, 6

               
               
               Conread position:303-448
               
               
               Cow position:chr21:41610197-41610347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:113
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:305-449
               
               
               Cow position:chr21:30119726-30119872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:306-434
               
               
               Cow position:chr21:12207769-12207639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:103
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:306-448
               
               
               Cow position:chr21:44592176-44592032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:307-434
               
               
               Cow position:chr21:8231643-8231515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:101
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):33, 43

               
               
               Conread position:307-508
               
               
               Cow position:chr21:46451918-46451717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:137
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):89, 37

               
               
               Conread position:308-508
               
               
               Cow position:chr21:37838031-37837823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:310-449
               
               
               Cow position:chr21:22939804-22939948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:312-452
               
               
               Cow position:chr21:38268023-38267882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:107
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):36, 135

               
               
               Conread position:346-508
               
               
               Cow position:chr21:26147152-26147314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:128
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):53, 17

               
               
               Conread position:353-508
               
               
               Cow position:chr21:34649109-34648954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):45, 137

               
               
               Conread position:354-508
               
               
               Cow position:chr21:43642619-43642773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:116
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):10, 98

               
               
               Conread position:358-508
               
               
               Cow position:chr21:44220449-44220601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:10-399
               
               
               Cow position:chr22:44936846-44937242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:253
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):54, 138

               
               
               Conread position:10-434
               
               
               Cow position:chr22:45132970-45132552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:278
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):213, 17

               
               
               Conread position:11-376
               
               
               Cow position:chr22:3064557-3064175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:258
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):59, 246

               
               
               Conread position:11-463
               
               
               Cow position:chr22:41983030-41982598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 34

               
               
               Conread position:11-506
               
               
               Cow position:chr22:7302171-7301674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:356
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 300

               
               
               Conread position:12-388
               
               
               Cow position:chr22:2070648-2071012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):97, 23

               
               
               Conread position:12-427
               
               
               Cow position:chr22:34476325-34475911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):99, 136

               
               
               Conread position:12-449
               
               
               Cow position:chr22:4119893-4119451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):99, 213

               
               
               Conread position:12-449
               
               
               Cow position:chr22:14925045-14924621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):99, 29

               
               
               Conread position:15-396
               
               
               Cow position:chr22:2470569-2470183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:267
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):96, 222

               
               
               Conread position:15-435
               
               
               Cow position:chr22:17152357-17152775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 151

               
               
               Conread position:15-457
               
               
               Cow position:chr22:31870573-31870140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:294
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):53, 99

               
               
               Conread position:15-503
               
               
               Cow position:chr22:14143428-14142941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:335
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):94, 140

               
               
               Conread position:15-507
               
               
               Cow position:chr22:8733641-8733159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 46

               
               
               Conread position:15-507
               
               
               Cow position:chr22:30819046-30818558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:500
               
               
               Alignm identity:318
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):102, 46

               
               
               Conread position:16-284
               
               
               Cow position:chr22:11200725-11200984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:188
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):86, 45

               
               
               Conread position:16-284
               
               
               Cow position:chr22:11987535-11987266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 45

               
               
               Conread position:16-284
               
               
               Cow position:chr22:22278992-22279266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:177
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:16-284
               
               
               Cow position:chr22:45365801-45366075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:16-295
               
               
               Cow position:chr22:13017101-13016836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:189
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):95, 11

               
               
               Conread position:16-300
               
               
               Cow position:chr22:9155688-9155401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):93, 63

               
               
               Conread position:16-300
               
               
               Cow position:chr22:30472725-30473011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 55

               
               
               Conread position:16-307
               
               
               Cow position:chr22:5042007-5042289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):93, 38

               
               
               Conread position:16-323
               
               
               Cow position:chr22:31497424-31497117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:215
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):93, 210

               
               
               Conread position:16-336
               
               
               Cow position:chr22:26106737-26107055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:223
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):101, 206

               
               
               Conread position:16-342
               
               
               Cow position:chr22:39452258-39452603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:241
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):20, 306

               
               
               Conread position:16-358
               
               
               Cow position:chr22:11500460-11500798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:241
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):28, 97

               
               
               Conread position:16-360
               
               
               Cow position:chr22:32651188-32651525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:246
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):62, 27

               
               
               Conread position:16-362
               
               
               Cow position:chr22:19738891-19738546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:245
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):158, 54

               
               
               Conread position:16-363
               
               
               Cow position:chr22:8775818-8775469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):101, 276

               
               
               Conread position:16-367
               
               
               Cow position:chr22:30674836-30674485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:228
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):101, 158

               
               
               Conread position:16-372
               
               
               Cow position:chr22:30710084-30710438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:251
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):93, 71

               
               
               Conread position:16-372
               
               
               Cow position:chr22:41271311-41270968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 71

               
               
               Conread position:16-373
               
               
               Cow position:chr22:39747926-39747572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:233
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):86, 38

               
               
               Conread position:16-373
               
               
               Cow position:chr22:42923180-42922822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:234
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):101, 192

               
               
               Conread position:16-373
               
               
               Cow position:chr22:43948956-43948601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:237
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):47, 29

               
               
               Conread position:16-376
               
               
               Cow position:chr22:13011598-13011231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:252
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):93, 213

               
               
               Conread position:16-378
               
               
               Cow position:chr22:28179523-28179897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 51

               
               
               Conread position:16-391
               
               
               Cow position:chr22:14376712-14376360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:260
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):93, 57

               
               
               Conread position:16-397
               
               
               Cow position:chr22:4990492-4990109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:258
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):52, 46

               
               
               Conread position:16-397
               
               
               Cow position:chr22:12682116-12681742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:266
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):12, 111

               
               
               Conread position:16-399
               
               
               Cow position:chr22:3432916-3432533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:244
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):101, 74

               
               
               Conread position:16-399
               
               
               Cow position:chr22:16273313-16273701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):165, 92

               
               
               Conread position:16-399
               
               
               Cow position:chr22:26134553-26134163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 45

               
               
               Conread position:16-399
               
               
               Cow position:chr22:29290456-29290079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 5

               
               
               Conread position:16-400
               
               
               Cow position:chr22:26097931-26097558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:259
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):93, 37

               
               
               Conread position:16-404
               
               
               Cow position:chr22:7838284-7838656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 158

               
               
               Conread position:16-404
               
               
               Cow position:chr22:17993351-17992965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 143

               
               
               Conread position:16-404
               
               
               Cow position:chr22:21567686-21568062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):206, 18

               
               
               Conread position:16-407
               
               
               Cow position:chr22:911784-912167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:265
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):93, 17

               
               
               Conread position:16-422
               
               
               Cow position:chr22:42605313-42605721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 75

               
               
               Conread position:16-423
               
               
               Cow position:chr22:11258059-11257663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 208

               
               
               Conread position:16-424
               
               
               Cow position:chr22:43292223-43291816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 294

               
               
               Conread position:16-426
               
               
               Cow position:chr22:13688433-13688019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:282
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):98, 293

               
               
               Conread position:16-426
               
               
               Cow position:chr22:23805302-23804890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 35

               
               
               Conread position:16-430
               
               
               Cow position:chr22:16620858-16621268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 49

               
               
               Conread position:16-433
               
               
               Cow position:chr22:30514934-30515352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):332, 94

               
               
               Conread position:16-434
               
               
               Cow position:chr22:4645457-4645867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 19

               
               
               Conread position:16-434
               
               
               Cow position:chr22:10631054-10631484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):158, 94

               
               
               Conread position:16-434
               
               
               Cow position:chr22:11613107-11613520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):158, 88

               
               
               Conread position:16-434
               
               
               Cow position:chr22:27818679-27819096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 166

               
               
               Conread position:16-434
               
               
               Cow position:chr22:28071236-28071654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 29

               
               
               Conread position:16-439
               
               
               Cow position:chr22:40720608-40720193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:287
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):95, 208

               
               
               Conread position:16-447
               
               
               Cow position:chr22:8323926-8324345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 98

               
               
               Conread position:16-447
               
               
               Cow position:chr22:18837936-18838364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:293
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):89, 63

               
               
               Conread position:16-447
               
               
               Cow position:chr22:18926033-18926465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 49

               
               
               Conread position:16-448
               
               
               Cow position:chr22:4161929-4161511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:295
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):181, 78

               
               
               Conread position:16-448
               
               
               Cow position:chr22:10420688-10421143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 227

               
               
               Conread position:16-448
               
               
               Cow position:chr22:13840823-13841249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 12

               
               
               Conread position:16-448
               
               
               Cow position:chr22:16251887-16251463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 95

               
               
               Conread position:16-448
               
               
               Cow position:chr22:16532745-16533182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 204

               
               
               Conread position:16-449
               
               
               Cow position:chr22:877202-877626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 113

               
               
               Conread position:16-449
               
               
               Cow position:chr22:1326100-1326529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):102, 14

               
               
               Conread position:16-449
               
               
               Cow position:chr22:3842306-3842728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 5

               
               
               Conread position:16-449
               
               
               Cow position:chr22:16044750-16044305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 103

               
               
               Conread position:16-449
               
               
               Cow position:chr22:21012072-21012495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 44

               
               
               Conread position:16-449
               
               
               Cow position:chr22:22861232-22860801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 208

               
               
               Conread position:16-449
               
               
               Cow position:chr22:23176780-23176330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 278

               
               
               Conread position:16-449
               
               
               Cow position:chr22:27329206-27328782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 40

               
               
               Conread position:16-449
               
               
               Cow position:chr22:27577412-27577853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:296
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):93, 179

               
               
               Conread position:16-449
               
               
               Cow position:chr22:31646173-31646602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 158

               
               
               Conread position:16-449
               
               
               Cow position:chr22:33448407-33447970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 150

               
               
               Conread position:16-449
               
               
               Cow position:chr22:44717399-44717832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 48

               
               
               Conread position:16-450
               
               
               Cow position:chr22:6622566-6622137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 277

               
               
               Conread position:16-451
               
               
               Cow position:chr22:34894653-34895077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 57

               
               
               Conread position:16-451
               
               
               Cow position:chr22:43397698-43398113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):329, 156

               
               
               Conread position:16-455
               
               
               Cow position:chr22:40374285-40374724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 281

               
               
               Conread position:16-456
               
               
               Cow position:chr22:34712400-34712843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 46

               
               
               Conread position:16-460
               
               
               Cow position:chr22:1279707-1279263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 111

               
               
               Conread position:16-482
               
               
               Cow position:chr22:41927677-41927212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 217

               
               
               Conread position:16-487
               
               
               Cow position:chr22:5337918-5337450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:356
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 13

               
               
               Conread position:16-498
               
               
               Cow position:chr22:30483598-30484082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:499
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 11

               
               
               Conread position:16-502
               
               
               Cow position:chr22:590027-590501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:490
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 48

               
               
               Conread position:16-502
               
               
               Cow position:chr22:34398776-34398307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:491
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 158

               
               
               Conread position:16-503
               
               
               Cow position:chr22:42946387-42945889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 101

               
               
               Conread position:16-503
               
               
               Cow position:chr22:45355053-45355541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:504
               
               
               Alignm identity:329
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):48, 170

               
               
               Conread position:16-504
               
               
               Cow position:chr22:29955318-29954832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:504
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 36

               
               
               Conread position:16-504
               
               
               Cow position:chr22:44835324-44835820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 50

               
               
               Conread position:16-506
               
               
               Cow position:chr22:23010253-23009776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:496
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):99, 63

               
               
               Conread position:16-507
               
               
               Cow position:chr22:1064814-1065294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:501
               
               
               Alignm identity:315
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):93, 148

               
               
               Conread position:16-507
               
               
               Cow position:chr22:5467689-5467178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:518
               
               
               Alignm identity:353
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 70

               
               
               Conread position:16-507
               
               
               Cow position:chr22:10532175-10532680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:515
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 211

               
               
               Conread position:16-507
               
               
               Cow position:chr22:25943160-25943646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:498
               
               
               Alignm identity:362
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 155

               
               
               Conread position:16-507
               
               
               Cow position:chr22:36539996-36539472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:535
               
               
               Alignm identity:357
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):43, 90

               
               
               Conread position:16-507
               
               
               Cow position:chr22:41045235-41044722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:521
               
               
               Alignm identity:352
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 139

               
               
               Conread position:16-508
               
               
               Cow position:chr22:3960617-3960112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:516
               
               
               Alignm identity:357
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 293

               
               
               Conread position:16-508
               
               
               Cow position:chr22:9977496-9977982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 90

               
               
               Conread position:16-508
               
               
               Cow position:chr22:13300099-13300576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:499
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):177, 88

               
               
               Conread position:16-508
               
               
               Cow position:chr22:14844245-14844732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:354
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 100

               
               
               Conread position:16-508
               
               
               Cow position:chr22:20626521-20627021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:355
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 57

               
               
               Conread position:16-508
               
               
               Cow position:chr22:25476745-25477216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:495
               
               
               Alignm identity:359
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 27

               
               
               Conread position:16-508
               
               
               Cow position:chr22:30698859-30699353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:502
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 69

               
               
               Conread position:16-508
               
               
               Cow position:chr22:41244921-41245419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:385
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 117

               
               
               Conread position:17-269
               
               
               Cow position:chr22:34931073-34930811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:193
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):44, 213

               
               
               Conread position:17-288
               
               
               Cow position:chr22:16235970-16235697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):25, 30

               
               
               Conread position:17-397
               
               
               Cow position:chr22:7157916-7158292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:247
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):92, 157

               
               
               Conread position:17-399
               
               
               Cow position:chr22:1484542-1484924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 210

               
               
               Conread position:17-408
               
               
               Cow position:chr22:39472696-39472294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 210

               
               
               Conread position:17-418
               
               
               Cow position:chr22:7153561-7153961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 78

               
               
               Conread position:17-427
               
               
               Cow position:chr22:1610076-1609681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 173

               
               
               Conread position:17-449
               
               
               Cow position:chr22:34441966-34441518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:311
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):42, 115

               
               
               Conread position:17-449
               
               
               Cow position:chr22:40071649-40072088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:296
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):92, 215

               
               
               Conread position:17-449
               
               
               Cow position:chr22:44180273-44180704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 157

               
               
               Conread position:17-462
               
               
               Cow position:chr22:23856728-23857170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 211

               
               
               Conread position:17-464
               
               
               Cow position:chr22:18021338-18020907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:295
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):77, 44

               
               
               Conread position:17-469
               
               
               Cow position:chr22:15398896-15398447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 38

               
               
               Conread position:17-505
               
               
               Cow position:chr22:19340880-19341379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:338
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):43, 95

               
               
               Conread position:17-508
               
               
               Cow position:chr22:10294732-10295216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:336
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):92, 44

               
               
               Conread position:17-508
               
               
               Cow position:chr22:10685399-10684910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:504
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):327, 37

               
               
               Conread position:18-293
               
               
               Cow position:chr22:14601202-14601461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:203
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):91, 36

               
               
               Conread position:18-296
               
               
               Cow position:chr22:25658854-25658571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:198
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:18-393
               
               
               Cow position:chr22:11746220-11745850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 17

               
               
               Conread position:18-439
               
               
               Cow position:chr22:42933807-42933391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:289
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):91, 283

               
               
               Conread position:18-447
               
               
               Cow position:chr22:8412205-8412637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 213

               
               
               Conread position:18-447
               
               
               Cow position:chr22:46568208-46567785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 156

               
               
               Conread position:18-448
               
               
               Cow position:chr22:8840268-8840715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):156, 0

               
               
               Conread position:18-448
               
               
               Cow position:chr22:27322004-27322420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 27

               
               
               Conread position:18-449
               
               
               Cow position:chr22:1266258-1265813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 94

               
               
               Conread position:18-449
               
               
               Cow position:chr22:8882700-8883122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 23

               
               
               Conread position:18-449
               
               
               Cow position:chr22:10920180-10919744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 35

               
               
               Conread position:18-449
               
               
               Cow position:chr22:13670486-13670059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 36

               
               
               Conread position:18-449
               
               
               Cow position:chr22:24611395-24610983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 137

               
               
               Conread position:18-449
               
               
               Cow position:chr22:26316160-26316567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):204, 69

               
               
               Conread position:18-449
               
               
               Cow position:chr22:27581131-27581550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):204, 43

               
               
               Conread position:18-449
               
               
               Cow position:chr22:45845806-45846252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 225

               
               
               Conread position:18-508
               
               
               Cow position:chr22:26184479-26183994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:493
               
               
               Alignm identity:381
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 123

               
               
               Conread position:19-449
               
               
               Cow position:chr22:32661198-32661620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:291
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):202, 89

               
               
               Conread position:21-448
               
               
               Cow position:chr22:4076214-4075776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 149

               
               
               Conread position:22-449
               
               
               Cow position:chr22:4017160-4017584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 201

               
               
               Conread position:22-449
               
               
               Cow position:chr22:13957963-13957533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 56

               
               
               Conread position:27-448
               
               
               Cow position:chr22:34726364-34726774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):197, 210

               
               
               Conread position:27-505
               
               
               Cow position:chr22:21746329-21746823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:500
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 121

               
               
               Conread position:29-491
               
               
               Cow position:chr22:1122-1569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:306
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):84, 193

               
               
               Conread position:30-434
               
               
               Cow position:chr22:2502531-2502921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 73

               
               
               Conread position:31-369
               
               
               Cow position:chr22:26490153-26490492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 134

               
               
               Conread position:33-293
               
               
               Cow position:chr22:8063628-8063367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):79, 51

               
               
               Conread position:33-449
               
               
               Cow position:chr22:5290540-5290961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 125

               
               
               Conread position:39-470
               
               
               Cow position:chr22:11130573-11131000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 26

               
               
               Conread position:41-399
               
               
               Cow position:chr22:3993314-3993670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:245
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):61, 182

               
               
               Conread position:41-449
               
               
               Cow position:chr22:3949945-3950363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 278

               
               
               Conread position:43-507
               
               
               Cow position:chr22:13769185-13769639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:326
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):17, 65

               
               
               Conread position:45-507
               
               
               Cow position:chr22:2912987-2913445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 150

               
               
               Conread position:47-508
               
               
               Cow position:chr22:645050-644593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 49

               
               
               Conread position:48-449
               
               
               Cow position:chr22:3316840-3317231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 65

               
               
               Conread position:56-449
               
               
               Cow position:chr22:15490380-15490765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 17

               
               
               Conread position:58-269
               
               
               Cow position:chr22:31513373-31513153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:158
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:58-438
               
               
               Cow position:chr22:1975334-1975709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 6

               
               
               Conread position:59-434
               
               
               Cow position:chr22:7967421-7967798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:260
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):48, 5

               
               
               Conread position:60-447
               
               
               Cow position:chr22:15568297-15567907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:267
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):6, 33

               
               
               Conread position:65-448
               
               
               Cow position:chr22:37324275-37324652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 58

               
               
               Conread position:66-283
               
               
               Cow position:chr22:3283203-3282985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):43, 19

               
               
               Conread position:66-427
               
               
               Cow position:chr22:26339488-26339843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 109

               
               
               Conread position:66-428
               
               
               Cow position:chr22:35382522-35382165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 88

               
               
               Conread position:66-434
               
               
               Cow position:chr22:24509931-24509567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:263
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):51, 80

               
               
               Conread position:66-434
               
               
               Cow position:chr22:30111226-30111594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:240
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):43, 21

               
               
               Conread position:66-443
               
               
               Cow position:chr22:25237407-25237035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:273
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):159, 32

               
               
               Conread position:66-449
               
               
               Cow position:chr22:37201586-37201959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 70

               
               
               Conread position:66-500
               
               
               Cow position:chr22:4650910-4651341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 156

               
               
               Conread position:66-508
               
               
               Cow position:chr22:29441525-29441095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:300
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):105, 42

               
               
               Conread position:67-347
               
               
               Cow position:chr22:6360758-6360479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):47, 127

               
               
               Conread position:67-471
               
               
               Cow position:chr22:22997205-22997609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 125

               
               
               Conread position:68-447
               
               
               Cow position:chr22:6215823-6215447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 86

               
               
               Conread position:69-449
               
               
               Cow position:chr22:26141006-26141385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 18

               
               
               Conread position:70-447
               
               
               Cow position:chr22:32894936-32895327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 166

               
               
               Conread position:70-448
               
               
               Cow position:chr22:46611048-46610671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:259
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):41, 169

               
               
               Conread position:70-449
               
               
               Cow position:chr22:9372253-9372632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 54

               
               
               Conread position:70-508
               
               
               Cow position:chr22:9520883-9521302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):275, 37

               
               
               Conread position:70-508
               
               
               Cow position:chr22:25222166-25221715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 12

               
               
               Conread position:70-508
               
               
               Cow position:chr22:25743220-25742778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 153

               
               
               Conread position:71-334
               
               
               Cow position:chr22:35902960-35902702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:182
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):43, 82

               
               
               Conread position:71-404
               
               
               Cow position:chr22:19775691-19775366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 116

               
               
               Conread position:71-428
               
               
               Cow position:chr22:23833030-23833386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:246
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):36, 73

               
               
               Conread position:71-434
               
               
               Cow position:chr22:22612845-22613201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:247
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):29, 120

               
               
               Conread position:71-447
               
               
               Cow position:chr22:34750411-34750782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 152

               
               
               Conread position:71-448
               
               
               Cow position:chr22:28058307-28057940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):264, 52

               
               
               Conread position:71-478
               
               
               Cow position:chr22:23861409-23861016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):172, 37

               
               
               Conread position:71-508
               
               
               Cow position:chr22:534227-534677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 233

               
               
               Conread position:72-443
               
               
               Cow position:chr22:38980642-38980991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:253
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):276, 38

               
               
               Conread position:73-323
               
               
               Cow position:chr22:29091136-29090906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:184
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):26, 36

               
               
               Conread position:73-395
               
               
               Cow position:chr22:31196760-31196444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):38, 103

               
               
               Conread position:74-431
               
               
               Cow position:chr22:43044427-43044075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:240
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):149, 36

               
               
               Conread position:74-508
               
               
               Cow position:chr22:14179094-14178644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:305
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):40, 152

               
               
               Conread position:75-439
               
               
               Cow position:chr22:7518154-7518520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:240
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):34, 158

               
               
               Conread position:75-504
               
               
               Cow position:chr22:42612196-42612625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 134

               
               
               Conread position:76-415
               
               
               Cow position:chr22:31593122-31592779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 297

               
               
               Conread position:77-286
               
               
               Cow position:chr22:44386658-44386456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):32, 45

               
               
               Conread position:77-430
               
               
               Cow position:chr22:35753566-35753218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:250
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):32, 80

               
               
               Conread position:77-434
               
               
               Cow position:chr22:3325321-3325684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 132

               
               
               Conread position:77-434
               
               
               Cow position:chr22:28146424-28146772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:248
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):32, 156

               
               
               Conread position:77-447
               
               
               Cow position:chr22:28665008-28665392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 236

               
               
               Conread position:77-449
               
               
               Cow position:chr22:11697469-11697084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:257
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):28, 10

               
               
               Conread position:77-449
               
               
               Cow position:chr22:13286183-13286559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:260
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):28, 280

               
               
               Conread position:77-449
               
               
               Cow position:chr22:24066495-24066122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 145

               
               
               Conread position:77-473
               
               
               Cow position:chr22:13274213-13274615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:266
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):166, 103

               
               
               Conread position:77-505
               
               
               Cow position:chr22:19048063-19047647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):268, 68

               
               
               Conread position:77-506
               
               
               Cow position:chr22:23181294-23180860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:300
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):271, 148

               
               
               Conread position:77-508
               
               
               Cow position:chr22:14371907-14372355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:313
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):34, 223

               
               
               Conread position:78-408
               
               
               Cow position:chr22:36563283-36562949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:220
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):37, 218

               
               
               Conread position:78-451
               
               
               Cow position:chr22:27274950-27274587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:229
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):96, 144

               
               
               Conread position:78-508
               
               
               Cow position:chr22:27223874-27224296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 116

               
               
               Conread position:79-361
               
               
               Cow position:chr22:35520521-35520233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:203
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):30, 149

               
               
               Conread position:79-447
               
               
               Cow position:chr22:26658797-26659151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 141

               
               
               Conread position:79-448
               
               
               Cow position:chr22:12968327-12967959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 83

               
               
               Conread position:79-449
               
               
               Cow position:chr22:5596047-5595700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:252
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):319, 107

               
               
               Conread position:79-466
               
               
               Cow position:chr22:34606335-34606716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:265
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):142, 29

               
               
               Conread position:79-506
               
               
               Cow position:chr22:22029618-22029212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:294
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):30, 82

               
               
               Conread position:79-507
               
               
               Cow position:chr22:19653239-19652803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 35

               
               
               Conread position:80-384
               
               
               Cow position:chr22:25630028-25629718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:219
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):12, 225

               
               
               Conread position:80-408
               
               
               Cow position:chr22:23854724-23855042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:231
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):29, 75

               
               
               Conread position:81-346
               
               
               Cow position:chr22:28731430-28731683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:189
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):30, 15

               
               
               Conread position:81-451
               
               
               Cow position:chr22:17295184-17294824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 33

               
               
               Conread position:81-508
               
               
               Cow position:chr22:30269159-30269589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:299
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):32, 50

               
               
               Conread position:81-508
               
               
               Cow position:chr22:45291077-45291490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:285
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):20, 144

               
               
               Conread position:82-449
               
               
               Cow position:chr22:8116337-8115977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:247
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):27, 62

               
               
               Conread position:84-434
               
               
               Cow position:chr22:40048310-40048650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:247
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):25, 90

               
               
               Conread position:84-448
               
               
               Cow position:chr22:6328018-6327658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:249
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):15, 75

               
               
               Conread position:84-471
               
               
               Cow position:chr22:40121132-40120752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 177

               
               
               Conread position:87-427
               
               
               Cow position:chr22:7851709-7852053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:244
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):24, 201

               
               
               Conread position:89-390
               
               
               Cow position:chr22:3253184-3252914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:89-505
               
               
               Cow position:chr22:26941550-26941954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 84

               
               
               Conread position:89-508
               
               
               Cow position:chr22:4753972-4753587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:295
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):62, 16

               
               
               Conread position:90-450
               
               
               Cow position:chr22:45930941-45931270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:241
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):250, 18

               
               
               Conread position:95-397
               
               
               Cow position:chr22:15068183-15068485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):20, 179

               
               
               Conread position:96-300
               
               
               Cow position:chr22:4026367-4026570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):13, 27

               
               
               Conread position:96-368
               
               
               Cow position:chr22:22145987-22146263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):75, 211

               
               
               Conread position:96-369
               
               
               Cow position:chr22:27550115-27550387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:188
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):21, 196

               
               
               Conread position:96-427
               
               
               Cow position:chr22:23403882-23403553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:240
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):13, 72

               
               
               Conread position:96-451
               
               
               Cow position:chr22:3964948-3965299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 12

               
               
               Conread position:96-464
               
               
               Cow position:chr22:39293988-39293618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:257
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):13, 128

               
               
               Conread position:96-506
               
               
               Cow position:chr22:5622959-5622556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 127

               
               
               Conread position:96-508
               
               
               Cow position:chr22:5384414-5384822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 78

               
               
               Conread position:97-337
               
               
               Cow position:chr22:37554867-37554622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):8, 130

               
               
               Conread position:98-353
               
               
               Cow position:chr22:12777821-12777577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:185
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):9, 140

               
               
               Conread position:98-434
               
               
               Cow position:chr22:12946404-12946086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:240
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):11, 76

               
               
               Conread position:98-448
               
               
               Cow position:chr22:47555606-47555958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:236
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):14, 71

               
               
               Conread position:98-506
               
               
               Cow position:chr22:25714773-25715172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):210, 121

               
               
               Conread position:98-508
               
               
               Cow position:chr22:36632997-36633388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:267
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):173, 10

               
               
               Conread position:99-449
               
               
               Cow position:chr22:14691214-14690860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 191

               
               
               Conread position:100-347
               
               
               Cow position:chr22:20687056-20687310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):9, 208

               
               
               Conread position:105-408
               
               
               Cow position:chr22:27825606-27825910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:211
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):124, 189

               
               
               Conread position:110-434
               
               
               Cow position:chr22:22222967-22223282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:222
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):238, 78

               
               
               Conread position:111-397
               
               
               Cow position:chr22:15153783-15154059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:194
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):217, 42

               
               
               Conread position:112-385
               
               
               Cow position:chr22:15665992-15666259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:190
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):131, 56

               
               
               Conread position:113-448
               
               
               Cow position:chr22:18126957-18126625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:239
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):82, 59

               
               
               Conread position:113-475
               
               
               Cow position:chr22:33918121-33917780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:224
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):107, 87

               
               
               Conread position:113-477
               
               
               Cow position:chr22:14118752-14119115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 111

               
               
               Conread position:114-499
               
               
               Cow position:chr22:20862970-20862585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:279
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):106, 39

               
               
               Conread position:117-294
               
               
               Cow position:chr22:3944956-3945134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:125
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:123-433
               
               
               Cow position:chr22:27047612-27047318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:213
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):274, 47

               
               
               Conread position:123-505
               
               
               Cow position:chr22:15358026-15358412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 164

               
               
               Conread position:124-321
               
               
               Cow position:chr22:27512374-27512178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):92, 62

               
               
               Conread position:125-505
               
               
               Cow position:chr22:23581046-23580679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):193, 95

               
               
               Conread position:126-304
               
               
               Cow position:chr22:2945881-2945702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):167, 0

               
               
               Conread position:127-331
               
               
               Cow position:chr22:1081295-1081497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:160
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):39, 50

               
               
               Conread position:127-343
               
               
               Cow position:chr22:18219102-18218886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):46, 173

               
               
               Conread position:127-441
               
               
               Cow position:chr22:17125374-17125685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:223
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):88, 66

               
               
               Conread position:130-508
               
               
               Cow position:chr22:8398020-8397657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):267, 141

               
               
               Conread position:131-469
               
               
               Cow position:chr22:15025308-15024981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:235
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):217, 36

               
               
               Conread position:132-449
               
               
               Cow position:chr22:41853693-41854018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:212
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):126, 93

               
               
               Conread position:134-399
               
               
               Cow position:chr22:8429681-8429947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:177
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):40, 155

               
               
               Conread position:136-438
               
               
               Cow position:chr22:16650402-16650099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):36, 88

               
               
               Conread position:136-506
               
               
               Cow position:chr22:2523763-2524136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 86

               
               
               Conread position:139-451
               
               
               Cow position:chr22:1848868-1849187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 163

               
               
               Conread position:140-508
               
               
               Cow position:chr22:12315616-12315995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):208, 154

               
               
               Conread position:143-448
               
               
               Cow position:chr22:27828193-27828488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:200
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):16, 31

               
               
               Conread position:144-457
               
               
               Cow position:chr22:12388902-12389217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:223
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):73, 5

               
               
               Conread position:145-316
               
               
               Cow position:chr22:3541908-3541743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:146-443
               
               
               Cow position:chr22:11458640-11458920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:215
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):205, 15

               
               
               Conread position:146-448
               
               
               Cow position:chr22:14378868-14378586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:205
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):202, 73

               
               
               Conread position:146-507
               
               
               Cow position:chr22:16292105-16291746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:245
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):251, 15

               
               
               Conread position:157-393
               
               
               Cow position:chr22:10678163-10677937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):30, 69

               
               
               Conread position:157-449
               
               
               Cow position:chr22:3533768-3534044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:207
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):191, 15

               
               
               Conread position:160-412
               
               
               Cow position:chr22:17132585-17132336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):168, 71

               
               
               Conread position:161-443
               
               
               Cow position:chr22:9283772-9283494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:201
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):188, 48

               
               
               Conread position:165-443
               
               
               Cow position:chr22:27740718-27740995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):28, 140

               
               
               Conread position:166-508
               
               
               Cow position:chr22:18487079-18486760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:227
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):174, 61

               
               
               Conread position:168-434
               
               
               Cow position:chr22:33399648-33399393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):176, 52

               
               
               Conread position:170-395
               
               
               Cow position:chr22:9668400-9668632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:167
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:171-396
               
               
               Cow position:chr22:19173535-19173753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:161
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):138, 49

               
               
               Conread position:171-449
               
               
               Cow position:chr22:34618636-34618909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):173, 23

               
               
               Conread position:172-346
               
               
               Cow position:chr22:12598924-12599093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):78, 47

               
               
               Conread position:172-352
               
               
               Cow position:chr22:11497030-11497214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):49, 130

               
               
               Conread position:172-417
               
               
               Cow position:chr22:3241859-3241624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:176
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):82, 21

               
               
               Conread position:172-449
               
               
               Cow position:chr22:6097188-6096906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:203
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):43, 111

               
               
               Conread position:172-505
               
               
               Cow position:chr22:33386667-33386344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):144, 53

               
               
               Conread position:172-507
               
               
               Cow position:chr22:12313260-12313606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:228
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):176, 144

               
               
               Conread position:174-424
               
               
               Cow position:chr22:27835369-27835619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:182
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):56, 46

               
               
               Conread position:174-485
               
               
               Cow position:chr22:139465-139161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:224
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):69, 140

               
               
               Conread position:176-508
               
               
               Cow position:chr22:9466450-9466778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 45

               
               
               Conread position:177-470
               
               
               Cow position:chr22:7102674-7102964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 137

               
               
               Conread position:178-350
               
               
               Cow position:chr22:10292805-10292979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):51, 131

               
               
               Conread position:187-359
               
               
               Cow position:chr22:26506872-26506704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):158, 33

               
               
               Conread position:188-508
               
               
               Cow position:chr22:15668621-15668295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:229
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):69, 178

               
               
               Conread position:191-421
               
               
               Cow position:chr22:15928788-15928568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):156, 47

               
               
               Conread position:192-378
               
               
               Cow position:chr22:22553378-22553201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:140
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:192-440
               
               
               Cow position:chr22:11767193-11766948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:178
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):28, 101

               
               
               Conread position:193-449
               
               
               Cow position:chr22:25539849-25540110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:186
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):36, 110

               
               
               Conread position:193-508
               
               
               Cow position:chr22:34735726-34736036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:217
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):109, 26

               
               
               Conread position:196-355
               
               
               Cow position:chr22:15020541-15020382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):24, 103

               
               
               Conread position:198-397
               
               
               Cow position:chr22:21325871-21325675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:143
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):19, 100

               
               
               Conread position:199-508
               
               
               Cow position:chr22:44410590-44410904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:223
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):149, 20

               
               
               Conread position:201-448
               
               
               Cow position:chr22:25387190-25387437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:174
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):111, 18

               
               
               Conread position:204-404
               
               
               Cow position:chr22:26264362-26264163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):39, 78

               
               
               Conread position:206-449
               
               
               Cow position:chr22:12678559-12678311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):23, 108

               
               
               Conread position:206-449
               
               
               Cow position:chr22:12929404-12929170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:170
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):142, 93

               
               
               Conread position:208-462
               
               
               Cow position:chr22:12535911-12535659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:174
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):21, 123

               
               
               Conread position:209-504
               
               
               Cow position:chr22:9597706-9597401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:219
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):131, 31

               
               
               Conread position:209-508
               
               
               Cow position:chr22:15914843-15914564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:212
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):42, 23

               
               
               Conread position:211-448
               
               
               Cow position:chr22:43237532-43237298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):136, 79

               
               
               Conread position:214-399
               
               
               Cow position:chr22:27619607-27619794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:131
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):72, 108

               
               
               Conread position:214-438
               
               
               Cow position:chr22:4011062-4011285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:154
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):131, 74

               
               
               Conread position:216-439
               
               
               Cow position:chr22:12892488-12892265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):13, 35

               
               
               Conread position:216-452
               
               
               Cow position:chr22:6936145-6936370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):105, 23

               
               
               Conread position:219-493
               
               
               Cow position:chr22:43352302-43352033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:185
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):32, 87

               
               
               Conread position:222-449
               
               
               Cow position:chr22:3282936-3282716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):126, 5

               
               
               Conread position:224-426
               
               
               Cow position:chr22:6852695-6852496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):92, 72

               
               
               Conread position:224-448
               
               
               Cow position:chr22:10609242-10609466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):124, 187

               
               
               Conread position:224-451
               
               
               Cow position:chr22:13094286-13094505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):107, 56

               
               
               Conread position:224-503
               
               
               Cow position:chr22:1911558-1911833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:201
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):124, 16

               
               
               Conread position:224-507
               
               
               Cow position:chr22:5837156-5837448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:199
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):124, 78

               
               
               Conread position:226-449
               
               
               Cow position:chr22:16541764-16541541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):23, 67

               
               
               Conread position:227-482
               
               
               Cow position:chr22:26760606-26760856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:177
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):24, 36

               
               
               Conread position:228-508
               
               
               Cow position:chr22:4135510-4135781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:200
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):120, 56

               
               
               Conread position:230-450
               
               
               Cow position:chr22:13222006-13222229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):118, 83

               
               
               Conread position:235-449
               
               
               Cow position:chr22:25254075-25254283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):113, 5

               
               
               Conread position:237-449
               
               
               Cow position:chr22:26074823-26075032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):91, 42

               
               
               Conread position:237-507
               
               
               Cow position:chr22:37030620-37030337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):73, 84

               
               
               Conread position:242-449
               
               
               Cow position:chr22:24915743-24915948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):91, 52

               
               
               Conread position:242-449
               
               
               Cow position:chr22:29389680-29389890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:142
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):66, 49

               
               
               Conread position:242-508
               
               
               Cow position:chr22:5928055-5927795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:197
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):87, 70

               
               
               Conread position:243-426
               
               
               Cow position:chr22:13188062-13188241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):11, 65

               
               
               Conread position:243-449
               
               
               Cow position:chr22:23750986-23750786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):105, 53

               
               
               Conread position:244-434
               
               
               Cow position:chr22:18293853-18293669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):150, 50

               
               
               Conread position:244-486
               
               
               Cow position:chr22:34104767-34104523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:162
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):105, 58

               
               
               Conread position:245-508
               
               
               Cow position:chr22:27508553-27508829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:197
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):36, 169

               
               
               Conread position:248-449
               
               
               Cow position:chr22:39602192-39602393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):100, 48

               
               
               Conread position:249-449
               
               
               Cow position:chr22:10285880-10286081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:152
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):27, 67

               
               
               Conread position:250-427
               
               
               Cow position:chr22:25690367-25690186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):98, 53

               
               
               Conread position:250-432
               
               
               Cow position:chr22:14006096-14006271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:142
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):95, 52

               
               
               Conread position:250-446
               
               
               Cow position:chr22:26122811-26123005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:147
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):98, 55

               
               
               Conread position:250-447
               
               
               Cow position:chr22:18933806-18933605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):65, 12

               
               
               Conread position:250-451
               
               
               Cow position:chr22:1659076-1659276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):95, 16

               
               
               Conread position:250-496
               
               
               Cow position:chr22:21349601-21349363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:179
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:250-503
               
               
               Cow position:chr22:12749985-12749730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:189
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):101, 25

               
               
               Conread position:250-508
               
               
               Cow position:chr22:34675435-34675689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:176
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):99, 51

               
               
               Conread position:251-497
               
               
               Cow position:chr22:10553770-10553522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:188
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):97, 55

               
               
               Conread position:252-442
               
               
               Cow position:chr22:28290035-28290221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:136
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):96, 39

               
               
               Conread position:254-426
               
               
               Cow position:chr22:29344796-29344966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):143, 15

               
               
               Conread position:257-452
               
               
               Cow position:chr22:13735094-13734906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:139
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):94, 23

               
               
               Conread position:258-423
               
               
               Cow position:chr22:36280163-36280327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):91, 48

               
               
               Conread position:258-451
               
               
               Cow position:chr22:9171327-9171521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):91, 38

               
               
               Conread position:258-451
               
               
               Cow position:chr22:10533515-10533706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:140
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):52, 104

               
               
               Conread position:259-434
               
               
               Cow position:chr22:42617921-42618096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:124
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):90, 46

               
               
               Conread position:262-503
               
               
               Cow position:chr22:35029191-35029442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:183
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:263-478
               
               
               Cow position:chr22:29185681-29185471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):82, 41

               
               
               Conread position:267-434
               
               
               Cow position:chr22:45752740-45752908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):42, 139

               
               
               Conread position:268-443
               
               
               Cow position:chr22:28704116-28704289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):80, 37

               
               
               Conread position:268-449
               
               
               Cow position:chr22:13878116-13878288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):129, 28

               
               
               Conread position:268-508
               
               
               Cow position:chr22:15424073-15424304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:180
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):81, 24

               
               
               Conread position:271-508
               
               
               Cow position:chr22:28672079-28672322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:183
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):78, 29

               
               
               Conread position:272-508
               
               
               Cow position:chr22:2434147-2434383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):72, 31

               
               
               Conread position:290-448
               
               
               Cow position:chr22:12188534-12188371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:290-488
               
               
               Cow position:chr22:12195621-12195420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):36, 180

               
               
               Conread position:291-508
               
               
               Cow position:chr22:16234106-16234324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):58, 30

               
               
               Conread position:299-508
               
               
               Cow position:chr22:22999553-22999761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):19, 30

               
               
               Conread position:301-448
               
               
               Cow position:chr22:11352491-11352342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:302-508
               
               
               Cow position:chr22:31192609-31192408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):47, 27

               
               
               Conread position:303-451
               
               
               Cow position:chr22:7832392-7832242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:114
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):7, 145

               
               
               Conread position:305-490
               
               
               Cow position:chr22:14509512-14509321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:306-449
               
               
               Cow position:chr22:14381625-14381770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:306-506
               
               
               Cow position:chr22:39983229-39983029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:137
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):43, 25

               
               
               Conread position:307-469
               
               
               Cow position:chr22:11344477-11344643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:119
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:308-448
               
               
               Cow position:chr22:4156849-4156707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:106
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:309-508
               
               
               Cow position:chr22:17184717-17184516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:158
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:311-508
               
               
               Cow position:chr22:876247-876449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:156
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:313-504
               
               
               Cow position:chr22:29842731-29842537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:322-485
               
               
               Cow position:chr22:4036564-4036726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:120
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):27, 52

               
               
               Conread position:322-504
               
               
               Cow position:chr22:1081770-1081954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:322-508
               
               
               Cow position:chr22:7287492-7287681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:137
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:327-508
               
               
               Cow position:chr22:4026811-4026987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):72, 15

               
               
               Conread position:332-508
               
               
               Cow position:chr22:33592439-33592264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):17, 68

               
               
               Conread position:338-482
               
               
               Cow position:chr22:18339942-18339795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:121
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:349-508
               
               
               Cow position:chr22:11878030-11877874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:115
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:350-508
               
               
               Cow position:chr22:25168279-25168124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):7, 17

               
               
               Conread position:352-503
               
               
               Cow position:chr22:37554500-37554352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:111
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:352-508
               
               
               Cow position:chr22:29256615-29256772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:353-508
               
               
               Cow position:chr22:11174137-11173984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:122
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):46, 98

               
               
               Conread position:354-508
               
               
               Cow position:chr22:29090389-29090232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):43, 91

               
               
               Conread position:11-419
               
               
               Cow position:chr23:16058278-16058677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 214

               
               
               Conread position:11-447
               
               
               Cow position:chr23:14164725-14164280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 162

               
               
               Conread position:11-507
               
               
               Cow position:chr23:5389387-5389873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:365
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 17

               
               
               Conread position:12-383
               
               
               Cow position:chr23:615222-614852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:249
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):24, 43

               
               
               Conread position:15-296
               
               
               Cow position:chr23:32961693-32961400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:210
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):64, 96

               
               
               Conread position:15-342
               
               
               Cow position:chr23:18367379-18367708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 72

               
               
               Conread position:15-449
               
               
               Cow position:chr23:1254353-1254804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 151

               
               
               Conread position:16-284
               
               
               Cow position:chr23:40774224-40774498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:182
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):83, 250

               
               
               Conread position:16-352
               
               
               Cow position:chr23:14191236-14191573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 63

               
               
               Conread position:16-358
               
               
               Cow position:chr23:23470635-23470961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:238
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):51, 95

               
               
               Conread position:16-365
               
               
               Cow position:chr23:8308639-8308288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:225
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):101, 295

               
               
               Conread position:16-367
               
               
               Cow position:chr23:4855952-4855598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:228
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):89, 277

               
               
               Conread position:16-373
               
               
               Cow position:chr23:3286641-3287001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:235
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):83, 222

               
               
               Conread position:16-383
               
               
               Cow position:chr23:645001-645378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:263
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):38, 12

               
               
               Conread position:16-392
               
               
               Cow position:chr23:7402390-7402760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 155

               
               
               Conread position:16-397
               
               
               Cow position:chr23:3727715-3727321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:264
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):95, 45

               
               
               Conread position:16-397
               
               
               Cow position:chr23:36129214-36128850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:270
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):91, 29

               
               
               Conread position:16-399
               
               
               Cow position:chr23:2021770-2021396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:247
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):158, 49

               
               
               Conread position:16-399
               
               
               Cow position:chr23:21789087-21788701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:264
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):93, 263

               
               
               Conread position:16-399
               
               
               Cow position:chr23:27996822-27997194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:265
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):95, 51

               
               
               Conread position:16-403
               
               
               Cow position:chr23:416854-417218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:273
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):332, 48

               
               
               Conread position:16-413
               
               
               Cow position:chr23:7175307-7175691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 45

               
               
               Conread position:16-422
               
               
               Cow position:chr23:15710393-15709982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 117

               
               
               Conread position:16-426
               
               
               Cow position:chr23:10852739-10853139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 45

               
               
               Conread position:16-426
               
               
               Cow position:chr23:28052961-28053365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 174

               
               
               Conread position:16-427
               
               
               Cow position:chr23:10014232-10014624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 45

               
               
               Conread position:16-427
               
               
               Cow position:chr23:32309365-32309780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 147

               
               
               Conread position:16-432
               
               
               Cow position:chr23:10415340-10414924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 34

               
               
               Conread position:16-434
               
               
               Cow position:chr23:11844974-11845377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 50

               
               
               Conread position:16-434
               
               
               Cow position:chr23:13511420-13511827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 50

               
               
               Conread position:16-439
               
               
               Cow position:chr23:20752697-20753113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 206

               
               
               Conread position:16-447
               
               
               Cow position:chr23:21336805-21336369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 158

               
               
               Conread position:16-447
               
               
               Cow position:chr23:25864995-25864583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 50

               
               
               Conread position:16-447
               
               
               Cow position:chr23:34315284-34314842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:306
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):53, 75

               
               
               Conread position:16-448
               
               
               Cow position:chr23:1924149-1923722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 93

               
               
               Conread position:16-448
               
               
               Cow position:chr23:11128917-11129348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 14

               
               
               Conread position:16-448
               
               
               Cow position:chr23:25675985-25675582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:296
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):93, 29

               
               
               Conread position:16-449
               
               
               Cow position:chr23:533917-534344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 51

               
               
               Conread position:16-449
               
               
               Cow position:chr23:1398350-1397922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 80

               
               
               Conread position:16-449
               
               
               Cow position:chr23:5162111-5162546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 41

               
               
               Conread position:16-449
               
               
               Cow position:chr23:6995282-6994866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):298, 38

               
               
               Conread position:16-449
               
               
               Cow position:chr23:9734103-9734525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):332, 94

               
               
               Conread position:16-449
               
               
               Cow position:chr23:10554327-10553892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 209

               
               
               Conread position:16-449
               
               
               Cow position:chr23:18698342-18697909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 175

               
               
               Conread position:16-449
               
               
               Cow position:chr23:20435368-20434947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 167

               
               
               Conread position:16-449
               
               
               Cow position:chr23:22804408-22804841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 64

               
               
               Conread position:16-449
               
               
               Cow position:chr23:26986595-26986155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 5

               
               
               Conread position:16-449
               
               
               Cow position:chr23:40777947-40778380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 87

               
               
               Conread position:16-451
               
               
               Cow position:chr23:1289987-1290416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:287
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):158, 45

               
               
               Conread position:16-452
               
               
               Cow position:chr23:6223694-6224093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:301
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):332, 17

               
               
               Conread position:16-453
               
               
               Cow position:chr23:14739137-14739568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):148, 50

               
               
               Conread position:16-464
               
               
               Cow position:chr23:40862036-40862478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):97, 61

               
               
               Conread position:16-484
               
               
               Cow position:chr23:26319102-26319547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 55

               
               
               Conread position:16-502
               
               
               Cow position:chr23:39752798-39753290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:501
               
               
               Alignm identity:356
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 209

               
               
               Conread position:16-506
               
               
               Cow position:chr23:20586028-20585528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:358
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 128

               
               
               Conread position:16-507
               
               
               Cow position:chr23:1337630-1337114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:526
               
               
               Alignm identity:360
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 114

               
               
               Conread position:16-507
               
               
               Cow position:chr23:13520142-13520637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 63

               
               
               Conread position:16-508
               
               
               Cow position:chr23:40526288-40525816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:504
               
               
               Alignm identity:359
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 98

               
               
               Conread position:17-318
               
               
               Cow position:chr23:7750876-7751171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:210
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):92, 51

               
               
               Conread position:17-350
               
               
               Cow position:chr23:39028486-39028797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):331, 87

               
               
               Conread position:17-395
               
               
               Cow position:chr23:34416254-34416623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:266
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):50, 134

               
               
               Conread position:17-449
               
               
               Cow position:chr23:6158521-6158081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:302
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):274, 91

               
               
               Conread position:17-485
               
               
               Cow position:chr23:11434582-11434109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 165

               
               
               Conread position:17-503
               
               
               Cow position:chr23:19002383-19001898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:498
               
               
               Alignm identity:371
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 143

               
               
               Conread position:17-508
               
               
               Cow position:chr23:18322732-18322254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:499
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 25

               
               
               Conread position:17-508
               
               
               Cow position:chr23:40781013-40781507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:502
               
               
               Alignm identity:355
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 75

               
               
               Conread position:18-449
               
               
               Cow position:chr23:2799254-2799696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:306
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):89, 69

               
               
               Conread position:18-449
               
               
               Cow position:chr23:38455499-38455061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 129

               
               
               Conread position:18-449
               
               
               Cow position:chr23:39778102-39778518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:291
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):91, 36

               
               
               Conread position:19-294
               
               
               Cow position:chr23:587083-587363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):94, 38

               
               
               Conread position:19-434
               
               
               Cow position:chr23:37065527-37065951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 45

               
               
               Conread position:19-447
               
               
               Cow position:chr23:7596641-7596239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:294
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):90, 35

               
               
               Conread position:19-448
               
               
               Cow position:chr23:41472302-41472737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:300
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):154, 35

               
               
               Conread position:20-369
               
               
               Cow position:chr23:1670606-1670938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:245
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):91, 34

               
               
               Conread position:21-434
               
               
               Cow position:chr23:6593013-6592606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:297
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):45, 133

               
               
               Conread position:22-448
               
               
               Cow position:chr23:4529202-4528763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 146

               
               
               Conread position:22-449
               
               
               Cow position:chr23:20744899-20744479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 150

               
               
               Conread position:27-448
               
               
               Cow position:chr23:3247286-3247703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 34

               
               
               Conread position:29-448
               
               
               Cow position:chr23:13599045-13599456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 55

               
               
               Conread position:30-506
               
               
               Cow position:chr23:31970822-31970358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:320
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):84, 113

               
               
               Conread position:33-448
               
               
               Cow position:chr23:4726503-4726907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 30

               
               
               Conread position:34-399
               
               
               Cow position:chr23:31601756-31601385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:255
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):75, 265

               
               
               Conread position:41-436
               
               
               Cow position:chr23:12050074-12050460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:267
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):53, 10

               
               
               Conread position:41-504
               
               
               Cow position:chr23:20171288-20171752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 32

               
               
               Conread position:45-434
               
               
               Cow position:chr23:3262783-3262396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 15

               
               
               Conread position:47-448
               
               
               Cow position:chr23:38208428-38208841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 35

               
               
               Conread position:50-491
               
               
               Cow position:chr23:17000420-17000862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:294
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):67, 15

               
               
               Conread position:54-338
               
               
               Cow position:chr23:33233183-33232904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:196
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):144, 59

               
               
               Conread position:57-508
               
               
               Cow position:chr23:22396716-22396262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):108, 34

               
               
               Conread position:60-508
               
               
               Cow position:chr23:29346030-29345583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 6

               
               
               Conread position:65-448
               
               
               Cow position:chr23:186904-187294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 169

               
               
               Conread position:65-457
               
               
               Cow position:chr23:5617312-5617696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):150, 48

               
               
               Conread position:66-300
               
               
               Cow position:chr23:36199027-36199260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:166
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):43, 159

               
               
               Conread position:66-347
               
               
               Cow position:chr23:27523287-27523025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:198
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):248, 29

               
               
               Conread position:66-360
               
               
               Cow position:chr23:32662311-32662607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):37, 19

               
               
               Conread position:66-434
               
               
               Cow position:chr23:13555694-13555338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 100

               
               
               Conread position:66-434
               
               
               Cow position:chr23:25358465-25358816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:267
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):43, 129

               
               
               Conread position:66-440
               
               
               Cow position:chr23:20781558-20781917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:261
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):43, 134

               
               
               Conread position:66-470
               
               
               Cow position:chr23:16237524-16237119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 13

               
               
               Conread position:67-449
               
               
               Cow position:chr23:11380523-11380135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:258
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):46, 231

               
               
               Conread position:67-449
               
               
               Cow position:chr23:26948923-26949313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 240

               
               
               Conread position:68-481
               
               
               Cow position:chr23:17092752-17092348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:290
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):47, 162

               
               
               Conread position:69-452
               
               
               Cow position:chr23:21452996-21452610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 154

               
               
               Conread position:70-302
               
               
               Cow position:chr23:21343508-21343278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:171
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):39, 24

               
               
               Conread position:70-434
               
               
               Cow position:chr23:20195180-20194823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 126

               
               
               Conread position:70-508
               
               
               Cow position:chr23:20388898-20388472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:298
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):118, 38

               
               
               Conread position:71-448
               
               
               Cow position:chr23:9711850-9711480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:262
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):38, 54

               
               
               Conread position:71-449
               
               
               Cow position:chr23:4968780-4968413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:263
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):40, 59

               
               
               Conread position:71-451
               
               
               Cow position:chr23:9652728-9652368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:270
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):38, 66

               
               
               Conread position:72-391
               
               
               Cow position:chr23:1803534-1803840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:229
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):92, 36

               
               
               Conread position:73-338
               
               
               Cow position:chr23:19538253-19537990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):36, 152

               
               
               Conread position:73-400
               
               
               Cow position:chr23:4608641-4608312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:228
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):36, 135

               
               
               Conread position:73-426
               
               
               Cow position:chr23:33711513-33711854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:245
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):275, 35

               
               
               Conread position:73-506
               
               
               Cow position:chr23:37224325-37223900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 151

               
               
               Conread position:73-508
               
               
               Cow position:chr23:16881416-16880976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:299
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):27, 68

               
               
               Conread position:74-307
               
               
               Cow position:chr23:808904-809145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):35, 89

               
               
               Conread position:74-430
               
               
               Cow position:chr23:4562630-4562983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 36

               
               
               Conread position:74-468
               
               
               Cow position:chr23:39775473-39775860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 35

               
               
               Conread position:77-347
               
               
               Cow position:chr23:38854989-38854722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:199
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):32, 50

               
               
               Conread position:77-390
               
               
               Cow position:chr23:20057122-20056810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 145

               
               
               Conread position:77-449
               
               
               Cow position:chr23:26632545-26632921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 147

               
               
               Conread position:77-449
               
               
               Cow position:chr23:27563964-27563589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 147

               
               
               Conread position:77-451
               
               
               Cow position:chr23:3967802-3967441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:260
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):268, 37

               
               
               Conread position:78-358
               
               
               Cow position:chr23:19979202-19978929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:214
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):21, 91

               
               
               Conread position:78-412
               
               
               Cow position:chr23:1647376-1647696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:233
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):241, 94

               
               
               Conread position:78-449
               
               
               Cow position:chr23:16583163-16582793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 92

               
               
               Conread position:78-506
               
               
               Cow position:chr23:15287388-15286959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 186

               
               
               Conread position:79-418
               
               
               Cow position:chr23:11994478-11994806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:252
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):91, 25

               
               
               Conread position:79-449
               
               
               Cow position:chr23:29034060-29034431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 147

               
               
               Conread position:81-449
               
               
               Cow position:chr23:26795155-26794801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:249
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):33, 109

               
               
               Conread position:82-508
               
               
               Cow position:chr23:38248650-38249079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:281
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):27, 86

               
               
               Conread position:83-470
               
               
               Cow position:chr23:3140615-3140987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:262
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):26, 143

               
               
               Conread position:84-447
               
               
               Cow position:chr23:18402534-18402175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 106

               
               
               Conread position:84-507
               
               
               Cow position:chr23:41348896-41348435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:308
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):27, 240

               
               
               Conread position:89-377
               
               
               Cow position:chr23:670377-670663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:205
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):25, 136

               
               
               Conread position:89-434
               
               
               Cow position:chr23:17404609-17404940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:228
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):9, 25

               
               
               Conread position:89-449
               
               
               Cow position:chr23:16700282-16699925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 66

               
               
               Conread position:89-508
               
               
               Cow position:chr23:13359577-13360001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:292
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):27, 72

               
               
               Conread position:90-434
               
               
               Cow position:chr23:1885418-1885071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:243
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):19, 219

               
               
               Conread position:90-508
               
               
               Cow position:chr23:8063311-8063722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:287
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):13, 37

               
               
               Conread position:95-434
               
               
               Cow position:chr23:15742863-15743192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 58

               
               
               Conread position:96-427
               
               
               Cow position:chr23:36076057-36075717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 27

               
               
               Conread position:96-432
               
               
               Cow position:chr23:11068985-11069311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:234
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):7, 122

               
               
               Conread position:96-447
               
               
               Cow position:chr23:6767655-6768020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:247
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):15, 125

               
               
               Conread position:97-427
               
               
               Cow position:chr23:25378421-25378741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 41

               
               
               Conread position:97-508
               
               
               Cow position:chr23:10416658-10416234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:291
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):12, 74

               
               
               Conread position:98-297
               
               
               Cow position:chr23:25189109-25189311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):119, 34

               
               
               Conread position:98-407
               
               
               Cow position:chr23:6367375-6367685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:224
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):76, 10

               
               
               Conread position:98-504
               
               
               Cow position:chr23:5603505-5603107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 67

               
               
               Conread position:99-472
               
               
               Cow position:chr23:30210577-30210209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:246
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):10, 43

               
               
               Conread position:100-448
               
               
               Cow position:chr23:24704048-24704406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 205

               
               
               Conread position:110-434
               
               
               Cow position:chr23:27544612-27544929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):238, 76

               
               
               Conread position:110-508
               
               
               Cow position:chr23:40891141-40891538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):239, 94

               
               
               Conread position:111-508
               
               
               Cow position:chr23:20996253-20996631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):292, 55

               
               
               Conread position:112-464
               
               
               Cow position:chr23:30307690-30308039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 17

               
               
               Conread position:112-472
               
               
               Cow position:chr23:21659719-21660078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 114

               
               
               Conread position:113-299
               
               
               Cow position:chr23:1489839-1490018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:113-316
               
               
               Cow position:chr23:12290065-12290270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:145
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):61, 34

               
               
               Conread position:113-448
               
               
               Cow position:chr23:2502066-2501738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):237, 56

               
               
               Conread position:115-449
               
               
               Cow position:chr23:5723328-5723651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:237
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):91, 190

               
               
               Conread position:117-368
               
               
               Cow position:chr23:3955208-3955454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:190
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):108, 27

               
               
               Conread position:117-448
               
               
               Cow position:chr23:40648941-40648616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:233
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):56, 106

               
               
               Conread position:117-504
               
               
               Cow position:chr23:28895181-28894784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:266
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):55, 97

               
               
               Conread position:118-448
               
               
               Cow position:chr23:18296595-18296922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 175

               
               
               Conread position:118-508
               
               
               Cow position:chr23:40789773-40790159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:280
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):198, 70

               
               
               Conread position:120-439
               
               
               Cow position:chr23:23409536-23409839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):228, 57

               
               
               Conread position:120-449
               
               
               Cow position:chr23:1742147-1742470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):228, 40

               
               
               Conread position:121-508
               
               
               Cow position:chr23:17485079-17484663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:298
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):45, 88

               
               
               Conread position:125-448
               
               
               Cow position:chr23:3191329-3191009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:226
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):105, 43

               
               
               Conread position:128-408
               
               
               Cow position:chr23:16631062-16631345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:196
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):42, 118

               
               
               Conread position:128-412
               
               
               Cow position:chr23:29786555-29786266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:203
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):46, 37

               
               
               Conread position:131-425
               
               
               Cow position:chr23:30999376-30999657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):43, 92

               
               
               Conread position:132-508
               
               
               Cow position:chr23:35177120-35177496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 90

               
               
               Conread position:133-508
               
               
               Cow position:chr23:33569944-33570325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:275
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):149, 9

               
               
               Conread position:136-440
               
               
               Cow position:chr23:19371265-19370968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:221
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):29, 86

               
               
               Conread position:145-448
               
               
               Cow position:chr23:32480222-32479902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:224
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:146-421
               
               
               Cow position:chr23:27290966-27290693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:208
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):25, 149

               
               
               Conread position:146-448
               
               
               Cow position:chr23:34356454-34356756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):78, 15

               
               
               Conread position:146-449
               
               
               Cow position:chr23:4104221-4104512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:213
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):202, 52

               
               
               Conread position:150-434
               
               
               Cow position:chr23:5426252-5426535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):199, 11

               
               
               Conread position:151-397
               
               
               Cow position:chr23:5515788-5516033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:171
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):78, 135

               
               
               Conread position:155-497
               
               
               Cow position:chr23:40651637-40651308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:238
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):67, 87

               
               
               Conread position:156-396
               
               
               Cow position:chr23:21974112-21974359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):11, 25

               
               
               Conread position:157-385
               
               
               Cow position:chr23:2761805-2762029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:165
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):16, 78

               
               
               Conread position:157-434
               
               
               Cow position:chr23:3282288-3282020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:194
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):192, 63

               
               
               Conread position:161-408
               
               
               Cow position:chr23:8837857-8837614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):68, 109

               
               
               Conread position:161-434
               
               
               Cow position:chr23:12334041-12334311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:199
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):122, 9

               
               
               Conread position:161-449
               
               
               Cow position:chr23:1767661-1767947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:212
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):90, 45

               
               
               Conread position:165-302
               
               
               Cow position:chr23:18107509-18107369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:106
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:165-449
               
               
               Cow position:chr23:33622317-33622033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):57, 85

               
               
               Conread position:165-507
               
               
               Cow position:chr23:38973677-38974028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:247
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):60, 140

               
               
               Conread position:166-390
               
               
               Cow position:chr23:23113865-23114089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):63, 135

               
               
               Conread position:166-447
               
               
               Cow position:chr23:12091523-12091242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:197
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):182, 125

               
               
               Conread position:170-408
               
               
               Cow position:chr23:6031720-6031951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):5, 51

               
               
               Conread position:171-451
               
               
               Cow position:chr23:13945870-13946156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:204
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):66, 147

               
               
               Conread position:172-399
               
               
               Cow position:chr23:40844495-40844716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):176, 68

               
               
               Conread position:172-415
               
               
               Cow position:chr23:4329839-4329592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):131, 0

               
               
               Conread position:172-449
               
               
               Cow position:chr23:4966662-4966935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):176, 68

               
               
               Conread position:172-449
               
               
               Cow position:chr23:18416206-18415939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:194
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):50, 120

               
               
               Conread position:172-457
               
               
               Cow position:chr23:35239188-35239474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):53, 32

               
               
               Conread position:173-449
               
               
               Cow position:chr23:38503271-38502991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):56, 31

               
               
               Conread position:173-508
               
               
               Cow position:chr23:35942058-35942386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):175, 84

               
               
               Conread position:174-448
               
               
               Cow position:chr23:7574788-7574509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):120, 82

               
               
               Conread position:176-449
               
               
               Cow position:chr23:39083299-39083567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):172, 73

               
               
               Conread position:176-508
               
               
               Cow position:chr23:19774620-19774942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):169, 44

               
               
               Conread position:177-426
               
               
               Cow position:chr23:349880-349630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:173
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):38, 124

               
               
               Conread position:181-506
               
               
               Cow position:chr23:41311190-41310869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:220
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):85, 39

               
               
               Conread position:191-447
               
               
               Cow position:chr23:30950821-30951070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):158, 28

               
               
               Conread position:192-449
               
               
               Cow position:chr23:4335942-4336183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):153, 15

               
               
               Conread position:192-452
               
               
               Cow position:chr23:3409042-3408785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:183
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):157, 27

               
               
               Conread position:192-502
               
               
               Cow position:chr23:26050898-26051208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):153, 33

               
               
               Conread position:192-507
               
               
               Cow position:chr23:24984308-24983998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:218
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):23, 58

               
               
               Conread position:196-449
               
               
               Cow position:chr23:5437132-5436887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):138, 95

               
               
               Conread position:197-415
               
               
               Cow position:chr23:5745044-5745264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:160
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):151, 40

               
               
               Conread position:198-447
               
               
               Cow position:chr23:4327827-4327586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:183
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):26, 103

               
               
               Conread position:199-449
               
               
               Cow position:chr23:5436776-5436526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:182
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):16, 69

               
               
               Conread position:200-397
               
               
               Cow position:chr23:28945194-28945005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):148, 25

               
               
               Conread position:200-507
               
               
               Cow position:chr23:18286068-18286376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:209
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):148, 19

               
               
               Conread position:203-448
               
               
               Cow position:chr23:36172395-36172639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:180
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):145, 37

               
               
               Conread position:203-449
               
               
               Cow position:chr23:9226147-9226395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:182
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):120, 99

               
               
               Conread position:210-449
               
               
               Cow position:chr23:1701051-1701288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):138, 11

               
               
               Conread position:211-449
               
               
               Cow position:chr23:16797929-16797690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):85, 220

               
               
               Conread position:213-441
               
               
               Cow position:chr23:39573373-39573145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:166
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):80, 12

               
               
               Conread position:214-401
               
               
               Cow position:chr23:3245032-3244846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:132
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):134, 82

               
               
               Conread position:224-397
               
               
               Cow position:chr23:19173459-19173300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:130
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):124, 29

               
               
               Conread position:224-413
               
               
               Cow position:chr23:39275783-39275972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):125, 57

               
               
               Conread position:224-449
               
               
               Cow position:chr23:1655788-1656011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):124, 78

               
               
               Conread position:224-449
               
               
               Cow position:chr23:22574023-22573792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:164
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):121, 70

               
               
               Conread position:225-449
               
               
               Cow position:chr23:1222345-1222120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):124, 74

               
               
               Conread position:227-425
               
               
               Cow position:chr23:15280602-15280404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:139
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):79, 64

               
               
               Conread position:227-449
               
               
               Cow position:chr23:39780653-39780871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:163
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):121, 11

               
               
               Conread position:231-446
               
               
               Cow position:chr23:769653-769428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):117, 72

               
               
               Conread position:236-451
               
               
               Cow position:chr23:29069537-29069322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):112, 58

               
               
               Conread position:237-434
               
               
               Cow position:chr23:4795079-4795271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:140
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):111, 57

               
               
               Conread position:242-508
               
               
               Cow position:chr23:18326718-18326979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):189, 81

               
               
               Conread position:244-395
               
               
               Cow position:chr23:3522664-3522812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):104, 58

               
               
               Conread position:244-447
               
               
               Cow position:chr23:3293605-3293809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):101, 186

               
               
               Conread position:244-448
               
               
               Cow position:chr23:20002168-20002370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):101, 58

               
               
               Conread position:248-473
               
               
               Cow position:chr23:6035353-6035577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):100, 48

               
               
               Conread position:248-508
               
               
               Cow position:chr23:283476-283208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):100, 14

               
               
               Conread position:249-449
               
               
               Cow position:chr23:306437-306639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):70, 47

               
               
               Conread position:249-449
               
               
               Cow position:chr23:307370-307572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):70, 47

               
               
               Conread position:250-459
               
               
               Cow position:chr23:23192231-23192030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):95, 72

               
               
               Conread position:250-508
               
               
               Cow position:chr23:21276103-21275844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):95, 72

               
               
               Conread position:250-508
               
               
               Cow position:chr23:35155292-35155549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:192
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):33, 52

               
               
               Conread position:252-432
               
               
               Cow position:chr23:11224779-11224954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):96, 29

               
               
               Conread position:253-508
               
               
               Cow position:chr23:11751208-11750959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):150, 53

               
               
               Conread position:254-449
               
               
               Cow position:chr23:5881595-5881401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):95, 41

               
               
               Conread position:257-449
               
               
               Cow position:chr23:349025-348831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):7, 34

               
               
               Conread position:258-448
               
               
               Cow position:chr23:35247293-35247483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):90, 40

               
               
               Conread position:260-508
               
               
               Cow position:chr23:26217492-26217730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:175
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):58, 42

               
               
               Conread position:270-506
               
               
               Cow position:chr23:28721298-28721065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):23, 75

               
               
               Conread position:272-485
               
               
               Cow position:chr23:14840572-14840360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):24, 52

               
               
               Conread position:272-505
               
               
               Cow position:chr23:13202420-13202180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):40, 30

               
               
               Conread position:275-449
               
               
               Cow position:chr23:3244522-3244352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):73, 21

               
               
               Conread position:286-446
               
               
               Cow position:chr23:360735-360575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):54, 10

               
               
               Conread position:287-506
               
               
               Cow position:chr23:1717597-1717376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:149
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):18, 38

               
               
               Conread position:307-485
               
               
               Cow position:chr23:6683722-6683901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:128
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):41, 16

               
               
               Conread position:308-449
               
               
               Cow position:chr23:26283698-26283839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:106
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):40, 94

               
               
               Conread position:309-442
               
               
               Cow position:chr23:1936668-1936533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:108
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:310-508
               
               
               Cow position:chr23:21847730-21847930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):6, 14

               
               
               Conread position:315-447
               
               
               Cow position:chr23:14569520-14569386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:101
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:317-508
               
               
               Cow position:chr23:38941606-38941796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):32, 11

               
               
               Conread position:322-508
               
               
               Cow position:chr23:22272491-22272302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:327-448
               
               
               Cow position:chr23:17039536-17039419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:99
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):72, 15

               
               
               Conread position:332-508
               
               
               Cow position:chr23:24411003-24411181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:339-508
               
               
               Cow position:chr23:30255867-30256041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:124
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:347-508
               
               
               Cow position:chr23:3955708-3955870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):17, 97

               
               
               Conread position:347-508
               
               
               Cow position:chr23:22826427-22826259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:348-508
               
               
               Cow position:chr23:30736135-30735975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):18, 10

               
               
               Conread position:351-508
               
               
               Cow position:chr23:18417110-18417270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):46, 128

               
               
               Conread position:398-508
               
               
               Cow position:chr23:40492803-40492914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:90
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:11-301
               
               
               Cow position:chr24:20862308-20862013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 169

               
               
               Conread position:12-473
               
               
               Cow position:chr24:30860282-30860749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 218

               
               
               Conread position:12-508
               
               
               Cow position:chr24:35568843-35569320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 102

               
               
               Conread position:15-294
               
               
               Cow position:chr24:39492954-39493232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):84, 39

               
               
               Conread position:15-367
               
               
               Cow position:chr24:3006442-3006796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:233
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):102, 251

               
               
               Conread position:16-287
               
               
               Cow position:chr24:39500620-39500348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):86, 34

               
               
               Conread position:16-290
               
               
               Cow position:chr24:3631175-3631442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:205
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):93, 134

               
               
               Conread position:16-302
               
               
               Cow position:chr24:21264848-21264563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:206
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):209, 78

               
               
               Conread position:16-304
               
               
               Cow position:chr24:20970134-20969853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:210
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):95, 155

               
               
               Conread position:16-308
               
               
               Cow position:chr24:27543818-27543527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 206

               
               
               Conread position:16-310
               
               
               Cow position:chr24:19658205-19658510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:16-312
               
               
               Cow position:chr24:35793837-35794139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:195
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):92, 291

               
               
               Conread position:16-361
               
               
               Cow position:chr24:43635088-43635439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:247
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):33, 146

               
               
               Conread position:16-363
               
               
               Cow position:chr24:13492484-13492835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):95, 278

               
               
               Conread position:16-364
               
               
               Cow position:chr24:29027710-29028044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:238
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:16-368
               
               
               Cow position:chr24:18405646-18405302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 93

               
               
               Conread position:16-369
               
               
               Cow position:chr24:15473016-15473367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:245
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):95, 49

               
               
               Conread position:16-372
               
               
               Cow position:chr24:27052833-27052482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):210, 35

               
               
               Conread position:16-373
               
               
               Cow position:chr24:6090975-6091334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:228
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):101, 275

               
               
               Conread position:16-373
               
               
               Cow position:chr24:6436450-6436806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:226
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):101, 248

               
               
               Conread position:16-373
               
               
               Cow position:chr24:37142296-37142655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:231
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):83, 289

               
               
               Conread position:16-398
               
               
               Cow position:chr24:20024265-20024651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 286

               
               
               Conread position:16-399
               
               
               Cow position:chr24:40035106-40034723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:242
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):94, 288

               
               
               Conread position:16-400
               
               
               Cow position:chr24:17407054-17407429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:261
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):150, 45

               
               
               Conread position:16-401
               
               
               Cow position:chr24:23034323-23034710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:251
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):93, 276

               
               
               Conread position:16-405
               
               
               Cow position:chr24:3152917-3152532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:261
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):95, 53

               
               
               Conread position:16-408
               
               
               Cow position:chr24:25320650-25321034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:275
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):93, 45

               
               
               Conread position:16-408
               
               
               Cow position:chr24:38814632-38815016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 45

               
               
               Conread position:16-421
               
               
               Cow position:chr24:2674990-2675377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 12

               
               
               Conread position:16-434
               
               
               Cow position:chr24:3430380-3430808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 156

               
               
               Conread position:16-434
               
               
               Cow position:chr24:5141592-5142017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 215

               
               
               Conread position:16-434
               
               
               Cow position:chr24:5754499-5754910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 137

               
               
               Conread position:16-434
               
               
               Cow position:chr24:11839838-11840262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 48

               
               
               Conread position:16-434
               
               
               Cow position:chr24:23616353-23616771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 176

               
               
               Conread position:16-434
               
               
               Cow position:chr24:28553888-28553489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 144

               
               
               Conread position:16-440
               
               
               Cow position:chr24:12851396-12851786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:296
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):85, 24

               
               
               Conread position:16-447
               
               
               Cow position:chr24:29673177-29673609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 282

               
               
               Conread position:16-447
               
               
               Cow position:chr24:31323946-31324372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 29

               
               
               Conread position:16-448
               
               
               Cow position:chr24:15057049-15057484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:302
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):48, 83

               
               
               Conread position:16-448
               
               
               Cow position:chr24:27267296-27267703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:302
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):88, 50

               
               
               Conread position:16-448
               
               
               Cow position:chr24:27290538-27290960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 45

               
               
               Conread position:16-448
               
               
               Cow position:chr24:29063985-29063570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 38

               
               
               Conread position:16-448
               
               
               Cow position:chr24:33098829-33098384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 63

               
               
               Conread position:16-449
               
               
               Cow position:chr24:18741911-18741482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 21

               
               
               Conread position:16-449
               
               
               Cow position:chr24:19466275-19465828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 108

               
               
               Conread position:16-449
               
               
               Cow position:chr24:27149065-27149473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):381, 49

               
               
               Conread position:16-449
               
               
               Cow position:chr24:30484276-30483851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 48

               
               
               Conread position:16-449
               
               
               Cow position:chr24:32124968-32124553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):115, 51

               
               
               Conread position:16-449
               
               
               Cow position:chr24:32205138-32204705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 208

               
               
               Conread position:16-449
               
               
               Cow position:chr24:40129770-40130219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 107

               
               
               Conread position:16-451
               
               
               Cow position:chr24:24250382-24250814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 166

               
               
               Conread position:16-452
               
               
               Cow position:chr24:814604-814177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 45

               
               
               Conread position:16-496
               
               
               Cow position:chr24:25677691-25678160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:492
               
               
               Alignm identity:365
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 11

               
               
               Conread position:16-506
               
               
               Cow position:chr24:33230324-33230820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:325
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):95, 63

               
               
               Conread position:16-507
               
               
               Cow position:chr24:7917711-7917213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 288

               
               
               Conread position:16-507
               
               
               Cow position:chr24:28721538-28722043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:518
               
               
               Alignm identity:352
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 116

               
               
               Conread position:16-508
               
               
               Cow position:chr24:17955777-17955298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:502
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):115, 46

               
               
               Conread position:16-508
               
               
               Cow position:chr24:27874260-27874740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 160

               
               
               Conread position:16-508
               
               
               Cow position:chr24:32158609-32158127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:495
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):333, 63

               
               
               Conread position:17-308
               
               
               Cow position:chr24:6341828-6342134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:218
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:17-310
               
               
               Cow position:chr24:33985356-33985059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:185
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):157, 0

               
               
               Conread position:17-312
               
               
               Cow position:chr24:28332619-28332316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):62, 98

               
               
               Conread position:17-333
               
               
               Cow position:chr24:43733629-43733946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 48

               
               
               Conread position:17-367
               
               
               Cow position:chr24:3214416-3214762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:226
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):100, 28

               
               
               Conread position:17-434
               
               
               Cow position:chr24:32370252-32369840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 155

               
               
               Conread position:17-449
               
               
               Cow position:chr24:18485341-18484907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 179

               
               
               Conread position:17-449
               
               
               Cow position:chr24:44987715-44987285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 131

               
               
               Conread position:17-461
               
               
               Cow position:chr24:40091909-40091480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 33

               
               
               Conread position:17-508
               
               
               Cow position:chr24:32823136-32822628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:521
               
               
               Alignm identity:367
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 23

               
               
               Conread position:18-286
               
               
               Cow position:chr24:38374948-38375214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:196
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):93, 48

               
               
               Conread position:18-290
               
               
               Cow position:chr24:38347339-38347618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:18-323
               
               
               Cow position:chr24:6161185-6160883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 62

               
               
               Conread position:18-356
               
               
               Cow position:chr24:36555168-36554837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):330, 173

               
               
               Conread position:18-404
               
               
               Cow position:chr24:32054331-32054706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 157

               
               
               Conread position:18-449
               
               
               Cow position:chr24:33944053-33944491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 149

               
               
               Conread position:18-471
               
               
               Cow position:chr24:6149690-6150136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:300
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):91, 101

               
               
               Conread position:19-508
               
               
               Cow position:chr24:27809840-27810316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:500
               
               
               Alignm identity:321
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):60, 286

               
               
               Conread position:20-434
               
               
               Cow position:chr24:28690356-28690759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 141

               
               
               Conread position:21-300
               
               
               Cow position:chr24:27720086-27719812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 33

               
               
               Conread position:21-443
               
               
               Cow position:chr24:29679649-29679229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 238

               
               
               Conread position:21-448
               
               
               Cow position:chr24:28319543-28319120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 206

               
               
               Conread position:22-397
               
               
               Cow position:chr24:11005326-11005711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:245
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:26-452
               
               
               Cow position:chr24:3493561-3493977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 93

               
               
               Conread position:27-390
               
               
               Cow position:chr24:34564797-34565149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):195, 132

               
               
               Conread position:27-449
               
               
               Cow position:chr24:17104895-17104480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 27

               
               
               Conread position:29-506
               
               
               Cow position:chr24:28335871-28335417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:489
               
               
               Alignm identity:334
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):66, 45

               
               
               Conread position:30-350
               
               
               Cow position:chr24:18734688-18734358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:222
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):69, 107

               
               
               Conread position:30-508
               
               
               Cow position:chr24:17980886-17981333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:313
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):85, 125

               
               
               Conread position:31-358
               
               
               Cow position:chr24:42007419-42007738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:229
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):76, 142

               
               
               Conread position:31-508
               
               
               Cow position:chr24:27054081-27054555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:493
               
               
               Alignm identity:351
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 77

               
               
               Conread position:32-415
               
               
               Cow position:chr24:29596137-29595753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):127, 78

               
               
               Conread position:39-449
               
               
               Cow position:chr24:18970807-18970418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 36

               
               
               Conread position:42-499
               
               
               Cow position:chr24:44041326-44040853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 114

               
               
               Conread position:47-506
               
               
               Cow position:chr24:28279331-28279769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 64

               
               
               Conread position:51-449
               
               
               Cow position:chr24:31159319-31159705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 105

               
               
               Conread position:54-449
               
               
               Cow position:chr24:15861904-15861504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 9

               
               
               Conread position:57-449
               
               
               Cow position:chr24:19535545-19535166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):291, 52

               
               
               Conread position:60-508
               
               
               Cow position:chr24:36404443-36403989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 19

               
               
               Conread position:65-422
               
               
               Cow position:chr24:43432509-43432853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 87

               
               
               Conread position:65-507
               
               
               Cow position:chr24:29388957-29389383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 29

               
               
               Conread position:66-440
               
               
               Cow position:chr24:35529632-35529988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:259
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):43, 18

               
               
               Conread position:67-461
               
               
               Cow position:chr24:25111911-25112299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 149

               
               
               Conread position:70-434
               
               
               Cow position:chr24:8886628-8886985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 95

               
               
               Conread position:70-448
               
               
               Cow position:chr24:31816297-31816667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:269
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):30, 137

               
               
               Conread position:70-505
               
               
               Cow position:chr24:6508051-6507625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 158

               
               
               Conread position:70-506
               
               
               Cow position:chr24:16994606-16995043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:305
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):35, 100

               
               
               Conread position:70-508
               
               
               Cow position:chr24:7079503-7079931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 28

               
               
               Conread position:70-508
               
               
               Cow position:chr24:34369294-34368859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):104, 154

               
               
               Conread position:71-294
               
               
               Cow position:chr24:6677215-6677449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):34, 74

               
               
               Conread position:71-294
               
               
               Cow position:chr24:27941295-27941072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:163
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):40, 71

               
               
               Conread position:71-308
               
               
               Cow position:chr24:44702691-44702928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):36, 117

               
               
               Conread position:71-370
               
               
               Cow position:chr24:37386627-37386335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:197
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):44, 87

               
               
               Conread position:71-449
               
               
               Cow position:chr24:6102546-6102917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:275
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):34, 56

               
               
               Conread position:71-449
               
               
               Cow position:chr24:34742462-34742843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 60

               
               
               Conread position:71-452
               
               
               Cow position:chr24:35150243-35150611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:261
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):36, 83

               
               
               Conread position:71-498
               
               
               Cow position:chr24:1438554-1438131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 74

               
               
               Conread position:71-506
               
               
               Cow position:chr24:32759057-32758616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 161

               
               
               Conread position:72-422
               
               
               Cow position:chr24:30229180-30229536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 124

               
               
               Conread position:72-508
               
               
               Cow position:chr24:42943408-42942971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:297
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):30, 98

               
               
               Conread position:73-274
               
               
               Cow position:chr24:2730855-2730652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:73-403
               
               
               Cow position:chr24:39905743-39905413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:240
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):153, 35

               
               
               Conread position:73-449
               
               
               Cow position:chr24:11118995-11119367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:263
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):31, 95

               
               
               Conread position:73-497
               
               
               Cow position:chr24:39742540-39742952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:277
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):38, 151

               
               
               Conread position:73-508
               
               
               Cow position:chr24:35073807-35074249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 220

               
               
               Conread position:74-441
               
               
               Cow position:chr24:20942893-20943243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:254
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):121, 35

               
               
               Conread position:75-425
               
               
               Cow position:chr24:19505-19128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:264
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):11, 215

               
               
               Conread position:75-470
               
               
               Cow position:chr24:14746354-14746758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:275
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):125, 111

               
               
               Conread position:77-383
               
               
               Cow position:chr24:39955327-39955027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:221
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):32, 148

               
               
               Conread position:77-403
               
               
               Cow position:chr24:23685342-23685023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:236
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):32, 136

               
               
               Conread position:77-438
               
               
               Cow position:chr24:25229338-25228985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:253
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):33, 149

               
               
               Conread position:77-508
               
               
               Cow position:chr24:39350489-39350077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 72

               
               
               Conread position:79-297
               
               
               Cow position:chr24:25424784-25424997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):30, 111

               
               
               Conread position:79-367
               
               
               Cow position:chr24:35795019-35794728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 146

               
               
               Conread position:79-397
               
               
               Cow position:chr24:7913719-7914043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:230
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):30, 227

               
               
               Conread position:79-434
               
               
               Cow position:chr24:40849885-40850226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:247
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):146, 31

               
               
               Conread position:79-470
               
               
               Cow position:chr24:39681576-39681962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 142

               
               
               Conread position:79-507
               
               
               Cow position:chr24:27633134-27633546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 130

               
               
               Conread position:79-508
               
               
               Cow position:chr24:27748375-27748787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):265, 31

               
               
               Conread position:79-508
               
               
               Cow position:chr24:35675264-35675698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:295
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):35, 131

               
               
               Conread position:80-433
               
               
               Cow position:chr24:18243743-18243393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 66

               
               
               Conread position:80-504
               
               
               Cow position:chr24:6061669-6061238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:293
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):163, 24

               
               
               Conread position:81-346
               
               
               Cow position:chr24:27967803-27968069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:196
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):30, 93

               
               
               Conread position:82-296
               
               
               Cow position:chr24:18324339-18324561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:159
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:82-428
               
               
               Cow position:chr24:19769222-19769558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 67

               
               
               Conread position:84-451
               
               
               Cow position:chr24:18390562-18390209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 216

               
               
               Conread position:87-508
               
               
               Cow position:chr24:27608368-27607944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 5

               
               
               Conread position:89-508
               
               
               Cow position:chr24:24755186-24755596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):142, 15

               
               
               Conread position:90-338
               
               
               Cow position:chr24:5151967-5152213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:180
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):17, 25

               
               
               Conread position:91-451
               
               
               Cow position:chr24:6450248-6450582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:253
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):20, 60

               
               
               Conread position:94-449
               
               
               Cow position:chr24:27039775-27040137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:254
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):16, 134

               
               
               Conread position:96-338
               
               
               Cow position:chr24:21860482-21860245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:174
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):9, 97

               
               
               Conread position:96-396
               
               
               Cow position:chr24:23442843-23442545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):13, 60

               
               
               Conread position:96-429
               
               
               Cow position:chr24:45004692-45005018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:224
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):13, 78

               
               
               Conread position:96-445
               
               
               Cow position:chr24:33724114-33723759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 132

               
               
               Conread position:96-449
               
               
               Cow position:chr24:41068010-41068350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:246
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):50, 13

               
               
               Conread position:96-459
               
               
               Cow position:chr24:23824675-23824322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 12

               
               
               Conread position:96-508
               
               
               Cow position:chr24:2970869-2970459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 127

               
               
               Conread position:98-354
               
               
               Cow position:chr24:39258905-39259155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):9, 124

               
               
               Conread position:102-448
               
               
               Cow position:chr24:34410401-34410730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 69

               
               
               Conread position:108-290
               
               
               Cow position:chr24:30776916-30776732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:130
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:110-341
               
               
               Cow position:chr24:27207441-27207215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:175
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):185, 0

               
               
               Conread position:110-440
               
               
               Cow position:chr24:2096135-2095801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):192, 112

               
               
               Conread position:110-451
               
               
               Cow position:chr24:26732201-26732541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:241
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):77, 37

               
               
               Conread position:112-508
               
               
               Cow position:chr24:28349341-28349731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:275
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):237, 60

               
               
               Conread position:113-447
               
               
               Cow position:chr24:24457491-24457163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 159

               
               
               Conread position:114-508
               
               
               Cow position:chr24:42825740-42825348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:277
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):60, 110

               
               
               Conread position:116-486
               
               
               Cow position:chr24:14617416-14617786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):127, 50

               
               
               Conread position:118-441
               
               
               Cow position:chr24:33222178-33221860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:228
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):231, 54

               
               
               Conread position:120-343
               
               
               Cow position:chr24:18695385-18695601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:161
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:120-394
               
               
               Cow position:chr24:18343812-18344097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:192
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:124-423
               
               
               Cow position:chr24:32894177-32894455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:205
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):127, 44

               
               
               Conread position:127-446
               
               
               Cow position:chr24:28327312-28326994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:226
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):171, 57

               
               
               Conread position:132-379
               
               
               Cow position:chr24:21918442-21918209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:173
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):214, 45

               
               
               Conread position:135-386
               
               
               Cow position:chr24:13297935-13297688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:180
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):116, 85

               
               
               Conread position:135-449
               
               
               Cow position:chr24:16509751-16510067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):204, 31

               
               
               Conread position:136-456
               
               
               Cow position:chr24:12263924-12263617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:225
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):31, 79

               
               
               Conread position:141-499
               
               
               Cow position:chr24:15373194-15373546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 79

               
               
               Conread position:141-508
               
               
               Cow position:chr24:2143526-2143897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 191

               
               
               Conread position:144-449
               
               
               Cow position:chr24:34008793-34008483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:217
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):27, 158

               
               
               Conread position:146-430
               
               
               Cow position:chr24:10125656-10125945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:206
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):71, 15

               
               
               Conread position:146-434
               
               
               Cow position:chr24:19736543-19736259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:210
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):13, 64

               
               
               Conread position:148-448
               
               
               Cow position:chr24:18787127-18786835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):95, 16

               
               
               Conread position:149-439
               
               
               Cow position:chr24:32086122-32085851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):200, 36

               
               
               Conread position:151-294
               
               
               Cow position:chr24:885888-885750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:110
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:154-450
               
               
               Cow position:chr24:20801546-20801255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:202
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):194, 32

               
               
               Conread position:157-434
               
               
               Cow position:chr24:16089038-16089303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:201
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):171, 7

               
               
               Conread position:157-434
               
               
               Cow position:chr24:28990366-28990636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):32, 15

               
               
               Conread position:157-449
               
               
               Cow position:chr24:352804-352517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:202
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):191, 63

               
               
               Conread position:161-397
               
               
               Cow position:chr24:5633228-5632994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):187, 145

               
               
               Conread position:161-397
               
               
               Cow position:chr24:39143413-39143649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):68, 143

               
               
               Conread position:161-508
               
               
               Cow position:chr24:30897733-30897395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:236
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):188, 58

               
               
               Conread position:162-449
               
               
               Cow position:chr24:18017036-18017317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):166, 16

               
               
               Conread position:165-343
               
               
               Cow position:chr24:30226749-30226922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):58, 130

               
               
               Conread position:165-448
               
               
               Cow position:chr24:15347404-15347678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):57, 21

               
               
               Conread position:165-449
               
               
               Cow position:chr24:16645517-16645229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:202
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):56, 23

               
               
               Conread position:165-449
               
               
               Cow position:chr24:33465796-33465532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:211
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):183, 23

               
               
               Conread position:165-505
               
               
               Cow position:chr24:42877061-42876736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:248
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):182, 26

               
               
               Conread position:166-397
               
               
               Cow position:chr24:26554791-26554560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):61, 107

               
               
               Conread position:169-434
               
               
               Cow position:chr24:17833001-17832746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):229, 125

               
               
               Conread position:169-449
               
               
               Cow position:chr24:14171881-14171604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):175, 196

               
               
               Conread position:171-508
               
               
               Cow position:chr24:37945819-37945479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:228
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):54, 135

               
               
               Conread position:172-448
               
               
               Cow position:chr24:7476537-7476266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):176, 140

               
               
               Conread position:172-452
               
               
               Cow position:chr24:32070782-32071054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):84, 48

               
               
               Conread position:172-507
               
               
               Cow position:chr24:19800662-19801005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:234
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):176, 87

               
               
               Conread position:174-434
               
               
               Cow position:chr24:16895618-16895361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:194
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):174, 51

               
               
               Conread position:175-443
               
               
               Cow position:chr24:17752295-17752027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:189
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):8, 66

               
               
               Conread position:175-507
               
               
               Cow position:chr24:18999866-19000209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:239
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):48, 98

               
               
               Conread position:176-427
               
               
               Cow position:chr24:29586813-29587068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:180
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):49, 93

               
               
               Conread position:176-449
               
               
               Cow position:chr24:10299903-10300166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):221, 51

               
               
               Conread position:179-449
               
               
               Cow position:chr24:18357230-18356962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):170, 40

               
               
               Conread position:180-472
               
               
               Cow position:chr24:19611834-19612119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):36, 13

               
               
               Conread position:181-508
               
               
               Cow position:chr24:31258513-31258192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 126

               
               
               Conread position:192-449
               
               
               Cow position:chr24:35576699-35576450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):69, 113

               
               
               Conread position:196-358
               
               
               Cow position:chr24:27552735-27552892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):152, 100

               
               
               Conread position:196-505
               
               
               Cow position:chr24:26455679-26455986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 24

               
               
               Conread position:196-507
               
               
               Cow position:chr24:11201807-11201496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:222
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):26, 118

               
               
               Conread position:197-449
               
               
               Cow position:chr24:5683119-5683369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:179
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):151, 22

               
               
               Conread position:199-448
               
               
               Cow position:chr24:7777773-7777540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:179
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):200, 21

               
               
               Conread position:199-449
               
               
               Cow position:chr24:28289405-28289164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:177
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):149, 20

               
               
               Conread position:201-449
               
               
               Cow position:chr24:18314104-18313843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):5, 25

               
               
               Conread position:202-508
               
               
               Cow position:chr24:16055650-16055363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:220
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:203-344
               
               
               Cow position:chr24:28023633-28023769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:205-434
               
               
               Cow position:chr24:37395359-37395136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:165
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):143, 14

               
               
               Conread position:215-452
               
               
               Cow position:chr24:24662271-24662038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):130, 25

               
               
               Conread position:216-508
               
               
               Cow position:chr24:32194367-32194653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 89

               
               
               Conread position:223-507
               
               
               Cow position:chr24:2359310-2359019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:212
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):125, 68

               
               
               Conread position:224-424
               
               
               Cow position:chr24:36713620-36713819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):19, 56

               
               
               Conread position:224-448
               
               
               Cow position:chr24:16895264-16895050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):32, 76

               
               
               Conread position:227-446
               
               
               Cow position:chr24:29606173-29605946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:158
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):73, 220

               
               
               Conread position:228-417
               
               
               Cow position:chr24:40837648-40837830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):169, 73

               
               
               Conread position:237-449
               
               
               Cow position:chr24:39523567-39523359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):111, 62

               
               
               Conread position:243-419
               
               
               Cow position:chr24:18393639-18393464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):97, 70

               
               
               Conread position:249-504
               
               
               Cow position:chr24:38841517-38841270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):149, 47

               
               
               Conread position:251-449
               
               
               Cow position:chr24:18614893-18615090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):97, 47

               
               
               Conread position:251-451
               
               
               Cow position:chr24:27418207-27418012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:147
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):97, 55

               
               
               Conread position:251-456
               
               
               Cow position:chr24:27900622-27900824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:165
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):94, 53

               
               
               Conread position:253-447
               
               
               Cow position:chr24:41405793-41405982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):95, 43

               
               
               Conread position:254-425
               
               
               Cow position:chr24:21894945-21895115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):27, 50

               
               
               Conread position:254-507
               
               
               Cow position:chr24:10031484-10031740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):94, 37

               
               
               Conread position:255-448
               
               
               Cow position:chr24:34496016-34496211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):70, 44

               
               
               Conread position:257-448
               
               
               Cow position:chr24:28042872-28043064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):92, 55

               
               
               Conread position:257-481
               
               
               Cow position:chr24:12452682-12452905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:183
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 50

               
               
               Conread position:257-502
               
               
               Cow position:chr24:25164934-25165177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:186
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):92, 5

               
               
               Conread position:259-429
               
               
               Cow position:chr24:28600537-28600365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):86, 53

               
               
               Conread position:259-508
               
               
               Cow position:chr24:16399530-16399293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:190
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):152, 43

               
               
               Conread position:259-508
               
               
               Cow position:chr24:28045653-28045900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):90, 45

               
               
               Conread position:260-449
               
               
               Cow position:chr24:39911134-39910944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:135
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):88, 46

               
               
               Conread position:260-508
               
               
               Cow position:chr24:19754475-19754726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):11, 43

               
               
               Conread position:260-508
               
               
               Cow position:chr24:43832426-43832689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):51, 76

               
               
               Conread position:261-441
               
               
               Cow position:chr24:37823432-37823609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:129
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):88, 35

               
               
               Conread position:262-434
               
               
               Cow position:chr24:7046843-7046675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):86, 37

               
               
               Conread position:268-427
               
               
               Cow position:chr24:40389518-40389676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:120
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):51, 36

               
               
               Conread position:271-449
               
               
               Cow position:chr24:2992964-2992792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):126, 28

               
               
               Conread position:272-504
               
               
               Cow position:chr24:22888503-22888735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):11, 25

               
               
               Conread position:273-447
               
               
               Cow position:chr24:16118281-16118448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:129
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):76, 22

               
               
               Conread position:328-480
               
               
               Cow position:chr24:39474434-39474283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:114
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:329-508
               
               
               Cow position:chr24:38291830-38292003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:126
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:331-504
               
               
               Cow position:chr24:12136111-12136286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:331-508
               
               
               Cow position:chr24:6427675-6427851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):18, 154

               
               
               Conread position:347-505
               
               
               Cow position:chr24:28024266-28024430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:353-505
               
               
               Cow position:chr24:43604282-43604127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:113
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:362-508
               
               
               Cow position:chr24:6677648-6677802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:116
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:375-508
               
               
               Cow position:chr24:15909635-15909769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:102
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:1-450
               
               
               Cow position:chr25:3145511-3145956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):116, 148

               
               
               Conread position:5-313
               
               
               Cow position:chr25:6424912-6424611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:221
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):94, 41

               
               
               Conread position:8-507
               
               
               Cow position:chr25:33664224-33663721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:519
               
               
               Alignm identity:337
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):101, 166

               
               
               Conread position:15-347
               
               
               Cow position:chr25:27504495-27504159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:242
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):90, 30

               
               
               Conread position:15-370
               
               
               Cow position:chr25:25827140-25827503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 98

               
               
               Conread position:15-485
               
               
               Cow position:chr25:14570045-14570519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 100

               
               
               Conread position:16-266
               
               
               Cow position:chr25:18448521-18448771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):99, 49

               
               
               Conread position:16-284
               
               
               Cow position:chr25:27017312-27017038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:174
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:16-306
               
               
               Cow position:chr25:33839068-33839350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:209
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):99, 154

               
               
               Conread position:16-321
               
               
               Cow position:chr25:13333103-13333410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 63

               
               
               Conread position:16-340
               
               
               Cow position:chr25:12204150-12204477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 177

               
               
               Conread position:16-343
               
               
               Cow position:chr25:10137787-10138098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 45

               
               
               Conread position:16-346
               
               
               Cow position:chr25:5514689-5515021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 38

               
               
               Conread position:16-362
               
               
               Cow position:chr25:29383647-29383300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:222
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):101, 276

               
               
               Conread position:16-364
               
               
               Cow position:chr25:11054610-11054928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:241
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:16-367
               
               
               Cow position:chr25:15618381-15618734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:230
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):101, 295

               
               
               Conread position:16-379
               
               
               Cow position:chr25:9957354-9956997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 149

               
               
               Conread position:16-379
               
               
               Cow position:chr25:12239457-12239106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):226, 49

               
               
               Conread position:16-388
               
               
               Cow position:chr25:20394887-20395241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:229
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:16-395
               
               
               Cow position:chr25:6886288-6885914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:252
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):93, 47

               
               
               Conread position:16-397
               
               
               Cow position:chr25:18294635-18294255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:267
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):19, 157

               
               
               Conread position:16-397
               
               
               Cow position:chr25:33959579-33959193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 14

               
               
               Conread position:16-397
               
               
               Cow position:chr25:36392284-36391894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:250
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):101, 276

               
               
               Conread position:16-399
               
               
               Cow position:chr25:6464348-6463970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 17

               
               
               Conread position:16-427
               
               
               Cow position:chr25:9349577-9349194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 128

               
               
               Conread position:16-431
               
               
               Cow position:chr25:787952-788353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 49

               
               
               Conread position:16-434
               
               
               Cow position:chr25:6683381-6682965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 187

               
               
               Conread position:16-434
               
               
               Cow position:chr25:21191171-21191586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 5

               
               
               Conread position:16-447
               
               
               Cow position:chr25:1837923-1838351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 45

               
               
               Conread position:16-448
               
               
               Cow position:chr25:11956507-11956915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:293
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):84, 94

               
               
               Conread position:16-448
               
               
               Cow position:chr25:17658295-17658722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 87

               
               
               Conread position:16-448
               
               
               Cow position:chr25:30319769-30319342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 282

               
               
               Conread position:16-449
               
               
               Cow position:chr25:13569487-13569064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 174

               
               
               Conread position:16-449
               
               
               Cow position:chr25:18564175-18564598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 155

               
               
               Conread position:16-449
               
               
               Cow position:chr25:38981787-38982205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:293
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):52, 111

               
               
               Conread position:16-451
               
               
               Cow position:chr25:20069404-20069834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:302
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):158, 95

               
               
               Conread position:16-481
               
               
               Cow position:chr25:18160991-18161426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 47

               
               
               Conread position:16-487
               
               
               Cow position:chr25:2126149-2126611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:315
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):93, 111

               
               
               Conread position:16-506
               
               
               Cow position:chr25:17975687-17975212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:495
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 205

               
               
               Conread position:16-508
               
               
               Cow position:chr25:9055885-9056344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:496
               
               
               Alignm identity:325
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):268, 49

               
               
               Conread position:16-508
               
               
               Cow position:chr25:10643628-10643127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 36

               
               
               Conread position:16-508
               
               
               Cow position:chr25:11437122-11436635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:499
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 182

               
               
               Conread position:16-508
               
               
               Cow position:chr25:20076178-20076668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:500
               
               
               Alignm identity:373
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 21

               
               
               Conread position:16-508
               
               
               Cow position:chr25:20625249-20624767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:501
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 76

               
               
               Conread position:16-508
               
               
               Cow position:chr25:23410345-23410829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:499
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 45

               
               
               Conread position:16-508
               
               
               Cow position:chr25:26225359-26224847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:523
               
               
               Alignm identity:346
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):93, 152

               
               
               Conread position:16-508
               
               
               Cow position:chr25:26654587-26655081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:501
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 290

               
               
               Conread position:16-508
               
               
               Cow position:chr25:40957306-40956817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:496
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 127

               
               
               Conread position:17-337
               
               
               Cow position:chr25:26111963-26112264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):313, 81

               
               
               Conread position:17-373
               
               
               Cow position:chr25:36779177-36779536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:240
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):95, 132

               
               
               Conread position:17-433
               
               
               Cow position:chr25:27531587-27531175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:272
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):61, 170

               
               
               Conread position:17-449
               
               
               Cow position:chr25:11585192-11585630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 215

               
               
               Conread position:17-487
               
               
               Cow position:chr25:16064580-16065050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 28

               
               
               Conread position:17-507
               
               
               Cow position:chr25:25754314-25753837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:496
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 56

               
               
               Conread position:18-283
               
               
               Cow position:chr25:17354061-17354327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:186
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):61, 144

               
               
               Conread position:18-343
               
               
               Cow position:chr25:14225114-14224799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:229
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):30, 156

               
               
               Conread position:18-384
               
               
               Cow position:chr25:1735628-1735275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:262
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):93, 50

               
               
               Conread position:18-434
               
               
               Cow position:chr25:21245924-21245507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 280

               
               
               Conread position:18-506
               
               
               Cow position:chr25:12097525-12098024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:336
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):91, 47

               
               
               Conread position:20-449
               
               
               Cow position:chr25:16922108-16921684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 69

               
               
               Conread position:21-410
               
               
               Cow position:chr25:35347587-35347976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 206

               
               
               Conread position:21-448
               
               
               Cow position:chr25:25051699-25051266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 178

               
               
               Conread position:23-300
               
               
               Cow position:chr25:9961480-9961205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:205
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):86, 31

               
               
               Conread position:23-508
               
               
               Cow position:chr25:18721421-18720938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:504
               
               
               Alignm identity:332
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):45, 126

               
               
               Conread position:24-508
               
               
               Cow position:chr25:24136748-24136275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:491
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 198

               
               
               Conread position:26-452
               
               
               Cow position:chr25:7641763-7641335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 204

               
               
               Conread position:27-400
               
               
               Cow position:chr25:2046859-2046498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:251
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):77, 13

               
               
               Conread position:30-360
               
               
               Cow position:chr25:31733042-31732712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 178

               
               
               Conread position:30-411
               
               
               Cow position:chr25:12817067-12817439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:269
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):79, 73

               
               
               Conread position:32-308
               
               
               Cow position:chr25:10366055-10365779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:203
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):46, 8

               
               
               Conread position:33-508
               
               
               Cow position:chr25:8576388-8576863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 191

               
               
               Conread position:34-508
               
               
               Cow position:chr25:16319428-16318961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:488
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):140, 45

               
               
               Conread position:35-441
               
               
               Cow position:chr25:4548016-4547614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:272
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):67, 25

               
               
               Conread position:36-361
               
               
               Cow position:chr25:2136059-2136382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):169, 52

               
               
               Conread position:40-449
               
               
               Cow position:chr25:6474396-6473975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 191

               
               
               Conread position:40-449
               
               
               Cow position:chr25:36761810-36762217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 224

               
               
               Conread position:46-449
               
               
               Cow position:chr25:21895177-21894773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 52

               
               
               Conread position:52-422
               
               
               Cow position:chr25:22297298-22296941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:263
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):57, 12

               
               
               Conread position:59-449
               
               
               Cow position:chr25:28188226-28187833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 133

               
               
               Conread position:63-503
               
               
               Cow position:chr25:33691281-33691715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 162

               
               
               Conread position:65-506
               
               
               Cow position:chr25:18000785-18000363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 29

               
               
               Conread position:66-276
               
               
               Cow position:chr25:6003261-6003050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):43, 111

               
               
               Conread position:66-447
               
               
               Cow position:chr25:23917572-23917951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 220

               
               
               Conread position:66-449
               
               
               Cow position:chr25:14196585-14196973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 161

               
               
               Conread position:66-508
               
               
               Cow position:chr25:27535172-27534749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 28

               
               
               Conread position:67-311
               
               
               Cow position:chr25:35625440-35625207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:183
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):32, 42

               
               
               Conread position:67-384
               
               
               Cow position:chr25:9754344-9754050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:230
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):23, 35

               
               
               Conread position:70-397
               
               
               Cow position:chr25:12261160-12260830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:228
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):39, 57

               
               
               Conread position:70-399
               
               
               Cow position:chr25:18988113-18988451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 25

               
               
               Conread position:70-421
               
               
               Cow position:chr25:24452434-24452076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:262
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):37, 48

               
               
               Conread position:70-449
               
               
               Cow position:chr25:12840976-12840606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:273
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):160, 12

               
               
               Conread position:70-508
               
               
               Cow position:chr25:36081609-36082057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 12

               
               
               Conread position:71-399
               
               
               Cow position:chr25:12081580-12081261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:234
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):83, 38

               
               
               Conread position:71-427
               
               
               Cow position:chr25:33978466-33978130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:252
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):38, 84

               
               
               Conread position:71-449
               
               
               Cow position:chr25:20007875-20008245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 92

               
               
               Conread position:71-449
               
               
               Cow position:chr25:40321557-40321177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 153

               
               
               Conread position:71-505
               
               
               Cow position:chr25:37594149-37594571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 113

               
               
               Conread position:71-506
               
               
               Cow position:chr25:24406005-24405565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 155

               
               
               Conread position:71-508
               
               
               Cow position:chr25:11131320-11131750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):254, 37

               
               
               Conread position:72-399
               
               
               Cow position:chr25:17566323-17566649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:230
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):42, 106

               
               
               Conread position:73-505
               
               
               Cow position:chr25:8512354-8511925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 43

               
               
               Conread position:74-448
               
               
               Cow position:chr25:26700778-26701137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 75

               
               
               Conread position:74-505
               
               
               Cow position:chr25:5407488-5407900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 78

               
               
               Conread position:75-434
               
               
               Cow position:chr25:20785842-20785491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:248
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):26, 34

               
               
               Conread position:76-508
               
               
               Cow position:chr25:18265904-18266332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 27

               
               
               Conread position:77-312
               
               
               Cow position:chr25:12824273-12824040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:172
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):32, 93

               
               
               Conread position:77-312
               
               
               Cow position:chr25:13642575-13642335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):23, 225

               
               
               Conread position:77-346
               
               
               Cow position:chr25:8918537-8918269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):32, 151

               
               
               Conread position:77-369
               
               
               Cow position:chr25:35332914-35333189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:204
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):285, 27

               
               
               Conread position:77-399
               
               
               Cow position:chr25:18487415-18487730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:230
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):32, 43

               
               
               Conread position:77-405
               
               
               Cow position:chr25:35612560-35612245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:229
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):30, 90

               
               
               Conread position:78-305
               
               
               Cow position:chr25:16400507-16400292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):31, 6

               
               
               Conread position:78-342
               
               
               Cow position:chr25:16001779-16001522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 109

               
               
               Conread position:78-426
               
               
               Cow position:chr25:5847064-5846720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:246
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):36, 146

               
               
               Conread position:78-449
               
               
               Cow position:chr25:7581685-7581315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:265
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):33, 146

               
               
               Conread position:79-388
               
               
               Cow position:chr25:36535689-36535383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 30

               
               
               Conread position:79-508
               
               
               Cow position:chr25:14512859-14513295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 90

               
               
               Conread position:82-294
               
               
               Cow position:chr25:36026753-36026968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:160
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:82-395
               
               
               Cow position:chr25:2194693-2194988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:217
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):89, 141

               
               
               Conread position:82-422
               
               
               Cow position:chr25:38135493-38135835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 95

               
               
               Conread position:83-508
               
               
               Cow position:chr25:14467335-14466929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:290
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):87, 30

               
               
               Conread position:84-383
               
               
               Cow position:chr25:33260488-33260777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:214
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):25, 157

               
               
               Conread position:84-508
               
               
               Cow position:chr25:24669682-24669263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:293
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):21, 112

               
               
               Conread position:89-508
               
               
               Cow position:chr25:22575765-22575359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:286
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):83, 21

               
               
               Conread position:95-451
               
               
               Cow position:chr25:19478451-19478789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:240
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):142, 15

               
               
               Conread position:97-346
               
               
               Cow position:chr25:4002557-4002809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:178
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):12, 222

               
               
               Conread position:97-386
               
               
               Cow position:chr25:8560630-8560918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 40

               
               
               Conread position:97-408
               
               
               Cow position:chr25:21289102-21289416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:215
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):10, 201

               
               
               Conread position:98-427
               
               
               Cow position:chr25:38425131-38425447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:232
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):250, 10

               
               
               Conread position:98-440
               
               
               Cow position:chr25:19129617-19129956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:241
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):7, 20

               
               
               Conread position:98-449
               
               
               Cow position:chr25:1762873-1763199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:236
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):300, 10

               
               
               Conread position:99-449
               
               
               Cow position:chr25:61421-61762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 167

               
               
               Conread position:110-466
               
               
               Cow position:chr25:10218275-10217919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:247
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):25, 183

               
               
               Conread position:113-277
               
               
               Cow position:chr25:2595956-2596128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):9, 116

               
               
               Conread position:113-383
               
               
               Cow position:chr25:17365478-17365213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:194
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):130, 40

               
               
               Conread position:119-447
               
               
               Cow position:chr25:12319553-12319243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:223
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):224, 50

               
               
               Conread position:120-508
               
               
               Cow position:chr25:14720539-14720921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:267
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):57, 21

               
               
               Conread position:120-508
               
               
               Cow position:chr25:34768934-34768559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:272
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):217, 66

               
               
               Conread position:124-508
               
               
               Cow position:chr25:26090025-26089638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 96

               
               
               Conread position:126-363
               
               
               Cow position:chr25:26270142-26269912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):222, 116

               
               
               Conread position:128-435
               
               
               Cow position:chr25:16714480-16714172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:225
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):96, 60

               
               
               Conread position:132-474
               
               
               Cow position:chr25:13272367-13272703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:241
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):42, 91

               
               
               Conread position:133-445
               
               
               Cow position:chr25:27801089-27801388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:219
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):27, 54

               
               
               Conread position:133-446
               
               
               Cow position:chr25:8157711-8157402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:234
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):40, 71

               
               
               Conread position:134-449
               
               
               Cow position:chr25:20133515-20133203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:218
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):32, 89

               
               
               Conread position:140-360
               
               
               Cow position:chr25:21042193-21042408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):208, 29

               
               
               Conread position:140-508
               
               
               Cow position:chr25:12755685-12755302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:259
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):82, 21

               
               
               Conread position:141-310
               
               
               Cow position:chr25:3982851-3983017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):61, 47

               
               
               Conread position:146-297
               
               
               Cow position:chr25:35110313-35110163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:146-397
               
               
               Cow position:chr25:17342266-17342517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):83, 15

               
               
               Conread position:146-448
               
               
               Cow position:chr25:18905698-18905996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:217
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):202, 15

               
               
               Conread position:146-448
               
               
               Cow position:chr25:25861543-25861240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:204
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):153, 15

               
               
               Conread position:146-507
               
               
               Cow position:chr25:17704566-17704927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:258
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):204, 15

               
               
               Conread position:152-508
               
               
               Cow position:chr25:26457866-26457507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 105

               
               
               Conread position:156-449
               
               
               Cow position:chr25:13443582-13443298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:206
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):189, 32

               
               
               Conread position:160-422
               
               
               Cow position:chr25:15440954-15440692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):62, 139

               
               
               Conread position:161-336
               
               
               Cow position:chr25:33267550-33267723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:161-448
               
               
               Cow position:chr25:17144254-17144546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:212
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):167, 25

               
               
               Conread position:165-505
               
               
               Cow position:chr25:22241813-22242135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:242
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):57, 22

               
               
               Conread position:165-505
               
               
               Cow position:chr25:30462468-30462135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:232
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):57, 113

               
               
               Conread position:168-355
               
               
               Cow position:chr25:6121933-6121752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:137
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):57, 125

               
               
               Conread position:169-473
               
               
               Cow position:chr25:34379269-34378970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 32

               
               
               Conread position:171-447
               
               
               Cow position:chr25:8961611-8961880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:195
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):177, 48

               
               
               Conread position:172-432
               
               
               Cow position:chr25:9002513-9002764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):176, 114

               
               
               Conread position:172-449
               
               
               Cow position:chr25:26679066-26679338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:197
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):178, 48

               
               
               Conread position:172-507
               
               
               Cow position:chr25:21893176-21893522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:241
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):173, 32

               
               
               Conread position:173-507
               
               
               Cow position:chr25:26259652-26259323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):175, 123

               
               
               Conread position:175-447
               
               
               Cow position:chr25:7380999-7380729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):29, 86

               
               
               Conread position:176-508
               
               
               Cow position:chr25:31732492-31732144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:239
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):123, 26

               
               
               Conread position:180-397
               
               
               Cow position:chr25:5920784-5921003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:151
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):49, 122

               
               
               Conread position:180-408
               
               
               Cow position:chr25:20216679-20216904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:165
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):168, 111

               
               
               Conread position:180-508
               
               
               Cow position:chr25:36501392-36501070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:229
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):63, 123

               
               
               Conread position:192-434
               
               
               Cow position:chr25:6687808-6688042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):205, 19

               
               
               Conread position:192-449
               
               
               Cow position:chr25:22730691-22730940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):24, 51

               
               
               Conread position:192-449
               
               
               Cow position:chr25:30618924-30619175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):156, 27

               
               
               Conread position:196-448
               
               
               Cow position:chr25:22751147-22750896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:193
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 24

               
               
               Conread position:198-435
               
               
               Cow position:chr25:9519189-9519419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:178
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):18, 25

               
               
               Conread position:198-449
               
               
               Cow position:chr25:33686815-33686573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):150, 26

               
               
               Conread position:199-447
               
               
               Cow position:chr25:19364193-19363949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):150, 14

               
               
               Conread position:199-508
               
               
               Cow position:chr25:12510144-12509832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:211
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):150, 20

               
               
               Conread position:201-448
               
               
               Cow position:chr25:14157489-14157736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):109, 18

               
               
               Conread position:202-423
               
               
               Cow position:chr25:16560309-16560088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:159
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):41, 122

               
               
               Conread position:204-418
               
               
               Cow position:chr25:19317128-19317346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):21, 178

               
               
               Conread position:206-449
               
               
               Cow position:chr25:17119613-17119854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):18, 78

               
               
               Conread position:214-448
               
               
               Cow position:chr25:36872241-36872469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):131, 77

               
               
               Conread position:216-404
               
               
               Cow position:chr25:11679028-11679206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:136
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):132, 29

               
               
               Conread position:220-448
               
               
               Cow position:chr25:25716537-25716756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):23, 51

               
               
               Conread position:220-508
               
               
               Cow position:chr25:14075187-14075473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):31, 66

               
               
               Conread position:223-490
               
               
               Cow position:chr25:12252924-12252658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):125, 137

               
               
               Conread position:224-430
               
               
               Cow position:chr25:1824206-1824004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:158
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):124, 41

               
               
               Conread position:224-475
               
               
               Cow position:chr25:30816775-30817023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):124, 83

               
               
               Conread position:224-508
               
               
               Cow position:chr25:36555800-36555510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:205
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):124, 71

               
               
               Conread position:225-449
               
               
               Cow position:chr25:17474621-17474401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):123, 12

               
               
               Conread position:227-449
               
               
               Cow position:chr25:9843068-9843288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):122, 44

               
               
               Conread position:227-508
               
               
               Cow position:chr25:26240430-26240709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:195
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):113, 69

               
               
               Conread position:235-499
               
               
               Cow position:chr25:13562336-13562593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):105, 86

               
               
               Conread position:237-508
               
               
               Cow position:chr25:6928606-6928327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:189
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):111, 56

               
               
               Conread position:242-449
               
               
               Cow position:chr25:36120409-36120610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):20, 64

               
               
               Conread position:242-500
               
               
               Cow position:chr25:8080630-8080888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):107, 80

               
               
               Conread position:242-508
               
               
               Cow position:chr25:12932538-12932796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:199
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):55, 44

               
               
               Conread position:243-508
               
               
               Cow position:chr25:6177934-6178204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):41, 137

               
               
               Conread position:244-486
               
               
               Cow position:chr25:33205171-33204934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):105, 51

               
               
               Conread position:250-449
               
               
               Cow position:chr25:7799468-7799659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:140
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):99, 46

               
               
               Conread position:250-449
               
               
               Cow position:chr25:12305191-12305388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):98, 51

               
               
               Conread position:250-454
               
               
               Cow position:chr25:26051816-26052019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):98, 54

               
               
               Conread position:250-456
               
               
               Cow position:chr25:12806959-12807157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:155
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:251-494
               
               
               Cow position:chr25:20811455-20811219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:170
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):98, 65

               
               
               Conread position:252-447
               
               
               Cow position:chr25:23817931-23817731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):34, 65

               
               
               Conread position:254-422
               
               
               Cow position:chr25:7023085-7023253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:123
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):94, 39

               
               
               Conread position:257-447
               
               
               Cow position:chr25:23504969-23505162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:258-443
               
               
               Cow position:chr25:5920007-5920186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):93, 36

               
               
               Conread position:258-508
               
               
               Cow position:chr25:11823509-11823255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):93, 38

               
               
               Conread position:262-508
               
               
               Cow position:chr25:23248810-23248571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:169
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:277-434
               
               
               Cow position:chr25:18542007-18541849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):76, 35

               
               
               Conread position:281-434
               
               
               Cow position:chr25:4221661-4221506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:285-434
               
               
               Cow position:chr25:447318-447168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):64, 27

               
               
               Conread position:295-508
               
               
               Cow position:chr25:18448767-18448981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:169
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):11, 124

               
               
               Conread position:303-482
               
               
               Cow position:chr25:17911433-17911610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):92, 51

               
               
               Conread position:303-508
               
               
               Cow position:chr25:20428284-20428488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:151
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):13, 23

               
               
               Conread position:306-470
               
               
               Cow position:chr25:9615804-9615970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):42, 164

               
               
               Conread position:307-508
               
               
               Cow position:chr25:35109301-35109089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:157
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:309-472
               
               
               Cow position:chr25:26160935-26161103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:123
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):39, 141

               
               
               Conread position:310-452
               
               
               Cow position:chr25:18288797-18288654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:107
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):38, 50

               
               
               Conread position:310-508
               
               
               Cow position:chr25:10364364-10364165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):18, 110

               
               
               Conread position:312-448
               
               
               Cow position:chr25:13503406-13503545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:106
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:313-508
               
               
               Cow position:chr25:13321156-13321348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):36, 162

               
               
               Conread position:328-508
               
               
               Cow position:chr25:15024901-15025078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):21, 30

               
               
               Conread position:329-508
               
               
               Cow position:chr25:23998934-23998750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:335-508
               
               
               Cow position:chr25:17701997-17701822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):13, 51

               
               
               Conread position:359-505
               
               
               Cow position:chr25:26652204-26652351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:112
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:363-508
               
               
               Cow position:chr25:2135234-2135083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:120
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:12-378
               
               
               Cow position:chr26:19648625-19648978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 21

               
               
               Conread position:12-439
               
               
               Cow position:chr26:29353817-29353391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 215

               
               
               Conread position:15-397
               
               
               Cow position:chr26:23142399-23142026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:261
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):49, 30

               
               
               Conread position:16-284
               
               
               Cow position:chr26:6422346-6422072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:16-291
               
               
               Cow position:chr26:7961331-7961607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 162

               
               
               Conread position:16-297
               
               
               Cow position:chr26:31889790-31890075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:202
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):91, 49

               
               
               Conread position:16-300
               
               
               Cow position:chr26:18231068-18231351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:197
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):95, 17

               
               
               Conread position:16-301
               
               
               Cow position:chr26:8034556-8034851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):21, 31

               
               
               Conread position:16-313
               
               
               Cow position:chr26:30806813-30806508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:215
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):93, 291

               
               
               Conread position:16-342
               
               
               Cow position:chr26:23926279-23925963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 60

               
               
               Conread position:16-355
               
               
               Cow position:chr26:25737170-25737507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 279

               
               
               Conread position:16-369
               
               
               Cow position:chr26:2531475-2531132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:249
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):92, 59

               
               
               Conread position:16-372
               
               
               Cow position:chr26:17170237-17170595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:231
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):46, 38

               
               
               Conread position:16-373
               
               
               Cow position:chr26:387663-388019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:222
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):158, 92

               
               
               Conread position:16-397
               
               
               Cow position:chr26:31856402-31856787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 98

               
               
               Conread position:16-399
               
               
               Cow position:chr26:21539334-21539715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:241
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):93, 151

               
               
               Conread position:16-422
               
               
               Cow position:chr26:8700351-8699943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 211

               
               
               Conread position:16-422
               
               
               Cow position:chr26:32670795-32670392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 84

               
               
               Conread position:16-430
               
               
               Cow position:chr26:25393732-25394151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 14

               
               
               Conread position:16-434
               
               
               Cow position:chr26:13021451-13021029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 210

               
               
               Conread position:16-434
               
               
               Cow position:chr26:19459374-19459809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 38

               
               
               Conread position:16-434
               
               
               Cow position:chr26:32601050-32601466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 70

               
               
               Conread position:16-448
               
               
               Cow position:chr26:3706502-3706921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 44

               
               
               Conread position:16-449
               
               
               Cow position:chr26:8352658-8353100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 213

               
               
               Conread position:16-449
               
               
               Cow position:chr26:20291983-20291561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 118

               
               
               Conread position:16-449
               
               
               Cow position:chr26:21418754-21418326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 175

               
               
               Conread position:16-451
               
               
               Cow position:chr26:2994971-2994566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:295
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):95, 37

               
               
               Conread position:16-451
               
               
               Cow position:chr26:9604241-9604695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 202

               
               
               Conread position:16-451
               
               
               Cow position:chr26:27491803-27491368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 64

               
               
               Conread position:16-451
               
               
               Cow position:chr26:32776807-32776379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 124

               
               
               Conread position:16-503
               
               
               Cow position:chr26:3072263-3071779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:342
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):94, 41

               
               
               Conread position:16-503
               
               
               Cow position:chr26:8651884-8651426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:496
               
               
               Alignm identity:326
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):16, 100

               
               
               Conread position:16-505
               
               
               Cow position:chr26:9064041-9064520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:502
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 195

               
               
               Conread position:16-508
               
               
               Cow position:chr26:21859517-21860010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:505
               
               
               Alignm identity:353
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 213

               
               
               Conread position:16-508
               
               
               Cow position:chr26:34108469-34108951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:502
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 94

               
               
               Conread position:17-310
               
               
               Cow position:chr26:5685137-5685444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:213
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):47, 146

               
               
               Conread position:17-346
               
               
               Cow position:chr26:3182238-3181913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:236
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):92, 28

               
               
               Conread position:17-451
               
               
               Cow position:chr26:6475726-6475296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 39

               
               
               Conread position:18-301
               
               
               Cow position:chr26:9867427-9867132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):45, 169

               
               
               Conread position:18-361
               
               
               Cow position:chr26:18692130-18692463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:249
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):33, 28

               
               
               Conread position:18-470
               
               
               Cow position:chr26:33475374-33475844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:321
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):91, 176

               
               
               Conread position:18-507
               
               
               Cow position:chr26:33044785-33045273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:500
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 42

               
               
               Conread position:20-434
               
               
               Cow position:chr26:12155403-12155007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 7

               
               
               Conread position:21-449
               
               
               Cow position:chr26:6714579-6714171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 167

               
               
               Conread position:22-452
               
               
               Cow position:chr26:5246784-5246344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 43

               
               
               Conread position:27-350
               
               
               Cow position:chr26:6447897-6447566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 76

               
               
               Conread position:27-399
               
               
               Cow position:chr26:6188006-6188378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:257
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):82, 194

               
               
               Conread position:27-449
               
               
               Cow position:chr26:4363015-4363431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 150

               
               
               Conread position:27-452
               
               
               Cow position:chr26:12238333-12237895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 193

               
               
               Conread position:31-306
               
               
               Cow position:chr26:8277858-8277575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:207
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):83, 204

               
               
               Conread position:32-448
               
               
               Cow position:chr26:16549698-16550118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 29

               
               
               Conread position:35-372
               
               
               Cow position:chr26:32013348-32013686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 140

               
               
               Conread position:37-439
               
               
               Cow position:chr26:11134976-11134572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 97

               
               
               Conread position:41-449
               
               
               Cow position:chr26:23600073-23599669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:290
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):30, 143

               
               
               Conread position:47-449
               
               
               Cow position:chr26:33567311-33566913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 63

               
               
               Conread position:50-508
               
               
               Cow position:chr26:16604017-16604481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 25

               
               
               Conread position:54-469
               
               
               Cow position:chr26:32058390-32058800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:288
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):61, 51

               
               
               Conread position:55-440
               
               
               Cow position:chr26:20260327-20260703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:272
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):19, 91

               
               
               Conread position:58-308
               
               
               Cow position:chr26:32026619-32026374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:179
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):93, 46

               
               
               Conread position:60-508
               
               
               Cow position:chr26:32898127-32897672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 5

               
               
               Conread position:65-508
               
               
               Cow position:chr26:9666661-9666227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 107

               
               
               Conread position:66-447
               
               
               Cow position:chr26:9104532-9104152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:265
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):43, 96

               
               
               Conread position:66-508
               
               
               Cow position:chr26:23097429-23096985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 178

               
               
               Conread position:67-418
               
               
               Cow position:chr26:6793891-6794245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:258
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):42, 17

               
               
               Conread position:67-448
               
               
               Cow position:chr26:8810882-8811257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 115

               
               
               Conread position:67-508
               
               
               Cow position:chr26:2196840-2196402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 78

               
               
               Conread position:68-505
               
               
               Cow position:chr26:18718982-18719440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:310
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):11, 263

               
               
               Conread position:70-423
               
               
               Cow position:chr26:2610047-2609701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:235
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):9, 23

               
               
               Conread position:70-449
               
               
               Cow position:chr26:4854290-4854675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:262
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):43, 104

               
               
               Conread position:70-451
               
               
               Cow position:chr26:26294435-26294063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 69

               
               
               Conread position:71-314
               
               
               Cow position:chr26:19769331-19769088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:183
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):38, 155

               
               
               Conread position:71-434
               
               
               Cow position:chr26:34256041-34256419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:266
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):28, 318

               
               
               Conread position:71-436
               
               
               Cow position:chr26:7103283-7102927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:263
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):30, 156

               
               
               Conread position:71-448
               
               
               Cow position:chr26:613919-613543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 96

               
               
               Conread position:71-448
               
               
               Cow position:chr26:4748103-4747731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:248
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):36, 151

               
               
               Conread position:71-448
               
               
               Cow position:chr26:16921693-16922067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:270
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):39, 92

               
               
               Conread position:71-506
               
               
               Cow position:chr26:798544-798102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 50

               
               
               Conread position:71-508
               
               
               Cow position:chr26:14924253-14924671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:294
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):38, 53

               
               
               Conread position:71-508
               
               
               Cow position:chr26:33011905-33011473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):277, 33

               
               
               Conread position:72-400
               
               
               Cow position:chr26:33160742-33160421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):37, 97

               
               
               Conread position:73-369
               
               
               Cow position:chr26:8746079-8745772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:225
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):26, 154

               
               
               Conread position:73-405
               
               
               Cow position:chr26:21991872-21992189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:239
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):36, 14

               
               
               Conread position:74-504
               
               
               Cow position:chr26:35704142-35704577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:295
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):31, 152

               
               
               Conread position:76-364
               
               
               Cow position:chr26:10768141-10767867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:206
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):35, 70

               
               
               Conread position:77-491
               
               
               Cow position:chr26:17288966-17289367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 95

               
               
               Conread position:77-505
               
               
               Cow position:chr26:34314437-34314883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:302
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):28, 228

               
               
               Conread position:77-508
               
               
               Cow position:chr26:2770076-2769653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:287
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):25, 32

               
               
               Conread position:77-508
               
               
               Cow position:chr26:9632610-9632175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 147

               
               
               Conread position:78-350
               
               
               Cow position:chr26:9850332-9850066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:197
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):21, 66

               
               
               Conread position:78-350
               
               
               Cow position:chr26:9853842-9853576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:196
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):21, 66

               
               
               Conread position:78-507
               
               
               Cow position:chr26:35448819-35449262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:301
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):7, 95

               
               
               Conread position:79-334
               
               
               Cow position:chr26:21351450-21351704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:184
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):32, 79

               
               
               Conread position:80-362
               
               
               Cow position:chr26:31779237-31779525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):29, 126

               
               
               Conread position:81-506
               
               
               Cow position:chr26:12668964-12669385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 142

               
               
               Conread position:82-449
               
               
               Cow position:chr26:17057448-17057810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 113

               
               
               Conread position:84-297
               
               
               Cow position:chr26:7224850-7224650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):13, 73

               
               
               Conread position:87-447
               
               
               Cow position:chr26:19774533-19774170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 207

               
               
               Conread position:89-482
               
               
               Cow position:chr26:17204366-17203982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:266
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):22, 63

               
               
               Conread position:89-508
               
               
               Cow position:chr26:21242876-21243294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 103

               
               
               Conread position:90-382
               
               
               Cow position:chr26:1587377-1587648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:90-448
               
               
               Cow position:chr26:33744662-33745029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:249
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):19, 316

               
               
               Conread position:95-508
               
               
               Cow position:chr26:5306912-5307326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:289
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:95-508
               
               
               Cow position:chr26:15211593-15211999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 76

               
               
               Conread position:96-427
               
               
               Cow position:chr26:6006267-6005948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 128

               
               
               Conread position:96-451
               
               
               Cow position:chr26:30254855-30254501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:246
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):13, 90

               
               
               Conread position:96-508
               
               
               Cow position:chr26:21637258-21636844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 130

               
               
               Conread position:98-277
               
               
               Cow position:chr26:9102619-9102437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:98-279
               
               
               Cow position:chr26:5988936-5988763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:108-449
               
               
               Cow position:chr26:10764012-10764342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:233
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):64, 121

               
               
               Conread position:110-449
               
               
               Cow position:chr26:25526041-25526380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 111

               
               
               Conread position:110-508
               
               
               Cow position:chr26:2987276-2986883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:264
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):238, 96

               
               
               Conread position:116-403
               
               
               Cow position:chr26:20013280-20013561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):232, 58

               
               
               Conread position:121-506
               
               
               Cow position:chr26:19110708-19111099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 189

               
               
               Conread position:124-434
               
               
               Cow position:chr26:32672631-32672312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:223
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):50, 173

               
               
               Conread position:127-449
               
               
               Cow position:chr26:6252659-6252987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:222
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):45, 168

               
               
               Conread position:129-434
               
               
               Cow position:chr26:14175095-14175398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:212
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):141, 32

               
               
               Conread position:132-369
               
               
               Cow position:chr26:6723921-6724155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):87, 59

               
               
               Conread position:132-487
               
               
               Cow position:chr26:3019611-3019249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:253
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):33, 200

               
               
               Conread position:133-426
               
               
               Cow position:chr26:4167538-4167246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:203
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):83, 57

               
               
               Conread position:133-490
               
               
               Cow position:chr26:12580200-12579843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:245
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):82, 36

               
               
               Conread position:134-275
               
               
               Cow position:chr26:27761830-27761689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:108
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:134-461
               
               
               Cow position:chr26:31902980-31903309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:229
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):13, 161

               
               
               Conread position:134-507
               
               
               Cow position:chr26:32866069-32865703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):215, 77

               
               
               Conread position:140-407
               
               
               Cow position:chr26:16179384-16179651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):34, 164

               
               
               Conread position:140-432
               
               
               Cow position:chr26:30568831-30568550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:202
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):256, 21

               
               
               Conread position:140-451
               
               
               Cow position:chr26:22354238-22354547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):197, 159

               
               
               Conread position:140-469
               
               
               Cow position:chr26:30605538-30605216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:235
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):34, 83

               
               
               Conread position:146-499
               
               
               Cow position:chr26:23315602-23315946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:245
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):177, 15

               
               
               Conread position:147-481
               
               
               Cow position:chr26:10292429-10292762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:239
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):27, 62

               
               
               Conread position:155-457
               
               
               Cow position:chr26:10973951-10974268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:218
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):11, 55

               
               
               Conread position:157-508
               
               
               Cow position:chr26:22249640-22249282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 67

               
               
               Conread position:161-384
               
               
               Cow position:chr26:11270094-11270300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):190, 58

               
               
               Conread position:161-422
               
               
               Cow position:chr26:23583100-23582841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):132, 58

               
               
               Conread position:161-449
               
               
               Cow position:chr26:829658-829936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):188, 17

               
               
               Conread position:162-448
               
               
               Cow position:chr26:22152075-22152357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:213
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):60, 24

               
               
               Conread position:164-341
               
               
               Cow position:chr26:10608098-10608274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:128
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):116, 22

               
               
               Conread position:164-449
               
               
               Cow position:chr26:8642795-8643074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:208
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):64, 24

               
               
               Conread position:165-450
               
               
               Cow position:chr26:2739606-2739323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):174, 42

               
               
               Conread position:170-356
               
               
               Cow position:chr26:8820008-8819821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:131
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):86, 133

               
               
               Conread position:170-440
               
               
               Cow position:chr26:647865-647604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):224, 49

               
               
               Conread position:172-443
               
               
               Cow position:chr26:14578183-14578445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):44, 69

               
               
               Conread position:172-446
               
               
               Cow position:chr26:28251004-28251284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):47, 16

               
               
               Conread position:172-447
               
               
               Cow position:chr26:34060193-34060462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:198
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):176, 14

               
               
               Conread position:172-504
               
               
               Cow position:chr26:12519875-12520213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:236
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):84, 48

               
               
               Conread position:174-477
               
               
               Cow position:chr26:31633585-31633887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:218
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):42, 127

               
               
               Conread position:175-508
               
               
               Cow position:chr26:27585634-27585961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:224
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):68, 11

               
               
               Conread position:176-451
               
               
               Cow position:chr26:32834713-32834446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:203
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):226, 105

               
               
               Conread position:179-508
               
               
               Cow position:chr26:14905946-14905609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):169, 14

               
               
               Conread position:192-507
               
               
               Cow position:chr26:33074622-33074290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:227
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):22, 35

               
               
               Conread position:196-449
               
               
               Cow position:chr26:7315221-7314977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):200, 24

               
               
               Conread position:197-508
               
               
               Cow position:chr26:12893539-12893222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:238
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):151, 26

               
               
               Conread position:198-469
               
               
               Cow position:chr26:33253438-33253167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:203
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):17, 124

               
               
               Conread position:199-425
               
               
               Cow position:chr26:3554629-3554396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:162
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):27, 89

               
               
               Conread position:207-426
               
               
               Cow position:chr26:32832079-32832293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):190, 12

               
               
               Conread position:208-449
               
               
               Cow position:chr26:24240569-24240810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):147, 12

               
               
               Conread position:208-508
               
               
               Cow position:chr26:6470380-6470086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):133, 94

               
               
               Conread position:214-426
               
               
               Cow position:chr26:4807460-4807662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):134, 80

               
               
               Conread position:214-449
               
               
               Cow position:chr26:6864914-6865155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:215-397
               
               
               Cow position:chr26:6486755-6486573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):118, 87

               
               
               Conread position:219-443
               
               
               Cow position:chr26:18877054-18876837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):129, 75

               
               
               Conread position:222-432
               
               
               Cow position:chr26:11538440-11538645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:147
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):126, 5

               
               
               Conread position:224-443
               
               
               Cow position:chr26:13818332-13818548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):92, 47

               
               
               Conread position:224-449
               
               
               Cow position:chr26:32836149-32836370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):124, 70

               
               
               Conread position:227-447
               
               
               Cow position:chr26:678068-677851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):122, 35

               
               
               Conread position:227-448
               
               
               Cow position:chr26:7687329-7687115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):122, 66

               
               
               Conread position:227-508
               
               
               Cow position:chr26:6514753-6515040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:197
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):122, 77

               
               
               Conread position:228-422
               
               
               Cow position:chr26:32815880-32815687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:136
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):120, 79

               
               
               Conread position:237-499
               
               
               Cow position:chr26:34106320-34106573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:184
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):111, 57

               
               
               Conread position:242-473
               
               
               Cow position:chr26:17155397-17155175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:160
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):98, 64

               
               
               Conread position:242-508
               
               
               Cow position:chr26:1325695-1325949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):106, 20

               
               
               Conread position:244-508
               
               
               Cow position:chr26:6451107-6451374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):76, 57

               
               
               Conread position:248-506
               
               
               Cow position:chr26:7955786-7956035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:194
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):101, 11

               
               
               Conread position:249-476
               
               
               Cow position:chr26:19903312-19903537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:162
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):34, 30

               
               
               Conread position:250-397
               
               
               Cow position:chr26:22100849-22100705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:112
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):29, 57

               
               
               Conread position:250-508
               
               
               Cow position:chr26:14481619-14481359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):95, 43

               
               
               Conread position:254-473
               
               
               Cow position:chr26:11568033-11567819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:153
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):62, 48

               
               
               Conread position:257-449
               
               
               Cow position:chr26:33392333-33392525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):21, 37

               
               
               Conread position:258-508
               
               
               Cow position:chr26:4421559-4421315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:173
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):71, 36

               
               
               Conread position:259-504
               
               
               Cow position:chr26:7162473-7162226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):25, 39

               
               
               Conread position:260-420
               
               
               Cow position:chr26:22603095-22602936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:121
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):34, 48

               
               
               Conread position:260-443
               
               
               Cow position:chr26:23624101-23623920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):88, 21

               
               
               Conread position:265-465
               
               
               Cow position:chr26:34119090-34118888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):8, 32

               
               
               Conread position:268-508
               
               
               Cow position:chr26:9102164-9101923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):44, 162

               
               
               Conread position:270-499
               
               
               Cow position:chr26:16113236-16113006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:171
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):79, 27

               
               
               Conread position:275-449
               
               
               Cow position:chr26:25074677-25074848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):73, 19

               
               
               Conread position:286-448
               
               
               Cow position:chr26:178198-178364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:297-449
               
               
               Cow position:chr26:29664182-29664026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:306-452
               
               
               Cow position:chr26:10938958-10939101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:113
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):42, 121

               
               
               Conread position:312-449
               
               
               Cow position:chr26:16435664-16435525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:312-507
               
               
               Cow position:chr26:7224350-7224147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):36, 120

               
               
               Conread position:322-506
               
               
               Cow position:chr26:10137738-10137555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:139
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):26, 103

               
               
               Conread position:327-485
               
               
               Cow position:chr26:19768799-19768639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:119
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:328-449
               
               
               Cow position:chr26:7183990-7183866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:97
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:332-500
               
               
               Cow position:chr26:7387779-7387950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):17, 93

               
               
               Conread position:332-507
               
               
               Cow position:chr26:7961952-7962123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):17, 36

               
               
               Conread position:347-507
               
               
               Cow position:chr26:13018361-13018196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:127
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:348-507
               
               
               Cow position:chr26:28446612-28446775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:120
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:4-403
               
               
               Cow position:chr27:12429698-12429295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 280

               
               
               Conread position:7-451
               
               
               Cow position:chr27:22418484-22418926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 63

               
               
               Conread position:10-399
               
               
               Cow position:chr27:15033001-15032613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:253
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):107, 51

               
               
               Conread position:11-448
               
               
               Cow position:chr27:13411081-13411525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):169, 69

               
               
               Conread position:11-508
               
               
               Cow position:chr27:8430148-8430655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:520
               
               
               Alignm identity:355
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 203

               
               
               Conread position:12-508
               
               
               Cow position:chr27:27049642-27050121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:502
               
               
               Alignm identity:351
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):97, 34

               
               
               Conread position:15-391
               
               
               Cow position:chr27:28018609-28018239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:267
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):47, 61

               
               
               Conread position:16-308
               
               
               Cow position:chr27:30561190-30560895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 103

               
               
               Conread position:16-341
               
               
               Cow position:chr27:16580892-16580569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):168, 12

               
               
               Conread position:16-342
               
               
               Cow position:chr27:26595702-26595371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:232
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):121, 92

               
               
               Conread position:16-346
               
               
               Cow position:chr27:25791086-25790751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:228
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):47, 297

               
               
               Conread position:16-367
               
               
               Cow position:chr27:15100536-15100889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:230
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):101, 250

               
               
               Conread position:16-369
               
               
               Cow position:chr27:732837-732498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:249
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):66, 51

               
               
               Conread position:16-393
               
               
               Cow position:chr27:21350741-21351122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:262
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):93, 293

               
               
               Conread position:16-393
               
               
               Cow position:chr27:24999462-24999841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:261
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):93, 52

               
               
               Conread position:16-397
               
               
               Cow position:chr27:4769212-4769595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:249
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):101, 276

               
               
               Conread position:16-397
               
               
               Cow position:chr27:15871436-15871056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:264
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):93, 134

               
               
               Conread position:16-397
               
               
               Cow position:chr27:25380271-25379883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 183

               
               
               Conread position:16-399
               
               
               Cow position:chr27:28984667-28985048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:245
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):93, 218

               
               
               Conread position:16-403
               
               
               Cow position:chr27:9090527-9090902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):97, 189

               
               
               Conread position:16-423
               
               
               Cow position:chr27:12278004-12278380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:284
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):207, 45

               
               
               Conread position:16-426
               
               
               Cow position:chr27:26427854-26428267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 282

               
               
               Conread position:16-427
               
               
               Cow position:chr27:30868466-30868876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):158, 213

               
               
               Conread position:16-432
               
               
               Cow position:chr27:26919639-26920051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 73

               
               
               Conread position:16-432
               
               
               Cow position:chr27:29831414-29831838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):158, 176

               
               
               Conread position:16-434
               
               
               Cow position:chr27:4819436-4819856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:274
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):43, 82

               
               
               Conread position:16-438
               
               
               Cow position:chr27:26999152-26999569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:277
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):98, 5

               
               
               Conread position:16-447
               
               
               Cow position:chr27:16787106-16786675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 253

               
               
               Conread position:16-447
               
               
               Cow position:chr27:18558653-18558205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 41

               
               
               Conread position:16-448
               
               
               Cow position:chr27:536727-536306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 29

               
               
               Conread position:16-448
               
               
               Cow position:chr27:4385791-4386218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 159

               
               
               Conread position:16-448
               
               
               Cow position:chr27:8062088-8062506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):158, 45

               
               
               Conread position:16-448
               
               
               Cow position:chr27:12246920-12246497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 43

               
               
               Conread position:16-448
               
               
               Cow position:chr27:15925609-15925189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:295
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):16, 64

               
               
               Conread position:16-448
               
               
               Cow position:chr27:21977863-21978295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:299
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):98, 138

               
               
               Conread position:16-449
               
               
               Cow position:chr27:1768364-1768781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 38

               
               
               Conread position:16-449
               
               
               Cow position:chr27:19718190-19717757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):158, 49

               
               
               Conread position:16-449
               
               
               Cow position:chr27:22603436-22603028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:296
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:16-449
               
               
               Cow position:chr27:27019829-27020255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 45

               
               
               Conread position:16-451
               
               
               Cow position:chr27:10582637-10582215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:285
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):101, 162

               
               
               Conread position:16-452
               
               
               Cow position:chr27:24477674-24477256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:292
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):331, 88

               
               
               Conread position:16-455
               
               
               Cow position:chr27:1353869-1353419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 138

               
               
               Conread position:16-459
               
               
               Cow position:chr27:4664746-4664316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 183

               
               
               Conread position:16-499
               
               
               Cow position:chr27:23128728-23128239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 66

               
               
               Conread position:16-505
               
               
               Cow position:chr27:21393233-21393725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:502
               
               
               Alignm identity:355
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 18

               
               
               Conread position:16-506
               
               
               Cow position:chr27:6454487-6453994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:502
               
               
               Alignm identity:359
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 76

               
               
               Conread position:16-507
               
               
               Cow position:chr27:1636673-1637160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:338
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):85, 14

               
               
               Conread position:16-507
               
               
               Cow position:chr27:18544272-18543754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:523
               
               
               Alignm identity:355
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 174

               
               
               Conread position:16-508
               
               
               Cow position:chr27:22330386-22330893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:518
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 156

               
               
               Conread position:16-508
               
               
               Cow position:chr27:28189943-28190426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:504
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 211

               
               
               Conread position:17-303
               
               
               Cow position:chr27:30177295-30177590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):41, 204

               
               
               Conread position:17-346
               
               
               Cow position:chr27:16238169-16237856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:17-427
               
               
               Cow position:chr27:4829540-4829946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:280
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):92, 44

               
               
               Conread position:17-441
               
               
               Cow position:chr27:19589748-19589323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 231

               
               
               Conread position:17-449
               
               
               Cow position:chr27:27683841-27684270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:296
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):52, 216

               
               
               Conread position:17-472
               
               
               Cow position:chr27:21139098-21138650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 11

               
               
               Conread position:17-497
               
               
               Cow position:chr27:26300108-26299641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:490
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):100, 45

               
               
               Conread position:17-505
               
               
               Cow position:chr27:17397182-17397683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 51

               
               
               Conread position:17-508
               
               
               Cow position:chr27:10992640-10992139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 10

               
               
               Conread position:18-279
               
               
               Cow position:chr27:29309294-29309034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:177
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):93, 41

               
               
               Conread position:18-286
               
               
               Cow position:chr27:16620260-16619991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 43

               
               
               Conread position:18-294
               
               
               Cow position:chr27:23454878-23455160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:204
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):145, 57

               
               
               Conread position:18-389
               
               
               Cow position:chr27:12231636-12232010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:261
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):43, 23

               
               
               Conread position:18-434
               
               
               Cow position:chr27:11435060-11435462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 17

               
               
               Conread position:18-439
               
               
               Cow position:chr27:21668853-21669265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:280
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):91, 171

               
               
               Conread position:18-449
               
               
               Cow position:chr27:26412986-26413412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 43

               
               
               Conread position:18-508
               
               
               Cow position:chr27:15319723-15319250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:501
               
               
               Alignm identity:372
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 28

               
               
               Conread position:19-508
               
               
               Cow position:chr27:8961998-8962476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:501
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 130

               
               
               Conread position:21-507
               
               
               Cow position:chr27:31372711-31373206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:504
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 54

               
               
               Conread position:22-247
               
               
               Cow position:chr27:2643670-2643884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:158
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):81, 51

               
               
               Conread position:22-449
               
               
               Cow position:chr27:7412651-7412235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:292
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):87, 203

               
               
               Conread position:22-449
               
               
               Cow position:chr27:27064176-27064597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 32

               
               
               Conread position:23-450
               
               
               Cow position:chr27:28931523-28931960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 38

               
               
               Conread position:24-448
               
               
               Cow position:chr27:6550717-6550307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 164

               
               
               Conread position:26-434
               
               
               Cow position:chr27:18507896-18507507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:283
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):83, 174

               
               
               Conread position:27-400
               
               
               Cow position:chr27:22426567-22426940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:244
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):194, 266

               
               
               Conread position:30-508
               
               
               Cow position:chr27:22035113-22035606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:499
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 195

               
               
               Conread position:31-300
               
               
               Cow position:chr27:26091142-26091406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:176
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):80, 42

               
               
               Conread position:31-449
               
               
               Cow position:chr27:24331988-24331563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 166

               
               
               Conread position:32-455
               
               
               Cow position:chr27:28921641-28922056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 29

               
               
               Conread position:33-338
               
               
               Cow position:chr27:31147415-31147714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:210
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):7, 193

               
               
               Conread position:33-447
               
               
               Cow position:chr27:26508904-26509309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):154, 75

               
               
               Conread position:34-397
               
               
               Cow position:chr27:7851634-7851285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:242
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):45, 78

               
               
               Conread position:37-338
               
               
               Cow position:chr27:26398006-26398303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:208
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):74, 185

               
               
               Conread position:39-508
               
               
               Cow position:chr27:23930215-23929743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:491
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 57

               
               
               Conread position:40-448
               
               
               Cow position:chr27:8942436-8942846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:280
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):69, 26

               
               
               Conread position:46-440
               
               
               Cow position:chr27:30354103-30354493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 11

               
               
               Conread position:46-446
               
               
               Cow position:chr27:22723465-22723848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 15

               
               
               Conread position:46-449
               
               
               Cow position:chr27:28518529-28518138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 133

               
               
               Conread position:46-503
               
               
               Cow position:chr27:26161742-26161293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 46

               
               
               Conread position:46-508
               
               
               Cow position:chr27:26492456-26492911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:302
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):63, 171

               
               
               Conread position:48-506
               
               
               Cow position:chr27:16284715-16284256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 177

               
               
               Conread position:50-505
               
               
               Cow position:chr27:6541865-6541403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 105

               
               
               Conread position:54-412
               
               
               Cow position:chr27:6500301-6499940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:252
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):55, 244

               
               
               Conread position:54-425
               
               
               Cow position:chr27:11815523-11815881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:253
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):55, 179

               
               
               Conread position:54-506
               
               
               Cow position:chr27:26440822-26441262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 33

               
               
               Conread position:56-449
               
               
               Cow position:chr27:26807329-26807722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:253
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):53, 164

               
               
               Conread position:57-508
               
               
               Cow position:chr27:29038706-29039156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 133

               
               
               Conread position:65-449
               
               
               Cow position:chr27:23554098-23554484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):107, 43

               
               
               Conread position:66-447
               
               
               Cow position:chr27:4835382-4835763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:262
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):11, 160

               
               
               Conread position:66-447
               
               
               Cow position:chr27:7934939-7935313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:265
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):45, 108

               
               
               Conread position:67-316
               
               
               Cow position:chr27:6620369-6620118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:180
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):42, 139

               
               
               Conread position:67-448
               
               
               Cow position:chr27:2592764-2592385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 36

               
               
               Conread position:70-352
               
               
               Cow position:chr27:1183656-1183944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):39, 72

               
               
               Conread position:70-432
               
               
               Cow position:chr27:4390034-4390398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:244
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):44, 154

               
               
               Conread position:70-482
               
               
               Cow position:chr27:18593487-18593084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):100, 5

               
               
               Conread position:70-499
               
               
               Cow position:chr27:20369259-20368806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:291
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):39, 132

               
               
               Conread position:71-316
               
               
               Cow position:chr27:29019527-29019780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):28, 156

               
               
               Conread position:71-333
               
               
               Cow position:chr27:20120673-20120412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):116, 151

               
               
               Conread position:71-363
               
               
               Cow position:chr27:6523265-6522973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:219
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):38, 103

               
               
               Conread position:71-373
               
               
               Cow position:chr27:795001-794710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):29, 39

               
               
               Conread position:71-443
               
               
               Cow position:chr27:19661162-19660780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 112

               
               
               Conread position:71-448
               
               
               Cow position:chr27:10307076-10307454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:260
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):40, 228

               
               
               Conread position:71-449
               
               
               Cow position:chr27:27640773-27641168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 337

               
               
               Conread position:71-449
               
               
               Cow position:chr27:30765251-30764878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 103

               
               
               Conread position:71-508
               
               
               Cow position:chr27:19543690-19544136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 103

               
               
               Conread position:72-363
               
               
               Cow position:chr27:21569626-21569911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):37, 13

               
               
               Conread position:74-505
               
               
               Cow position:chr27:12596972-12596550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):267, 36

               
               
               Conread position:76-432
               
               
               Cow position:chr27:22454564-22454916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:250
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):6, 113

               
               
               Conread position:77-334
               
               
               Cow position:chr27:19637847-19637600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):102, 29

               
               
               Conread position:77-356
               
               
               Cow position:chr27:27259821-27259550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:199
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):32, 203

               
               
               Conread position:77-372
               
               
               Cow position:chr27:2682930-2683225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:205
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):40, 105

               
               
               Conread position:77-403
               
               
               Cow position:chr27:25471357-25471028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:231
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):21, 153

               
               
               Conread position:77-432
               
               
               Cow position:chr27:21452857-21453234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:261
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):32, 242

               
               
               Conread position:77-457
               
               
               Cow position:chr27:26239237-26238862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:254
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):32, 51

               
               
               Conread position:77-485
               
               
               Cow position:chr27:25998918-25998508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 166

               
               
               Conread position:77-505
               
               
               Cow position:chr27:20765750-20766166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 97

               
               
               Conread position:77-508
               
               
               Cow position:chr27:24342117-24341686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:296
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):30, 38

               
               
               Conread position:79-449
               
               
               Cow position:chr27:30359606-30359249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 52

               
               
               Conread position:81-290
               
               
               Cow position:chr27:11762530-11762735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):28, 144

               
               
               Conread position:84-461
               
               
               Cow position:chr27:19647738-19648112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):195, 25

               
               
               Conread position:89-434
               
               
               Cow position:chr27:19685513-19685856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 85

               
               
               Conread position:89-447
               
               
               Cow position:chr27:19546303-19546667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 68

               
               
               Conread position:89-455
               
               
               Cow position:chr27:27003080-27003422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:250
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):25, 77

               
               
               Conread position:89-508
               
               
               Cow position:chr27:20354781-20354365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:287
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):20, 74

               
               
               Conread position:94-449
               
               
               Cow position:chr27:16705442-16705093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 156

               
               
               Conread position:94-463
               
               
               Cow position:chr27:11416636-11416280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:253
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):149, 48

               
               
               Conread position:94-485
               
               
               Cow position:chr27:21182033-21181652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:263
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):13, 104

               
               
               Conread position:96-335
               
               
               Cow position:chr27:30843884-30844120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):13, 57

               
               
               Conread position:96-449
               
               
               Cow position:chr27:30915196-30914852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:242
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):13, 78

               
               
               Conread position:96-494
               
               
               Cow position:chr27:20036935-20037320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 74

               
               
               Conread position:96-507
               
               
               Cow position:chr27:28001624-28002037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 39

               
               
               Conread position:98-320
               
               
               Cow position:chr27:6037311-6037092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:171
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):153, 10

               
               
               Conread position:99-310
               
               
               Cow position:chr27:24357455-24357238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:152
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):75, 207

               
               
               Conread position:101-449
               
               
               Cow position:chr27:30988984-30988640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 12

               
               
               Conread position:102-312
               
               
               Cow position:chr27:27550563-27550764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:158
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:103-434
               
               
               Cow position:chr27:8263144-8263479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:232
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):44, 153

               
               
               Conread position:103-434
               
               
               Cow position:chr27:9169457-9169782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 201

               
               
               Conread position:104-507
               
               
               Cow position:chr27:4858463-4858853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 88

               
               
               Conread position:110-297
               
               
               Cow position:chr27:31499246-31499055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:139
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):105, 59

               
               
               Conread position:110-404
               
               
               Cow position:chr27:4066-3784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:211
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):64, 94

               
               
               Conread position:113-504
               
               
               Cow position:chr27:24224732-24225108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):211, 81

               
               
               Conread position:113-508
               
               
               Cow position:chr27:14937253-14937645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 59

               
               
               Conread position:115-502
               
               
               Cow position:chr27:6160155-6159777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:269
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):59, 31

               
               
               Conread position:117-508
               
               
               Cow position:chr27:15408872-15409260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):232, 102

               
               
               Conread position:119-297
               
               
               Cow position:chr27:18434301-18434478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):40, 128

               
               
               Conread position:120-346
               
               
               Cow position:chr27:22268673-22268448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):54, 109

               
               
               Conread position:121-434
               
               
               Cow position:chr27:15643343-15643032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:224
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):53, 179

               
               
               Conread position:125-508
               
               
               Cow position:chr27:4944365-4944741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:259
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):226, 47

               
               
               Conread position:126-449
               
               
               Cow position:chr27:30871897-30872214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:225
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):271, 136

               
               
               Conread position:127-432
               
               
               Cow position:chr27:19896918-19896619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):38, 94

               
               
               Conread position:127-434
               
               
               Cow position:chr27:23891100-23890795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:218
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):5, 51

               
               
               Conread position:128-424
               
               
               Cow position:chr27:27270377-27270675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):13, 134

               
               
               Conread position:133-432
               
               
               Cow position:chr27:4007090-4007397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:201
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):32, 173

               
               
               Conread position:133-449
               
               
               Cow position:chr27:11480474-11480794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:213
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):92, 287

               
               
               Conread position:136-508
               
               
               Cow position:chr27:14343315-14343670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:260
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):250, 23

               
               
               Conread position:140-449
               
               
               Cow position:chr27:28270998-28271308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:212
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):75, 156

               
               
               Conread position:140-508
               
               
               Cow position:chr27:12243987-12244342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:255
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):208, 40

               
               
               Conread position:146-451
               
               
               Cow position:chr27:427110-426810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):89, 15

               
               
               Conread position:150-415
               
               
               Cow position:chr27:12424788-12425040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:179
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):93, 40

               
               
               Conread position:157-398
               
               
               Cow position:chr27:20789248-20789485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:171
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):192, 15

               
               
               Conread position:160-434
               
               
               Cow position:chr27:7731120-7731400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:160-508
               
               
               Cow position:chr27:3306898-3306551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:250
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):75, 47

               
               
               Conread position:161-346
               
               
               Cow position:chr27:4011806-4011626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):61, 136

               
               
               Conread position:161-363
               
               
               Cow position:chr27:7537949-7538148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):66, 29

               
               
               Conread position:161-432
               
               
               Cow position:chr27:715630-715361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:191
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):238, 124

               
               
               Conread position:161-449
               
               
               Cow position:chr27:8168302-8168588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):71, 131

               
               
               Conread position:166-449
               
               
               Cow position:chr27:16965710-16965419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:208
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):53, 132

               
               
               Conread position:167-487
               
               
               Cow position:chr27:21681214-21681520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:228
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):16, 20

               
               
               Conread position:169-358
               
               
               Cow position:chr27:20570241-20570053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):43, 58

               
               
               Conread position:170-451
               
               
               Cow position:chr27:30389178-30389457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:193
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):170, 39

               
               
               Conread position:172-449
               
               
               Cow position:chr27:17331615-17331345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:193
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):173, 47

               
               
               Conread position:174-397
               
               
               Cow position:chr27:30672449-30672663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):61, 67

               
               
               Conread position:176-447
               
               
               Cow position:chr27:24371347-24371087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):175, 44

               
               
               Conread position:176-449
               
               
               Cow position:chr27:26226178-26226447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):75, 26

               
               
               Conread position:177-451
               
               
               Cow position:chr27:31148871-31148602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):168, 17

               
               
               Conread position:182-508
               
               
               Cow position:chr27:12191383-12191699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:234
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):166, 116

               
               
               Conread position:190-449
               
               
               Cow position:chr27:17994844-17995101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):137, 104

               
               
               Conread position:191-508
               
               
               Cow position:chr27:23736059-23735734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:221
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):34, 101

               
               
               Conread position:192-449
               
               
               Cow position:chr27:22559725-22559981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:190
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):23, 112

               
               
               Conread position:192-508
               
               
               Cow position:chr27:22386966-22386653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:221
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):206, 27

               
               
               Conread position:196-388
               
               
               Cow position:chr27:23511082-23510891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):149, 23

               
               
               Conread position:196-508
               
               
               Cow position:chr27:24509909-24509609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 28

               
               
               Conread position:197-397
               
               
               Cow position:chr27:20055878-20056073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):143, 97

               
               
               Conread position:197-449
               
               
               Cow position:chr27:16088907-16088647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:188
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):36, 108

               
               
               Conread position:208-508
               
               
               Cow position:chr27:19083633-19083933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):35, 19

               
               
               Conread position:210-449
               
               
               Cow position:chr27:6925167-6924927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):134, 15

               
               
               Conread position:214-404
               
               
               Cow position:chr27:20247732-20247917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:136
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):182, 88

               
               
               Conread position:215-415
               
               
               Cow position:chr27:15215307-15215106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):133, 126

               
               
               Conread position:220-502
               
               
               Cow position:chr27:783773-783496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:198
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):32, 83

               
               
               Conread position:223-449
               
               
               Cow position:chr27:6302393-6302625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):20, 175

               
               
               Conread position:224-420
               
               
               Cow position:chr27:4156067-4155867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:224-448
               
               
               Cow position:chr27:20514886-20514666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):124, 70

               
               
               Conread position:224-449
               
               
               Cow position:chr27:7974239-7974019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):161, 87

               
               
               Conread position:224-449
               
               
               Cow position:chr27:26111844-26112073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):56, 85

               
               
               Conread position:224-508
               
               
               Cow position:chr27:2354704-2354978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):110, 25

               
               
               Conread position:224-508
               
               
               Cow position:chr27:22225530-22225804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:209
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):124, 72

               
               
               Conread position:227-422
               
               
               Cow position:chr27:21976111-21975922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:145
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):121, 54

               
               
               Conread position:227-447
               
               
               Cow position:chr27:31017772-31017981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):170, 44

               
               
               Conread position:227-508
               
               
               Cow position:chr27:20748945-20749237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:204
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):67, 143

               
               
               Conread position:229-482
               
               
               Cow position:chr27:8273073-8272820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:183
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):44, 13

               
               
               Conread position:232-505
               
               
               Cow position:chr27:1536658-1536940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:208
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):13, 92

               
               
               Conread position:237-448
               
               
               Cow position:chr27:23860221-23860009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:158
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):13, 135

               
               
               Conread position:242-449
               
               
               Cow position:chr27:15865658-15865449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:242-508
               
               
               Cow position:chr27:11356491-11356747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):14, 83

               
               
               Conread position:243-470
               
               
               Cow position:chr27:6884067-6883855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):153, 13

               
               
               Conread position:244-506
               
               
               Cow position:chr27:2847898-2847640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):107, 52

               
               
               Conread position:247-449
               
               
               Cow position:chr27:5553513-5553312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:143
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):36, 53

               
               
               Conread position:248-447
               
               
               Cow position:chr27:213005-212800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:147
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:248-451
               
               
               Cow position:chr27:20812952-20812745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):21, 56

               
               
               Conread position:249-489
               
               
               Cow position:chr27:17646127-17646373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:183
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):99, 50

               
               
               Conread position:250-449
               
               
               Cow position:chr27:17918276-17918471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):98, 44

               
               
               Conread position:251-449
               
               
               Cow position:chr27:29593590-29593786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):97, 51

               
               
               Conread position:253-507
               
               
               Cow position:chr27:14269306-14269564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:182
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):95, 16

               
               
               Conread position:254-449
               
               
               Cow position:chr27:14303769-14303580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):94, 40

               
               
               Conread position:254-451
               
               
               Cow position:chr27:10653721-10653525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:140
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):94, 39

               
               
               Conread position:255-432
               
               
               Cow position:chr27:18922796-18922972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):95, 48

               
               
               Conread position:261-447
               
               
               Cow position:chr27:22423538-22423360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:140
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):87, 35

               
               
               Conread position:271-448
               
               
               Cow position:chr27:11561794-11561619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):77, 31

               
               
               Conread position:274-447
               
               
               Cow position:chr27:19509030-19508857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):75, 26

               
               
               Conread position:277-452
               
               
               Cow position:chr27:28478594-28478419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):71, 19

               
               
               Conread position:284-414
               
               
               Cow position:chr27:20264021-20263890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:103
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):65, 17

               
               
               Conread position:286-478
               
               
               Cow position:chr27:13977539-13977732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:148
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):42, 16

               
               
               Conread position:295-508
               
               
               Cow position:chr27:7663019-7662809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):51, 184

               
               
               Conread position:307-449
               
               
               Cow position:chr27:30489424-30489568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:111
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:308-451
               
               
               Cow position:chr27:29319396-29319252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):40, 130

               
               
               Conread position:308-508
               
               
               Cow position:chr27:13958359-13958559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):11, 16

               
               
               Conread position:308-508
               
               
               Cow position:chr27:22245611-22245406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:157
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):40, 88

               
               
               Conread position:309-447
               
               
               Cow position:chr27:18435148-18435289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:326-508
               
               
               Cow position:chr27:25880068-25879886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):23, 41

               
               
               Conread position:327-451
               
               
               Cow position:chr27:19452968-19452843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:98
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):21, 120

               
               
               Conread position:334-508
               
               
               Cow position:chr27:11746547-11746372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:129
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):15, 89

               
               
               Conread position:342-508
               
               
               Cow position:chr27:19741457-19741626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:355-473
               
               
               Cow position:chr27:14226761-14226641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:101
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:357-504
               
               
               Cow position:chr27:17875207-17875354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:108
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):74, 57

               
               
               Conread position:11-361
               
               
               Cow position:chr28:30977969-30978302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:244
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):100, 17

               
               
               Conread position:11-369
               
               
               Cow position:chr28:15590679-15591014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:252
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):160, 62

               
               
               Conread position:11-423
               
               
               Cow position:chr28:20265059-20265494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:287
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:11-447
               
               
               Cow position:chr28:25727064-25727489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):299, 97

               
               
               Conread position:11-508
               
               
               Cow position:chr28:25826180-25825688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:502
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):240, 64

               
               
               Conread position:12-448
               
               
               Cow position:chr28:30293903-30293471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:289
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):97, 49

               
               
               Conread position:12-456
               
               
               Cow position:chr28:34878286-34877857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:297
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):97, 49

               
               
               Conread position:12-473
               
               
               Cow position:chr28:32300682-32300219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 220

               
               
               Conread position:12-508
               
               
               Cow position:chr28:5475340-5474855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:504
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):102, 42

               
               
               Conread position:15-320
               
               
               Cow position:chr28:2124126-2124420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:215
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):211, 92

               
               
               Conread position:16-297
               
               
               Cow position:chr28:11451787-11451494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:211
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):59, 278

               
               
               Conread position:16-300
               
               
               Cow position:chr28:19295674-19295387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 57

               
               
               Conread position:16-307
               
               
               Cow position:chr28:12049025-12048723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:217
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):48, 101

               
               
               Conread position:16-312
               
               
               Cow position:chr28:23685981-23686282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):101, 250

               
               
               Conread position:16-336
               
               
               Cow position:chr28:7590495-7590177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:228
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):58, 26

               
               
               Conread position:16-346
               
               
               Cow position:chr28:4022070-4022402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 76

               
               
               Conread position:16-346
               
               
               Cow position:chr28:15375134-15374809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:241
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):93, 45

               
               
               Conread position:16-357
               
               
               Cow position:chr28:5553238-5552912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:229
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):332, 107

               
               
               Conread position:16-362
               
               
               Cow position:chr28:25556275-25555935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:221
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):101, 128

               
               
               Conread position:16-367
               
               
               Cow position:chr28:25683266-25682913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:230
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):101, 276

               
               
               Conread position:16-370
               
               
               Cow position:chr28:9851324-9851652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:245
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):89, 51

               
               
               Conread position:16-373
               
               
               Cow position:chr28:1957306-1957665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:229
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):101, 276

               
               
               Conread position:16-373
               
               
               Cow position:chr28:5335571-5335213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:230
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):101, 35

               
               
               Conread position:16-373
               
               
               Cow position:chr28:16598090-16598451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:234
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):92, 38

               
               
               Conread position:16-373
               
               
               Cow position:chr28:20966719-20966360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:234
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):101, 289

               
               
               Conread position:16-379
               
               
               Cow position:chr28:16401585-16401947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:246
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):7, 46

               
               
               Conread position:16-384
               
               
               Cow position:chr28:18462936-18462559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:268
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):42, 11

               
               
               Conread position:16-384
               
               
               Cow position:chr28:18717437-18717077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 63

               
               
               Conread position:16-393
               
               
               Cow position:chr28:12942080-12942440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:263
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):227, 28

               
               
               Conread position:16-397
               
               
               Cow position:chr28:12946633-12947015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 17

               
               
               Conread position:16-399
               
               
               Cow position:chr28:5361327-5360944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:255
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):101, 222

               
               
               Conread position:16-399
               
               
               Cow position:chr28:7549374-7548989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 201

               
               
               Conread position:16-399
               
               
               Cow position:chr28:26727724-26727350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:249
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):151, 100

               
               
               Conread position:16-402
               
               
               Cow position:chr28:18790700-18791090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 38

               
               
               Conread position:16-404
               
               
               Cow position:chr28:10642328-10641960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 38

               
               
               Conread position:16-414
               
               
               Cow position:chr28:25806285-25806658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:280
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):332, 43

               
               
               Conread position:16-415
               
               
               Cow position:chr28:16686722-16687111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 54

               
               
               Conread position:16-422
               
               
               Cow position:chr28:4536159-4536551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:281
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):87, 14

               
               
               Conread position:16-425
               
               
               Cow position:chr28:21380569-21380974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):154, 73

               
               
               Conread position:16-426
               
               
               Cow position:chr28:8347410-8347827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:281
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):79, 167

               
               
               Conread position:16-426
               
               
               Cow position:chr28:10606924-10606538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:280
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):191, 68

               
               
               Conread position:16-432
               
               
               Cow position:chr28:23530552-23530975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:282
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):95, 124

               
               
               Conread position:16-433
               
               
               Cow position:chr28:13693437-13693852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 129

               
               
               Conread position:16-434
               
               
               Cow position:chr28:5684392-5684806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:292
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):93, 185

               
               
               Conread position:16-435
               
               
               Cow position:chr28:4282804-4282386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 230

               
               
               Conread position:16-439
               
               
               Cow position:chr28:26684803-26685225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 38

               
               
               Conread position:16-447
               
               
               Cow position:chr28:25701172-25700748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:293
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):31, 95

               
               
               Conread position:16-448
               
               
               Cow position:chr28:4308210-4307779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 138

               
               
               Conread position:16-448
               
               
               Cow position:chr28:8787238-8787657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):332, 93

               
               
               Conread position:16-448
               
               
               Cow position:chr28:11752456-11752021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 5

               
               
               Conread position:16-448
               
               
               Cow position:chr28:19222457-19222033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 208

               
               
               Conread position:16-449
               
               
               Cow position:chr28:5203893-5204314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 25

               
               
               Conread position:16-449
               
               
               Cow position:chr28:7684988-7684585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:295
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):91, 14

               
               
               Conread position:16-449
               
               
               Cow position:chr28:7698289-7697863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 21

               
               
               Conread position:16-449
               
               
               Cow position:chr28:9285676-9285258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 50

               
               
               Conread position:16-449
               
               
               Cow position:chr28:9426654-9426231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 133

               
               
               Conread position:16-449
               
               
               Cow position:chr28:14933650-14934077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 302

               
               
               Conread position:16-449
               
               
               Cow position:chr28:21844644-21845076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 208

               
               
               Conread position:16-449
               
               
               Cow position:chr28:25399578-25399987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 23

               
               
               Conread position:16-449
               
               
               Cow position:chr28:28766222-28765784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):97, 241

               
               
               Conread position:16-449
               
               
               Cow position:chr28:33884098-33884520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:277
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):21, 15

               
               
               Conread position:16-451
               
               
               Cow position:chr28:20312962-20313398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 119

               
               
               Conread position:16-452
               
               
               Cow position:chr28:13473995-13474421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 53

               
               
               Conread position:16-461
               
               
               Cow position:chr28:11585519-11585068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 8

               
               
               Conread position:16-469
               
               
               Cow position:chr28:6971651-6971209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 154

               
               
               Conread position:16-490
               
               
               Cow position:chr28:21598565-21598092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 204

               
               
               Conread position:16-494
               
               
               Cow position:chr28:3769982-3769507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:499
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 143

               
               
               Conread position:16-504
               
               
               Cow position:chr28:3914398-3914897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:501
               
               
               Alignm identity:351
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 212

               
               
               Conread position:16-506
               
               
               Cow position:chr28:25563766-25564258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:502
               
               
               Alignm identity:354
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 44

               
               
               Conread position:16-508
               
               
               Cow position:chr28:3144199-3143689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:517
               
               
               Alignm identity:364
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):219, 45

               
               
               Conread position:16-508
               
               
               Cow position:chr28:7865019-7865501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:500
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):133, 45

               
               
               Conread position:16-508
               
               
               Cow position:chr28:10589341-10588837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:513
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 124

               
               
               Conread position:16-508
               
               
               Cow position:chr28:13267469-13267965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:505
               
               
               Alignm identity:359
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 32

               
               
               Conread position:17-307
               
               
               Cow position:chr28:14493230-14493521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:197
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):50, 153

               
               
               Conread position:17-369
               
               
               Cow position:chr28:17287917-17288254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:247
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):92, 34

               
               
               Conread position:17-372
               
               
               Cow position:chr28:15007851-15008213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 39

               
               
               Conread position:17-506
               
               
               Cow position:chr28:15677589-15678062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:493
               
               
               Alignm identity:352
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 44

               
               
               Conread position:17-508
               
               
               Cow position:chr28:5826637-5827127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:504
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 132

               
               
               Conread position:17-508
               
               
               Cow position:chr28:23675837-23676310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:495
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 35

               
               
               Conread position:17-508
               
               
               Cow position:chr28:24343061-24343549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:502
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 56

               
               
               Conread position:18-295
               
               
               Cow position:chr28:10478635-10478375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:190
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):42, 31

               
               
               Conread position:18-423
               
               
               Cow position:chr28:10035106-10035479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:275
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):54, 11

               
               
               Conread position:18-434
               
               
               Cow position:chr28:8022421-8021999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 50

               
               
               Conread position:18-434
               
               
               Cow position:chr28:14997754-14998171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 104

               
               
               Conread position:18-508
               
               
               Cow position:chr28:16215201-16214689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:517
               
               
               Alignm identity:334
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):156, 263

               
               
               Conread position:19-397
               
               
               Cow position:chr28:34443073-34442692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:260
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):90, 282

               
               
               Conread position:21-434
               
               
               Cow position:chr28:10616257-10615843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 44

               
               
               Conread position:21-469
               
               
               Cow position:chr28:6059774-6059329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 43

               
               
               Conread position:21-508
               
               
               Cow position:chr28:25249066-25249531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:491
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):262, 43

               
               
               Conread position:22-506
               
               
               Cow position:chr28:18139762-18139277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:499
               
               
               Alignm identity:355
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 203

               
               
               Conread position:24-319
               
               
               Cow position:chr28:34082322-34082026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:206
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):150, 84

               
               
               Conread position:27-426
               
               
               Cow position:chr28:16412447-16412849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:259
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):91, 34

               
               
               Conread position:27-433
               
               
               Cow position:chr28:2814800-2814406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 110

               
               
               Conread position:27-445
               
               
               Cow position:chr28:5792404-5792824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 25

               
               
               Conread position:30-508
               
               
               Cow position:chr28:23008026-23007546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:491
               
               
               Alignm identity:359
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 142

               
               
               Conread position:33-449
               
               
               Cow position:chr28:26922667-26922249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 176

               
               
               Conread position:33-469
               
               
               Cow position:chr28:24966093-24966524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 161

               
               
               Conread position:34-349
               
               
               Cow position:chr28:9390659-9390346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 190

               
               
               Conread position:35-434
               
               
               Cow position:chr28:7228677-7228286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 75

               
               
               Conread position:36-451
               
               
               Cow position:chr28:5817555-5817963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 87

               
               
               Conread position:37-426
               
               
               Cow position:chr28:31110296-31109908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 264

               
               
               Conread position:41-346
               
               
               Cow position:chr28:22171006-22170695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 13

               
               
               Conread position:42-447
               
               
               Cow position:chr28:18354606-18354210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:291
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):18, 118

               
               
               Conread position:42-448
               
               
               Cow position:chr28:661835-662226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):307, 67

               
               
               Conread position:45-508
               
               
               Cow position:chr28:18934170-18934631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 12

               
               
               Conread position:46-343
               
               
               Cow position:chr28:26784750-26784452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 262

               
               
               Conread position:46-449
               
               
               Cow position:chr28:26743340-26743745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 145

               
               
               Conread position:48-457
               
               
               Cow position:chr28:12047174-12046786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:282
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):31, 43

               
               
               Conread position:49-449
               
               
               Cow position:chr28:29199448-29199849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:271
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):59, 145

               
               
               Conread position:51-507
               
               
               Cow position:chr28:23410601-23410139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 9

               
               
               Conread position:55-508
               
               
               Cow position:chr28:34199370-34198932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:308
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):46, 11

               
               
               Conread position:57-505
               
               
               Cow position:chr28:616132-616562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 79

               
               
               Conread position:62-395
               
               
               Cow position:chr28:22484983-22485317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:232
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):47, 7

               
               
               Conread position:65-505
               
               
               Cow position:chr28:20963795-20963354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 127

               
               
               Conread position:65-508
               
               
               Cow position:chr28:30608446-30608001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 157

               
               
               Conread position:66-373
               
               
               Cow position:chr28:16253117-16252814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 43

               
               
               Conread position:66-420
               
               
               Cow position:chr28:8408473-8408824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 77

               
               
               Conread position:66-504
               
               
               Cow position:chr28:9177016-9176586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 135

               
               
               Conread position:66-507
               
               
               Cow position:chr28:23459876-23460339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:311
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):29, 228

               
               
               Conread position:66-508
               
               
               Cow position:chr28:24996849-24996422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:304
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):43, 7

               
               
               Conread position:67-449
               
               
               Cow position:chr28:19026264-19025886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 77

               
               
               Conread position:67-449
               
               
               Cow position:chr28:34229968-34230347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 216

               
               
               Conread position:68-505
               
               
               Cow position:chr28:14508626-14508194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 16

               
               
               Conread position:69-507
               
               
               Cow position:chr28:21502136-21502577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 181

               
               
               Conread position:70-313
               
               
               Cow position:chr28:16244017-16243772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:177
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):39, 95

               
               
               Conread position:70-437
               
               
               Cow position:chr28:23621290-23621646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 151

               
               
               Conread position:70-487
               
               
               Cow position:chr28:14494574-14494983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:300
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):39, 100

               
               
               Conread position:71-319
               
               
               Cow position:chr28:28414413-28414664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):109, 153

               
               
               Conread position:71-379
               
               
               Cow position:chr28:15498475-15498157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:216
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):38, 194

               
               
               Conread position:71-449
               
               
               Cow position:chr28:27218063-27218441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 155

               
               
               Conread position:71-504
               
               
               Cow position:chr28:13865588-13866015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 88

               
               
               Conread position:71-508
               
               
               Cow position:chr28:26719103-26719526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 53

               
               
               Conread position:72-434
               
               
               Cow position:chr28:2862605-2862972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 153

               
               
               Conread position:74-434
               
               
               Cow position:chr28:19080102-19079742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:249
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):35, 212

               
               
               Conread position:75-449
               
               
               Cow position:chr28:22321169-22321538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:263
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):30, 227

               
               
               Conread position:77-322
               
               
               Cow position:chr28:23775793-23776038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):7, 149

               
               
               Conread position:77-346
               
               
               Cow position:chr28:5773391-5773650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:189
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:77-368
               
               
               Cow position:chr28:13607634-13607925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:206
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):31, 62

               
               
               Conread position:77-508
               
               
               Cow position:chr28:1099893-1099481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:296
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):32, 111

               
               
               Conread position:78-298
               
               
               Cow position:chr28:28076654-28076439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:154
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):96, 30

               
               
               Conread position:79-449
               
               
               Cow position:chr28:2898746-2899108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 221

               
               
               Conread position:79-449
               
               
               Cow position:chr28:5236849-5236485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:258
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):72, 30

               
               
               Conread position:80-415
               
               
               Cow position:chr28:10529731-10529405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:232
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):29, 110

               
               
               Conread position:81-290
               
               
               Cow position:chr28:17625381-17625169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:159
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):93, 27

               
               
               Conread position:87-287
               
               
               Cow position:chr28:2090925-2091132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:145
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):24, 11

               
               
               Conread position:89-395
               
               
               Cow position:chr28:4914341-4914027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:219
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):20, 219

               
               
               Conread position:89-452
               
               
               Cow position:chr28:9636696-9636335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:252
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):21, 136

               
               
               Conread position:89-468
               
               
               Cow position:chr28:11501131-11500747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 134

               
               
               Conread position:89-471
               
               
               Cow position:chr28:26220022-26220395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:256
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):26, 70

               
               
               Conread position:91-279
               
               
               Cow position:chr28:9294776-9294966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):24, 64

               
               
               Conread position:91-286
               
               
               Cow position:chr28:5658317-5658510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:140
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):20, 71

               
               
               Conread position:92-438
               
               
               Cow position:chr28:16204570-16204226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 134

               
               
               Conread position:94-449
               
               
               Cow position:chr28:5144757-5144402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 156

               
               
               Conread position:96-293
               
               
               Cow position:chr28:3077761-3077955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):15, 93

               
               
               Conread position:96-451
               
               
               Cow position:chr28:11884755-11884400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:245
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):13, 74

               
               
               Conread position:98-442
               
               
               Cow position:chr28:4841626-4841278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:255
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):9, 133

               
               
               Conread position:98-507
               
               
               Cow position:chr28:9099704-9100123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:292
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):11, 108

               
               
               Conread position:99-302
               
               
               Cow position:chr28:8656965-8656765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):10, 20

               
               
               Conread position:99-449
               
               
               Cow position:chr28:750997-751344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:238
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):73, 197

               
               
               Conread position:110-425
               
               
               Cow position:chr28:18625006-18625329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:224
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):64, 197

               
               
               Conread position:110-507
               
               
               Cow position:chr28:10053555-10053137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 194

               
               
               Conread position:113-423
               
               
               Cow position:chr28:4098632-4098923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:223
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):17, 47

               
               
               Conread position:115-471
               
               
               Cow position:chr28:11818172-11817823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:256
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):59, 79

               
               
               Conread position:115-484
               
               
               Cow position:chr28:11006965-11007354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:264
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):59, 209

               
               
               Conread position:117-448
               
               
               Cow position:chr28:5437301-5436971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:234
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):57, 106

               
               
               Conread position:117-485
               
               
               Cow position:chr28:15082134-15081767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):110, 8

               
               
               Conread position:117-508
               
               
               Cow position:chr28:5074714-5074325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:264
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):282, 52

               
               
               Conread position:126-361
               
               
               Cow position:chr28:25459325-25459564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:164
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:126-451
               
               
               Cow position:chr28:14512325-14512653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):182, 40

               
               
               Conread position:127-394
               
               
               Cow position:chr28:27313948-27313669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):54, 150

               
               
               Conread position:132-449
               
               
               Cow position:chr28:4881440-4881121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 172

               
               
               Conread position:135-402
               
               
               Cow position:chr28:10999860-10999598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):156, 47

               
               
               Conread position:135-451
               
               
               Cow position:chr28:26982938-26982617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:230
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):39, 170

               
               
               Conread position:137-508
               
               
               Cow position:chr28:23724645-23724273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:267
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):47, 89

               
               
               Conread position:138-506
               
               
               Cow position:chr28:21570001-21570351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 28

               
               
               Conread position:146-343
               
               
               Cow position:chr28:118231-118039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:146-346
               
               
               Cow position:chr28:19023957-19024159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):45, 18

               
               
               Conread position:146-502
               
               
               Cow position:chr28:2132098-2131752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:245
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):169, 15

               
               
               Conread position:146-507
               
               
               Cow position:chr28:11866845-11866473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:257
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):51, 15

               
               
               Conread position:155-402
               
               
               Cow position:chr28:17235900-17235664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):19, 45

               
               
               Conread position:156-449
               
               
               Cow position:chr28:4643932-4643651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):192, 5

               
               
               Conread position:157-434
               
               
               Cow position:chr28:20409223-20409491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:197
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):191, 62

               
               
               Conread position:157-484
               
               
               Cow position:chr28:32365681-32365995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:232
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):162, 10

               
               
               Conread position:157-485
               
               
               Cow position:chr28:23668953-23668626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:228
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):85, 21

               
               
               Conread position:157-508
               
               
               Cow position:chr28:6643446-6643103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):193, 63

               
               
               Conread position:157-508
               
               
               Cow position:chr28:17362756-17362424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:242
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):242, 15

               
               
               Conread position:158-367
               
               
               Cow position:chr28:28903836-28903627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):58, 38

               
               
               Conread position:159-451
               
               
               Cow position:chr28:18186392-18186676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):190, 26

               
               
               Conread position:161-450
               
               
               Cow position:chr28:2752662-2752374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:209
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):65, 36

               
               
               Conread position:161-471
               
               
               Cow position:chr28:2523760-2524081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):79, 30

               
               
               Conread position:162-451
               
               
               Cow position:chr28:1632819-1632536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:209
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):81, 44

               
               
               Conread position:164-508
               
               
               Cow position:chr28:21046730-21046393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:230
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):185, 83

               
               
               Conread position:165-451
               
               
               Cow position:chr28:18760208-18759934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:202
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):183, 54

               
               
               Conread position:168-449
               
               
               Cow position:chr28:13090688-13090407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):11, 45

               
               
               Conread position:171-508
               
               
               Cow position:chr28:33285268-33284932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):169, 56

               
               
               Conread position:172-448
               
               
               Cow position:chr28:24082116-24082388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):51, 18

               
               
               Conread position:172-508
               
               
               Cow position:chr28:4763723-4764054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:243
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):79, 13

               
               
               Conread position:172-508
               
               
               Cow position:chr28:22571815-22571488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):224, 7

               
               
               Conread position:173-409
               
               
               Cow position:chr28:15577414-15577183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:171
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):78, 45

               
               
               Conread position:175-508
               
               
               Cow position:chr28:30746879-30746542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:246
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):170, 45

               
               
               Conread position:191-434
               
               
               Cow position:chr28:1538033-1538265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):38, 75

               
               
               Conread position:193-434
               
               
               Cow position:chr28:5193187-5193436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):109, 8

               
               
               Conread position:194-461
               
               
               Cow position:chr28:5406421-5406681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):57, 36

               
               
               Conread position:196-422
               
               
               Cow position:chr28:3449169-3449395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:166
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):35, 24

               
               
               Conread position:196-448
               
               
               Cow position:chr28:7009105-7008860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:188
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):152, 23

               
               
               Conread position:196-470
               
               
               Cow position:chr28:8140352-8140620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:184
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):152, 23

               
               
               Conread position:196-479
               
               
               Cow position:chr28:32845064-32844784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):46, 24

               
               
               Conread position:197-505
               
               
               Cow position:chr28:11346614-11346296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:222
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):151, 93

               
               
               Conread position:198-449
               
               
               Cow position:chr28:27161460-27161208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:188
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):17, 111

               
               
               Conread position:202-449
               
               
               Cow position:chr28:32174507-32174748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):146, 18

               
               
               Conread position:210-403
               
               
               Cow position:chr28:3726766-3726957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:147
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):46, 105

               
               
               Conread position:215-449
               
               
               Cow position:chr28:3011385-3011151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:174
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):133, 87

               
               
               Conread position:215-449
               
               
               Cow position:chr28:24706790-24707016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):36, 81

               
               
               Conread position:215-508
               
               
               Cow position:chr28:1202354-1202069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):22, 10

               
               
               Conread position:220-508
               
               
               Cow position:chr28:32366344-32366075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:212
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):129, 29

               
               
               Conread position:223-503
               
               
               Cow position:chr28:19253374-19253650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:197
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):23, 100

               
               
               Conread position:224-405
               
               
               Cow position:chr28:12363264-12363082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):49, 76

               
               
               Conread position:227-508
               
               
               Cow position:chr28:19564328-19564039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):122, 22

               
               
               Conread position:227-508
               
               
               Cow position:chr28:26372630-26372917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:176
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):90, 129

               
               
               Conread position:233-506
               
               
               Cow position:chr28:9237219-9237489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):10, 70

               
               
               Conread position:233-508
               
               
               Cow position:chr28:7540254-7539981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:193
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):117, 68

               
               
               Conread position:237-448
               
               
               Cow position:chr28:8147952-8147746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:159
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):111, 57

               
               
               Conread position:237-449
               
               
               Cow position:chr28:11559724-11559513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):113, 25

               
               
               Conread position:242-469
               
               
               Cow position:chr28:7388853-7388632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):14, 54

               
               
               Conread position:243-449
               
               
               Cow position:chr28:30865335-30865536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:148
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):105, 17

               
               
               Conread position:244-449
               
               
               Cow position:chr28:7350574-7350773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):105, 49

               
               
               Conread position:244-508
               
               
               Cow position:chr28:7619236-7618964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:188
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):105, 71

               
               
               Conread position:249-449
               
               
               Cow position:chr28:17601630-17601435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):100, 18

               
               
               Conread position:250-427
               
               
               Cow position:chr28:3161031-3160857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):98, 52

               
               
               Conread position:250-471
               
               
               Cow position:chr28:25677424-25677199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):59, 47

               
               
               Conread position:251-497
               
               
               Cow position:chr28:32370950-32370705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:176
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):97, 34

               
               
               Conread position:257-508
               
               
               Cow position:chr28:3411062-3410793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:257-508
               
               
               Cow position:chr28:31166056-31165805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:185
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):92, 55

               
               
               Conread position:258-508
               
               
               Cow position:chr28:17012361-17012109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):90, 42

               
               
               Conread position:259-449
               
               
               Cow position:chr28:20759770-20759583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):86, 43

               
               
               Conread position:260-405
               
               
               Cow position:chr28:21262967-21263115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:111
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):48, 131

               
               
               Conread position:262-469
               
               
               Cow position:chr28:4823541-4823743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):86, 37

               
               
               Conread position:263-448
               
               
               Cow position:chr28:4765611-4765794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):86, 36

               
               
               Conread position:268-482
               
               
               Cow position:chr28:7805484-7805270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:171
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 38

               
               
               Conread position:275-449
               
               
               Cow position:chr28:5650790-5650619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):74, 27

               
               
               Conread position:275-498
               
               
               Cow position:chr28:20275074-20275295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):17, 23

               
               
               Conread position:277-508
               
               
               Cow position:chr28:2762143-2762368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:167
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):74, 29

               
               
               Conread position:282-448
               
               
               Cow position:chr28:3726259-3726091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):66, 12

               
               
               Conread position:285-449
               
               
               Cow position:chr28:7498192-7498028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):65, 21

               
               
               Conread position:285-499
               
               
               Cow position:chr28:7156791-7157003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:165
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):64, 16

               
               
               Conread position:291-508
               
               
               Cow position:chr28:9294532-9294315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:171
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):59, 21

               
               
               Conread position:299-449
               
               
               Cow position:chr28:2772678-2772829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:113
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):11, 51

               
               
               Conread position:301-508
               
               
               Cow position:chr28:24500175-24500384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):49, 27

               
               
               Conread position:305-451
               
               
               Cow position:chr28:18770057-18770201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):43, 77

               
               
               Conread position:306-434
               
               
               Cow position:chr28:21008691-21008562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:101
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):42, 81

               
               
               Conread position:311-449
               
               
               Cow position:chr28:8149653-8149513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:104
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:312-437
               
               
               Cow position:chr28:555484-555611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:99
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:316-508
               
               
               Cow position:chr28:16041233-16041047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:142
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):32, 56

               
               
               Conread position:331-508
               
               
               Cow position:chr28:3823136-3822964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:130
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):10, 35

               
               
               Conread position:353-508
               
               
               Cow position:chr28:6578093-6578247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:117
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):47, 21

               
               
               Conread position:353-508
               
               
               Cow position:chr28:34749757-34749913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:365-508
               
               
               Cow position:chr28:24700807-24700950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:109
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):38, 15

               
               
               Conread position:369-508
               
               
               Cow position:chr28:13061666-13061807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:107
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):30, 18

               
               
               Conread position:10-399
               
               
               Cow position:chr29:16209474-16209083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:250
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):107, 282

               
               
               Conread position:12-314
               
               
               Cow position:chr29:29477355-29477053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:211
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):90, 146

               
               
               Conread position:12-421
               
               
               Cow position:chr29:32644592-32644995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:289
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):97, 48

               
               
               Conread position:15-312
               
               
               Cow position:chr29:13128237-13127933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:196
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):85, 292

               
               
               Conread position:15-415
               
               
               Cow position:chr29:17668186-17668565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:280
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):159, 68

               
               
               Conread position:16-293
               
               
               Cow position:chr29:5977440-5977154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:205
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):93, 126

               
               
               Conread position:16-297
               
               
               Cow position:chr29:42406344-42406635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):156, 0

               
               
               Conread position:16-302
               
               
               Cow position:chr29:6635785-6636067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:203
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):93, 150

               
               
               Conread position:16-312
               
               
               Cow position:chr29:20213474-20213775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:191
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):101, 289

               
               
               Conread position:16-312
               
               
               Cow position:chr29:20626258-20626556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 149

               
               
               Conread position:16-323
               
               
               Cow position:chr29:26335697-26335387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):86, 194

               
               
               Conread position:16-346
               
               
               Cow position:chr29:24345783-24345440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:241
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):93, 220

               
               
               Conread position:16-347
               
               
               Cow position:chr29:18338864-18338532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:225
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):93, 50

               
               
               Conread position:16-349
               
               
               Cow position:chr29:27007800-27008132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:220
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):86, 66

               
               
               Conread position:16-359
               
               
               Cow position:chr29:20178449-20178113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:250
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):59, 179

               
               
               Conread position:16-362
               
               
               Cow position:chr29:27976561-27976214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:223
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):101, 63

               
               
               Conread position:16-373
               
               
               Cow position:chr29:35075542-35075183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:239
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):93, 271

               
               
               Conread position:16-373
               
               
               Cow position:chr29:38261577-38261218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:232
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):101, 252

               
               
               Conread position:16-390
               
               
               Cow position:chr29:18724075-18723696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:245
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):100, 290

               
               
               Conread position:16-394
               
               
               Cow position:chr29:9686328-9685953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 155

               
               
               Conread position:16-397
               
               
               Cow position:chr29:18212294-18211939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:265
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):95, 38

               
               
               Conread position:16-397
               
               
               Cow position:chr29:20674127-20673751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:273
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):53, 270

               
               
               Conread position:16-399
               
               
               Cow position:chr29:5550681-5551066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:248
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):101, 276

               
               
               Conread position:16-399
               
               
               Cow position:chr29:35077044-35077424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:246
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):158, 95

               
               
               Conread position:16-399
               
               
               Cow position:chr29:35484925-35485307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 282

               
               
               Conread position:16-400
               
               
               Cow position:chr29:24659419-24659036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:244
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):96, 45

               
               
               Conread position:16-425
               
               
               Cow position:chr29:21443663-21443250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 280

               
               
               Conread position:16-432
               
               
               Cow position:chr29:17409015-17409429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 54

               
               
               Conread position:16-432
               
               
               Cow position:chr29:32521544-32521965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 222

               
               
               Conread position:16-434
               
               
               Cow position:chr29:10156608-10156209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 138

               
               
               Conread position:16-434
               
               
               Cow position:chr29:32290283-32290706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 293

               
               
               Conread position:16-440
               
               
               Cow position:chr29:17543131-17543543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 228

               
               
               Conread position:16-448
               
               
               Cow position:chr29:87332-86901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):158, 23

               
               
               Conread position:16-448
               
               
               Cow position:chr29:6014778-6015237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 127

               
               
               Conread position:16-448
               
               
               Cow position:chr29:7666348-7665905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 82

               
               
               Conread position:16-448
               
               
               Cow position:chr29:11398246-11397816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:304
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):62, 149

               
               
               Conread position:16-448
               
               
               Cow position:chr29:24623922-24624358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 205

               
               
               Conread position:16-448
               
               
               Cow position:chr29:29056864-29057286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 119

               
               
               Conread position:16-448
               
               
               Cow position:chr29:39567367-39567792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 207

               
               
               Conread position:16-449
               
               
               Cow position:chr29:1325122-1325551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):160, 89

               
               
               Conread position:16-449
               
               
               Cow position:chr29:22935965-22936383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):381, 11

               
               
               Conread position:16-449
               
               
               Cow position:chr29:26017830-26017390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 111

               
               
               Conread position:16-449
               
               
               Cow position:chr29:34745973-34745547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 159

               
               
               Conread position:16-451
               
               
               Cow position:chr29:26263536-26263949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):329, 92

               
               
               Conread position:16-451
               
               
               Cow position:chr29:26778572-26778996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:289
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):98, 45

               
               
               Conread position:16-451
               
               
               Cow position:chr29:40583478-40583899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 154

               
               
               Conread position:16-470
               
               
               Cow position:chr29:9911843-9912310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 168

               
               
               Conread position:16-482
               
               
               Cow position:chr29:13127429-13126975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 154

               
               
               Conread position:16-502
               
               
               Cow position:chr29:31926609-31926133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:493
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 123

               
               
               Conread position:16-508
               
               
               Cow position:chr29:22895411-22895898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:354
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):154, 49

               
               
               Conread position:16-508
               
               
               Cow position:chr29:28195835-28195343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:355
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 45

               
               
               Conread position:16-508
               
               
               Cow position:chr29:32963221-32963713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:524
               
               
               Alignm identity:352
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):56, 223

               
               
               Conread position:16-508
               
               
               Cow position:chr29:35501964-35501475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:504
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 45

               
               
               Conread position:16-508
               
               
               Cow position:chr29:40117252-40117755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:515
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 51

               
               
               Conread position:17-344
               
               
               Cow position:chr29:12798614-12798927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:236
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):100, 61

               
               
               Conread position:17-367
               
               
               Cow position:chr29:11697130-11697482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:228
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):100, 249

               
               
               Conread position:17-400
               
               
               Cow position:chr29:2071886-2071509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 152

               
               
               Conread position:17-434
               
               
               Cow position:chr29:24952368-24952782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 102

               
               
               Conread position:17-448
               
               
               Cow position:chr29:6293782-6293369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 44

               
               
               Conread position:17-449
               
               
               Cow position:chr29:23874139-23874572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 31

               
               
               Conread position:17-452
               
               
               Cow position:chr29:19428355-19428775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):169, 37

               
               
               Conread position:17-508
               
               
               Cow position:chr29:5948105-5947643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:495
               
               
               Alignm identity:352
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 184

               
               
               Conread position:17-508
               
               
               Cow position:chr29:10154101-10153622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:498
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):225, 72

               
               
               Conread position:17-508
               
               
               Cow position:chr29:18072620-18073108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 37

               
               
               Conread position:18-290
               
               
               Cow position:chr29:36037395-36037658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):211, 91

               
               
               Conread position:18-370
               
               
               Cow position:chr29:12005081-12004730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 85

               
               
               Conread position:18-426
               
               
               Cow position:chr29:4120535-4120943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 40

               
               
               Conread position:18-448
               
               
               Cow position:chr29:32800024-32799601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 135

               
               
               Conread position:18-449
               
               
               Cow position:chr29:13372349-13372775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):97, 49

               
               
               Conread position:18-449
               
               
               Cow position:chr29:13639670-13639254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):330, 69

               
               
               Conread position:18-459
               
               
               Cow position:chr29:649951-650396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 226

               
               
               Conread position:18-473
               
               
               Cow position:chr29:13553828-13554273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 46

               
               
               Conread position:18-497
               
               
               Cow position:chr29:19907043-19907511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 39

               
               
               Conread position:18-508
               
               
               Cow position:chr29:15940955-15940467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:500
               
               
               Alignm identity:382
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 208

               
               
               Conread position:18-508
               
               
               Cow position:chr29:40337845-40337371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:499
               
               
               Alignm identity:358
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 128

               
               
               Conread position:19-470
               
               
               Cow position:chr29:19508630-19509079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:302
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):48, 168

               
               
               Conread position:20-315
               
               
               Cow position:chr29:8164177-8163877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):85, 20

               
               
               Conread position:20-434
               
               
               Cow position:chr29:43495753-43496136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:291
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):377, 16

               
               
               Conread position:22-508
               
               
               Cow position:chr29:11365944-11366404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:490
               
               
               Alignm identity:352
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 40

               
               
               Conread position:23-449
               
               
               Cow position:chr29:40096653-40097074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 79

               
               
               Conread position:28-343
               
               
               Cow position:chr29:24197935-24197637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:232
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):71, 45

               
               
               Conread position:29-346
               
               
               Cow position:chr29:26734727-26735036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:227
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):80, 142

               
               
               Conread position:30-507
               
               
               Cow position:chr29:35291794-35292275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:495
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 115

               
               
               Conread position:30-508
               
               
               Cow position:chr29:2644613-2644131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:492
               
               
               Alignm identity:294
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):49, 31

               
               
               Conread position:31-340
               
               
               Cow position:chr29:37292467-37292780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):34, 151

               
               
               Conread position:38-508
               
               
               Cow position:chr29:37961269-37960807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):204, 41

               
               
               Conread position:39-426
               
               
               Cow position:chr29:45589881-45589505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:261
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):38, 116

               
               
               Conread position:39-498
               
               
               Cow position:chr29:17400-16958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 15

               
               
               Conread position:46-363
               
               
               Cow position:chr29:9917672-9917353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:206
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):71, 267

               
               
               Conread position:46-448
               
               
               Cow position:chr29:8669067-8669465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:279
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):65, 23

               
               
               Conread position:46-449
               
               
               Cow position:chr29:6844918-6844520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 106

               
               
               Conread position:48-447
               
               
               Cow position:chr29:750185-749797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:268
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):300, 77

               
               
               Conread position:53-449
               
               
               Cow position:chr29:18878783-18878369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:278
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):46, 215

               
               
               Conread position:57-383
               
               
               Cow position:chr29:21534955-21534627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:231
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):60, 9

               
               
               Conread position:57-397
               
               
               Cow position:chr29:14501316-14501652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:237
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):115, 51

               
               
               Conread position:57-412
               
               
               Cow position:chr29:40165962-40166319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:241
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):20, 170

               
               
               Conread position:58-336
               
               
               Cow position:chr29:3395833-3396105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:197
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):51, 116

               
               
               Conread position:65-297
               
               
               Cow position:chr29:4065818-4066048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:172
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):14, 24

               
               
               Conread position:65-508
               
               
               Cow position:chr29:12761697-12762126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 88

               
               
               Conread position:65-508
               
               
               Cow position:chr29:13634570-13634130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 66

               
               
               Conread position:66-447
               
               
               Cow position:chr29:19338710-19339111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:282
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):43, 163

               
               
               Conread position:66-448
               
               
               Cow position:chr29:41530581-41530960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 149

               
               
               Conread position:66-449
               
               
               Cow position:chr29:25333722-25333349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 107

               
               
               Conread position:66-508
               
               
               Cow position:chr29:24604417-24603963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):108, 42

               
               
               Conread position:67-361
               
               
               Cow position:chr29:94813-94534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):278, 41

               
               
               Conread position:67-449
               
               
               Cow position:chr29:22175425-22175793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 42

               
               
               Conread position:70-408
               
               
               Cow position:chr29:22069012-22068669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 89

               
               
               Conread position:70-434
               
               
               Cow position:chr29:7956249-7955894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:244
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):39, 163

               
               
               Conread position:70-451
               
               
               Cow position:chr29:6217813-6217431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:266
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):38, 84

               
               
               Conread position:70-508
               
               
               Cow position:chr29:34736731-34736317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:292
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):9, 104

               
               
               Conread position:71-462
               
               
               Cow position:chr29:32655688-32655310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 25

               
               
               Conread position:71-469
               
               
               Cow position:chr29:18694993-18695382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:274
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):38, 159

               
               
               Conread position:73-279
               
               
               Cow position:chr29:4691948-4691733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):36, 157

               
               
               Conread position:73-448
               
               
               Cow position:chr29:4194383-4194017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:265
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):36, 83

               
               
               Conread position:73-449
               
               
               Cow position:chr29:31928717-31929099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 53

               
               
               Conread position:73-508
               
               
               Cow position:chr29:4367459-4367894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 250

               
               
               Conread position:74-449
               
               
               Cow position:chr29:1556671-1557043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:248
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):25, 70

               
               
               Conread position:75-404
               
               
               Cow position:chr29:9139148-9139488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 307

               
               
               Conread position:75-508
               
               
               Cow position:chr29:26298722-26299140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:294
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):39, 60

               
               
               Conread position:77-294
               
               
               Cow position:chr29:4804975-4805192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:158
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):32, 110

               
               
               Conread position:77-399
               
               
               Cow position:chr29:19389228-19389540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):32, 78

               
               
               Conread position:77-408
               
               
               Cow position:chr29:3237617-3237282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:228
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):21, 128

               
               
               Conread position:77-449
               
               
               Cow position:chr29:34297823-34297456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:251
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):32, 144

               
               
               Conread position:77-451
               
               
               Cow position:chr29:12451114-12451488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:260
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):34, 89

               
               
               Conread position:77-471
               
               
               Cow position:chr29:9938325-9937948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:272
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):30, 17

               
               
               Conread position:78-289
               
               
               Cow position:chr29:29312772-29312565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:155
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):21, 73

               
               
               Conread position:78-298
               
               
               Cow position:chr29:32767774-32767559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:154
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):96, 30

               
               
               Conread position:78-434
               
               
               Cow position:chr29:2984630-2984987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):137, 32

               
               
               Conread position:78-434
               
               
               Cow position:chr29:12784212-12783867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 102

               
               
               Conread position:78-507
               
               
               Cow position:chr29:26984974-26985397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 9

               
               
               Conread position:78-508
               
               
               Cow position:chr29:11071961-11071516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:297
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):41, 364

               
               
               Conread position:78-508
               
               
               Cow position:chr29:18021932-18021512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 68

               
               
               Conread position:79-300
               
               
               Cow position:chr29:44135717-44135494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):44, 30

               
               
               Conread position:79-400
               
               
               Cow position:chr29:27009162-27009478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:215
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):30, 152

               
               
               Conread position:79-405
               
               
               Cow position:chr29:29475503-29475188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:218
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):39, 66

               
               
               Conread position:79-432
               
               
               Cow position:chr29:17222152-17222508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 216

               
               
               Conread position:79-447
               
               
               Cow position:chr29:29769602-29769241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 76

               
               
               Conread position:79-452
               
               
               Cow position:chr29:8926715-8926346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:263
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):30, 140

               
               
               Conread position:79-496
               
               
               Cow position:chr29:44236212-44236620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:278
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):198, 34

               
               
               Conread position:80-495
               
               
               Cow position:chr29:356071-356479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 115

               
               
               Conread position:81-508
               
               
               Cow position:chr29:26317607-26318023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:277
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):30, 54

               
               
               Conread position:83-508
               
               
               Cow position:chr29:11005459-11005901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:301
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):28, 240

               
               
               Conread position:84-443
               
               
               Cow position:chr29:11787541-11787901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:249
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):25, 66

               
               
               Conread position:87-430
               
               
               Cow position:chr29:10235363-10235041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:244
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):22, 47

               
               
               Conread position:89-403
               
               
               Cow position:chr29:36183030-36183347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:232
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):22, 66

               
               
               Conread position:89-446
               
               
               Cow position:chr29:25737663-25737305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:247
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):11, 86

               
               
               Conread position:90-434
               
               
               Cow position:chr29:40852691-40853025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:242
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):84, 18

               
               
               Conread position:90-473
               
               
               Cow position:chr29:29302899-29302522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 37

               
               
               Conread position:91-422
               
               
               Cow position:chr29:11562370-11562698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:229
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):18, 56

               
               
               Conread position:92-434
               
               
               Cow position:chr29:4520092-4520433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 129

               
               
               Conread position:92-452
               
               
               Cow position:chr29:11915573-11915935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 141

               
               
               Conread position:96-412
               
               
               Cow position:chr29:23578015-23577713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:213
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):13, 125

               
               
               Conread position:96-508
               
               
               Cow position:chr29:39023577-39023167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 88

               
               
               Conread position:97-386
               
               
               Cow position:chr29:1395368-1395646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 51

               
               
               Conread position:98-418
               
               
               Cow position:chr29:22714965-22714642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):11, 127

               
               
               Conread position:98-432
               
               
               Cow position:chr29:24292642-24292963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:224
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):119, 10

               
               
               Conread position:98-448
               
               
               Cow position:chr29:25474671-25475034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:247
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):13, 35

               
               
               Conread position:98-457
               
               
               Cow position:chr29:30440687-30441056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:254
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):12, 105

               
               
               Conread position:98-506
               
               
               Cow position:chr29:16309513-16309909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 65

               
               
               Conread position:108-449
               
               
               Cow position:chr29:6286383-6286049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):240, 75

               
               
               Conread position:110-297
               
               
               Cow position:chr29:19254046-19253857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):119, 0

               
               
               Conread position:110-443
               
               
               Cow position:chr29:1229385-1229713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:240
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):61, 47

               
               
               Conread position:110-449
               
               
               Cow position:chr29:3711163-3711486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:230
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):117, 76

               
               
               Conread position:112-446
               
               
               Cow position:chr29:463875-463543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:240
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):107, 131

               
               
               Conread position:113-426
               
               
               Cow position:chr29:868552-868864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:222
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):74, 183

               
               
               Conread position:113-432
               
               
               Cow position:chr29:14034547-14034234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:212
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):63, 139

               
               
               Conread position:113-448
               
               
               Cow position:chr29:11704902-11705223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:239
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):61, 109

               
               
               Conread position:115-363
               
               
               Cow position:chr29:2532843-2533084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:181
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):70, 108

               
               
               Conread position:116-449
               
               
               Cow position:chr29:40299230-40298908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:248
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):46, 76

               
               
               Conread position:116-459
               
               
               Cow position:chr29:35677762-35677421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:240
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):113, 76

               
               
               Conread position:117-450
               
               
               Cow position:chr29:31489103-31489432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:225
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):47, 110

               
               
               Conread position:118-379
               
               
               Cow position:chr29:14484761-14484496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:120-457
               
               
               Cow position:chr29:22778395-22778053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:239
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):54, 186

               
               
               Conread position:121-446
               
               
               Cow position:chr29:38580763-38581088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 90

               
               
               Conread position:121-507
               
               
               Cow position:chr29:6337450-6337840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):227, 64

               
               
               Conread position:122-422
               
               
               Cow position:chr29:10187848-10188144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:201
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):52, 20

               
               
               Conread position:125-508
               
               
               Cow position:chr29:709331-708960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 97

               
               
               Conread position:126-427
               
               
               Cow position:chr29:41364902-41365199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:220
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):40, 143

               
               
               Conread position:132-499
               
               
               Cow position:chr29:17154574-17154943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 37

               
               
               Conread position:133-508
               
               
               Cow position:chr29:11433922-11434302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):215, 127

               
               
               Conread position:136-448
               
               
               Cow position:chr29:11054051-11053749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:226
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):212, 11

               
               
               Conread position:137-507
               
               
               Cow position:chr29:28979676-28979327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:262
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):85, 53

               
               
               Conread position:141-435
               
               
               Cow position:chr29:6870977-6870667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:212
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):157, 45

               
               
               Conread position:143-448
               
               
               Cow position:chr29:11646913-11647205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:219
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):160, 42

               
               
               Conread position:144-499
               
               
               Cow position:chr29:44988971-44988623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:245
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):30, 85

               
               
               Conread position:146-427
               
               
               Cow position:chr29:30188523-30188262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:202
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):251, 21

               
               
               Conread position:146-451
               
               
               Cow position:chr29:1022107-1022409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:207
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):71, 15

               
               
               Conread position:147-447
               
               
               Cow position:chr29:5186680-5186383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:209
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):200, 14

               
               
               Conread position:150-470
               
               
               Cow position:chr29:25924155-25923829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:219
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):24, 79

               
               
               Conread position:155-508
               
               
               Cow position:chr29:35442640-35442291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 65

               
               
               Conread position:157-397
               
               
               Cow position:chr29:27652806-27652569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:172
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):29, 41

               
               
               Conread position:157-398
               
               
               Cow position:chr29:20910877-20910632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):17, 154

               
               
               Conread position:157-449
               
               
               Cow position:chr29:37618129-37618418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):20, 64

               
               
               Conread position:159-343
               
               
               Cow position:chr29:40615696-40615517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:134
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):121, 24

               
               
               Conread position:163-498
               
               
               Cow position:chr29:44008953-44008627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:234
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):11, 134

               
               
               Conread position:170-508
               
               
               Cow position:chr29:29559883-29559551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:237
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):37, 51

               
               
               Conread position:172-434
               
               
               Cow position:chr29:24252077-24252332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:178
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):225, 48

               
               
               Conread position:172-449
               
               
               Cow position:chr29:2055899-2056173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:195
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):159, 18

               
               
               Conread position:172-463
               
               
               Cow position:chr29:16055296-16055006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):48, 152

               
               
               Conread position:172-504
               
               
               Cow position:chr29:4085158-4085482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:242
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):50, 78

               
               
               Conread position:173-370
               
               
               Cow position:chr29:45383965-45384160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):172, 47

               
               
               Conread position:174-434
               
               
               Cow position:chr29:26416201-26416448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):225, 39

               
               
               Conread position:175-449
               
               
               Cow position:chr29:12025629-12025364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:199
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):50, 45

               
               
               Conread position:176-449
               
               
               Cow position:chr29:17296974-17297248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:195
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):49, 117

               
               
               Conread position:177-491
               
               
               Cow position:chr29:41083003-41083301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):172, 34

               
               
               Conread position:180-482
               
               
               Cow position:chr29:942474-942770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):63, 39

               
               
               Conread position:181-439
               
               
               Cow position:chr29:16272573-16272843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:182
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):48, 151

               
               
               Conread position:192-395
               
               
               Cow position:chr29:17301388-17301591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:159
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):156, 28

               
               
               Conread position:192-449
               
               
               Cow position:chr29:36220386-36220646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):107, 62

               
               
               Conread position:193-421
               
               
               Cow position:chr29:4052124-4051907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:160
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):155, 27

               
               
               Conread position:196-356
               
               
               Cow position:chr29:18580152-18579992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):102, 23

               
               
               Conread position:196-505
               
               
               Cow position:chr29:6771995-6772297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:218
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):47, 24

               
               
               Conread position:198-450
               
               
               Cow position:chr29:35084358-35084109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):150, 102

               
               
               Conread position:204-463
               
               
               Cow position:chr29:34359109-34358853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:180
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):145, 15

               
               
               Conread position:205-508
               
               
               Cow position:chr29:6207936-6208231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 38

               
               
               Conread position:209-472
               
               
               Cow position:chr29:14758987-14758728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:183
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):34, 12

               
               
               Conread position:214-449
               
               
               Cow position:chr29:13028318-13028552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):88, 26

               
               
               Conread position:214-506
               
               
               Cow position:chr29:12626099-12625810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:208
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):134, 80

               
               
               Conread position:215-363
               
               
               Cow position:chr29:11489841-11489696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:215-504
               
               
               Cow position:chr29:4444596-4444885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 19

               
               
               Conread position:218-358
               
               
               Cow position:chr29:34534734-34534595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:110
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):12, 7

               
               
               Conread position:219-443
               
               
               Cow position:chr29:27873490-27873707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):129, 21

               
               
               Conread position:223-434
               
               
               Cow position:chr29:24578746-24578960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):10, 92

               
               
               Conread position:227-419
               
               
               Cow position:chr29:23233345-23233529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:141
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):122, 13

               
               
               Conread position:227-448
               
               
               Cow position:chr29:5046545-5046764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):121, 72

               
               
               Conread position:227-448
               
               
               Cow position:chr29:28993754-28993973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:166
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):110, 20

               
               
               Conread position:227-449
               
               
               Cow position:chr29:5520612-5520373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:169
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:227-506
               
               
               Cow position:chr29:1340678-1340951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:191
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):122, 16

               
               
               Conread position:228-449
               
               
               Cow position:chr29:2263105-2262883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:170
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):6, 80

               
               
               Conread position:230-449
               
               
               Cow position:chr29:22519233-22519015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):118, 13

               
               
               Conread position:232-508
               
               
               Cow position:chr29:7054313-7054581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:191
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):23, 50

               
               
               Conread position:242-487
               
               
               Cow position:chr29:25426749-25426509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):189, 50

               
               
               Conread position:244-449
               
               
               Cow position:chr29:847731-847530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):84, 36

               
               
               Conread position:244-508
               
               
               Cow position:chr29:5788917-5789205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):11, 18

               
               
               Conread position:244-508
               
               
               Cow position:chr29:22721283-22721543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):100, 36

               
               
               Conread position:248-443
               
               
               Cow position:chr29:42886464-42886649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):101, 31

               
               
               Conread position:248-508
               
               
               Cow position:chr29:21675306-21675561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):11, 61

               
               
               Conread position:250-448
               
               
               Cow position:chr29:694085-693898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):98, 49

               
               
               Conread position:250-448
               
               
               Cow position:chr29:20770259-20770455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):95, 50

               
               
               Conread position:250-448
               
               
               Cow position:chr29:31813864-31814050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):147, 46

               
               
               Conread position:250-486
               
               
               Cow position:chr29:13373215-13373447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:171
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):95, 46

               
               
               Conread position:250-508
               
               
               Cow position:chr29:13486865-13487112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:176
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):98, 44

               
               
               Conread position:252-508
               
               
               Cow position:chr29:21186956-21186703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):96, 50

               
               
               Conread position:254-450
               
               
               Cow position:chr29:8005003-8004814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):86, 45

               
               
               Conread position:255-449
               
               
               Cow position:chr29:13867291-13867098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:143
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):81, 44

               
               
               Conread position:258-506
               
               
               Cow position:chr29:5616944-5616699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:178
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):89, 13

               
               
               Conread position:259-448
               
               
               Cow position:chr29:7103480-7103669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):81, 40

               
               
               Conread position:259-449
               
               
               Cow position:chr29:32926021-32926216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:261-449
               
               
               Cow position:chr29:5210413-5210603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):39, 121

               
               
               Conread position:262-508
               
               
               Cow position:chr29:23825596-23825852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:180
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):86, 43

               
               
               Conread position:265-425
               
               
               Cow position:chr29:36830290-36830446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):80, 30

               
               
               Conread position:268-508
               
               
               Cow position:chr29:30351001-30350760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:185
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 38

               
               
               Conread position:271-508
               
               
               Cow position:chr29:4691456-4691218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:180
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):74, 49

               
               
               Conread position:275-449
               
               
               Cow position:chr29:43544661-43544491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):122, 23

               
               
               Conread position:300-508
               
               
               Cow position:chr29:8686288-8686499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:150
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):9, 150

               
               
               Conread position:308-508
               
               
               Cow position:chr29:31981800-31982012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:310-447
               
               
               Cow position:chr29:19559048-19558910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:110
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):38, 136

               
               
               Conread position:313-506
               
               
               Cow position:chr29:4423465-4423262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:150
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:316-508
               
               
               Cow position:chr29:19607545-19607354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:132
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:330-469
               
               
               Cow position:chr29:16672482-16672622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:106
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):18, 110

               
               
               Conread position:333-506
               
               
               Cow position:chr29:10318592-10318774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:333-508
               
               
               Cow position:chr29:27688744-27688572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):16, 139

               
               
               Conread position:338-508
               
               
               Cow position:chr29:21012343-21012175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):11, 37

               
               
               Conread position:366-466
               
               
               Cow position:chr29:17136057-17136157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:101
               
               
               Alignm identity:82
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:366-503
               
               
               Cow position:chr29:8794379-8794518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:112
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:374-507
               
               
               Cow position:chr29:19527-19660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:99
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:10-399
               
               
               Cow position:chr3:78023626-78023235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:251
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):99, 282

               
               
               Conread position:11-440
               
               
               Cow position:chr3:2506825-2506398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 71

               
               
               Conread position:12-311
               
               
               Cow position:chr3:38497599-38497898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:219
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):63, 197

               
               
               Conread position:12-370
               
               
               Cow position:chr3:66649787-66649431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:234
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):47, 56

               
               
               Conread position:12-399
               
               
               Cow position:chr3:35299329-35299707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):102, 159

               
               
               Conread position:12-427
               
               
               Cow position:chr3:59798909-59799316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):102, 175

               
               
               Conread position:12-433
               
               
               Cow position:chr3:15685255-15684848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):162, 97

               
               
               Conread position:12-487
               
               
               Cow position:chr3:36204205-36204680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 138

               
               
               Conread position:12-508
               
               
               Cow position:chr3:37486133-37485653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:365
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 127

               
               
               Conread position:13-448
               
               
               Cow position:chr3:7678334-7678741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:296
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):335, 15

               
               
               Conread position:14-439
               
               
               Cow position:chr3:4222976-4223379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:289
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):95, 37

               
               
               Conread position:15-448
               
               
               Cow position:chr3:48296369-48296787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):333, 210

               
               
               Conread position:15-449
               
               
               Cow position:chr3:65413629-65413187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 155

               
               
               Conread position:15-507
               
               
               Cow position:chr3:30179742-30180249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:516
               
               
               Alignm identity:363
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 58

               
               
               Conread position:16-284
               
               
               Cow position:chr3:46856553-46856280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:175
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:16-286
               
               
               Cow position:chr3:55117310-55117035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:198
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):93, 49

               
               
               Conread position:16-300
               
               
               Cow position:chr3:31903449-31903170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):135, 0

               
               
               Conread position:16-304
               
               
               Cow position:chr3:22872393-22872099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:16-305
               
               
               Cow position:chr3:33633227-33632943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:208
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):93, 74

               
               
               Conread position:16-308
               
               
               Cow position:chr3:12323727-12324026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:211
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):93, 71

               
               
               Conread position:16-309
               
               
               Cow position:chr3:22954190-22953906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:212
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):99, 66

               
               
               Conread position:16-310
               
               
               Cow position:chr3:37894651-37894952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:16-312
               
               
               Cow position:chr3:64198140-64198440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:193
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):104, 63

               
               
               Conread position:16-321
               
               
               Cow position:chr3:22021312-22021010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:222
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):99, 12

               
               
               Conread position:16-333
               
               
               Cow position:chr3:61191258-61190952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):85, 123

               
               
               Conread position:16-349
               
               
               Cow position:chr3:17952315-17952646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 158

               
               
               Conread position:16-354
               
               
               Cow position:chr3:61678350-61678699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:247
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):91, 173

               
               
               Conread position:16-356
               
               
               Cow position:chr3:57554186-57553852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 30

               
               
               Conread position:16-362
               
               
               Cow position:chr3:27544675-27544331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:251
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):61, 38

               
               
               Conread position:16-362
               
               
               Cow position:chr3:36861283-36860935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:229
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):101, 276

               
               
               Conread position:16-362
               
               
               Cow position:chr3:49975702-49975354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:228
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):101, 250

               
               
               Conread position:16-363
               
               
               Cow position:chr3:79208332-79207983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:249
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):87, 54

               
               
               Conread position:16-369
               
               
               Cow position:chr3:8148003-8147658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):332, 36

               
               
               Conread position:16-373
               
               
               Cow position:chr3:16619926-16619570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:233
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):101, 250

               
               
               Conread position:16-373
               
               
               Cow position:chr3:43463631-43463266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:229
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:16-373
               
               
               Cow position:chr3:46128311-46127952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:236
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):101, 250

               
               
               Conread position:16-373
               
               
               Cow position:chr3:66887365-66887006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:224
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):101, 275

               
               
               Conread position:16-378
               
               
               Cow position:chr3:77226981-77227338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 30

               
               
               Conread position:16-379
               
               
               Cow position:chr3:39328071-39328419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:251
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):332, 86

               
               
               Conread position:16-393
               
               
               Cow position:chr3:5851268-5850896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 208

               
               
               Conread position:16-393
               
               
               Cow position:chr3:43528578-43528199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 205

               
               
               Conread position:16-395
               
               
               Cow position:chr3:53573091-53572717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 163

               
               
               Conread position:16-395
               
               
               Cow position:chr3:79592229-79591856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:263
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):93, 43

               
               
               Conread position:16-397
               
               
               Cow position:chr3:72174188-72173805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:248
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):101, 276

               
               
               Conread position:16-399
               
               
               Cow position:chr3:53593040-53592649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 41

               
               
               Conread position:16-399
               
               
               Cow position:chr3:59865307-59865691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:247
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):99, 275

               
               
               Conread position:16-399
               
               
               Cow position:chr3:68146165-68145803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:270
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):52, 24

               
               
               Conread position:16-399
               
               
               Cow position:chr3:73211643-73212030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:248
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):93, 276

               
               
               Conread position:16-402
               
               
               Cow position:chr3:19708438-19708065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):129, 36

               
               
               Conread position:16-408
               
               
               Cow position:chr3:25690452-25690842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 29

               
               
               Conread position:16-408
               
               
               Cow position:chr3:60933091-60933466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:274
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):165, 38

               
               
               Conread position:16-408
               
               
               Cow position:chr3:75727930-75727533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 283

               
               
               Conread position:16-413
               
               
               Cow position:chr3:66610179-66609790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 154

               
               
               Conread position:16-419
               
               
               Cow position:chr3:57577359-57577757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):177, 14

               
               
               Conread position:16-422
               
               
               Cow position:chr3:50069438-50069826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:274
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):51, 67

               
               
               Conread position:16-426
               
               
               Cow position:chr3:56697598-56698013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:264
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):101, 271

               
               
               Conread position:16-427
               
               
               Cow position:chr3:34556562-34556172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:278
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):259, 88

               
               
               Conread position:16-427
               
               
               Cow position:chr3:80468992-80468610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:283
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):60, 81

               
               
               Conread position:16-432
               
               
               Cow position:chr3:19711656-19711267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:290
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):97, 121

               
               
               Conread position:16-433
               
               
               Cow position:chr3:59630841-59630439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 173

               
               
               Conread position:16-433
               
               
               Cow position:chr3:72131642-72131224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 45

               
               
               Conread position:16-434
               
               
               Cow position:chr3:49218648-49218228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 120

               
               
               Conread position:16-434
               
               
               Cow position:chr3:71231065-71231470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 133

               
               
               Conread position:16-434
               
               
               Cow position:chr3:80053875-80053468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 139

               
               
               Conread position:16-437
               
               
               Cow position:chr3:12675370-12674965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):144, 29

               
               
               Conread position:16-440
               
               
               Cow position:chr3:35852810-35852390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 198

               
               
               Conread position:16-446
               
               
               Cow position:chr3:59473775-59474209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 69

               
               
               Conread position:16-447
               
               
               Cow position:chr3:48241280-48241702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 178

               
               
               Conread position:16-447
               
               
               Cow position:chr3:49650040-49650476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 14

               
               
               Conread position:16-448
               
               
               Cow position:chr3:2393313-2392879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 182

               
               
               Conread position:16-448
               
               
               Cow position:chr3:17222492-17222051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 155

               
               
               Conread position:16-448
               
               
               Cow position:chr3:45184182-45183743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:298
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):95, 26

               
               
               Conread position:16-448
               
               
               Cow position:chr3:55010492-55010076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 5

               
               
               Conread position:16-448
               
               
               Cow position:chr3:59588178-59588599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:288
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):95, 245

               
               
               Conread position:16-448
               
               
               Cow position:chr3:65236678-65237113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 145

               
               
               Conread position:16-448
               
               
               Cow position:chr3:80071776-80072218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 215

               
               
               Conread position:16-449
               
               
               Cow position:chr3:209981-210409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 154

               
               
               Conread position:16-449
               
               
               Cow position:chr3:12712264-12711825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):99, 294

               
               
               Conread position:16-449
               
               
               Cow position:chr3:14263054-14263482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 51

               
               
               Conread position:16-449
               
               
               Cow position:chr3:14466045-14465617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 118

               
               
               Conread position:16-449
               
               
               Cow position:chr3:26219402-26218963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 216

               
               
               Conread position:16-449
               
               
               Cow position:chr3:45881568-45881988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 205

               
               
               Conread position:16-449
               
               
               Cow position:chr3:56582506-56582933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:290
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):101, 14

               
               
               Conread position:16-449
               
               
               Cow position:chr3:61225075-61224652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:284
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):93, 33

               
               
               Conread position:16-450
               
               
               Cow position:chr3:80581335-80581746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 11

               
               
               Conread position:16-451
               
               
               Cow position:chr3:66708413-66707975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 33

               
               
               Conread position:16-451
               
               
               Cow position:chr3:74233869-74234278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):135, 44

               
               
               Conread position:16-451
               
               
               Cow position:chr3:79884827-79884396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 281

               
               
               Conread position:16-455
               
               
               Cow position:chr3:14626491-14626054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):322, 150

               
               
               Conread position:16-455
               
               
               Cow position:chr3:18066793-18067228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 207

               
               
               Conread position:16-473
               
               
               Cow position:chr3:33327353-33327823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 107

               
               
               Conread position:16-473
               
               
               Cow position:chr3:58286236-58285795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 51

               
               
               Conread position:16-477
               
               
               Cow position:chr3:12255139-12255595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 127

               
               
               Conread position:16-477
               
               
               Cow position:chr3:26554055-26553603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:360
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 101

               
               
               Conread position:16-485
               
               
               Cow position:chr3:46094488-46094947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 167

               
               
               Conread position:16-486
               
               
               Cow position:chr3:34086399-34085929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:301
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):100, 54

               
               
               Conread position:16-489
               
               
               Cow position:chr3:15655485-15655016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:356
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 54

               
               
               Conread position:16-491
               
               
               Cow position:chr3:51147006-51146540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 45

               
               
               Conread position:16-497
               
               
               Cow position:chr3:53588733-53588247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:493
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 145

               
               
               Conread position:16-499
               
               
               Cow position:chr3:4049862-4050339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:355
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 103

               
               
               Conread position:16-505
               
               
               Cow position:chr3:83490737-83491244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:515
               
               
               Alignm identity:353
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 10

               
               
               Conread position:16-506
               
               
               Cow position:chr3:48252555-48253044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:352
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 98

               
               
               Conread position:16-506
               
               
               Cow position:chr3:50614304-50614788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:493
               
               
               Alignm identity:372
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):327, 72

               
               
               Conread position:16-508
               
               
               Cow position:chr3:5365344-5365832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:504
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 140

               
               
               Conread position:16-508
               
               
               Cow position:chr3:13577538-13577052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:364
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 216

               
               
               Conread position:16-508
               
               
               Cow position:chr3:20471707-20471218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:504
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 158

               
               
               Conread position:16-508
               
               
               Cow position:chr3:28908544-28908049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:359
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 137

               
               
               Conread position:16-508
               
               
               Cow position:chr3:29887765-29887273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 153

               
               
               Conread position:16-508
               
               
               Cow position:chr3:37186500-37186975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:494
               
               
               Alignm identity:369
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):333, 41

               
               
               Conread position:16-508
               
               
               Cow position:chr3:60597213-60597704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:355
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):332, 11

               
               
               Conread position:16-508
               
               
               Cow position:chr3:69751042-69750568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:499
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 151

               
               
               Conread position:16-508
               
               
               Cow position:chr3:80818395-80818849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:497
               
               
               Alignm identity:356
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 47

               
               
               Conread position:17-351
               
               
               Cow position:chr3:2903638-2903303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:233
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):81, 212

               
               
               Conread position:17-425
               
               
               Cow position:chr3:49461277-49460860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 289

               
               
               Conread position:17-426
               
               
               Cow position:chr3:53384623-53384213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 146

               
               
               Conread position:17-427
               
               
               Cow position:chr3:20438001-20437588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 161

               
               
               Conread position:17-432
               
               
               Cow position:chr3:72390743-72391154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 74

               
               
               Conread position:17-434
               
               
               Cow position:chr3:5101100-5100697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 156

               
               
               Conread position:17-434
               
               
               Cow position:chr3:61839951-61840350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):97, 56

               
               
               Conread position:17-438
               
               
               Cow position:chr3:58350238-58350651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:296
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):62, 108

               
               
               Conread position:17-443
               
               
               Cow position:chr3:64011156-64010731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 52

               
               
               Conread position:17-447
               
               
               Cow position:chr3:49382612-49383037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 173

               
               
               Conread position:17-447
               
               
               Cow position:chr3:77271618-77271190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 168

               
               
               Conread position:17-447
               
               
               Cow position:chr3:83816141-83815700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:290
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):59, 206

               
               
               Conread position:17-448
               
               
               Cow position:chr3:80564621-80565055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 20

               
               
               Conread position:17-449
               
               
               Cow position:chr3:9663527-9663082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 256

               
               
               Conread position:17-449
               
               
               Cow position:chr3:11986991-11987419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 48

               
               
               Conread position:17-449
               
               
               Cow position:chr3:53149986-53150421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 191

               
               
               Conread position:17-449
               
               
               Cow position:chr3:71497486-71497048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 180

               
               
               Conread position:17-451
               
               
               Cow position:chr3:58766952-58767355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):332, 37

               
               
               Conread position:17-455
               
               
               Cow position:chr3:1830905-1830480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 117

               
               
               Conread position:17-506
               
               
               Cow position:chr3:54434633-54435133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:365
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 44

               
               
               Conread position:17-508
               
               
               Cow position:chr3:18459860-18459370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:353
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 176

               
               
               Conread position:17-508
               
               
               Cow position:chr3:24352549-24353007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:497
               
               
               Alignm identity:354
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 42

               
               
               Conread position:17-508
               
               
               Cow position:chr3:26903777-26904266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:504
               
               
               Alignm identity:361
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 56

               
               
               Conread position:17-508
               
               
               Cow position:chr3:68586701-68587186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:362
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 44

               
               
               Conread position:18-288
               
               
               Cow position:chr3:27285890-27286164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:193
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):91, 27

               
               
               Conread position:18-300
               
               
               Cow position:chr3:44535099-44534816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:198
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):61, 72

               
               
               Conread position:18-307
               
               
               Cow position:chr3:15662037-15661747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 36

               
               
               Conread position:18-391
               
               
               Cow position:chr3:80082156-80081783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 169

               
               
               Conread position:18-393
               
               
               Cow position:chr3:56637320-56637698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:274
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):40, 226

               
               
               Conread position:18-412
               
               
               Cow position:chr3:31047281-31046899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:264
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):327, 91

               
               
               Conread position:18-427
               
               
               Cow position:chr3:52148015-52147583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:293
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):153, 90

               
               
               Conread position:18-434
               
               
               Cow position:chr3:49327607-49328019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):156, 62

               
               
               Conread position:18-434
               
               
               Cow position:chr3:79292496-79292903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 50

               
               
               Conread position:18-448
               
               
               Cow position:chr3:37599755-37599339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 183

               
               
               Conread position:18-449
               
               
               Cow position:chr3:7566755-7566327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 36

               
               
               Conread position:18-449
               
               
               Cow position:chr3:14552540-14552965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 20

               
               
               Conread position:18-449
               
               
               Cow position:chr3:59451256-59451694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 14

               
               
               Conread position:18-449
               
               
               Cow position:chr3:61323015-61323421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:301
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):91, 63

               
               
               Conread position:18-449
               
               
               Cow position:chr3:73708720-73709136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):330, 43

               
               
               Conread position:18-449
               
               
               Cow position:chr3:81471436-81471006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 49

               
               
               Conread position:18-506
               
               
               Cow position:chr3:64536881-64536423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:492
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):127, 122

               
               
               Conread position:19-443
               
               
               Cow position:chr3:72675749-72676175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 213

               
               
               Conread position:19-508
               
               
               Cow position:chr3:42584194-42584686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:354
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 192

               
               
               Conread position:21-330
               
               
               Cow position:chr3:19717426-19717119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:225
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):46, 177

               
               
               Conread position:21-432
               
               
               Cow position:chr3:42489652-42489228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:277
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):51, 94

               
               
               Conread position:21-496
               
               
               Cow position:chr3:34270598-34271054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 40

               
               
               Conread position:22-408
               
               
               Cow position:chr3:67929601-67929211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 107

               
               
               Conread position:22-434
               
               
               Cow position:chr3:26920560-26920985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 255

               
               
               Conread position:22-447
               
               
               Cow position:chr3:65058367-65058786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 116

               
               
               Conread position:22-449
               
               
               Cow position:chr3:59596870-59597268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:294
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):87, 27

               
               
               Conread position:22-508
               
               
               Cow position:chr3:54340751-54340274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:498
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 206

               
               
               Conread position:23-397
               
               
               Cow position:chr3:78076858-78077222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:263
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):88, 38

               
               
               Conread position:26-309
               
               
               Cow position:chr3:2630470-2630747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:191
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):85, 35

               
               
               Conread position:26-434
               
               
               Cow position:chr3:58969224-58968828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 83

               
               
               Conread position:26-443
               
               
               Cow position:chr3:59101504-59101911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 130

               
               
               Conread position:27-310
               
               
               Cow position:chr3:3164823-3164541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:202
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):82, 27

               
               
               Conread position:27-338
               
               
               Cow position:chr3:43658046-43657728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:218
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):41, 203

               
               
               Conread position:27-343
               
               
               Cow position:chr3:41367313-41366998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 76

               
               
               Conread position:27-369
               
               
               Cow position:chr3:42177830-42178166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):162, 151

               
               
               Conread position:27-446
               
               
               Cow position:chr3:17935257-17934851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 132

               
               
               Conread position:29-426
               
               
               Cow position:chr3:58206779-58206382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:277
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):70, 97

               
               
               Conread position:29-441
               
               
               Cow position:chr3:27546162-27545737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 35

               
               
               Conread position:29-508
               
               
               Cow position:chr3:5420194-5419720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:491
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 201

               
               
               Conread position:30-403
               
               
               Cow position:chr3:83920874-83921228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:269
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):79, 31

               
               
               Conread position:30-448
               
               
               Cow position:chr3:55970180-55970595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 79

               
               
               Conread position:32-408
               
               
               Cow position:chr3:54903248-54903613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:267
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):142, 62

               
               
               Conread position:32-434
               
               
               Cow position:chr3:46900869-46901273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 194

               
               
               Conread position:33-346
               
               
               Cow position:chr3:59271235-59271528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:34-434
               
               
               Cow position:chr3:2024861-2025273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 146

               
               
               Conread position:35-372
               
               
               Cow position:chr3:42358992-42359327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):82, 227

               
               
               Conread position:35-432
               
               
               Cow position:chr3:28898550-28898151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 74

               
               
               Conread position:35-508
               
               
               Cow position:chr3:77224792-77225260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:351
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 165

               
               
               Conread position:37-449
               
               
               Cow position:chr3:67704216-67704636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 190

               
               
               Conread position:40-433
               
               
               Cow position:chr3:66292490-66292102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 11

               
               
               Conread position:40-456
               
               
               Cow position:chr3:53112851-53113272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 187

               
               
               Conread position:42-448
               
               
               Cow position:chr3:37041114-37041508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 70

               
               
               Conread position:42-469
               
               
               Cow position:chr3:65968840-65969275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 429

               
               
               Conread position:45-449
               
               
               Cow position:chr3:53270513-53270920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 262

               
               
               Conread position:47-452
               
               
               Cow position:chr3:82460873-82461272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 107

               
               
               Conread position:48-370
               
               
               Cow position:chr3:65800286-65800602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 62

               
               
               Conread position:54-434
               
               
               Cow position:chr3:2518840-2518464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:253
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):63, 248

               
               
               Conread position:54-449
               
               
               Cow position:chr3:53909811-53910198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:274
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):53, 35

               
               
               Conread position:54-449
               
               
               Cow position:chr3:70401600-70401986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 49

               
               
               Conread position:56-408
               
               
               Cow position:chr3:72473606-72473964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:242
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):59, 251

               
               
               Conread position:57-346
               
               
               Cow position:chr3:24305205-24304930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):43, 74

               
               
               Conread position:57-383
               
               
               Cow position:chr3:54959891-54960211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:233
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):51, 129

               
               
               Conread position:57-473
               
               
               Cow position:chr3:45647835-45648245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 129

               
               
               Conread position:57-507
               
               
               Cow position:chr3:30463466-30463010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:314
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):52, 170

               
               
               Conread position:57-508
               
               
               Cow position:chr3:29507295-29507730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 165

               
               
               Conread position:60-443
               
               
               Cow position:chr3:4031670-4032047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 6

               
               
               Conread position:60-507
               
               
               Cow position:chr3:64172149-64172588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 6

               
               
               Conread position:65-302
               
               
               Cow position:chr3:25691457-25691700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:184
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):44, 134

               
               
               Conread position:65-422
               
               
               Cow position:chr3:78530244-78530605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 134

               
               
               Conread position:65-482
               
               
               Cow position:chr3:36100536-36100957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 265

               
               
               Conread position:65-485
               
               
               Cow position:chr3:48629878-48629463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 110

               
               
               Conread position:65-491
               
               
               Cow position:chr3:27532954-27532523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 161

               
               
               Conread position:65-506
               
               
               Cow position:chr3:8752507-8752931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:298
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):177, 29

               
               
               Conread position:65-508
               
               
               Cow position:chr3:41718099-41718538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):154, 40

               
               
               Conread position:65-508
               
               
               Cow position:chr3:74533056-74533501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 160

               
               
               Conread position:66-284
               
               
               Cow position:chr3:18854802-18855023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:163
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):43, 97

               
               
               Conread position:66-288
               
               
               Cow position:chr3:48433653-48433882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:162
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):13, 184

               
               
               Conread position:66-356
               
               
               Cow position:chr3:44623188-44622890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:215
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):120, 95

               
               
               Conread position:66-422
               
               
               Cow position:chr3:73759810-73759454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 66

               
               
               Conread position:66-432
               
               
               Cow position:chr3:71430498-71430132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):104, 25

               
               
               Conread position:66-433
               
               
               Cow position:chr3:53739482-53739111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 160

               
               
               Conread position:66-448
               
               
               Cow position:chr3:14602004-14601615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 86

               
               
               Conread position:66-449
               
               
               Cow position:chr3:33253171-33252799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:263
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):11, 30

               
               
               Conread position:66-449
               
               
               Cow position:chr3:56059516-56059901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 97

               
               
               Conread position:66-487
               
               
               Cow position:chr3:8393648-8394066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 130

               
               
               Conread position:66-508
               
               
               Cow position:chr3:58174620-58175048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:304
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):43, 65

               
               
               Conread position:67-508
               
               
               Cow position:chr3:31933392-31932957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:293
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):43, 108

               
               
               Conread position:67-508
               
               
               Cow position:chr3:64281226-64280771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 158

               
               
               Conread position:68-432
               
               
               Cow position:chr3:51598095-51598444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:236
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):46, 102

               
               
               Conread position:68-434
               
               
               Cow position:chr3:80740287-80740637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:253
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):9, 25

               
               
               Conread position:68-471
               
               
               Cow position:chr3:63147433-63147040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:271
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):41, 106

               
               
               Conread position:69-448
               
               
               Cow position:chr3:73467331-73467724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:269
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):45, 75

               
               
               Conread position:69-449
               
               
               Cow position:chr3:23408630-23408268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:270
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):45, 36

               
               
               Conread position:70-508
               
               
               Cow position:chr3:23111791-23111366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 157

               
               
               Conread position:70-508
               
               
               Cow position:chr3:29812957-29813393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 35

               
               
               Conread position:70-508
               
               
               Cow position:chr3:42480337-42480762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):104, 28

               
               
               Conread position:71-314
               
               
               Cow position:chr3:81401586-81401348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:176
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):90, 23

               
               
               Conread position:71-340
               
               
               Cow position:chr3:32869863-32870130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:195
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):31, 103

               
               
               Conread position:71-372
               
               
               Cow position:chr3:59333489-59333783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:216
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):106, 33

               
               
               Conread position:71-408
               
               
               Cow position:chr3:74699681-74699334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 63

               
               
               Conread position:71-422
               
               
               Cow position:chr3:63203159-63203496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:248
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):38, 116

               
               
               Conread position:71-432
               
               
               Cow position:chr3:76387898-76387535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:267
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):40, 164

               
               
               Conread position:71-434
               
               
               Cow position:chr3:56655-56302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 116

               
               
               Conread position:71-434
               
               
               Cow position:chr3:5096917-5097282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 109

               
               
               Conread position:71-439
               
               
               Cow position:chr3:37451783-37452148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 78

               
               
               Conread position:71-449
               
               
               Cow position:chr3:63179582-63179944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:266
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):38, 103

               
               
               Conread position:71-451
               
               
               Cow position:chr3:54740157-54739795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:255
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):40, 102

               
               
               Conread position:71-452
               
               
               Cow position:chr3:78946125-78945746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 64

               
               
               Conread position:71-477
               
               
               Cow position:chr3:58540816-58540402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 39

               
               
               Conread position:71-503
               
               
               Cow position:chr3:82075334-82074920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:272
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):38, 83

               
               
               Conread position:71-504
               
               
               Cow position:chr3:54862710-54862278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 241

               
               
               Conread position:71-506
               
               
               Cow position:chr3:17957181-17957626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:303
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):40, 52

               
               
               Conread position:71-508
               
               
               Cow position:chr3:13330058-13329626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 116

               
               
               Conread position:71-508
               
               
               Cow position:chr3:15229105-15228674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 151

               
               
               Conread position:71-508
               
               
               Cow position:chr3:23471754-23471296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 190

               
               
               Conread position:71-508
               
               
               Cow position:chr3:58130714-58131139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:301
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):38, 154

               
               
               Conread position:71-508
               
               
               Cow position:chr3:67744914-67744474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 156

               
               
               Conread position:72-411
               
               
               Cow position:chr3:49140332-49139997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:250
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):92, 37

               
               
               Conread position:72-447
               
               
               Cow position:chr3:29596106-29596477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:264
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):16, 119

               
               
               Conread position:72-449
               
               
               Cow position:chr3:21081670-21081296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:258
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):37, 48

               
               
               Conread position:72-507
               
               
               Cow position:chr3:68881394-68880965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:299
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):102, 35

               
               
               Conread position:73-447
               
               
               Cow position:chr3:59205957-59206325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:256
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):34, 151

               
               
               Conread position:73-449
               
               
               Cow position:chr3:61278622-61278998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 233

               
               
               Conread position:73-481
               
               
               Cow position:chr3:8457373-8457776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 14

               
               
               Conread position:73-508
               
               
               Cow position:chr3:73764477-73764048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):202, 36

               
               
               Conread position:74-435
               
               
               Cow position:chr3:39171767-39171410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 149

               
               
               Conread position:74-486
               
               
               Cow position:chr3:62292399-62292000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:282
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):35, 50

               
               
               Conread position:74-507
               
               
               Cow position:chr3:3985047-3985482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 114

               
               
               Conread position:76-369
               
               
               Cow position:chr3:75057395-75057121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:216
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):268, 34

               
               
               Conread position:76-447
               
               
               Cow position:chr3:38691686-38691318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 118

               
               
               Conread position:76-448
               
               
               Cow position:chr3:49482985-49482627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:257
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):140, 28

               
               
               Conread position:77-305
               
               
               Cow position:chr3:66116392-66116162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:165
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):32, 145

               
               
               Conread position:77-364
               
               
               Cow position:chr3:22170909-22171195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:203
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):32, 108

               
               
               Conread position:77-405
               
               
               Cow position:chr3:17456549-17456222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:228
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):32, 171

               
               
               Conread position:77-414
               
               
               Cow position:chr3:81277984-81277637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:241
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):22, 149

               
               
               Conread position:77-432
               
               
               Cow position:chr3:75158085-75158428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:250
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):34, 78

               
               
               Conread position:77-435
               
               
               Cow position:chr3:55124558-55124204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 155

               
               
               Conread position:77-448
               
               
               Cow position:chr3:57763943-57764306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 148

               
               
               Conread position:77-449
               
               
               Cow position:chr3:53046937-53046573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 116

               
               
               Conread position:77-449
               
               
               Cow position:chr3:66901022-66900643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 197

               
               
               Conread position:77-451
               
               
               Cow position:chr3:77365574-77365198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 77

               
               
               Conread position:77-508
               
               
               Cow position:chr3:26065721-26066154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 120

               
               
               Conread position:77-508
               
               
               Cow position:chr3:62883922-62884345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 83

               
               
               Conread position:77-508
               
               
               Cow position:chr3:76138209-76138626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:287
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):34, 89

               
               
               Conread position:78-346
               
               
               Cow position:chr3:49731916-49731654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):33, 109

               
               
               Conread position:78-469
               
               
               Cow position:chr3:44101702-44102076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:279
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):27, 67

               
               
               Conread position:79-463
               
               
               Cow position:chr3:68627953-68627587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:268
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):30, 87

               
               
               Conread position:79-508
               
               
               Cow position:chr3:29360413-29359997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 30

               
               
               Conread position:81-379
               
               
               Cow position:chr3:74499948-74500262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:215
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:81-508
               
               
               Cow position:chr3:23944821-23945267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 142

               
               
               Conread position:82-508
               
               
               Cow position:chr3:15052212-15051785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):263, 27

               
               
               Conread position:83-449
               
               
               Cow position:chr3:75046144-75045786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:254
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):261, 69

               
               
               Conread position:87-449
               
               
               Cow position:chr3:43571472-43571836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:236
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):261, 160

               
               
               Conread position:89-364
               
               
               Cow position:chr3:84000344-84000617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:202
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):20, 207

               
               
               Conread position:89-386
               
               
               Cow position:chr3:52650797-52650501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:217
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):87, 19

               
               
               Conread position:89-412
               
               
               Cow position:chr3:14633254-14632930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 76

               
               
               Conread position:89-447
               
               
               Cow position:chr3:51578589-51578238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:253
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):20, 135

               
               
               Conread position:89-449
               
               
               Cow position:chr3:13302124-13301761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:260
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):20, 101

               
               
               Conread position:89-508
               
               
               Cow position:chr3:8923777-8924189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 27

               
               
               Conread position:89-508
               
               
               Cow position:chr3:74611294-74611712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 135

               
               
               Conread position:90-434
               
               
               Cow position:chr3:83455419-83455077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:225
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):19, 133

               
               
               Conread position:91-452
               
               
               Cow position:chr3:14801489-14801837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:235
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):236, 17

               
               
               Conread position:92-449
               
               
               Cow position:chr3:73394851-73395206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 208

               
               
               Conread position:93-433
               
               
               Cow position:chr3:26970565-26970887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:241
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):83, 15

               
               
               Conread position:93-505
               
               
               Cow position:chr3:54881495-54881920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 16

               
               
               Conread position:94-506
               
               
               Cow position:chr3:23092242-23091832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 14

               
               
               Conread position:95-323
               
               
               Cow position:chr3:45307673-45307898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):12, 129

               
               
               Conread position:95-434
               
               
               Cow position:chr3:75050880-75050544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:223
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):14, 93

               
               
               Conread position:95-508
               
               
               Cow position:chr3:51234358-51233937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 84

               
               
               Conread position:96-284
               
               
               Cow position:chr3:55970964-55971154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):6, 96

               
               
               Conread position:96-349
               
               
               Cow position:chr3:73590259-73590005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):13, 27

               
               
               Conread position:96-358
               
               
               Cow position:chr3:28692690-28692431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:191
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):15, 69

               
               
               Conread position:96-449
               
               
               Cow position:chr3:2680251-2680603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:237
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):11, 201

               
               
               Conread position:96-449
               
               
               Cow position:chr3:75080505-75080850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:245
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):13, 72

               
               
               Conread position:97-449
               
               
               Cow position:chr3:73460720-73461056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:239
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):252, 75

               
               
               Conread position:98-382
               
               
               Cow position:chr3:14625647-14625368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:213
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):11, 73

               
               
               Conread position:99-343
               
               
               Cow position:chr3:4087424-4087177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:175
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):10, 94

               
               
               Conread position:99-397
               
               
               Cow position:chr3:22820312-22820608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 66

               
               
               Conread position:100-449
               
               
               Cow position:chr3:57624211-57624554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 70

               
               
               Conread position:101-448
               
               
               Cow position:chr3:71135533-71135875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:229
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):17, 124

               
               
               Conread position:110-289
               
               
               Cow position:chr3:23269857-23270031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:110-378
               
               
               Cow position:chr3:41328210-41328459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:189
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:110-397
               
               
               Cow position:chr3:63332565-63332855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:198
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):64, 138

               
               
               Conread position:110-430
               
               
               Cow position:chr3:23445135-23444817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):199, 59

               
               
               Conread position:110-448
               
               
               Cow position:chr3:15752873-15752547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:240
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):288, 51

               
               
               Conread position:110-448
               
               
               Cow position:chr3:52652319-52651991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):238, 73

               
               
               Conread position:113-266
               
               
               Cow position:chr3:12563236-12563388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:113-508
               
               
               Cow position:chr3:18686674-18687068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):231, 40

               
               
               Conread position:114-307
               
               
               Cow position:chr3:8604255-8604064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:114-508
               
               
               Cow position:chr3:55992112-55991721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 90

               
               
               Conread position:115-363
               
               
               Cow position:chr3:16362978-16362732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):59, 86

               
               
               Conread position:115-432
               
               
               Cow position:chr3:70334941-70334622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:228
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):104, 14

               
               
               Conread position:117-415
               
               
               Cow position:chr3:34937602-34937900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:214
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):57, 111

               
               
               Conread position:118-452
               
               
               Cow position:chr3:27940365-27940050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:234
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):194, 101

               
               
               Conread position:118-508
               
               
               Cow position:chr3:18725872-18725496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):231, 104

               
               
               Conread position:119-508
               
               
               Cow position:chr3:18217002-18216628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:276
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):57, 80

               
               
               Conread position:120-399
               
               
               Cow position:chr3:188624-188911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:196
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):77, 60

               
               
               Conread position:120-448
               
               
               Cow position:chr3:11711718-11712044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 12

               
               
               Conread position:121-449
               
               
               Cow position:chr3:59621871-59621558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:232
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):227, 24

               
               
               Conread position:122-383
               
               
               Cow position:chr3:55106676-55106416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):50, 173

               
               
               Conread position:124-447
               
               
               Cow position:chr3:78092740-78092424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):50, 7

               
               
               Conread position:125-508
               
               
               Cow position:chr3:55373805-55373418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:269
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):62, 100

               
               
               Conread position:126-432
               
               
               Cow position:chr3:27697208-27696907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:212
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):22, 36

               
               
               Conread position:126-508
               
               
               Cow position:chr3:34669961-34669596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 9

               
               
               Conread position:129-320
               
               
               Cow position:chr3:78739633-78739820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):19, 59

               
               
               Conread position:129-449
               
               
               Cow position:chr3:26960821-26960498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):45, 168

               
               
               Conread position:132-359
               
               
               Cow position:chr3:47524732-47524507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):35, 90

               
               
               Conread position:132-505
               
               
               Cow position:chr3:3736064-3736445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 13

               
               
               Conread position:133-449
               
               
               Cow position:chr3:83215031-83215352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):83, 173

               
               
               Conread position:133-508
               
               
               Cow position:chr3:2198660-2199031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):118, 87

               
               
               Conread position:134-449
               
               
               Cow position:chr3:74134484-74134794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):211, 85

               
               
               Conread position:135-317
               
               
               Cow position:chr3:63038916-63039090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:135-449
               
               
               Cow position:chr3:45211075-45211391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:220
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):39, 98

               
               
               Conread position:136-448
               
               
               Cow position:chr3:5366553-5366857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:215
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):57, 16

               
               
               Conread position:137-397
               
               
               Cow position:chr3:67698061-67698313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:175
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:139-429
               
               
               Cow position:chr3:76713538-76713257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:215
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):86, 33

               
               
               Conread position:140-397
               
               
               Cow position:chr3:25944862-25945130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):40, 191

               
               
               Conread position:140-448
               
               
               Cow position:chr3:23105581-23105273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:211
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):209, 79

               
               
               Conread position:140-505
               
               
               Cow position:chr3:26739637-26739260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:255
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):33, 155

               
               
               Conread position:141-303
               
               
               Cow position:chr3:10173349-10173186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:124
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):33, 83

               
               
               Conread position:141-346
               
               
               Cow position:chr3:3062348-3062553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):78, 45

               
               
               Conread position:141-412
               
               
               Cow position:chr3:74878804-74878536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:197
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):74, 50

               
               
               Conread position:141-420
               
               
               Cow position:chr3:15976954-15977242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):102, 79

               
               
               Conread position:141-504
               
               
               Cow position:chr3:61009648-61009297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:248
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):45, 13

               
               
               Conread position:144-439
               
               
               Cow position:chr3:4319499-4319791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:212
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):36, 101

               
               
               Conread position:146-468
               
               
               Cow position:chr3:36375752-36375430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:226
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):76, 15

               
               
               Conread position:146-507
               
               
               Cow position:chr3:55712221-55712597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 15

               
               
               Conread position:147-408
               
               
               Cow position:chr3:34741657-34741920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):20, 86

               
               
               Conread position:147-419
               
               
               Cow position:chr3:55777825-55778096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:196
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):26, 77

               
               
               Conread position:147-506
               
               
               Cow position:chr3:49132258-49131916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:255
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):24, 77

               
               
               Conread position:148-361
               
               
               Cow position:chr3:15859873-15859665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:160
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):200, 13

               
               
               Conread position:148-435
               
               
               Cow position:chr3:10896621-10896898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:218
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):24, 76

               
               
               Conread position:150-433
               
               
               Cow position:chr3:7940761-7940483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:197
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):195, 69

               
               
               Conread position:153-395
               
               
               Cow position:chr3:53095142-53094896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):21, 149

               
               
               Conread position:154-504
               
               
               Cow position:chr3:74206011-74205664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:240
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):174, 66

               
               
               Conread position:157-449
               
               
               Cow position:chr3:57760300-57760588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:210
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):191, 142

               
               
               Conread position:157-480
               
               
               Cow position:chr3:50347772-50348074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:226
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):86, 15

               
               
               Conread position:159-402
               
               
               Cow position:chr3:46226255-46226498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:177
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):87, 9

               
               
               Conread position:159-507
               
               
               Cow position:chr3:61894370-61894017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:238
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):43, 102

               
               
               Conread position:159-507
               
               
               Cow position:chr3:67520372-67520010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:245
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):68, 32

               
               
               Conread position:161-330
               
               
               Cow position:chr3:12576498-12576328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:127
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):85, 37

               
               
               Conread position:161-390
               
               
               Cow position:chr3:70631824-70632051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):142, 58

               
               
               Conread position:161-432
               
               
               Cow position:chr3:66884135-66883872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:184
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):184, 128

               
               
               Conread position:161-432
               
               
               Cow position:chr3:78896455-78896720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:198
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):187, 43

               
               
               Conread position:161-434
               
               
               Cow position:chr3:15751917-15751638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 192

               
               
               Conread position:161-435
               
               
               Cow position:chr3:3637992-3638254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):234, 138

               
               
               Conread position:161-451
               
               
               Cow position:chr3:55319097-55318807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):52, 60

               
               
               Conread position:161-508
               
               
               Cow position:chr3:57634079-57634413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:253
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):153, 88

               
               
               Conread position:162-448
               
               
               Cow position:chr3:63269032-63269311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:204
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):186, 45

               
               
               Conread position:164-452
               
               
               Cow position:chr3:54506520-54506800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):186, 14

               
               
               Conread position:165-343
               
               
               Cow position:chr3:27212172-27212346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:129
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:165-448
               
               
               Cow position:chr3:67930372-67930097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):183, 53

               
               
               Conread position:165-449
               
               
               Cow position:chr3:46006217-46005932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:197
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):129, 152

               
               
               Conread position:166-439
               
               
               Cow position:chr3:53091311-53091567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:191
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):183, 53

               
               
               Conread position:166-507
               
               
               Cow position:chr3:55819558-55819915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:249
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:168-427
               
               
               Cow position:chr3:26981877-26982126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:191
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):54, 118

               
               
               Conread position:168-434
               
               
               Cow position:chr3:74502509-74502250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:196
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):54, 117

               
               
               Conread position:168-508
               
               
               Cow position:chr3:76922850-76922506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:243
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):228, 51

               
               
               Conread position:171-494
               
               
               Cow position:chr3:35278386-35278705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:215
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):83, 199

               
               
               Conread position:172-369
               
               
               Cow position:chr3:23037810-23037611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):53, 14

               
               
               Conread position:172-434
               
               
               Cow position:chr3:74079822-74079562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):173, 47

               
               
               Conread position:172-447
               
               
               Cow position:chr3:84597143-84596877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:207
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):170, 48

               
               
               Conread position:172-449
               
               
               Cow position:chr3:14598767-14599026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):225, 77

               
               
               Conread position:172-449
               
               
               Cow position:chr3:54374044-54373770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:190
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):23, 122

               
               
               Conread position:172-449
               
               
               Cow position:chr3:75853514-75853239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):84, 48

               
               
               Conread position:172-457
               
               
               Cow position:chr3:53318220-53318498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):176, 121

               
               
               Conread position:173-506
               
               
               Cow position:chr3:61322666-61322983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:231
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):172, 20

               
               
               Conread position:174-315
               
               
               Cow position:chr3:16891117-16891258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:106
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):128, 61

               
               
               Conread position:174-504
               
               
               Cow position:chr3:35153440-35153769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:239
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):174, 51

               
               
               Conread position:176-418
               
               
               Cow position:chr3:81359292-81359048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):39, 111

               
               
               Conread position:176-502
               
               
               Cow position:chr3:11920210-11919896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:224
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):140, 43

               
               
               Conread position:178-434
               
               
               Cow position:chr3:55109792-55109538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):171, 22

               
               
               Conread position:178-434
               
               
               Cow position:chr3:62046485-62046739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):167, 41

               
               
               Conread position:179-449
               
               
               Cow position:chr3:19792716-19792995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:202
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):115, 236

               
               
               Conread position:180-412
               
               
               Cow position:chr3:18144292-18144065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:161
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):148, 39

               
               
               Conread position:186-434
               
               
               Cow position:chr3:73820541-73820294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:179
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):19, 86

               
               
               Conread position:186-447
               
               
               Cow position:chr3:12978785-12978529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):159, 5

               
               
               Conread position:187-450
               
               
               Cow position:chr3:30222017-30222282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:194
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):38, 127

               
               
               Conread position:190-508
               
               
               Cow position:chr3:58765242-58764919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 29

               
               
               Conread position:192-389
               
               
               Cow position:chr3:15992551-15992747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:155
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):157, 26

               
               
               Conread position:192-448
               
               
               Cow position:chr3:48810800-48810556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:194
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):157, 28

               
               
               Conread position:192-448
               
               
               Cow position:chr3:54100886-54100637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):13, 105

               
               
               Conread position:192-449
               
               
               Cow position:chr3:23920593-23920339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):156, 98

               
               
               Conread position:192-449
               
               
               Cow position:chr3:59884236-59883979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:186
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):127, 107

               
               
               Conread position:192-508
               
               
               Cow position:chr3:4036240-4035941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):69, 28

               
               
               Conread position:192-508
               
               
               Cow position:chr3:24872552-24872859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:223
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):203, 28

               
               
               Conread position:194-507
               
               
               Cow position:chr3:15153531-15153854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:235
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):155, 26

               
               
               Conread position:195-395
               
               
               Cow position:chr3:2851055-2850863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:150
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):38, 55

               
               
               Conread position:195-508
               
               
               Cow position:chr3:73742015-73741721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:232
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):154, 25

               
               
               Conread position:196-447
               
               
               Cow position:chr3:79645603-79645342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:186
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):26, 105

               
               
               Conread position:196-508
               
               
               Cow position:chr3:58973144-58973443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):153, 24

               
               
               Conread position:197-448
               
               
               Cow position:chr3:77581950-77582195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:180
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):200, 95

               
               
               Conread position:198-424
               
               
               Cow position:chr3:34871411-34871630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):150, 15

               
               
               Conread position:198-449
               
               
               Cow position:chr3:76268139-76267885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:182
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):31, 111

               
               
               Conread position:199-343
               
               
               Cow position:chr3:27247346-27247207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:113
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:200-434
               
               
               Cow position:chr3:24935215-24935440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:173
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):148, 18

               
               
               Conread position:201-427
               
               
               Cow position:chr3:19793747-19793523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:162
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):16, 85

               
               
               Conread position:201-449
               
               
               Cow position:chr3:45667507-45667255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):20, 97

               
               
               Conread position:202-507
               
               
               Cow position:chr3:46541981-46541685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:217
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):147, 17

               
               
               Conread position:203-507
               
               
               Cow position:chr3:70334117-70333803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:221
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):130, 99

               
               
               Conread position:203-508
               
               
               Cow position:chr3:51492629-51492932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:212
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):40, 21

               
               
               Conread position:203-508
               
               
               Cow position:chr3:55177905-55177584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:206-434
               
               
               Cow position:chr3:79196610-79196834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:159
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):143, 13

               
               
               Conread position:206-508
               
               
               Cow position:chr3:22221170-22221493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:230
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):96, 34

               
               
               Conread position:209-505
               
               
               Cow position:chr3:58527244-58527541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:213
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):27, 92

               
               
               Conread position:210-395
               
               
               Cow position:chr3:43726931-43727114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):138, 33

               
               
               Conread position:212-448
               
               
               Cow position:chr3:1785385-1785156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:162
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):136, 7

               
               
               Conread position:213-448
               
               
               Cow position:chr3:35621159-35621390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:163
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):184, 81

               
               
               Conread position:214-426
               
               
               Cow position:chr3:1517656-1517445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):37, 69

               
               
               Conread position:214-442
               
               
               Cow position:chr3:71238331-71238553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):100, 80

               
               
               Conread position:214-447
               
               
               Cow position:chr3:21015104-21014868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):17, 78

               
               
               Conread position:216-448
               
               
               Cow position:chr3:36671919-36671684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):36, 85

               
               
               Conread position:219-449
               
               
               Cow position:chr3:17058679-17058456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):10, 78

               
               
               Conread position:219-508
               
               
               Cow position:chr3:74846848-74846558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 52

               
               
               Conread position:220-449
               
               
               Cow position:chr3:56678489-56678260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):125, 10

               
               
               Conread position:220-505
               
               
               Cow position:chr3:61116994-61116707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 104

               
               
               Conread position:221-508
               
               
               Cow position:chr3:20993676-20993962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):128, 57

               
               
               Conread position:222-507
               
               
               Cow position:chr3:3037065-3036775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 97

               
               
               Conread position:224-432
               
               
               Cow position:chr3:84175958-84175750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:159
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):124, 74

               
               
               Conread position:224-450
               
               
               Cow position:chr3:22509894-22510116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:158
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):124, 67

               
               
               Conread position:224-475
               
               
               Cow position:chr3:32457068-32457309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):124, 75

               
               
               Conread position:224-508
               
               
               Cow position:chr3:60389635-60389919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:211
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):121, 56

               
               
               Conread position:226-508
               
               
               Cow position:chr3:15221648-15221370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:201
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):90, 23

               
               
               Conread position:227-451
               
               
               Cow position:chr3:76155858-76156079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):171, 60

               
               
               Conread position:230-504
               
               
               Cow position:chr3:34675597-34675867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:191
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):119, 10

               
               
               Conread position:231-508
               
               
               Cow position:chr3:14506042-14505766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:193
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):13, 86

               
               
               Conread position:237-448
               
               
               Cow position:chr3:73298967-73299167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:154
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):112, 62

               
               
               Conread position:239-504
               
               
               Cow position:chr3:18214258-18213994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):110, 14

               
               
               Conread position:240-449
               
               
               Cow position:chr3:72504015-72503806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):26, 30

               
               
               Conread position:242-448
               
               
               Cow position:chr3:55094349-55094141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):31, 55

               
               
               Conread position:242-448
               
               
               Cow position:chr3:58318068-58317859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:242-508
               
               
               Cow position:chr3:3649332-3649072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:195
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):154, 56

               
               
               Conread position:243-449
               
               
               Cow position:chr3:15443843-15443639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:158
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):105, 59

               
               
               Conread position:243-450
               
               
               Cow position:chr3:17235323-17235126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):102, 56

               
               
               Conread position:243-508
               
               
               Cow position:chr3:58292007-58291744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):18, 74

               
               
               Conread position:244-508
               
               
               Cow position:chr3:15951024-15950750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):27, 38

               
               
               Conread position:245-421
               
               
               Cow position:chr3:12670726-12670553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):104, 9

               
               
               Conread position:245-449
               
               
               Cow position:chr3:60264828-60264626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):104, 9

               
               
               Conread position:248-449
               
               
               Cow position:chr3:83988423-83988622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):101, 13

               
               
               Conread position:249-415
               
               
               Cow position:chr3:45897498-45897664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):96, 63

               
               
               Conread position:249-415
               
               
               Cow position:chr3:45972558-45972392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):96, 63

               
               
               Conread position:249-508
               
               
               Cow position:chr3:58448170-58447919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):30, 53

               
               
               Conread position:250-447
               
               
               Cow position:chr3:33693711-33693907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):35, 58

               
               
               Conread position:250-448
               
               
               Cow position:chr3:27727936-27727742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:147
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):98, 27

               
               
               Conread position:250-449
               
               
               Cow position:chr3:55983988-55984188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:143
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):95, 140

               
               
               Conread position:250-449
               
               
               Cow position:chr3:65019972-65019777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):98, 52

               
               
               Conread position:251-434
               
               
               Cow position:chr3:3316918-3316741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:137
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):98, 42

               
               
               Conread position:253-448
               
               
               Cow position:chr3:28238675-28238483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):96, 68

               
               
               Conread position:253-449
               
               
               Cow position:chr3:75238354-75238547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:144
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):95, 46

               
               
               Conread position:255-469
               
               
               Cow position:chr3:35874069-35873863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:166
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):90, 51

               
               
               Conread position:256-508
               
               
               Cow position:chr3:3818694-3818931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:179
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:257-434
               
               
               Cow position:chr3:81277571-81277393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:135
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):18, 49

               
               
               Conread position:257-448
               
               
               Cow position:chr3:84250643-84250455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):91, 11

               
               
               Conread position:258-508
               
               
               Cow position:chr3:56483415-56483668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 19

               
               
               Conread position:259-447
               
               
               Cow position:chr3:47753126-47753314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):90, 34

               
               
               Conread position:259-504
               
               
               Cow position:chr3:39911154-39910915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:169
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):90, 42

               
               
               Conread position:261-502
               
               
               Cow position:chr3:26089099-26088854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):54, 41

               
               
               Conread position:262-506
               
               
               Cow position:chr3:9074440-9074199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:183
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):56, 38

               
               
               Conread position:268-488
               
               
               Cow position:chr3:53704055-53703836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:167
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):60, 34

               
               
               Conread position:268-508
               
               
               Cow position:chr3:39873786-39873541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:181
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):18, 34

               
               
               Conread position:271-449
               
               
               Cow position:chr3:74900724-74900553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):77, 27

               
               
               Conread position:274-507
               
               
               Cow position:chr3:48271248-48271473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):71, 49

               
               
               Conread position:275-449
               
               
               Cow position:chr3:48478114-48477946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:275-506
               
               
               Cow position:chr3:73436524-73436294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):74, 38

               
               
               Conread position:275-508
               
               
               Cow position:chr3:41550459-41550227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:186
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 27

               
               
               Conread position:277-449
               
               
               Cow position:chr3:27976606-27976434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):71, 25

               
               
               Conread position:283-473
               
               
               Cow position:chr3:61215458-61215278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:141
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):115, 19

               
               
               Conread position:285-486
               
               
               Cow position:chr3:61467264-61467063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):64, 14

               
               
               Conread position:288-491
               
               
               Cow position:chr3:11715925-11716131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):56, 35

               
               
               Conread position:296-447
               
               
               Cow position:chr3:11292311-11292160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):52, 24

               
               
               Conread position:298-449
               
               
               Cow position:chr3:81234325-81234479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:299-452
               
               
               Cow position:chr3:64373216-64373063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:121
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):49, 17

               
               
               Conread position:300-508
               
               
               Cow position:chr3:20841934-20841712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:160
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:301-508
               
               
               Cow position:chr3:5601226-5601020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):39, 151

               
               
               Conread position:302-434
               
               
               Cow position:chr3:36913991-36914125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:104
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:302-449
               
               
               Cow position:chr3:56704381-56704231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:303-508
               
               
               Cow position:chr3:40100775-40100562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:305-508
               
               
               Cow position:chr3:17634098-17633897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:144
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):11, 19

               
               
               Conread position:306-443
               
               
               Cow position:chr3:11606259-11606404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:307-449
               
               
               Cow position:chr3:69650943-69650799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:308-448
               
               
               Cow position:chr3:21997841-21997699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:107
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:308-508
               
               
               Cow position:chr3:909685-909482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):41, 12

               
               
               Conread position:308-508
               
               
               Cow position:chr3:1004593-1004783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:146
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):91, 15

               
               
               Conread position:311-452
               
               
               Cow position:chr3:21641938-21642080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:107
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):37, 61

               
               
               Conread position:311-508
               
               
               Cow position:chr3:29828198-29828000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:145
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):38, 142

               
               
               Conread position:311-508
               
               
               Cow position:chr3:51349773-51349965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:142
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):38, 142

               
               
               Conread position:312-469
               
               
               Cow position:chr3:24300314-24300470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):37, 21

               
               
               Conread position:313-508
               
               
               Cow position:chr3:63448967-63449150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:315-507
               
               
               Cow position:chr3:3698613-3698810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):34, 87

               
               
               Conread position:316-506
               
               
               Cow position:chr3:25076210-25076020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):34, 7

               
               
               Conread position:321-506
               
               
               Cow position:chr3:10732850-10733043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:327-449
               
               
               Cow position:chr3:11705217-11705341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:97
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:328-508
               
               
               Cow position:chr3:57846963-57846784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):20, 76

               
               
               Conread position:330-452
               
               
               Cow position:chr3:8814144-8814020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:101
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):18, 114

               
               
               Conread position:333-508
               
               
               Cow position:chr3:54557648-54557833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):66, 15

               
               
               Conread position:346-508
               
               
               Cow position:chr3:27246973-27246800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:129
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:346-508
               
               
               Cow position:chr3:50350983-50350811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):44, 94

               
               
               Conread position:347-508
               
               
               Cow position:chr3:6900902-6901063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:121
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):50, 109

               
               
               Conread position:349-508
               
               
               Cow position:chr3:44093379-44093216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):48, 154

               
               
               Conread position:352-508
               
               
               Cow position:chr3:10173175-10173015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:118
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:355-508
               
               
               Cow position:chr3:68086114-68085966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:1-440
               
               
               Cow position:chr4:23494588-23495018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 223

               
               
               Conread position:5-283
               
               
               Cow position:chr4:8439779-8439495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):112, 231

               
               
               Conread position:5-399
               
               
               Cow position:chr4:44734239-44734635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:243
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):104, 324

               
               
               Conread position:5-449
               
               
               Cow position:chr4:570460-570899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 157

               
               
               Conread position:9-423
               
               
               Cow position:chr4:62618173-62618597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:288
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):69, 206

               
               
               Conread position:11-403
               
               
               Cow position:chr4:39231853-39231460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 195

               
               
               Conread position:11-434
               
               
               Cow position:chr4:38952229-38952645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):100, 184

               
               
               Conread position:11-508
               
               
               Cow position:chr4:45918703-45919198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:356
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):100, 53

               
               
               Conread position:12-341
               
               
               Cow position:chr4:46861905-46861598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:221
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):237, 67

               
               
               Conread position:12-365
               
               
               Cow position:chr4:58512906-58512539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:248
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):58, 143

               
               
               Conread position:12-508
               
               
               Cow position:chr4:17379145-17378681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:500
               
               
               Alignm identity:352
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 58

               
               
               Conread position:12-508
               
               
               Cow position:chr4:58707510-58707010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):196, 12

               
               
               Conread position:14-311
               
               
               Cow position:chr4:59833608-59833917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:229
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):34, 118

               
               
               Conread position:15-323
               
               
               Cow position:chr4:49992761-49993052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:221
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):12, 48

               
               
               Conread position:15-415
               
               
               Cow position:chr4:23853879-23854253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 15

               
               
               Conread position:15-434
               
               
               Cow position:chr4:68764191-68764607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 118

               
               
               Conread position:15-446
               
               
               Cow position:chr4:65650447-65650030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):100, 49

               
               
               Conread position:15-508
               
               
               Cow position:chr4:65406683-65406212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:500
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):155, 38

               
               
               Conread position:16-261
               
               
               Cow position:chr4:2671590-2671351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):98, 38

               
               
               Conread position:16-284
               
               
               Cow position:chr4:21064326-21064061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 41

               
               
               Conread position:16-294
               
               
               Cow position:chr4:23558161-23558446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:16-297
               
               
               Cow position:chr4:23565189-23565474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:193
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):83, 54

               
               
               Conread position:16-297
               
               
               Cow position:chr4:46708852-46708568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:208
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):92, 45

               
               
               Conread position:16-300
               
               
               Cow position:chr4:43543059-43542776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):89, 210

               
               
               Conread position:16-300
               
               
               Cow position:chr4:57555641-57555931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:16-303
               
               
               Cow position:chr4:14159449-14159163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:205
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):93, 155

               
               
               Conread position:16-309
               
               
               Cow position:chr4:18489718-18489415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:217
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:16-315
               
               
               Cow position:chr4:23570472-23570778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):82, 290

               
               
               Conread position:16-329
               
               
               Cow position:chr4:65168330-65168017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):160, 49

               
               
               Conread position:16-346
               
               
               Cow position:chr4:48137589-48137914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 78

               
               
               Conread position:16-349
               
               
               Cow position:chr4:19558402-19558727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:233
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):63, 29

               
               
               Conread position:16-352
               
               
               Cow position:chr4:43370175-43369837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 154

               
               
               Conread position:16-358
               
               
               Cow position:chr4:22850045-22849701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:236
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):18, 149

               
               
               Conread position:16-363
               
               
               Cow position:chr4:62654009-62653660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:225
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):101, 295

               
               
               Conread position:16-366
               
               
               Cow position:chr4:11099989-11099641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):322, 8

               
               
               Conread position:16-366
               
               
               Cow position:chr4:22051793-22051448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:245
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):33, 58

               
               
               Conread position:16-366
               
               
               Cow position:chr4:61972800-61972440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:253
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):84, 63

               
               
               Conread position:16-367
               
               
               Cow position:chr4:9358040-9358383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:233
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):157, 94

               
               
               Conread position:16-367
               
               
               Cow position:chr4:22086305-22085952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:231
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):101, 221

               
               
               Conread position:16-373
               
               
               Cow position:chr4:6862572-6862210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:232
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):46, 38

               
               
               Conread position:16-373
               
               
               Cow position:chr4:8678435-8678794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:230
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):79, 277

               
               
               Conread position:16-373
               
               
               Cow position:chr4:15500827-15500468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:238
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):93, 221

               
               
               Conread position:16-373
               
               
               Cow position:chr4:30306953-30306596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:238
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):46, 38

               
               
               Conread position:16-373
               
               
               Cow position:chr4:37181229-37180870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:231
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):101, 289

               
               
               Conread position:16-373
               
               
               Cow position:chr4:62950877-62951235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:232
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):43, 38

               
               
               Conread position:16-389
               
               
               Cow position:chr4:10016907-10016558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:246
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):173, 45

               
               
               Conread position:16-396
               
               
               Cow position:chr4:44956528-44956129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:275
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):78, 303

               
               
               Conread position:16-397
               
               
               Cow position:chr4:23563675-23564069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:249
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):83, 10

               
               
               Conread position:16-399
               
               
               Cow position:chr4:46710973-46710589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:246
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):93, 137

               
               
               Conread position:16-400
               
               
               Cow position:chr4:28147597-28147212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:250
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):101, 261

               
               
               Conread position:16-412
               
               
               Cow position:chr4:47730546-47730928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):329, 38

               
               
               Conread position:16-415
               
               
               Cow position:chr4:12903492-12903894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:271
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):53, 44

               
               
               Conread position:16-422
               
               
               Cow position:chr4:16602378-16601983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 120

               
               
               Conread position:16-423
               
               
               Cow position:chr4:30574131-30574549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 149

               
               
               Conread position:16-426
               
               
               Cow position:chr4:10916162-10915751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):156, 98

               
               
               Conread position:16-426
               
               
               Cow position:chr4:22073636-22073240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:276
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):44, 124

               
               
               Conread position:16-426
               
               
               Cow position:chr4:34209701-34210117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 47

               
               
               Conread position:16-435
               
               
               Cow position:chr4:13693994-13693579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:282
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):158, 21

               
               
               Conread position:16-443
               
               
               Cow position:chr4:27755630-27755203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 54

               
               
               Conread position:16-447
               
               
               Cow position:chr4:12591535-12591109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 14

               
               
               Conread position:16-448
               
               
               Cow position:chr4:509223-508803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 149

               
               
               Conread position:16-448
               
               
               Cow position:chr4:10731895-10732329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 8

               
               
               Conread position:16-448
               
               
               Cow position:chr4:19584379-19584809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 300

               
               
               Conread position:16-448
               
               
               Cow position:chr4:22101590-22101159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:294
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):85, 29

               
               
               Conread position:16-448
               
               
               Cow position:chr4:26400632-26401061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 286

               
               
               Conread position:16-449
               
               
               Cow position:chr4:15904776-15905209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 49

               
               
               Conread position:16-449
               
               
               Cow position:chr4:22138559-22138114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 24

               
               
               Conread position:16-449
               
               
               Cow position:chr4:23526366-23526800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:296
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):61, 178

               
               
               Conread position:16-449
               
               
               Cow position:chr4:25197822-25197387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 270

               
               
               Conread position:16-449
               
               
               Cow position:chr4:25879072-25879497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 45

               
               
               Conread position:16-449
               
               
               Cow position:chr4:27276868-27276437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 174

               
               
               Conread position:16-449
               
               
               Cow position:chr4:28836207-28836641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):158, 71

               
               
               Conread position:16-449
               
               
               Cow position:chr4:29805705-29805267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:304
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):108, 71

               
               
               Conread position:16-449
               
               
               Cow position:chr4:31136428-31136861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:292
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):46, 162

               
               
               Conread position:16-449
               
               
               Cow position:chr4:32260172-32259736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 136

               
               
               Conread position:16-449
               
               
               Cow position:chr4:33433581-33433151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 54

               
               
               Conread position:16-449
               
               
               Cow position:chr4:37703941-37704372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 132

               
               
               Conread position:16-449
               
               
               Cow position:chr4:40414956-40414521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 137

               
               
               Conread position:16-449
               
               
               Cow position:chr4:44782049-44782481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 147

               
               
               Conread position:16-449
               
               
               Cow position:chr4:54190783-54191196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):329, 14

               
               
               Conread position:16-449
               
               
               Cow position:chr4:58248086-58248508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 49

               
               
               Conread position:16-450
               
               
               Cow position:chr4:46477263-46476838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 49

               
               
               Conread position:16-451
               
               
               Cow position:chr4:3850232-3850660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 34

               
               
               Conread position:16-451
               
               
               Cow position:chr4:36893031-36893468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 45

               
               
               Conread position:16-455
               
               
               Cow position:chr4:13668938-13668509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:299
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):95, 38

               
               
               Conread position:16-481
               
               
               Cow position:chr4:15623517-15624001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:490
               
               
               Alignm identity:359
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 94

               
               
               Conread position:16-482
               
               
               Cow position:chr4:1374069-1374497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:321
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):83, 54

               
               
               Conread position:16-505
               
               
               Cow position:chr4:2609917-2610382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:491
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):333, 29

               
               
               Conread position:16-505
               
               
               Cow position:chr4:23647168-23646690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:502
               
               
               Alignm identity:355
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 224

               
               
               Conread position:16-505
               
               
               Cow position:chr4:34166290-34165806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:500
               
               
               Alignm identity:329
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):286, 41

               
               
               Conread position:16-505
               
               
               Cow position:chr4:60897598-60897113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:501
               
               
               Alignm identity:351
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 172

               
               
               Conread position:16-508
               
               
               Cow position:chr4:12697319-12697794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:499
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 188

               
               
               Conread position:16-508
               
               
               Cow position:chr4:21064708-21065208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:361
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 195

               
               
               Conread position:16-508
               
               
               Cow position:chr4:23311585-23311105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:502
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):170, 88

               
               
               Conread position:16-508
               
               
               Cow position:chr4:25972574-25973063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:498
               
               
               Alignm identity:354
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 108

               
               
               Conread position:16-508
               
               
               Cow position:chr4:28151206-28151693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:352
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):97, 25

               
               
               Conread position:16-508
               
               
               Cow position:chr4:31023121-31023632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:520
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 20

               
               
               Conread position:16-508
               
               
               Cow position:chr4:37915654-37915155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:355
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 80

               
               
               Conread position:16-508
               
               
               Cow position:chr4:44496061-44496545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:362
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 30

               
               
               Conread position:16-508
               
               
               Cow position:chr4:45235191-45234707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:373
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 146

               
               
               Conread position:16-508
               
               
               Cow position:chr4:52748799-52748279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:529
               
               
               Alignm identity:368
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 221

               
               
               Conread position:16-508
               
               
               Cow position:chr4:53125812-53126280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:500
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 139

               
               
               Conread position:16-508
               
               
               Cow position:chr4:61897857-61897369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:502
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 71

               
               
               Conread position:17-315
               
               
               Cow position:chr4:54501773-54501473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 205

               
               
               Conread position:17-349
               
               
               Cow position:chr4:53999844-53999504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:241
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):68, 188

               
               
               Conread position:17-373
               
               
               Cow position:chr4:6210368-6210725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:229
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):92, 248

               
               
               Conread position:17-375
               
               
               Cow position:chr4:11671130-11671484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 26

               
               
               Conread position:17-396
               
               
               Cow position:chr4:16339913-16339551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 44

               
               
               Conread position:17-422
               
               
               Cow position:chr4:16799512-16799106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 26

               
               
               Conread position:17-434
               
               
               Cow position:chr4:16239463-16239076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:282
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):31, 191

               
               
               Conread position:17-434
               
               
               Cow position:chr4:56240170-56239768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 50

               
               
               Conread position:17-438
               
               
               Cow position:chr4:28399728-28399317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 49

               
               
               Conread position:17-443
               
               
               Cow position:chr4:65919298-65919709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 58

               
               
               Conread position:17-447
               
               
               Cow position:chr4:20603-21017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):328, 24

               
               
               Conread position:17-448
               
               
               Cow position:chr4:7704633-7704219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 122

               
               
               Conread position:17-448
               
               
               Cow position:chr4:65816016-65815602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 138

               
               
               Conread position:17-449
               
               
               Cow position:chr4:1495725-1495302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 62

               
               
               Conread position:17-449
               
               
               Cow position:chr4:41301324-41300891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 215

               
               
               Conread position:17-485
               
               
               Cow position:chr4:19313681-19314152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 289

               
               
               Conread position:17-485
               
               
               Cow position:chr4:65842074-65841625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):221, 37

               
               
               Conread position:17-499
               
               
               Cow position:chr4:242902-243387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:490
               
               
               Alignm identity:351
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 63

               
               
               Conread position:17-507
               
               
               Cow position:chr4:27997359-27997858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:370
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 134

               
               
               Conread position:17-508
               
               
               Cow position:chr4:22528711-22528223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:498
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 204

               
               
               Conread position:17-508
               
               
               Cow position:chr4:44665693-44665207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:502
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 210

               
               
               Conread position:18-295
               
               
               Cow position:chr4:23060330-23060041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:18-302
               
               
               Cow position:chr4:22744006-22744281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:203
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):84, 36

               
               
               Conread position:18-309
               
               
               Cow position:chr4:19561372-19561651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:214
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):91, 71

               
               
               Conread position:18-309
               
               
               Cow position:chr4:68076851-68076560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:194
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):91, 137

               
               
               Conread position:18-366
               
               
               Cow position:chr4:13877876-13878204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:248
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):171, 50

               
               
               Conread position:18-411
               
               
               Cow position:chr4:28377968-28377597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 32

               
               
               Conread position:18-427
               
               
               Cow position:chr4:10905780-10905385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 55

               
               
               Conread position:18-435
               
               
               Cow position:chr4:30974014-30974426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 212

               
               
               Conread position:18-447
               
               
               Cow position:chr4:12003900-12004319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 159

               
               
               Conread position:18-475
               
               
               Cow position:chr4:9815672-9815216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 43

               
               
               Conread position:18-508
               
               
               Cow position:chr4:10992522-10992036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:499
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):156, 47

               
               
               Conread position:18-508
               
               
               Cow position:chr4:37935604-37935119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:499
               
               
               Alignm identity:359
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 172

               
               
               Conread position:19-439
               
               
               Cow position:chr4:62772259-62771822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 222

               
               
               Conread position:20-449
               
               
               Cow position:chr4:45738800-45738368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 41

               
               
               Conread position:20-450
               
               
               Cow position:chr4:66256365-66256794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:298
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):78, 45

               
               
               Conread position:20-508
               
               
               Cow position:chr4:12560703-12561202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:517
               
               
               Alignm identity:366
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 160

               
               
               Conread position:21-449
               
               
               Cow position:chr4:22236798-22236375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 150

               
               
               Conread position:22-417
               
               
               Cow position:chr4:19007721-19008121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:276
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):22, 55

               
               
               Conread position:26-449
               
               
               Cow position:chr4:54804726-54804314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:285
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):189, 55

               
               
               Conread position:27-449
               
               
               Cow position:chr4:19434946-19435362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 81

               
               
               Conread position:29-448
               
               
               Cow position:chr4:34310767-34310354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:260
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):79, 264

               
               
               Conread position:30-379
               
               
               Cow position:chr4:60371143-60370790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:247
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):73, 31

               
               
               Conread position:30-441
               
               
               Cow position:chr4:51850884-51851301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 253

               
               
               Conread position:30-508
               
               
               Cow position:chr4:6443385-6442923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:317
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):140, 32

               
               
               Conread position:32-449
               
               
               Cow position:chr4:44839194-44838788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 178

               
               
               Conread position:34-338
               
               
               Cow position:chr4:61215305-61215001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:215
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):77, 129

               
               
               Conread position:34-369
               
               
               Cow position:chr4:53545722-53546050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:235
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):75, 140

               
               
               Conread position:34-449
               
               
               Cow position:chr4:45662807-45662406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 128

               
               
               Conread position:34-508
               
               
               Cow position:chr4:961969-961482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:492
               
               
               Alignm identity:356
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 31

               
               
               Conread position:36-408
               
               
               Cow position:chr4:62317133-62317511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:254
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):79, 231

               
               
               Conread position:36-447
               
               
               Cow position:chr4:36730885-36731295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 190

               
               
               Conread position:37-286
               
               
               Cow position:chr4:46668269-46668513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:173
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):72, 24

               
               
               Conread position:37-365
               
               
               Cow position:chr4:49424540-49424848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:223
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):72, 24

               
               
               Conread position:38-461
               
               
               Cow position:chr4:26373971-26373557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:295
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):71, 23

               
               
               Conread position:38-485
               
               
               Cow position:chr4:53752214-53752663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):189, 56

               
               
               Conread position:40-508
               
               
               Cow position:chr4:58834706-58834234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:355
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 14

               
               
               Conread position:41-396
               
               
               Cow position:chr4:637698-638053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:233
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):76, 64

               
               
               Conread position:46-338
               
               
               Cow position:chr4:65891697-65891986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:196
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):65, 118

               
               
               Conread position:46-383
               
               
               Cow position:chr4:37828132-37827809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 112

               
               
               Conread position:52-507
               
               
               Cow position:chr4:54937597-54938062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 158

               
               
               Conread position:54-434
               
               
               Cow position:chr4:21874539-21874894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:277
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):25, 77

               
               
               Conread position:54-449
               
               
               Cow position:chr4:39128244-39128644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 19

               
               
               Conread position:54-449
               
               
               Cow position:chr4:45775628-45775231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 133

               
               
               Conread position:57-448
               
               
               Cow position:chr4:18095960-18095568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):116, 53

               
               
               Conread position:57-469
               
               
               Cow position:chr4:21392088-21391688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 79

               
               
               Conread position:58-397
               
               
               Cow position:chr4:2893741-2894085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:235
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):51, 266

               
               
               Conread position:63-397
               
               
               Cow position:chr4:51866714-51867046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:243
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):15, 139

               
               
               Conread position:63-506
               
               
               Cow position:chr4:8801223-8801670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 114

               
               
               Conread position:64-396
               
               
               Cow position:chr4:29237427-29237117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:240
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):45, 63

               
               
               Conread position:64-449
               
               
               Cow position:chr4:19322356-19321971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 116

               
               
               Conread position:65-395
               
               
               Cow position:chr4:46529260-46528934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:218
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):34, 99

               
               
               Conread position:65-423
               
               
               Cow position:chr4:13406435-13406789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 15

               
               
               Conread position:65-469
               
               
               Cow position:chr4:44451254-44451646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 142

               
               
               Conread position:65-508
               
               
               Cow position:chr4:4084722-4084274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 132

               
               
               Conread position:65-508
               
               
               Cow position:chr4:56570529-56570974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 237

               
               
               Conread position:66-343
               
               
               Cow position:chr4:52167118-52166852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:66-365
               
               
               Cow position:chr4:1034795-1035072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:215
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):108, 39

               
               
               Conread position:66-408
               
               
               Cow position:chr4:33623441-33623779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:238
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):11, 171

               
               
               Conread position:66-447
               
               
               Cow position:chr4:5461128-5460757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):230, 38

               
               
               Conread position:66-506
               
               
               Cow position:chr4:21365139-21365565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):171, 39

               
               
               Conread position:67-316
               
               
               Cow position:chr4:62411600-62411853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:190
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):32, 43

               
               
               Conread position:67-434
               
               
               Cow position:chr4:33395962-33395606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):282, 102

               
               
               Conread position:68-449
               
               
               Cow position:chr4:17052873-17052486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:267
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):9, 105

               
               
               Conread position:70-290
               
               
               Cow position:chr4:7213856-7213632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):45, 143

               
               
               Conread position:70-343
               
               
               Cow position:chr4:16637869-16637605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:189
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):37, 131

               
               
               Conread position:70-408
               
               
               Cow position:chr4:58261424-58261085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 155

               
               
               Conread position:70-448
               
               
               Cow position:chr4:59785045-59785428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 214

               
               
               Conread position:70-449
               
               
               Cow position:chr4:27529842-27530225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 155

               
               
               Conread position:70-496
               
               
               Cow position:chr4:51122786-51123220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 89

               
               
               Conread position:70-498
               
               
               Cow position:chr4:11021922-11021506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 97

               
               
               Conread position:70-504
               
               
               Cow position:chr4:22115335-22115766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 229

               
               
               Conread position:70-508
               
               
               Cow position:chr4:4321277-4320810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 158

               
               
               Conread position:71-294
               
               
               Cow position:chr4:67392700-67392913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):40, 83

               
               
               Conread position:71-309
               
               
               Cow position:chr4:57931641-57931883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:167
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):40, 89

               
               
               Conread position:71-412
               
               
               Cow position:chr4:54930686-54930352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:245
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):38, 59

               
               
               Conread position:71-415
               
               
               Cow position:chr4:51739973-51739644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 95

               
               
               Conread position:71-427
               
               
               Cow position:chr4:44612733-44613090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 227

               
               
               Conread position:71-430
               
               
               Cow position:chr4:20139789-20139429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:246
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):40, 116

               
               
               Conread position:71-447
               
               
               Cow position:chr4:46591392-46591772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 38

               
               
               Conread position:71-449
               
               
               Cow position:chr4:46456317-46455962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:266
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):40, 47

               
               
               Conread position:71-451
               
               
               Cow position:chr4:19744619-19744984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:266
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):116, 42

               
               
               Conread position:71-482
               
               
               Cow position:chr4:25889103-25888686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 181

               
               
               Conread position:72-293
               
               
               Cow position:chr4:62570546-62570771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):37, 142

               
               
               Conread position:72-423
               
               
               Cow position:chr4:33030292-33030630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):273, 40

               
               
               Conread position:73-397
               
               
               Cow position:chr4:25359337-25359652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:235
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):47, 228

               
               
               Conread position:73-404
               
               
               Cow position:chr4:46550116-46550442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:232
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):41, 152

               
               
               Conread position:73-412
               
               
               Cow position:chr4:63119499-63119163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 98

               
               
               Conread position:73-434
               
               
               Cow position:chr4:47348564-47348918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 58

               
               
               Conread position:73-448
               
               
               Cow position:chr4:51783912-51784285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 116

               
               
               Conread position:74-294
               
               
               Cow position:chr4:54667958-54667734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:75-508
               
               
               Cow position:chr4:27372123-27371700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:289
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):13, 31

               
               
               Conread position:76-405
               
               
               Cow position:chr4:63349740-63349422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:237
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):34, 60

               
               
               Conread position:76-434
               
               
               Cow position:chr4:55395503-55395853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 93

               
               
               Conread position:76-448
               
               
               Cow position:chr4:32725959-32726330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 149

               
               
               Conread position:76-461
               
               
               Cow position:chr4:18439838-18439451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 120

               
               
               Conread position:76-505
               
               
               Cow position:chr4:40823380-40822950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 146

               
               
               Conread position:76-508
               
               
               Cow position:chr4:35471067-35471482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:296
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):29, 104

               
               
               Conread position:77-361
               
               
               Cow position:chr4:26746220-26746501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):26, 113

               
               
               Conread position:77-368
               
               
               Cow position:chr4:17660469-17660162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:213
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):32, 220

               
               
               Conread position:77-432
               
               
               Cow position:chr4:8769846-8770187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:249
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):34, 75

               
               
               Conread position:77-432
               
               
               Cow position:chr4:37691572-37691223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:239
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):32, 78

               
               
               Conread position:77-448
               
               
               Cow position:chr4:46060682-46061047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:260
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):22, 82

               
               
               Conread position:77-449
               
               
               Cow position:chr4:35981725-35982105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 148

               
               
               Conread position:77-452
               
               
               Cow position:chr4:19699835-19700205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:264
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):37, 151

               
               
               Conread position:77-504
               
               
               Cow position:chr4:5797703-5798125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 150

               
               
               Conread position:77-506
               
               
               Cow position:chr4:31348458-31348019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 151

               
               
               Conread position:77-508
               
               
               Cow position:chr4:22249707-22249285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):114, 38

               
               
               Conread position:77-508
               
               
               Cow position:chr4:46597119-46597537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:302
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):34, 77

               
               
               Conread position:78-447
               
               
               Cow position:chr4:23445314-23444942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 52

               
               
               Conread position:78-448
               
               
               Cow position:chr4:66548016-66547662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 69

               
               
               Conread position:78-471
               
               
               Cow position:chr4:36813109-36813506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 145

               
               
               Conread position:78-473
               
               
               Cow position:chr4:54146738-54146337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 133

               
               
               Conread position:78-502
               
               
               Cow position:chr4:68795568-68795138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:288
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):33, 250

               
               
               Conread position:79-338
               
               
               Cow position:chr4:43909490-43909739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:180
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):30, 76

               
               
               Conread position:79-422
               
               
               Cow position:chr4:22345277-22344942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 109

               
               
               Conread position:79-476
               
               
               Cow position:chr4:34630640-34631033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 88

               
               
               Conread position:79-507
               
               
               Cow position:chr4:35869953-35870367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 89

               
               
               Conread position:79-508
               
               
               Cow position:chr4:52225747-52226168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 147

               
               
               Conread position:80-313
               
               
               Cow position:chr4:26541470-26541710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):35, 228

               
               
               Conread position:80-448
               
               
               Cow position:chr4:1985388-1985753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:249
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):31, 81

               
               
               Conread position:80-449
               
               
               Cow position:chr4:63096336-63095967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:252
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):31, 59

               
               
               Conread position:81-366
               
               
               Cow position:chr4:62983813-62983530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:204
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):26, 143

               
               
               Conread position:81-411
               
               
               Cow position:chr4:13435482-13435806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:228
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):26, 143

               
               
               Conread position:81-485
               
               
               Cow position:chr4:6208211-6208602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):264, 31

               
               
               Conread position:81-508
               
               
               Cow position:chr4:21371140-21371545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):267, 24

               
               
               Conread position:82-508
               
               
               Cow position:chr4:24187877-24187437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:306
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):27, 144

               
               
               Conread position:83-293
               
               
               Cow position:chr4:12260040-12259828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:156
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):22, 174

               
               
               Conread position:84-356
               
               
               Cow position:chr4:33357674-33357949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):25, 60

               
               
               Conread position:84-432
               
               
               Cow position:chr4:59008626-59008265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 181

               
               
               Conread position:84-448
               
               
               Cow position:chr4:45367479-45367845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 25

               
               
               Conread position:89-388
               
               
               Cow position:chr4:24688597-24688300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:203
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):85, 19

               
               
               Conread position:89-441
               
               
               Cow position:chr4:49089542-49089875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:249
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):20, 85

               
               
               Conread position:89-508
               
               
               Cow position:chr4:12676561-12676978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:298
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):22, 65

               
               
               Conread position:90-506
               
               
               Cow position:chr4:2121647-2121236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:283
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):25, 134

               
               
               Conread position:90-508
               
               
               Cow position:chr4:36945442-36945029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 135

               
               
               Conread position:91-311
               
               
               Cow position:chr4:53447916-53447695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):18, 97

               
               
               Conread position:93-350
               
               
               Cow position:chr4:46370562-46370832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:94-433
               
               
               Cow position:chr4:37502574-37502903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:225
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):15, 80

               
               
               Conread position:94-505
               
               
               Cow position:chr4:21073392-21072993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):160, 16

               
               
               Conread position:94-508
               
               
               Cow position:chr4:9681058-9681474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 22

               
               
               Conread position:94-508
               
               
               Cow position:chr4:12127891-12127456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 139

               
               
               Conread position:95-449
               
               
               Cow position:chr4:657063-656702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:253
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):10, 80

               
               
               Conread position:95-487
               
               
               Cow position:chr4:22724881-22725233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:268
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):304, 13

               
               
               Conread position:95-505
               
               
               Cow position:chr4:41602603-41603003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 127

               
               
               Conread position:96-397
               
               
               Cow position:chr4:13255851-13256136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):252, 17

               
               
               Conread position:96-421
               
               
               Cow position:chr4:21233116-21232795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:238
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):13, 62

               
               
               Conread position:96-434
               
               
               Cow position:chr4:58881211-58880869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:239
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):15, 128

               
               
               Conread position:96-506
               
               
               Cow position:chr4:11897544-11897121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:284
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):13, 94

               
               
               Conread position:96-508
               
               
               Cow position:chr4:3440161-3440576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 126

               
               
               Conread position:96-508
               
               
               Cow position:chr4:29291277-29291689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 48

               
               
               Conread position:97-456
               
               
               Cow position:chr4:34383581-34383228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:260
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):12, 58

               
               
               Conread position:97-508
               
               
               Cow position:chr4:31004649-31004229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 90

               
               
               Conread position:98-292
               
               
               Cow position:chr4:41292222-41292029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:147
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):9, 126

               
               
               Conread position:98-410
               
               
               Cow position:chr4:14919757-14920057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):13, 60

               
               
               Conread position:98-434
               
               
               Cow position:chr4:42922085-42921768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:231
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):247, 10

               
               
               Conread position:98-439
               
               
               Cow position:chr4:54455586-54455246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 97

               
               
               Conread position:98-449
               
               
               Cow position:chr4:2601991-2602337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 12

               
               
               Conread position:98-508
               
               
               Cow position:chr4:3837037-3837451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 127

               
               
               Conread position:99-427
               
               
               Cow position:chr4:65431903-65432235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:244
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):15, 54

               
               
               Conread position:99-485
               
               
               Cow position:chr4:14550613-14550976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:273
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):250, 15

               
               
               Conread position:100-399
               
               
               Cow position:chr4:17474195-17474495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 78

               
               
               Conread position:101-357
               
               
               Cow position:chr4:27687684-27687941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:188
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):10, 196

               
               
               Conread position:105-373
               
               
               Cow position:chr4:43750046-43749784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:193
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):59, 112

               
               
               Conread position:110-342
               
               
               Cow position:chr4:63813531-63813314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):86, 62

               
               
               Conread position:110-358
               
               
               Cow position:chr4:65538637-65538402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:176
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):238, 43

               
               
               Conread position:110-449
               
               
               Cow position:chr4:13222405-13222080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:242
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):287, 96

               
               
               Conread position:110-499
               
               
               Cow position:chr4:22860935-22860553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):226, 58

               
               
               Conread position:113-320
               
               
               Cow position:chr4:23911815-23911601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):61, 19

               
               
               Conread position:113-362
               
               
               Cow position:chr4:9912504-9912749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):61, 18

               
               
               Conread position:113-448
               
               
               Cow position:chr4:21258990-21259318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 114

               
               
               Conread position:113-457
               
               
               Cow position:chr4:10999930-10999601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:237
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):235, 135

               
               
               Conread position:113-504
               
               
               Cow position:chr4:31172444-31172833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:270
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):54, 112

               
               
               Conread position:114-293
               
               
               Cow position:chr4:37465809-37465638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:114-397
               
               
               Cow position:chr4:34210940-34211222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:199
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):22, 29

               
               
               Conread position:115-411
               
               
               Cow position:chr4:44973418-44973703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):111, 49

               
               
               Conread position:117-439
               
               
               Cow position:chr4:5554015-5553700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:218
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):57, 107

               
               
               Conread position:117-449
               
               
               Cow position:chr4:16762954-16762619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:242
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):18, 14

               
               
               Conread position:122-508
               
               
               Cow position:chr4:39767128-39767514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 185

               
               
               Conread position:124-485
               
               
               Cow position:chr4:58858377-58858030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):225, 11

               
               
               Conread position:125-508
               
               
               Cow position:chr4:43740307-43740714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:267
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):100, 309

               
               
               Conread position:126-449
               
               
               Cow position:chr4:31506243-31505917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:225
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):176, 16

               
               
               Conread position:126-472
               
               
               Cow position:chr4:40623309-40622973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:243
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):136, 104

               
               
               Conread position:127-452
               
               
               Cow position:chr4:13941246-13941566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:235
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):25, 124

               
               
               Conread position:128-434
               
               
               Cow position:chr4:48321817-48322127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:227
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):88, 25

               
               
               Conread position:131-448
               
               
               Cow position:chr4:13284168-13284485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:214
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):43, 77

               
               
               Conread position:131-506
               
               
               Cow position:chr4:36075969-36075610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:246
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):11, 93

               
               
               Conread position:132-393
               
               
               Cow position:chr4:1354821-1354575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:185
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):147, 40

               
               
               Conread position:132-497
               
               
               Cow position:chr4:36929106-36929468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 92

               
               
               Conread position:133-440
               
               
               Cow position:chr4:51768906-51769201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):215, 109

               
               
               Conread position:134-447
               
               
               Cow position:chr4:16593878-16594187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):214, 85

               
               
               Conread position:134-449
               
               
               Cow position:chr4:30791759-30792075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:223
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):34, 144

               
               
               Conread position:140-448
               
               
               Cow position:chr4:13974171-13973864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:221
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):46, 88

               
               
               Conread position:145-290
               
               
               Cow position:chr4:6133777-6133922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):98, 75

               
               
               Conread position:145-397
               
               
               Cow position:chr4:15785001-15784755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:171
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):200, 6

               
               
               Conread position:146-358
               
               
               Cow position:chr4:33869467-33869670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:157
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):27, 123

               
               
               Conread position:146-447
               
               
               Cow position:chr4:13344353-13344643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:206
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):203, 79

               
               
               Conread position:156-397
               
               
               Cow position:chr4:2885727-2885486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):69, 46

               
               
               Conread position:156-463
               
               
               Cow position:chr4:32459044-32458738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):66, 5

               
               
               Conread position:156-505
               
               
               Cow position:chr4:50769951-50769605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 66

               
               
               Conread position:157-439
               
               
               Cow position:chr4:29106722-29107003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):59, 7

               
               
               Conread position:157-449
               
               
               Cow position:chr4:22713677-22713387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):17, 149

               
               
               Conread position:157-508
               
               
               Cow position:chr4:34369635-34369282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 65

               
               
               Conread position:158-508
               
               
               Cow position:chr4:23758619-23758966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:246
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):13, 66

               
               
               Conread position:160-434
               
               
               Cow position:chr4:26012217-26012492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:186
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):65, 33

               
               
               Conread position:161-408
               
               
               Cow position:chr4:33100995-33100744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:177
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):64, 99

               
               
               Conread position:161-449
               
               
               Cow position:chr4:17186531-17186244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:207
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):93, 58

               
               
               Conread position:164-364
               
               
               Cow position:chr4:54851295-54851097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):61, 128

               
               
               Conread position:164-451
               
               
               Cow position:chr4:20147010-20147292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:209
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):22, 50

               
               
               Conread position:165-440
               
               
               Cow position:chr4:45711195-45711461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):184, 55

               
               
               Conread position:165-449
               
               
               Cow position:chr4:19408178-19407891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 58

               
               
               Conread position:168-432
               
               
               Cow position:chr4:9925806-9925540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):18, 120

               
               
               Conread position:168-504
               
               
               Cow position:chr4:30671576-30671254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:227
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):107, 51

               
               
               Conread position:170-448
               
               
               Cow position:chr4:59377744-59378015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:208
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):12, 51

               
               
               Conread position:172-369
               
               
               Cow position:chr4:46720331-46720141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):56, 128

               
               
               Conread position:172-397
               
               
               Cow position:chr4:4843414-4843190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):57, 122

               
               
               Conread position:172-402
               
               
               Cow position:chr4:41154477-41154701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):71, 48

               
               
               Conread position:172-448
               
               
               Cow position:chr4:61148426-61148721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:212
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):53, 225

               
               
               Conread position:172-505
               
               
               Cow position:chr4:23166737-23167059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):138, 130

               
               
               Conread position:172-508
               
               
               Cow position:chr4:16881530-16881190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:246
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):176, 42

               
               
               Conread position:174-448
               
               
               Cow position:chr4:45685303-45685563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:195
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):171, 55

               
               
               Conread position:174-449
               
               
               Cow position:chr4:19501249-19500986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:201
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):175, 45

               
               
               Conread position:174-449
               
               
               Cow position:chr4:52823569-52823295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:204
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):174, 13

               
               
               Conread position:174-451
               
               
               Cow position:chr4:41371105-41370830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:206
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):174, 33

               
               
               Conread position:174-508
               
               
               Cow position:chr4:39616823-39617126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:245
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):35, 49

               
               
               Conread position:174-508
               
               
               Cow position:chr4:55508413-55508078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:228
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):60, 20

               
               
               Conread position:176-408
               
               
               Cow position:chr4:47041587-47041363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:161
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):172, 55

               
               
               Conread position:179-464
               
               
               Cow position:chr4:65950488-65950777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:212
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):37, 129

               
               
               Conread position:179-508
               
               
               Cow position:chr4:51605768-51605456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:240
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):170, 41

               
               
               Conread position:180-415
               
               
               Cow position:chr4:9570890-9571129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:173
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):39, 127

               
               
               Conread position:180-463
               
               
               Cow position:chr4:20027260-20026983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):169, 62

               
               
               Conread position:181-507
               
               
               Cow position:chr4:33091221-33091533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:220
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):167, 100

               
               
               Conread position:182-508
               
               
               Cow position:chr4:52087778-52088091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):167, 38

               
               
               Conread position:183-401
               
               
               Cow position:chr4:52307769-52307564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):8, 41

               
               
               Conread position:188-448
               
               
               Cow position:chr4:4826973-4827234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):5, 105

               
               
               Conread position:191-432
               
               
               Cow position:chr4:54171474-54171715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:170
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):25, 112

               
               
               Conread position:192-359
               
               
               Cow position:chr4:47047746-47047911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):153, 27

               
               
               Conread position:192-426
               
               
               Cow position:chr4:48143679-48143922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:170
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:192-449
               
               
               Cow position:chr4:45249829-45250077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:175
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):156, 35

               
               
               Conread position:192-508
               
               
               Cow position:chr4:48409413-48409102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:222
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):136, 27

               
               
               Conread position:193-447
               
               
               Cow position:chr4:54927586-54927335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:171
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):156, 32

               
               
               Conread position:193-449
               
               
               Cow position:chr4:61313354-61313106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):22, 59

               
               
               Conread position:193-505
               
               
               Cow position:chr4:37880786-37881093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:216
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):58, 19

               
               
               Conread position:196-434
               
               
               Cow position:chr4:19118863-19119109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):97, 23

               
               
               Conread position:196-446
               
               
               Cow position:chr4:37313027-37313269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):149, 22

               
               
               Conread position:196-450
               
               
               Cow position:chr4:18756290-18756542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):152, 24

               
               
               Conread position:198-432
               
               
               Cow position:chr4:48172998-48173226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:168
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):150, 6

               
               
               Conread position:199-418
               
               
               Cow position:chr4:15439438-15439651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:151
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):149, 92

               
               
               Conread position:201-397
               
               
               Cow position:chr4:44258487-44258280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:147
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):14, 165

               
               
               Conread position:201-448
               
               
               Cow position:chr4:37732626-37732377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):16, 94

               
               
               Conread position:203-448
               
               
               Cow position:chr4:19323836-19324080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):19, 51

               
               
               Conread position:206-502
               
               
               Cow position:chr4:20066354-20066063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:211
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):22, 16

               
               
               Conread position:206-508
               
               
               Cow position:chr4:5913482-5913181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):143, 100

               
               
               Conread position:207-508
               
               
               Cow position:chr4:30771-30475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:200
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):36, 97

               
               
               Conread position:208-442
               
               
               Cow position:chr4:18107291-18107060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):18, 95

               
               
               Conread position:208-508
               
               
               Cow position:chr4:6166439-6166149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:207
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):23, 95

               
               
               Conread position:210-448
               
               
               Cow position:chr4:65265440-65265199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):99, 17

               
               
               Conread position:211-452
               
               
               Cow position:chr4:47280010-47280237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:169
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):187, 47

               
               
               Conread position:213-508
               
               
               Cow position:chr4:13026175-13026477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:222
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):184, 89

               
               
               Conread position:215-449
               
               
               Cow position:chr4:45636039-45636273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):54, 39

               
               
               Conread position:215-508
               
               
               Cow position:chr4:34700163-34699861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:215
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):80, 156

               
               
               Conread position:216-449
               
               
               Cow position:chr4:12901678-12901451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):132, 33

               
               
               Conread position:216-449
               
               
               Cow position:chr4:52779728-52779958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:176
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):129, 83

               
               
               Conread position:216-503
               
               
               Cow position:chr4:21063910-21063629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):22, 54

               
               
               Conread position:224-415
               
               
               Cow position:chr4:51729837-51730022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):124, 23

               
               
               Conread position:224-448
               
               
               Cow position:chr4:22546954-22546736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):124, 71

               
               
               Conread position:224-449
               
               
               Cow position:chr4:46494180-46494410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:167
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):124, 78

               
               
               Conread position:224-452
               
               
               Cow position:chr4:11380168-11380389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:166
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):27, 34

               
               
               Conread position:224-469
               
               
               Cow position:chr4:38946092-38946344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):116, 72

               
               
               Conread position:225-377
               
               
               Cow position:chr4:2537077-2537226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:113
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):123, 71

               
               
               Conread position:225-452
               
               
               Cow position:chr4:45073949-45074169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):123, 56

               
               
               Conread position:227-449
               
               
               Cow position:chr4:17084454-17084233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):122, 66

               
               
               Conread position:227-508
               
               
               Cow position:chr4:38157204-38156910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):120, 85

               
               
               Conread position:230-451
               
               
               Cow position:chr4:45596140-45595923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):118, 72

               
               
               Conread position:237-507
               
               
               Cow position:chr4:11610773-11611046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):160, 65

               
               
               Conread position:238-485
               
               
               Cow position:chr4:9198864-9199106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:178
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):111, 41

               
               
               Conread position:242-449
               
               
               Cow position:chr4:37675517-37675720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:152
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):155, 60

               
               
               Conread position:242-451
               
               
               Cow position:chr4:47510292-47510493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):106, 52

               
               
               Conread position:242-506
               
               
               Cow position:chr4:21250125-21249865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):107, 37

               
               
               Conread position:242-507
               
               
               Cow position:chr4:32693686-32693970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:198
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):106, 60

               
               
               Conread position:242-508
               
               
               Cow position:chr4:40434002-40433741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:187
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):103, 60

               
               
               Conread position:242-508
               
               
               Cow position:chr4:44184209-44183937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:204
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):56, 66

               
               
               Conread position:244-447
               
               
               Cow position:chr4:45563646-45563851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):96, 58

               
               
               Conread position:248-449
               
               
               Cow position:chr4:19098371-19098579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:249-447
               
               
               Cow position:chr4:65175233-65175040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):99, 17

               
               
               Conread position:249-475
               
               
               Cow position:chr4:24481761-24481541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):99, 50

               
               
               Conread position:250-435
               
               
               Cow position:chr4:64657386-64657205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):43, 66

               
               
               Conread position:250-449
               
               
               Cow position:chr4:19102975-19102775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):99, 84

               
               
               Conread position:250-449
               
               
               Cow position:chr4:44773136-44772936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):32, 54

               
               
               Conread position:250-449
               
               
               Cow position:chr4:45626712-45626521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):98, 10

               
               
               Conread position:250-502
               
               
               Cow position:chr4:5580466-5580717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):99, 51

               
               
               Conread position:251-507
               
               
               Cow position:chr4:19292631-19292896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:190
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):97, 51

               
               
               Conread position:252-508
               
               
               Cow position:chr4:63472162-63471907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:191
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):93, 42

               
               
               Conread position:253-469
               
               
               Cow position:chr4:61188957-61188741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):96, 43

               
               
               Conread position:254-384
               
               
               Cow position:chr4:11429927-11430061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):7, 48

               
               
               Conread position:255-473
               
               
               Cow position:chr4:5002678-5002894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:155
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):94, 41

               
               
               Conread position:256-448
               
               
               Cow position:chr4:5964072-5963884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):94, 43

               
               
               Conread position:258-452
               
               
               Cow position:chr4:1788-1981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:141
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):90, 44

               
               
               Conread position:261-426
               
               
               Cow position:chr4:33181455-33181628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:125
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:262-508
               
               
               Cow position:chr4:184213-184452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:171
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):83, 40

               
               
               Conread position:263-434
               
               
               Cow position:chr4:19430283-19430457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):47, 38

               
               
               Conread position:266-449
               
               
               Cow position:chr4:54921162-54920983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:139
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):82, 33

               
               
               Conread position:266-508
               
               
               Cow position:chr4:60030831-60031068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):81, 24

               
               
               Conread position:268-447
               
               
               Cow position:chr4:45705973-45706144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:136
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):80, 26

               
               
               Conread position:268-449
               
               
               Cow position:chr4:20142980-20142805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:140
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):80, 38

               
               
               Conread position:271-434
               
               
               Cow position:chr4:26830633-26830798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:126
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):68, 25

               
               
               Conread position:271-505
               
               
               Cow position:chr4:62370247-62370489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):69, 24

               
               
               Conread position:273-449
               
               
               Cow position:chr4:54541708-54541531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):76, 29

               
               
               Conread position:275-508
               
               
               Cow position:chr4:37035300-37035070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:164
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):70, 17

               
               
               Conread position:278-449
               
               
               Cow position:chr4:19199353-19199180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):14, 35

               
               
               Conread position:285-449
               
               
               Cow position:chr4:38210034-38209868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:289-508
               
               
               Cow position:chr4:38700211-38699992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:172
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):59, 23

               
               
               Conread position:290-449
               
               
               Cow position:chr4:50676224-50676066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):58, 82

               
               
               Conread position:293-506
               
               
               Cow position:chr4:44279987-44279773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):26, 31

               
               
               Conread position:293-508
               
               
               Cow position:chr4:31758218-31758435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:161
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):56, 13

               
               
               Conread position:296-451
               
               
               Cow position:chr4:35638949-35638794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):52, 17

               
               
               Conread position:303-484
               
               
               Cow position:chr4:63262242-63262069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):48, 13

               
               
               Conread position:303-508
               
               
               Cow position:chr4:45871907-45871701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):15, 21

               
               
               Conread position:306-448
               
               
               Cow position:chr4:12135965-12135820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:109
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:307-449
               
               
               Cow position:chr4:51920507-51920651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:308-434
               
               
               Cow position:chr4:19256659-19256785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:102
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):40, 51

               
               
               Conread position:317-448
               
               
               Cow position:chr4:46702685-46702552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:101
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:331-508
               
               
               Cow position:chr4:8083812-8083625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:331-508
               
               
               Cow position:chr4:24432966-24433144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:335-447
               
               
               Cow position:chr4:51708056-51708170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:93
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:340-508
               
               
               Cow position:chr4:2169064-2169233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:120
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:341-506
               
               
               Cow position:chr4:51433408-51433573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):89, 84

               
               
               Conread position:346-508
               
               
               Cow position:chr4:18956655-18956500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):51, 115

               
               
               Conread position:351-506
               
               
               Cow position:chr4:34762326-34762173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:111
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:5-504
               
               
               Cow position:chr5:46611387-46610903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:359
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 58

               
               
               Conread position:6-508
               
               
               Cow position:chr5:44848314-44847809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:529
               
               
               Alignm identity:382
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 72

               
               
               Conread position:10-399
               
               
               Cow position:chr5:18557691-18557310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:252
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):108, 145

               
               
               Conread position:11-300
               
               
               Cow position:chr5:6986861-6987156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 220

               
               
               Conread position:11-432
               
               
               Cow position:chr5:25927983-25927572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:282
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):61, 34

               
               
               Conread position:11-505
               
               
               Cow position:chr5:3442146-3442639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:519
               
               
               Alignm identity:334
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):48, 169

               
               
               Conread position:12-319
               
               
               Cow position:chr5:39710559-39710853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:225
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):87, 49

               
               
               Conread position:12-403
               
               
               Cow position:chr5:72172739-72173120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):97, 55

               
               
               Conread position:13-449
               
               
               Cow position:chr5:26094465-26094026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 239

               
               
               Conread position:15-300
               
               
               Cow position:chr5:42747869-42748150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:204
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):97, 25

               
               
               Conread position:15-432
               
               
               Cow position:chr5:64524172-64523741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 52

               
               
               Conread position:15-445
               
               
               Cow position:chr5:21040266-21039847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 45

               
               
               Conread position:15-449
               
               
               Cow position:chr5:37190386-37189957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):159, 46

               
               
               Conread position:15-450
               
               
               Cow position:chr5:12873455-12873892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:295
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):94, 35

               
               
               Conread position:15-507
               
               
               Cow position:chr5:6528387-6528881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:505
               
               
               Alignm identity:352
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 231

               
               
               Conread position:16-290
               
               
               Cow position:chr5:20974738-20974461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 185

               
               
               Conread position:16-291
               
               
               Cow position:chr5:67462684-67462952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):190, 38

               
               
               Conread position:16-294
               
               
               Cow position:chr5:60519883-60520149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:206
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):93, 45

               
               
               Conread position:16-300
               
               
               Cow position:chr5:44583407-44583135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 15

               
               
               Conread position:16-301
               
               
               Cow position:chr5:45705755-45706040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:201
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):93, 217

               
               
               Conread position:16-309
               
               
               Cow position:chr5:10248425-10248700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:204
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):154, 44

               
               
               Conread position:16-311
               
               
               Cow position:chr5:64062060-64062361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:16-312
               
               
               Cow position:chr5:7921674-7921395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:212
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):53, 112

               
               
               Conread position:16-312
               
               
               Cow position:chr5:30816423-30816722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 193

               
               
               Conread position:16-315
               
               
               Cow position:chr5:43329985-43329685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:211
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):95, 160

               
               
               Conread position:16-323
               
               
               Cow position:chr5:14420637-14420328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:221
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):93, 240

               
               
               Conread position:16-343
               
               
               Cow position:chr5:20344877-20345194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:225
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):94, 109

               
               
               Conread position:16-355
               
               
               Cow position:chr5:21944089-21944443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:250
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):93, 291

               
               
               Conread position:16-362
               
               
               Cow position:chr5:20341598-20341252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:221
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):101, 295

               
               
               Conread position:16-362
               
               
               Cow position:chr5:59065177-59065525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:227
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):101, 250

               
               
               Conread position:16-363
               
               
               Cow position:chr5:3229030-3228681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:225
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):101, 250

               
               
               Conread position:16-364
               
               
               Cow position:chr5:10261534-10261179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:244
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):47, 100

               
               
               Conread position:16-367
               
               
               Cow position:chr5:29255481-29255128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:221
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):93, 289

               
               
               Conread position:16-367
               
               
               Cow position:chr5:74161989-74161641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:226
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):101, 41

               
               
               Conread position:16-369
               
               
               Cow position:chr5:54405186-54404831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 57

               
               
               Conread position:16-373
               
               
               Cow position:chr5:9867886-9868245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:232
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):83, 38

               
               
               Conread position:16-373
               
               
               Cow position:chr5:14542743-14542386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:226
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):92, 63

               
               
               Conread position:16-373
               
               
               Cow position:chr5:20971370-20971013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:238
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):124, 93

               
               
               Conread position:16-373
               
               
               Cow position:chr5:37288917-37289268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:235
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):95, 117

               
               
               Conread position:16-373
               
               
               Cow position:chr5:41067731-41068088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:231
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):124, 93

               
               
               Conread position:16-376
               
               
               Cow position:chr5:6151122-6150761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:235
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):93, 276

               
               
               Conread position:16-383
               
               
               Cow position:chr5:45940905-45940536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 135

               
               
               Conread position:16-395
               
               
               Cow position:chr5:31145074-31144702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:264
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):52, 115

               
               
               Conread position:16-395
               
               
               Cow position:chr5:46122626-46122268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:264
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):146, 29

               
               
               Conread position:16-397
               
               
               Cow position:chr5:5938032-5938409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 205

               
               
               Conread position:16-397
               
               
               Cow position:chr5:23140870-23140502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:270
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):65, 176

               
               
               Conread position:16-397
               
               
               Cow position:chr5:41951373-41951009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 44

               
               
               Conread position:16-397
               
               
               Cow position:chr5:45999313-45998934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:237
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):158, 93

               
               
               Conread position:16-397
               
               
               Cow position:chr5:59877030-59876646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:248
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):93, 295

               
               
               Conread position:16-399
               
               
               Cow position:chr5:279448-279062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:245
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):63, 277

               
               
               Conread position:16-399
               
               
               Cow position:chr5:34612506-34612890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:246
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):101, 275

               
               
               Conread position:16-417
               
               
               Cow position:chr5:42845892-42845485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 171

               
               
               Conread position:16-424
               
               
               Cow position:chr5:55756733-55756300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:292
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):91, 38

               
               
               Conread position:16-427
               
               
               Cow position:chr5:3204546-3204946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:270
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):95, 38

               
               
               Conread position:16-427
               
               
               Cow position:chr5:32697089-32696705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):333, 54

               
               
               Conread position:16-427
               
               
               Cow position:chr5:50637540-50637939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 27

               
               
               Conread position:16-427
               
               
               Cow position:chr5:52645371-52644962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 5

               
               
               Conread position:16-427
               
               
               Cow position:chr5:61839896-61840310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 98

               
               
               Conread position:16-430
               
               
               Cow position:chr5:38805636-38805224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 89

               
               
               Conread position:16-430
               
               
               Cow position:chr5:58793907-58793486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 184

               
               
               Conread position:16-434
               
               
               Cow position:chr5:59216-58809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:276
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):96, 24

               
               
               Conread position:16-434
               
               
               Cow position:chr5:15598525-15598113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 14

               
               
               Conread position:16-434
               
               
               Cow position:chr5:16894061-16893646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 48

               
               
               Conread position:16-436
               
               
               Cow position:chr5:41609022-41609411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 38

               
               
               Conread position:16-440
               
               
               Cow position:chr5:19813512-19813088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 106

               
               
               Conread position:16-440
               
               
               Cow position:chr5:53841992-53842425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 24

               
               
               Conread position:16-443
               
               
               Cow position:chr5:44752604-44752173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 207

               
               
               Conread position:16-443
               
               
               Cow position:chr5:60715647-60715234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 30

               
               
               Conread position:16-443
               
               
               Cow position:chr5:65933221-65932809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 119

               
               
               Conread position:16-446
               
               
               Cow position:chr5:67932756-67932335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 139

               
               
               Conread position:16-447
               
               
               Cow position:chr5:34887490-34887057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 238

               
               
               Conread position:16-447
               
               
               Cow position:chr5:65887306-65886872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 284

               
               
               Conread position:16-448
               
               
               Cow position:chr5:360237-359800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 99

               
               
               Conread position:16-448
               
               
               Cow position:chr5:55068429-55068845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 49

               
               
               Conread position:16-448
               
               
               Cow position:chr5:65752567-65752998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 71

               
               
               Conread position:16-449
               
               
               Cow position:chr5:29771226-29771668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):155, 92

               
               
               Conread position:16-449
               
               
               Cow position:chr5:39936811-39937255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 347

               
               
               Conread position:16-449
               
               
               Cow position:chr5:47317260-47316834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 95

               
               
               Conread position:16-449
               
               
               Cow position:chr5:52165471-52165039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 38

               
               
               Conread position:16-449
               
               
               Cow position:chr5:54311031-54311476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 124

               
               
               Conread position:16-449
               
               
               Cow position:chr5:65776684-65776244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:301
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):52, 28

               
               
               Conread position:16-451
               
               
               Cow position:chr5:6044994-6045438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 210

               
               
               Conread position:16-451
               
               
               Cow position:chr5:29827761-29828188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 139

               
               
               Conread position:16-452
               
               
               Cow position:chr5:67212089-67212503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:304
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):95, 46

               
               
               Conread position:16-455
               
               
               Cow position:chr5:16206434-16206009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 66

               
               
               Conread position:16-485
               
               
               Cow position:chr5:23535885-23536356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:321
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):83, 29

               
               
               Conread position:16-499
               
               
               Cow position:chr5:26377956-26377471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:498
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 45

               
               
               Conread position:16-503
               
               
               Cow position:chr5:66815873-66815378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 142

               
               
               Conread position:16-504
               
               
               Cow position:chr5:37758096-37757651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:491
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 147

               
               
               Conread position:16-506
               
               
               Cow position:chr5:28946345-28945864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:497
               
               
               Alignm identity:366
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 24

               
               
               Conread position:16-506
               
               
               Cow position:chr5:30302606-30303097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:501
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):383, 93

               
               
               Conread position:16-506
               
               
               Cow position:chr5:41604318-41604820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:362
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 50

               
               
               Conread position:16-507
               
               
               Cow position:chr5:17027806-17028293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:498
               
               
               Alignm identity:372
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):171, 92

               
               
               Conread position:16-508
               
               
               Cow position:chr5:24175079-24175569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:367
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 49

               
               
               Conread position:16-508
               
               
               Cow position:chr5:27103083-27102595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:502
               
               
               Alignm identity:371
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 14

               
               
               Conread position:16-508
               
               
               Cow position:chr5:27615212-27615711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:354
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 12

               
               
               Conread position:16-508
               
               
               Cow position:chr5:28927889-28927405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:505
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 212

               
               
               Conread position:16-508
               
               
               Cow position:chr5:30276403-30276905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:517
               
               
               Alignm identity:355
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 92

               
               
               Conread position:16-508
               
               
               Cow position:chr5:34442085-34441582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:372
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 176

               
               
               Conread position:16-508
               
               
               Cow position:chr5:43923441-43922953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 184

               
               
               Conread position:17-286
               
               
               Cow position:chr5:28330620-28330354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):92, 37

               
               
               Conread position:17-295
               
               
               Cow position:chr5:4551841-4552134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:210
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:17-362
               
               
               Cow position:chr5:24485701-24485382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:241
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):331, 44

               
               
               Conread position:17-408
               
               
               Cow position:chr5:21524873-21525258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:273
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):92, 282

               
               
               Conread position:17-423
               
               
               Cow position:chr5:35209763-35209363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):165, 93

               
               
               Conread position:17-433
               
               
               Cow position:chr5:68082251-68081849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 44

               
               
               Conread position:17-440
               
               
               Cow position:chr5:59303559-59303150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 140

               
               
               Conread position:17-447
               
               
               Cow position:chr5:26097006-26097427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):385, 244

               
               
               Conread position:17-448
               
               
               Cow position:chr5:45226120-45225678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 130

               
               
               Conread position:17-449
               
               
               Cow position:chr5:21828565-21829007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 214

               
               
               Conread position:17-473
               
               
               Cow position:chr5:72564468-72564932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 18

               
               
               Conread position:17-506
               
               
               Cow position:chr5:56467413-56467886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:498
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 91

               
               
               Conread position:18-343
               
               
               Cow position:chr5:16184802-16185120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 43

               
               
               Conread position:18-425
               
               
               Cow position:chr5:31480863-31481264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:276
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):87, 154

               
               
               Conread position:18-449
               
               
               Cow position:chr5:15478818-15479265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 250

               
               
               Conread position:18-449
               
               
               Cow position:chr5:39447825-39447392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 208

               
               
               Conread position:18-449
               
               
               Cow position:chr5:44797005-44796593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 43

               
               
               Conread position:18-505
               
               
               Cow position:chr5:47871340-47870839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:352
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 61

               
               
               Conread position:18-508
               
               
               Cow position:chr5:40233847-40234310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:497
               
               
               Alignm identity:334
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):87, 52

               
               
               Conread position:19-322
               
               
               Cow position:chr5:58460694-58460378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:221
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:19-432
               
               
               Cow position:chr5:24348827-24349229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 26

               
               
               Conread position:19-434
               
               
               Cow position:chr5:58855813-58856227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 204

               
               
               Conread position:21-276
               
               
               Cow position:chr5:2332812-2332541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:182
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):7, 197

               
               
               Conread position:21-328
               
               
               Cow position:chr5:9083047-9083361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):46, 285

               
               
               Conread position:21-403
               
               
               Cow position:chr5:65593590-65593962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 76

               
               
               Conread position:21-450
               
               
               Cow position:chr5:9090307-9089887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 45

               
               
               Conread position:21-506
               
               
               Cow position:chr5:58748481-58748964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:491
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 36

               
               
               Conread position:22-336
               
               
               Cow position:chr5:50950267-50950579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:223
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):92, 200

               
               
               Conread position:22-397
               
               
               Cow position:chr5:64321464-64321841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 21

               
               
               Conread position:23-447
               
               
               Cow position:chr5:21617170-21617596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 201

               
               
               Conread position:25-449
               
               
               Cow position:chr5:53855421-53855846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 129

               
               
               Conread position:26-439
               
               
               Cow position:chr5:34183931-34184353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 283

               
               
               Conread position:26-449
               
               
               Cow position:chr5:42063920-42064345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 137

               
               
               Conread position:26-508
               
               
               Cow position:chr5:27420003-27419530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:375
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 156

               
               
               Conread position:27-343
               
               
               Cow position:chr5:6130075-6130386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:27-408
               
               
               Cow position:chr5:60952381-60952759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:258
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):88, 38

               
               
               Conread position:27-505
               
               
               Cow position:chr5:14314241-14314731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:493
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 197

               
               
               Conread position:30-295
               
               
               Cow position:chr5:57327510-57327785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:204
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):30, 44

               
               
               Conread position:30-452
               
               
               Cow position:chr5:26990114-26990531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 145

               
               
               Conread position:35-313
               
               
               Cow position:chr5:4507234-4506949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:201
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):74, 271

               
               
               Conread position:35-370
               
               
               Cow position:chr5:42096347-42096682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:239
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):78, 197

               
               
               Conread position:35-449
               
               
               Cow position:chr5:63987720-63987306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 120

               
               
               Conread position:39-449
               
               
               Cow position:chr5:11229942-11229533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:282
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):70, 23

               
               
               Conread position:41-508
               
               
               Cow position:chr5:328446-328004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:297
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):68, 24

               
               
               Conread position:43-384
               
               
               Cow position:chr5:58229438-58229770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:233
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):52, 114

               
               
               Conread position:46-423
               
               
               Cow position:chr5:22934718-22934342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 179

               
               
               Conread position:46-507
               
               
               Cow position:chr5:34049847-34050325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 258

               
               
               Conread position:47-402
               
               
               Cow position:chr5:34638624-34638976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 133

               
               
               Conread position:47-506
               
               
               Cow position:chr5:18276217-18276674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 39

               
               
               Conread position:50-305
               
               
               Cow position:chr5:56753470-56753728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:189
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):128, 16

               
               
               Conread position:50-306
               
               
               Cow position:chr5:3491943-3492194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:192
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):59, 121

               
               
               Conread position:50-366
               
               
               Cow position:chr5:65924959-65924634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 108

               
               
               Conread position:51-446
               
               
               Cow position:chr5:20779635-20779261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):346, 15

               
               
               Conread position:51-496
               
               
               Cow position:chr5:26595360-26594912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 47

               
               
               Conread position:54-284
               
               
               Cow position:chr5:61656352-61656582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:158
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):59, 179

               
               
               Conread position:54-401
               
               
               Cow position:chr5:50975633-50975993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:210
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):105, 172

               
               
               Conread position:57-448
               
               
               Cow position:chr5:61488362-61487973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 48

               
               
               Conread position:60-449
               
               
               Cow position:chr5:11668427-11668045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 120

               
               
               Conread position:61-443
               
               
               Cow position:chr5:62142423-62142810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 194

               
               
               Conread position:65-427
               
               
               Cow position:chr5:32956333-32955979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):280, 64

               
               
               Conread position:65-448
               
               
               Cow position:chr5:17869472-17869824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:273
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):189, 42

               
               
               Conread position:66-359
               
               
               Cow position:chr5:34115420-34115702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:216
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):43, 80

               
               
               Conread position:66-363
               
               
               Cow position:chr5:18090483-18090791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):7, 91

               
               
               Conread position:66-375
               
               
               Cow position:chr5:58144848-58144538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:222
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):24, 236

               
               
               Conread position:66-443
               
               
               Cow position:chr5:27306076-27306438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:276
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):43, 127

               
               
               Conread position:66-447
               
               
               Cow position:chr5:26477235-26476880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:255
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):43, 89

               
               
               Conread position:66-449
               
               
               Cow position:chr5:30253503-30253881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 60

               
               
               Conread position:66-452
               
               
               Cow position:chr5:43992083-43992467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 68

               
               
               Conread position:66-473
               
               
               Cow position:chr5:46323054-46322639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:288
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):43, 126

               
               
               Conread position:66-473
               
               
               Cow position:chr5:51502770-51503167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 162

               
               
               Conread position:67-506
               
               
               Cow position:chr5:25919855-25919439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):321, 42

               
               
               Conread position:67-508
               
               
               Cow position:chr5:50900667-50901117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:301
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):260, 43

               
               
               Conread position:70-368
               
               
               Cow position:chr5:56433563-56433867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:212
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):99, 40

               
               
               Conread position:70-377
               
               
               Cow position:chr5:2500419-2500112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:224
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):123, 34

               
               
               Conread position:70-433
               
               
               Cow position:chr5:43738186-43737838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):278, 22

               
               
               Conread position:70-449
               
               
               Cow position:chr5:30844874-30845248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 17

               
               
               Conread position:70-449
               
               
               Cow position:chr5:43929972-43929596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 104

               
               
               Conread position:70-449
               
               
               Cow position:chr5:49685519-49685137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:276
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):41, 136

               
               
               Conread position:70-449
               
               
               Cow position:chr5:69337594-69337960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:264
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):104, 38

               
               
               Conread position:70-504
               
               
               Cow position:chr5:1344096-1343662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 17

               
               
               Conread position:70-507
               
               
               Cow position:chr5:75437135-75436695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:295
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):44, 240

               
               
               Conread position:70-508
               
               
               Cow position:chr5:40109263-40109702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:306
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):39, 76

               
               
               Conread position:71-356
               
               
               Cow position:chr5:37714142-37713848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:214
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):38, 158

               
               
               Conread position:71-408
               
               
               Cow position:chr5:73079975-73080304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:232
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):38, 65

               
               
               Conread position:71-432
               
               
               Cow position:chr5:34300688-34301039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:252
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):34, 76

               
               
               Conread position:71-433
               
               
               Cow position:chr5:42744560-42744904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:255
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):274, 37

               
               
               Conread position:71-489
               
               
               Cow position:chr5:54350598-54350172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 103

               
               
               Conread position:71-505
               
               
               Cow position:chr5:30332706-30333146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 79

               
               
               Conread position:71-506
               
               
               Cow position:chr5:62172182-62172614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 8

               
               
               Conread position:71-508
               
               
               Cow position:chr5:1950298-1949859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 57

               
               
               Conread position:71-508
               
               
               Cow position:chr5:40711680-40711248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 136

               
               
               Conread position:71-508
               
               
               Cow position:chr5:40928210-40927796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 49

               
               
               Conread position:71-508
               
               
               Cow position:chr5:55088908-55089340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):172, 38

               
               
               Conread position:72-434
               
               
               Cow position:chr5:17063330-17062957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:258
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):28, 154

               
               
               Conread position:72-447
               
               
               Cow position:chr5:29353365-29352989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 66

               
               
               Conread position:73-380
               
               
               Cow position:chr5:34885391-34885093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:206
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):36, 151

               
               
               Conread position:73-440
               
               
               Cow position:chr5:53835480-53835847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 14

               
               
               Conread position:73-449
               
               
               Cow position:chr5:55967118-55966743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 158

               
               
               Conread position:73-488
               
               
               Cow position:chr5:36854977-36855393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 98

               
               
               Conread position:73-508
               
               
               Cow position:chr5:41164853-41165300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 91

               
               
               Conread position:74-313
               
               
               Cow position:chr5:67655085-67655340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:182
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):41, 74

               
               
               Conread position:74-338
               
               
               Cow position:chr5:56135203-56134937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:191
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):35, 169

               
               
               Conread position:74-508
               
               
               Cow position:chr5:72007087-72006664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 100

               
               
               Conread position:75-338
               
               
               Cow position:chr5:1276708-1276436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):36, 239

               
               
               Conread position:75-466
               
               
               Cow position:chr5:34232510-34232908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:271
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):34, 149

               
               
               Conread position:76-288
               
               
               Cow position:chr5:33467273-33467061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):33, 106

               
               
               Conread position:76-508
               
               
               Cow position:chr5:7723440-7723862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 29

               
               
               Conread position:77-346
               
               
               Cow position:chr5:66831945-66831675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:191
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):25, 55

               
               
               Conread position:77-364
               
               
               Cow position:chr5:12709655-12709943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 146

               
               
               Conread position:77-399
               
               
               Cow position:chr5:20127823-20128141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 57

               
               
               Conread position:77-408
               
               
               Cow position:chr5:64137020-64137355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:232
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):32, 226

               
               
               Conread position:77-448
               
               
               Cow position:chr5:24996455-24996084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:257
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):97, 80

               
               
               Conread position:77-449
               
               
               Cow position:chr5:4032220-4031846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 72

               
               
               Conread position:77-449
               
               
               Cow position:chr5:16938239-16937889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:259
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):32, 82

               
               
               Conread position:77-508
               
               
               Cow position:chr5:40388097-40387683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 86

               
               
               Conread position:78-394
               
               
               Cow position:chr5:40357100-40356762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:240
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):31, 69

               
               
               Conread position:78-449
               
               
               Cow position:chr5:36868515-36868875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:250
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):31, 110

               
               
               Conread position:78-507
               
               
               Cow position:chr5:3771616-3772059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:308
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):31, 110

               
               
               Conread position:78-508
               
               
               Cow position:chr5:39695426-39695850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 30

               
               
               Conread position:79-431
               
               
               Cow position:chr5:65588483-65588821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):319, 30

               
               
               Conread position:79-448
               
               
               Cow position:chr5:56070624-56070998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 145

               
               
               Conread position:79-449
               
               
               Cow position:chr5:37646781-37646404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 128

               
               
               Conread position:79-449
               
               
               Cow position:chr5:54086311-54086678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:267
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):137, 31

               
               
               Conread position:79-449
               
               
               Cow position:chr5:72903453-72903096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:256
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):143, 29

               
               
               Conread position:80-508
               
               
               Cow position:chr5:71454824-71454413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 143

               
               
               Conread position:81-322
               
               
               Cow position:chr5:51490981-51490745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:172
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):28, 50

               
               
               Conread position:81-404
               
               
               Cow position:chr5:56820487-56820171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 55

               
               
               Conread position:81-508
               
               
               Cow position:chr5:41598925-41598513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:295
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):93, 27

               
               
               Conread position:83-447
               
               
               Cow position:chr5:5257522-5257151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 136

               
               
               Conread position:83-449
               
               
               Cow position:chr5:25495563-25495218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:253
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):30, 63

               
               
               Conread position:84-485
               
               
               Cow position:chr5:27411614-27411225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 36

               
               
               Conread position:87-449
               
               
               Cow position:chr5:35969321-35969672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 140

               
               
               Conread position:88-506
               
               
               Cow position:chr5:39442072-39442493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 128

               
               
               Conread position:89-508
               
               
               Cow position:chr5:2309784-2309340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 196

               
               
               Conread position:90-300
               
               
               Cow position:chr5:45036804-45037014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:166
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):21, 130

               
               
               Conread position:90-416
               
               
               Cow position:chr5:12803277-12803617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:254
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):19, 137

               
               
               Conread position:91-316
               
               
               Cow position:chr5:57271483-57271256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):10, 96

               
               
               Conread position:91-360
               
               
               Cow position:chr5:7140318-7140056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):124, 20

               
               
               Conread position:92-508
               
               
               Cow position:chr5:26262890-26262467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 132

               
               
               Conread position:92-508
               
               
               Cow position:chr5:58320678-58320272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 87

               
               
               Conread position:93-426
               
               
               Cow position:chr5:11427454-11427118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 17

               
               
               Conread position:93-440
               
               
               Cow position:chr5:64758974-64758636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):205, 12

               
               
               Conread position:96-395
               
               
               Cow position:chr5:48154685-48154380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:210
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):13, 58

               
               
               Conread position:96-456
               
               
               Cow position:chr5:1688321-1687968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:249
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):123, 12

               
               
               Conread position:96-481
               
               
               Cow position:chr5:57736906-57737273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:271
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):249, 12

               
               
               Conread position:98-307
               
               
               Cow position:chr5:62027153-62026946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:163
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):153, 10

               
               
               Conread position:98-367
               
               
               Cow position:chr5:35235918-35235652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):16, 143

               
               
               Conread position:98-449
               
               
               Cow position:chr5:71494606-71494961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 171

               
               
               Conread position:98-508
               
               
               Cow position:chr5:18898773-18899174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 88

               
               
               Conread position:98-508
               
               
               Cow position:chr5:40039979-40039571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 123

               
               
               Conread position:99-448
               
               
               Cow position:chr5:22643424-22643093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 8

               
               
               Conread position:100-508
               
               
               Cow position:chr5:4280255-4280662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 74

               
               
               Conread position:110-346
               
               
               Cow position:chr5:8994762-8994530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:173
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:110-427
               
               
               Cow position:chr5:9390339-9390675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:227
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:110-427
               
               
               Cow position:chr5:56518406-56518104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:218
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):235, 110

               
               
               Conread position:110-449
               
               
               Cow position:chr5:458285-458628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 201

               
               
               Conread position:112-448
               
               
               Cow position:chr5:6896321-6895988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:240
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):62, 96

               
               
               Conread position:112-508
               
               
               Cow position:chr5:29756143-29756535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 112

               
               
               Conread position:113-363
               
               
               Cow position:chr5:1027885-1027641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:170
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):67, 38

               
               
               Conread position:113-439
               
               
               Cow position:chr5:32282137-32282463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:218
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):61, 111

               
               
               Conread position:116-449
               
               
               Cow position:chr5:17371891-17371560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:214
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):177, 16

               
               
               Conread position:116-451
               
               
               Cow position:chr5:4220790-4221119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:238
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):64, 108

               
               
               Conread position:117-335
               
               
               Cow position:chr5:53146075-53145859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):57, 6

               
               
               Conread position:117-408
               
               
               Cow position:chr5:52040509-52040224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):59, 83

               
               
               Conread position:118-434
               
               
               Cow position:chr5:7044899-7044580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):56, 105

               
               
               Conread position:119-435
               
               
               Cow position:chr5:31561348-31561661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):92, 44

               
               
               Conread position:120-338
               
               
               Cow position:chr5:17644842-17644627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):182, 0

               
               
               Conread position:122-419
               
               
               Cow position:chr5:36486301-36486603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):51, 199

               
               
               Conread position:123-449
               
               
               Cow position:chr5:37808848-37808523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):102, 49

               
               
               Conread position:123-508
               
               
               Cow position:chr5:34624785-34625166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:276
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):51, 101

               
               
               Conread position:124-425
               
               
               Cow position:chr5:55928760-55929060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):221, 97

               
               
               Conread position:125-432
               
               
               Cow position:chr5:54111737-54112036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:217
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):49, 67

               
               
               Conread position:125-486
               
               
               Cow position:chr5:54089856-54090214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:254
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):24, 99

               
               
               Conread position:126-405
               
               
               Cow position:chr5:34167780-34168056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:195
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):14, 22

               
               
               Conread position:127-481
               
               
               Cow position:chr5:31923202-31923545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):245, 53

               
               
               Conread position:129-498
               
               
               Cow position:chr5:7552596-7552232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):113, 92

               
               
               Conread position:131-388
               
               
               Cow position:chr5:29980161-29979904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:192
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):49, 92

               
               
               Conread position:131-423
               
               
               Cow position:chr5:59115205-59115496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:215
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):56, 169

               
               
               Conread position:132-397
               
               
               Cow position:chr5:19778758-19778486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):42, 246

               
               
               Conread position:132-443
               
               
               Cow position:chr5:51935008-51935323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:227
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):41, 173

               
               
               Conread position:132-508
               
               
               Cow position:chr5:62638731-62639103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 89

               
               
               Conread position:136-508
               
               
               Cow position:chr5:55955735-55956128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:278
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):38, 81

               
               
               Conread position:140-447
               
               
               Cow position:chr5:30950086-30949777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 83

               
               
               Conread position:141-415
               
               
               Cow position:chr5:33265613-33265362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:192
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):11, 28

               
               
               Conread position:144-448
               
               
               Cow position:chr5:16214525-16214826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):204, 60

               
               
               Conread position:144-448
               
               
               Cow position:chr5:54060111-54060415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 140

               
               
               Conread position:145-505
               
               
               Cow position:chr5:41452823-41452476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:247
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):203, 16

               
               
               Conread position:145-508
               
               
               Cow position:chr5:23529438-23529084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 58

               
               
               Conread position:149-508
               
               
               Cow position:chr5:37068734-37069080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:246
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):25, 79

               
               
               Conread position:150-449
               
               
               Cow position:chr5:56317143-56317429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:198
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):249, 11

               
               
               Conread position:156-508
               
               
               Cow position:chr5:29844133-29844479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):189, 16

               
               
               Conread position:157-303
               
               
               Cow position:chr5:71579024-71579171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:109
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:157-426
               
               
               Cow position:chr5:66581814-66582081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):68, 135

               
               
               Conread position:159-365
               
               
               Cow position:chr5:51801117-51800917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):189, 26

               
               
               Conread position:160-448
               
               
               Cow position:chr5:14629959-14629666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):148, 59

               
               
               Conread position:161-448
               
               
               Cow position:chr5:66972282-66972568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):187, 135

               
               
               Conread position:161-455
               
               
               Cow position:chr5:29097214-29097513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):54, 136

               
               
               Conread position:161-508
               
               
               Cow position:chr5:38629144-38629485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:234
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):58, 82

               
               
               Conread position:161-508
               
               
               Cow position:chr5:48405319-48404997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:243
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):184, 29

               
               
               Conread position:163-503
               
               
               Cow position:chr5:73556329-73556007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:231
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):120, 37

               
               
               Conread position:164-499
               
               
               Cow position:chr5:19294628-19294310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:225
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):225, 35

               
               
               Conread position:165-442
               
               
               Cow position:chr5:7755703-7755436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):184, 54

               
               
               Conread position:165-449
               
               
               Cow position:chr5:45574480-45574760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):144, 21

               
               
               Conread position:168-449
               
               
               Cow position:chr5:14473553-14473263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:200
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):46, 23

               
               
               Conread position:169-449
               
               
               Cow position:chr5:18288992-18289262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:201
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):227, 135

               
               
               Conread position:171-392
               
               
               Cow position:chr5:991331-991546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:160
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):110, 48

               
               
               Conread position:171-432
               
               
               Cow position:chr5:7057542-7057280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):18, 139

               
               
               Conread position:172-412
               
               
               Cow position:chr5:36255394-36255154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):156, 59

               
               
               Conread position:172-507
               
               
               Cow position:chr5:39874989-39875322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 110

               
               
               Conread position:172-508
               
               
               Cow position:chr5:47696573-47696242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):134, 14

               
               
               Conread position:172-508
               
               
               Cow position:chr5:72951705-72952042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:222
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):31, 49

               
               
               Conread position:173-391
               
               
               Cow position:chr5:25447431-25447645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):47, 13

               
               
               Conread position:174-450
               
               
               Cow position:chr5:45273633-45273361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:193
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):174, 117

               
               
               Conread position:174-497
               
               
               Cow position:chr5:41713175-41713495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):225, 12

               
               
               Conread position:175-434
               
               
               Cow position:chr5:33560865-33560610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):173, 118

               
               
               Conread position:175-449
               
               
               Cow position:chr5:63427137-63426865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):170, 25

               
               
               Conread position:176-347
               
               
               Cow position:chr5:47721408-47721580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:127
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):44, 115

               
               
               Conread position:179-451
               
               
               Cow position:chr5:60747403-60747139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:200
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):169, 21

               
               
               Conread position:183-506
               
               
               Cow position:chr5:16179650-16179307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:245
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):10, 66

               
               
               Conread position:186-447
               
               
               Cow position:chr5:58446685-58446945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 9

               
               
               Conread position:190-397
               
               
               Cow position:chr5:19523781-19523987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):39, 104

               
               
               Conread position:190-449
               
               
               Cow position:chr5:53710810-53710549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):34, 104

               
               
               Conread position:190-473
               
               
               Cow position:chr5:6891134-6890859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:202
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):207, 29

               
               
               Conread position:191-359
               
               
               Cow position:chr5:60448100-60448265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):157, 111

               
               
               Conread position:191-449
               
               
               Cow position:chr5:38076598-38076343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):121, 40

               
               
               Conread position:191-451
               
               
               Cow position:chr5:3639607-3639355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):37, 108

               
               
               Conread position:192-427
               
               
               Cow position:chr5:12901801-12902035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):30, 135

               
               
               Conread position:192-448
               
               
               Cow position:chr5:57768097-57767848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):59, 102

               
               
               Conread position:192-452
               
               
               Cow position:chr5:49440986-49440733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:183
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):157, 27

               
               
               Conread position:192-508
               
               
               Cow position:chr5:49474659-49474336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 27

               
               
               Conread position:193-397
               
               
               Cow position:chr5:57561404-57561610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):32, 116

               
               
               Conread position:193-451
               
               
               Cow position:chr5:13717684-13717429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:197
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):33, 104

               
               
               Conread position:196-449
               
               
               Cow position:chr5:7697895-7698140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:172
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):153, 23

               
               
               Conread position:196-449
               
               
               Cow position:chr5:57419903-57419654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):14, 83

               
               
               Conread position:196-452
               
               
               Cow position:chr5:23678814-23678560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:195
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):29, 111

               
               
               Conread position:197-434
               
               
               Cow position:chr5:14921039-14920805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):152, 22

               
               
               Conread position:197-449
               
               
               Cow position:chr5:35125945-35126195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):107, 9

               
               
               Conread position:198-460
               
               
               Cow position:chr5:4927675-4927416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:187
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):45, 22

               
               
               Conread position:198-508
               
               
               Cow position:chr5:12434427-12434753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:217
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):95, 27

               
               
               Conread position:199-427
               
               
               Cow position:chr5:56635793-56636013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):149, 71

               
               
               Conread position:199-442
               
               
               Cow position:chr5:21535221-21534978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:181
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):44, 7

               
               
               Conread position:199-485
               
               
               Cow position:chr5:18553793-18554068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:206
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):146, 6

               
               
               Conread position:200-475
               
               
               Cow position:chr5:41293974-41294244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):148, 94

               
               
               Conread position:201-434
               
               
               Cow position:chr5:53946790-53947022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:162
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):57, 19

               
               
               Conread position:202-408
               
               
               Cow position:chr5:34192794-34193005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):24, 50

               
               
               Conread position:203-508
               
               
               Cow position:chr5:35785079-35784788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:220
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):145, 34

               
               
               Conread position:208-505
               
               
               Cow position:chr5:47836444-47836745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:202
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):14, 106

               
               
               Conread position:210-504
               
               
               Cow position:chr5:28035642-28035938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 99

               
               
               Conread position:213-507
               
               
               Cow position:chr5:41945759-41946044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:210
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):105, 19

               
               
               Conread position:214-505
               
               
               Cow position:chr5:50575692-50575984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:213
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):134, 82

               
               
               Conread position:220-440
               
               
               Cow position:chr5:61914483-61914696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):140, 73

               
               
               Conread position:220-508
               
               
               Cow position:chr5:18695091-18695354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:201
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):23, 11

               
               
               Conread position:224-426
               
               
               Cow position:chr5:57527001-57526812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):124, 72

               
               
               Conread position:224-449
               
               
               Cow position:chr5:47323382-47323602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:172
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):175, 80

               
               
               Conread position:224-464
               
               
               Cow position:chr5:59873174-59872926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:168
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):77, 236

               
               
               Conread position:224-485
               
               
               Cow position:chr5:42782800-42782548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:193
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):125, 47

               
               
               Conread position:227-448
               
               
               Cow position:chr5:43402820-43403042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):72, 204

               
               
               Conread position:229-448
               
               
               Cow position:chr5:29515576-29515366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:169
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):14, 67

               
               
               Conread position:237-508
               
               
               Cow position:chr5:38738729-38738981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):160, 57

               
               
               Conread position:242-504
               
               
               Cow position:chr5:17267959-17267699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:179
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):107, 81

               
               
               Conread position:243-447
               
               
               Cow position:chr5:63234890-63234691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:147
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):156, 56

               
               
               Conread position:243-448
               
               
               Cow position:chr5:20843464-20843255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:144
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:243-451
               
               
               Cow position:chr5:55796029-55795824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:152
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):105, 47

               
               
               Conread position:243-506
               
               
               Cow position:chr5:1461023-1461269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):106, 56

               
               
               Conread position:244-503
               
               
               Cow position:chr5:66189924-66190178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):39, 35

               
               
               Conread position:245-466
               
               
               Cow position:chr5:27502885-27503090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:161
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):150, 9

               
               
               Conread position:246-449
               
               
               Cow position:chr5:45420195-45419997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):102, 50

               
               
               Conread position:247-507
               
               
               Cow position:chr5:63831867-63832133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):81, 52

               
               
               Conread position:248-508
               
               
               Cow position:chr5:15482977-15483234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:182
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):103, 23

               
               
               Conread position:254-426
               
               
               Cow position:chr5:57156367-57156195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):88, 42

               
               
               Conread position:258-471
               
               
               Cow position:chr5:34279650-34279445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):91, 44

               
               
               Conread position:262-451
               
               
               Cow position:chr5:49501870-49501682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):86, 48

               
               
               Conread position:262-508
               
               
               Cow position:chr5:56153569-56153817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):83, 44

               
               
               Conread position:264-464
               
               
               Cow position:chr5:18062378-18062164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:153
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:266-504
               
               
               Cow position:chr5:38717277-38717509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:176
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):79, 12

               
               
               Conread position:266-506
               
               
               Cow position:chr5:45396452-45396216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):74, 53

               
               
               Conread position:266-508
               
               
               Cow position:chr5:40237172-40237406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:172
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):82, 47

               
               
               Conread position:268-449
               
               
               Cow position:chr5:57101565-57101384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:136
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):80, 97

               
               
               Conread position:268-508
               
               
               Cow position:chr5:48178426-48178183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):83, 33

               
               
               Conread position:272-508
               
               
               Cow position:chr5:34914590-34914358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:183
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):77, 30

               
               
               Conread position:274-508
               
               
               Cow position:chr5:21195147-21194924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):155, 49

               
               
               Conread position:276-432
               
               
               Cow position:chr5:45574399-45574242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):72, 30

               
               
               Conread position:281-440
               
               
               Cow position:chr5:61875516-61875668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):116, 18

               
               
               Conread position:281-447
               
               
               Cow position:chr5:57230366-57230200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:122
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):67, 25

               
               
               Conread position:285-427
               
               
               Cow position:chr5:62415986-62415843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):65, 35

               
               
               Conread position:285-449
               
               
               Cow position:chr5:58555112-58555277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):63, 35

               
               
               Conread position:291-508
               
               
               Cow position:chr5:23527652-23527431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:169
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:302-506
               
               
               Cow position:chr5:58343850-58344055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):14, 28

               
               
               Conread position:304-508
               
               
               Cow position:chr5:21531111-21530911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:149
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):14, 20

               
               
               Conread position:304-508
               
               
               Cow position:chr5:65197688-65197492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:152
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):45, 157

               
               
               Conread position:306-449
               
               
               Cow position:chr5:59627095-59627240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:107
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:307-447
               
               
               Cow position:chr5:9369274-9369133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):41, 13

               
               
               Conread position:308-449
               
               
               Cow position:chr5:55129340-55129483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:108
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:311-449
               
               
               Cow position:chr5:44163369-44163228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:109
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:311-508
               
               
               Cow position:chr5:4267670-4267878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):37, 162

               
               
               Conread position:313-505
               
               
               Cow position:chr5:1349789-1349598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:142
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):36, 10

               
               
               Conread position:316-505
               
               
               Cow position:chr5:42316903-42316719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:136
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):115, 70

               
               
               Conread position:321-434
               
               
               Cow position:chr5:3743332-3743447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:93
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:330-508
               
               
               Cow position:chr5:75228180-75227995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:332-472
               
               
               Cow position:chr5:61365553-61365694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:107
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:333-508
               
               
               Cow position:chr5:53145730-53145549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):16, 153

               
               
               Conread position:346-508
               
               
               Cow position:chr5:30638543-30638386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):40, 106

               
               
               Conread position:348-507
               
               
               Cow position:chr5:42049723-42049877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:125
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):51, 29

               
               
               Conread position:367-508
               
               
               Cow position:chr5:39134203-39134061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:106
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:379-508
               
               
               Cow position:chr5:61647259-61647129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:100
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:387-508
               
               
               Cow position:chr5:13890545-13890668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:100
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:6-427
               
               
               Cow position:chr6:39093474-39093883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:294
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):5, 84

               
               
               Conread position:10-448
               
               
               Cow position:chr6:2546959-2547408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):164, 119

               
               
               Conread position:11-383
               
               
               Cow position:chr6:33984673-33985066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:265
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):49, 154

               
               
               Conread position:12-403
               
               
               Cow position:chr6:59508066-59508464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 79

               
               
               Conread position:12-455
               
               
               Cow position:chr6:5095836-5095382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 166

               
               
               Conread position:12-469
               
               
               Cow position:chr6:8318447-8317993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 51

               
               
               Conread position:12-504
               
               
               Cow position:chr6:6943959-6943478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:504
               
               
               Alignm identity:353
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 52

               
               
               Conread position:12-506
               
               
               Cow position:chr6:4022825-4023312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:505
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):134, 8

               
               
               Conread position:15-294
               
               
               Cow position:chr6:61575325-61575610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:205
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):100, 213

               
               
               Conread position:15-373
               
               
               Cow position:chr6:56926918-56927278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:235
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):102, 277

               
               
               Conread position:15-432
               
               
               Cow position:chr6:35725813-35726232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:284
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):94, 78

               
               
               Conread position:15-469
               
               
               Cow position:chr6:67214463-67214922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 154

               
               
               Conread position:16-278
               
               
               Cow position:chr6:1784043-1783792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):93, 33

               
               
               Conread position:16-284
               
               
               Cow position:chr6:21712578-21712852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:177
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:16-291
               
               
               Cow position:chr6:32916198-32915926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 155

               
               
               Conread position:16-292
               
               
               Cow position:chr6:24327413-24327142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:16-297
               
               
               Cow position:chr6:50446037-50445756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:200
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):195, 89

               
               
               Conread position:16-301
               
               
               Cow position:chr6:10332384-10332082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:213
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):61, 202

               
               
               Conread position:16-303
               
               
               Cow position:chr6:15046372-15046070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:219
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):61, 11

               
               
               Conread position:16-305
               
               
               Cow position:chr6:12927845-12928132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:210
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):95, 29

               
               
               Conread position:16-346
               
               
               Cow position:chr6:5958293-5957979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:242
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):156, 14

               
               
               Conread position:16-346
               
               
               Cow position:chr6:16737743-16738068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 212

               
               
               Conread position:16-346
               
               
               Cow position:chr6:62479443-62479111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:224
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):93, 175

               
               
               Conread position:16-347
               
               
               Cow position:chr6:60456553-60456879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 49

               
               
               Conread position:16-354
               
               
               Cow position:chr6:12629736-12630079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:235
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):23, 200

               
               
               Conread position:16-361
               
               
               Cow position:chr6:66304118-66303775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:238
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):191, 25

               
               
               Conread position:16-363
               
               
               Cow position:chr6:34075749-34076096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:249
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):95, 45

               
               
               Conread position:16-367
               
               
               Cow position:chr6:7137470-7137117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:227
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):93, 249

               
               
               Conread position:16-367
               
               
               Cow position:chr6:7449367-7449716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:228
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):101, 295

               
               
               Conread position:16-367
               
               
               Cow position:chr6:56441208-56440855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:232
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):101, 276

               
               
               Conread position:16-368
               
               
               Cow position:chr6:642855-642496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 279

               
               
               Conread position:16-369
               
               
               Cow position:chr6:3978939-3978580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:251
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):150, 57

               
               
               Conread position:16-373
               
               
               Cow position:chr6:13494219-13493860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:234
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):101, 289

               
               
               Conread position:16-373
               
               
               Cow position:chr6:56080045-56079688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:230
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):88, 139

               
               
               Conread position:16-379
               
               
               Cow position:chr6:44098810-44099169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 45

               
               
               Conread position:16-388
               
               
               Cow position:chr6:28148568-28148927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:247
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):22, 70

               
               
               Conread position:16-390
               
               
               Cow position:chr6:28293953-28293574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:240
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):101, 294

               
               
               Conread position:16-399
               
               
               Cow position:chr6:1770473-1770095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 148

               
               
               Conread position:16-399
               
               
               Cow position:chr6:51733953-51734333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:238
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):93, 41

               
               
               Conread position:16-400
               
               
               Cow position:chr6:6768999-6769384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:246
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):101, 139

               
               
               Conread position:16-400
               
               
               Cow position:chr6:55040495-55040110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:256
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):86, 153

               
               
               Conread position:16-412
               
               
               Cow position:chr6:2607336-2607723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:274
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):83, 38

               
               
               Conread position:16-416
               
               
               Cow position:chr6:11789124-11789509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 191

               
               
               Conread position:16-420
               
               
               Cow position:chr6:18049303-18048899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 135

               
               
               Conread position:16-422
               
               
               Cow position:chr6:31635965-31635557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 83

               
               
               Conread position:16-422
               
               
               Cow position:chr6:47305050-47305467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 71

               
               
               Conread position:16-423
               
               
               Cow position:chr6:53401093-53401484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 57

               
               
               Conread position:16-427
               
               
               Cow position:chr6:60057943-60057523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 75

               
               
               Conread position:16-434
               
               
               Cow position:chr6:31525774-31526185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 38

               
               
               Conread position:16-437
               
               
               Cow position:chr6:63272895-63272470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:284
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):61, 215

               
               
               Conread position:16-440
               
               
               Cow position:chr6:14839304-14838899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:293
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):154, 89

               
               
               Conread position:16-445
               
               
               Cow position:chr6:14958621-14958190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 27

               
               
               Conread position:16-447
               
               
               Cow position:chr6:6343150-6343582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 13

               
               
               Conread position:16-447
               
               
               Cow position:chr6:21004378-21004828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 71

               
               
               Conread position:16-447
               
               
               Cow position:chr6:35103602-35103176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 44

               
               
               Conread position:16-448
               
               
               Cow position:chr6:6067966-6067548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:314
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):57, 43

               
               
               Conread position:16-448
               
               
               Cow position:chr6:11169430-11169855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):140, 90

               
               
               Conread position:16-448
               
               
               Cow position:chr6:19681794-19681372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):132, 59

               
               
               Conread position:16-448
               
               
               Cow position:chr6:27851982-27851555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 170

               
               
               Conread position:16-448
               
               
               Cow position:chr6:33302133-33302547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:288
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):91, 24

               
               
               Conread position:16-449
               
               
               Cow position:chr6:10176576-10176148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 51

               
               
               Conread position:16-449
               
               
               Cow position:chr6:35181530-35181103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 25

               
               
               Conread position:16-449
               
               
               Cow position:chr6:35842383-35842811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):199, 92

               
               
               Conread position:16-449
               
               
               Cow position:chr6:35990506-35990080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 56

               
               
               Conread position:16-449
               
               
               Cow position:chr6:46465550-46465975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:289
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):99, 158

               
               
               Conread position:16-449
               
               
               Cow position:chr6:47339634-47339202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 101

               
               
               Conread position:16-451
               
               
               Cow position:chr6:16706732-16707168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 45

               
               
               Conread position:16-451
               
               
               Cow position:chr6:28482737-28483172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 282

               
               
               Conread position:16-452
               
               
               Cow position:chr6:54867234-54867674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 41

               
               
               Conread position:16-458
               
               
               Cow position:chr6:51387488-51387912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):156, 51

               
               
               Conread position:16-469
               
               
               Cow position:chr6:21534781-21535213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 155

               
               
               Conread position:16-480
               
               
               Cow position:chr6:57119205-57118758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 43

               
               
               Conread position:16-485
               
               
               Cow position:chr6:19427172-19427640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 63

               
               
               Conread position:16-497
               
               
               Cow position:chr6:9008885-9008406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:490
               
               
               Alignm identity:351
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 54

               
               
               Conread position:16-504
               
               
               Cow position:chr6:33852061-33851592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:491
               
               
               Alignm identity:317
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):290, 97

               
               
               Conread position:16-505
               
               
               Cow position:chr6:40031916-40032407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:501
               
               
               Alignm identity:360
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):131, 147

               
               
               Conread position:16-505
               
               
               Cow position:chr6:46292608-46292127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 53

               
               
               Conread position:16-506
               
               
               Cow position:chr6:24004269-24004749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:501
               
               
               Alignm identity:371
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 94

               
               
               Conread position:16-506
               
               
               Cow position:chr6:28147973-28148459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 66

               
               
               Conread position:16-506
               
               
               Cow position:chr6:32121633-32122124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:501
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 205

               
               
               Conread position:16-507
               
               
               Cow position:chr6:4468483-4468996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:532
               
               
               Alignm identity:351
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):86, 38

               
               
               Conread position:16-507
               
               
               Cow position:chr6:16699984-16700484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:356
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 38

               
               
               Conread position:16-508
               
               
               Cow position:chr6:20255658-20255194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:499
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 33

               
               
               Conread position:16-508
               
               
               Cow position:chr6:28476900-28477380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:502
               
               
               Alignm identity:355
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 56

               
               
               Conread position:16-508
               
               
               Cow position:chr6:28811273-28810793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:504
               
               
               Alignm identity:358
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 59

               
               
               Conread position:16-508
               
               
               Cow position:chr6:32125789-32126283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:515
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 190

               
               
               Conread position:16-508
               
               
               Cow position:chr6:34196426-34195931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:504
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 155

               
               
               Conread position:16-508
               
               
               Cow position:chr6:36470843-36470347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:354
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 160

               
               
               Conread position:16-508
               
               
               Cow position:chr6:36652152-36652630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:495
               
               
               Alignm identity:376
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):329, 16

               
               
               Conread position:16-508
               
               
               Cow position:chr6:37611832-37612318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:515
               
               
               Alignm identity:342
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):27, 122

               
               
               Conread position:16-508
               
               
               Cow position:chr6:65870746-65871262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:517
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:17-254
               
               
               Cow position:chr6:10649295-10649063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):130, 0

               
               
               Conread position:17-338
               
               
               Cow position:chr6:9733107-9732798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:227
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):92, 13

               
               
               Conread position:17-418
               
               
               Cow position:chr6:57164150-57164552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 95

               
               
               Conread position:17-439
               
               
               Cow position:chr6:222717-222310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:265
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):92, 122

               
               
               Conread position:17-443
               
               
               Cow position:chr6:6060834-6060424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 157

               
               
               Conread position:17-448
               
               
               Cow position:chr6:55842437-55842011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:289
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):94, 137

               
               
               Conread position:17-451
               
               
               Cow position:chr6:15938141-15937700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 125

               
               
               Conread position:17-498
               
               
               Cow position:chr6:24583513-24583029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:498
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 75

               
               
               Conread position:17-504
               
               
               Cow position:chr6:63047299-63047803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:505
               
               
               Alignm identity:362
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:17-507
               
               
               Cow position:chr6:42565409-42565900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:501
               
               
               Alignm identity:357
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 107

               
               
               Conread position:17-508
               
               
               Cow position:chr6:17557098-17557606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:515
               
               
               Alignm identity:327
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):92, 86

               
               
               Conread position:17-508
               
               
               Cow position:chr6:38771021-38771502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:504
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 32

               
               
               Conread position:17-508
               
               
               Cow position:chr6:55474973-55475468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:501
               
               
               Alignm identity:372
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):206, 78

               
               
               Conread position:18-342
               
               
               Cow position:chr6:20231101-20230781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:224
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):91, 101

               
               
               Conread position:18-443
               
               
               Cow position:chr6:5302675-5302272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 35

               
               
               Conread position:18-448
               
               
               Cow position:chr6:323586-323154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:291
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):99, 241

               
               
               Conread position:18-448
               
               
               Cow position:chr6:24781839-24781408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 291

               
               
               Conread position:18-449
               
               
               Cow position:chr6:32867482-32867065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 198

               
               
               Conread position:18-449
               
               
               Cow position:chr6:51674634-51675061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 164

               
               
               Conread position:18-487
               
               
               Cow position:chr6:42693087-42693557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 320

               
               
               Conread position:18-497
               
               
               Cow position:chr6:16675550-16676010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:488
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):331, 25

               
               
               Conread position:18-506
               
               
               Cow position:chr6:24623259-24622768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:504
               
               
               Alignm identity:327
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):61, 78

               
               
               Conread position:18-508
               
               
               Cow position:chr6:12337709-12338221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:514
               
               
               Alignm identity:366
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 434

               
               
               Conread position:18-508
               
               
               Cow position:chr6:16625672-16626158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:501
               
               
               Alignm identity:359
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 205

               
               
               Conread position:18-508
               
               
               Cow position:chr6:34549133-34549607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:498
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 96

               
               
               Conread position:19-408
               
               
               Cow position:chr6:50746702-50747110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 121

               
               
               Conread position:20-451
               
               
               Cow position:chr6:44078242-44078669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 172

               
               
               Conread position:20-508
               
               
               Cow position:chr6:63197441-63196950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:500
               
               
               Alignm identity:359
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 9

               
               
               Conread position:21-449
               
               
               Cow position:chr6:54365596-54365178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 89

               
               
               Conread position:21-508
               
               
               Cow position:chr6:48807266-48806801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:497
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 44

               
               
               Conread position:22-301
               
               
               Cow position:chr6:40264469-40264192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:197
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):89, 148

               
               
               Conread position:22-427
               
               
               Cow position:chr6:26728798-26728400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 142

               
               
               Conread position:22-449
               
               
               Cow position:chr6:13367028-13367439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 42

               
               
               Conread position:26-473
               
               
               Cow position:chr6:44372211-44371763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 164

               
               
               Conread position:27-408
               
               
               Cow position:chr6:35471793-35471397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:264
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):82, 202

               
               
               Conread position:28-506
               
               
               Cow position:chr6:45596790-45596317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:490
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 19

               
               
               Conread position:29-449
               
               
               Cow position:chr6:61515462-61515039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 274

               
               
               Conread position:29-504
               
               
               Cow position:chr6:47026212-47026686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 202

               
               
               Conread position:30-448
               
               
               Cow position:chr6:40713762-40713356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:284
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):81, 13

               
               
               Conread position:32-508
               
               
               Cow position:chr6:65872797-65873241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:322
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):77, 41

               
               
               Conread position:36-362
               
               
               Cow position:chr6:65839132-65838804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:211
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):81, 275

               
               
               Conread position:39-449
               
               
               Cow position:chr6:3952270-3952672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):309, 71

               
               
               Conread position:40-373
               
               
               Cow position:chr6:30016121-30015786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:214
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):69, 252

               
               
               Conread position:40-449
               
               
               Cow position:chr6:53933094-53932694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):144, 67

               
               
               Conread position:43-432
               
               
               Cow position:chr6:13592462-13592846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:255
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):66, 17

               
               
               Conread position:44-448
               
               
               Cow position:chr6:20605685-20606112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:294
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):9, 20

               
               
               Conread position:46-449
               
               
               Cow position:chr6:15242588-15242990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 40

               
               
               Conread position:47-438
               
               
               Cow position:chr6:56849771-56850162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 116

               
               
               Conread position:48-300
               
               
               Cow position:chr6:2423503-2423750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):61, 86

               
               
               Conread position:50-408
               
               
               Cow position:chr6:35539742-35539396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:229
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):59, 16

               
               
               Conread position:54-397
               
               
               Cow position:chr6:61113510-61113868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:245
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:54-448
               
               
               Cow position:chr6:41375513-41375923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:275
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):37, 42

               
               
               Conread position:55-434
               
               
               Cow position:chr6:20098203-20097820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 166

               
               
               Conread position:56-427
               
               
               Cow position:chr6:27110352-27110729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 10

               
               
               Conread position:57-508
               
               
               Cow position:chr6:56376584-56376140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):186, 55

               
               
               Conread position:60-297
               
               
               Cow position:chr6:1891079-1890840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):55, 185

               
               
               Conread position:65-300
               
               
               Cow position:chr6:45160520-45160287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):42, 105

               
               
               Conread position:65-434
               
               
               Cow position:chr6:38614595-38614951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 106

               
               
               Conread position:66-434
               
               
               Cow position:chr6:60350527-60350153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 159

               
               
               Conread position:66-450
               
               
               Cow position:chr6:67950731-67951104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 108

               
               
               Conread position:66-506
               
               
               Cow position:chr6:7824535-7824957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 32

               
               
               Conread position:67-507
               
               
               Cow position:chr6:19401635-19402075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:298
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):42, 105

               
               
               Conread position:69-483
               
               
               Cow position:chr6:38641272-38641677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 106

               
               
               Conread position:70-397
               
               
               Cow position:chr6:54600145-54600449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):29, 39

               
               
               Conread position:70-430
               
               
               Cow position:chr6:66874138-66874484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 85

               
               
               Conread position:70-448
               
               
               Cow position:chr6:21869869-21869496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 104

               
               
               Conread position:71-306
               
               
               Cow position:chr6:39994684-39994450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):38, 165

               
               
               Conread position:71-326
               
               
               Cow position:chr6:52401638-52401893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:181
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):40, 96

               
               
               Conread position:71-353
               
               
               Cow position:chr6:56041845-56041566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:205
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):38, 126

               
               
               Conread position:71-362
               
               
               Cow position:chr6:56902641-56902930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):44, 155

               
               
               Conread position:71-421
               
               
               Cow position:chr6:30474108-30474454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:258
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):104, 42

               
               
               Conread position:71-439
               
               
               Cow position:chr6:23248186-23247822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:258
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):38, 154

               
               
               Conread position:71-447
               
               
               Cow position:chr6:44194768-44194398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 153

               
               
               Conread position:71-448
               
               
               Cow position:chr6:28977254-28976887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 117

               
               
               Conread position:71-449
               
               
               Cow position:chr6:38440959-38441326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 134

               
               
               Conread position:71-504
               
               
               Cow position:chr6:17090376-17090808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 37

               
               
               Conread position:71-506
               
               
               Cow position:chr6:6995167-6994748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 38

               
               
               Conread position:71-508
               
               
               Cow position:chr6:31564556-31564121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 121

               
               
               Conread position:71-508
               
               
               Cow position:chr6:45065229-45064804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 85

               
               
               Conread position:71-508
               
               
               Cow position:chr6:48573105-48572670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 25

               
               
               Conread position:71-508
               
               
               Cow position:chr6:54490963-54490515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 103

               
               
               Conread position:72-470
               
               
               Cow position:chr6:7539351-7539747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:275
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):33, 137

               
               
               Conread position:73-294
               
               
               Cow position:chr6:30786369-30786154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):36, 93

               
               
               Conread position:73-363
               
               
               Cow position:chr6:49685364-49685649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:200
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):36, 140

               
               
               Conread position:73-411
               
               
               Cow position:chr6:29239722-29240055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:232
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):33, 82

               
               
               Conread position:73-423
               
               
               Cow position:chr6:47327289-47326945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:247
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):32, 151

               
               
               Conread position:73-447
               
               
               Cow position:chr6:41733406-41733784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:260
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):36, 98

               
               
               Conread position:73-449
               
               
               Cow position:chr6:38207716-38207338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 158

               
               
               Conread position:73-506
               
               
               Cow position:chr6:7190340-7189902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 133

               
               
               Conread position:73-506
               
               
               Cow position:chr6:51893734-51893296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:297
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):36, 240

               
               
               Conread position:74-434
               
               
               Cow position:chr6:21110749-21111090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 115

               
               
               Conread position:74-448
               
               
               Cow position:chr6:55282509-55282140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:259
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):34, 132

               
               
               Conread position:74-508
               
               
               Cow position:chr6:38018054-38018469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:296
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):29, 96

               
               
               Conread position:76-449
               
               
               Cow position:chr6:60442201-60442561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:250
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):31, 123

               
               
               Conread position:77-343
               
               
               Cow position:chr6:48344111-48344379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 154

               
               
               Conread position:77-347
               
               
               Cow position:chr6:25773598-25773335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:204
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):32, 77

               
               
               Conread position:77-360
               
               
               Cow position:chr6:1907322-1907608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):25, 150

               
               
               Conread position:77-364
               
               
               Cow position:chr6:5445412-5445691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):99, 36

               
               
               Conread position:77-415
               
               
               Cow position:chr6:35415738-35415396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 50

               
               
               Conread position:77-434
               
               
               Cow position:chr6:242597-242930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:255
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):32, 72

               
               
               Conread position:78-508
               
               
               Cow position:chr6:899500-899090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:285
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):271, 35

               
               
               Conread position:79-302
               
               
               Cow position:chr6:15923212-15922990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:151
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):141, 0

               
               
               Conread position:79-449
               
               
               Cow position:chr6:17997530-17997166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 187

               
               
               Conread position:79-508
               
               
               Cow position:chr6:31425778-31425347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:298
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):30, 115

               
               
               Conread position:79-508
               
               
               Cow position:chr6:35435788-35436218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 112

               
               
               Conread position:81-307
               
               
               Cow position:chr6:62324777-62325010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:159
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:81-389
               
               
               Cow position:chr6:24961932-24962238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):28, 146

               
               
               Conread position:81-449
               
               
               Cow position:chr6:37148985-37149343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):267, 29

               
               
               Conread position:81-508
               
               
               Cow position:chr6:827919-827495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 114

               
               
               Conread position:82-389
               
               
               Cow position:chr6:57405336-57405032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:224
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):27, 37

               
               
               Conread position:83-505
               
               
               Cow position:chr6:53139140-53138710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:282
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):31, 278

               
               
               Conread position:83-508
               
               
               Cow position:chr6:23532452-23532877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:304
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):26, 120

               
               
               Conread position:84-449
               
               
               Cow position:chr6:54701330-54701697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:238
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):33, 207

               
               
               Conread position:89-426
               
               
               Cow position:chr6:7989618-7989284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:228
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):85, 20

               
               
               Conread position:89-447
               
               
               Cow position:chr6:53519825-53519472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:243
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):191, 21

               
               
               Conread position:89-449
               
               
               Cow position:chr6:54864871-54864506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 84

               
               
               Conread position:89-506
               
               
               Cow position:chr6:15782730-15782304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 112

               
               
               Conread position:89-508
               
               
               Cow position:chr6:24223366-24222946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 238

               
               
               Conread position:90-434
               
               
               Cow position:chr6:415891-416264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:265
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:90-464
               
               
               Cow position:chr6:14658403-14658774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:262
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):84, 109

               
               
               Conread position:90-506
               
               
               Cow position:chr6:6367866-6367463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:275
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):15, 60

               
               
               Conread position:91-449
               
               
               Cow position:chr6:37199748-37199384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:268
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):18, 224

               
               
               Conread position:91-460
               
               
               Cow position:chr6:66131105-66131469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 72

               
               
               Conread position:91-508
               
               
               Cow position:chr6:24545414-24545826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 99

               
               
               Conread position:92-449
               
               
               Cow position:chr6:16191466-16191825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:247
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):82, 65

               
               
               Conread position:94-470
               
               
               Cow position:chr6:54144102-54144477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:264
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):13, 131

               
               
               Conread position:95-397
               
               
               Cow position:chr6:20157129-20157434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:209
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):46, 13

               
               
               Conread position:95-451
               
               
               Cow position:chr6:30973846-30974192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:251
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):92, 15

               
               
               Conread position:95-505
               
               
               Cow position:chr6:65871702-65872096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 13

               
               
               Conread position:96-313
               
               
               Cow position:chr6:33276841-33277060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:156
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):13, 70

               
               
               Conread position:96-423
               
               
               Cow position:chr6:50271292-50270984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:230
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):13, 125

               
               
               Conread position:96-434
               
               
               Cow position:chr6:8788235-8787898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 94

               
               
               Conread position:96-448
               
               
               Cow position:chr6:63299221-63298878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):252, 13

               
               
               Conread position:96-449
               
               
               Cow position:chr6:59069826-59069466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 129

               
               
               Conread position:96-449
               
               
               Cow position:chr6:67456505-67456872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:246
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):13, 216

               
               
               Conread position:96-451
               
               
               Cow position:chr6:528474-528128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:242
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):7, 128

               
               
               Conread position:96-506
               
               
               Cow position:chr6:15997418-15997010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:280
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):32, 17

               
               
               Conread position:96-508
               
               
               Cow position:chr6:21231338-21231743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 78

               
               
               Conread position:97-449
               
               
               Cow position:chr6:12092180-12091838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:244
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):14, 69

               
               
               Conread position:97-482
               
               
               Cow position:chr6:7173960-7173567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:267
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):14, 135

               
               
               Conread position:98-354
               
               
               Cow position:chr6:53731325-53731582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:188
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):11, 195

               
               
               Conread position:98-434
               
               
               Cow position:chr6:16423503-16423840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:237
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):11, 76

               
               
               Conread position:98-505
               
               
               Cow position:chr6:3545508-3545887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 67

               
               
               Conread position:98-508
               
               
               Cow position:chr6:12652010-12652411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 124

               
               
               Conread position:98-508
               
               
               Cow position:chr6:33918047-33917626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 128

               
               
               Conread position:100-343
               
               
               Cow position:chr6:18968965-18968734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:100-355
               
               
               Cow position:chr6:61137179-61137434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):76, 123

               
               
               Conread position:100-379
               
               
               Cow position:chr6:14850908-14850631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:199
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):11, 97

               
               
               Conread position:107-422
               
               
               Cow position:chr6:25008529-25008845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:225
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):214, 97

               
               
               Conread position:108-420
               
               
               Cow position:chr6:28318225-28318522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:223
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):237, 61

               
               
               Conread position:110-400
               
               
               Cow position:chr6:67968796-67968506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:204
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):64, 114

               
               
               Conread position:110-434
               
               
               Cow position:chr6:52412672-52412997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:222
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):64, 187

               
               
               Conread position:110-448
               
               
               Cow position:chr6:47799116-47799446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):235, 43

               
               
               Conread position:110-506
               
               
               Cow position:chr6:47574723-47575120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):128, 109

               
               
               Conread position:113-336
               
               
               Cow position:chr6:52025833-52025611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):104, 184

               
               
               Conread position:113-508
               
               
               Cow position:chr6:52901062-52901448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):231, 38

               
               
               Conread position:114-286
               
               
               Cow position:chr6:6226846-6227011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):73, 40

               
               
               Conread position:115-449
               
               
               Cow position:chr6:37783237-37783554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:226
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):168, 29

               
               
               Conread position:116-343
               
               
               Cow position:chr6:49604507-49604722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:117-397
               
               
               Cow position:chr6:21456865-21456583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:198
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):57, 77

               
               
               Conread position:117-449
               
               
               Cow position:chr6:8125157-8125480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:228
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):231, 55

               
               
               Conread position:118-434
               
               
               Cow position:chr6:35993403-35993722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 160

               
               
               Conread position:119-449
               
               
               Cow position:chr6:12668934-12669248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:230
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):97, 50

               
               
               Conread position:119-507
               
               
               Cow position:chr6:65264708-65264321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:274
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):229, 51

               
               
               Conread position:119-508
               
               
               Cow position:chr6:65259640-65259279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:265
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):229, 26

               
               
               Conread position:120-434
               
               
               Cow position:chr6:17334229-17333915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:213
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):59, 173

               
               
               Conread position:120-434
               
               
               Cow position:chr6:47355652-47355961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:219
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):229, 105

               
               
               Conread position:121-312
               
               
               Cow position:chr6:54287909-54288091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):101, 47

               
               
               Conread position:122-471
               
               
               Cow position:chr6:15447378-15447024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 108

               
               
               Conread position:123-448
               
               
               Cow position:chr6:11246595-11246919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):267, 41

               
               
               Conread position:124-452
               
               
               Cow position:chr6:19446092-19446407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:230
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):224, 37

               
               
               Conread position:125-403
               
               
               Cow position:chr6:48442411-48442678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:193
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):95, 73

               
               
               Conread position:126-434
               
               
               Cow position:chr6:50318222-50317906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):92, 74

               
               
               Conread position:127-397
               
               
               Cow position:chr6:60850555-60850279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:184
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):47, 179

               
               
               Conread position:128-404
               
               
               Cow position:chr6:60783706-60783979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):200, 63

               
               
               Conread position:129-306
               
               
               Cow position:chr6:32987161-32986986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:129-394
               
               
               Cow position:chr6:59108779-59109043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):83, 32

               
               
               Conread position:130-449
               
               
               Cow position:chr6:57546378-57546075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):35, 87

               
               
               Conread position:131-420
               
               
               Cow position:chr6:55763693-55763978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:197
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):94, 55

               
               
               Conread position:132-420
               
               
               Cow position:chr6:12543093-12542805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):217, 87

               
               
               Conread position:133-292
               
               
               Cow position:chr6:52705876-52705723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:130
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:133-355
               
               
               Cow position:chr6:19351313-19351099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:133-421
               
               
               Cow position:chr6:47204314-47204601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:203
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):41, 89

               
               
               Conread position:133-448
               
               
               Cow position:chr6:14914398-14914083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:221
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):91, 36

               
               
               Conread position:133-507
               
               
               Cow position:chr6:78071-77707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:245
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):54, 110

               
               
               Conread position:136-506
               
               
               Cow position:chr6:27815625-27815269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):204, 48

               
               
               Conread position:136-506
               
               
               Cow position:chr6:60739859-60740239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):212, 159

               
               
               Conread position:137-447
               
               
               Cow position:chr6:67323161-67323461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:206
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):211, 112

               
               
               Conread position:137-448
               
               
               Cow position:chr6:7128555-7128251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:209
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):207, 53

               
               
               Conread position:137-508
               
               
               Cow position:chr6:17534677-17534306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:256
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):5, 110

               
               
               Conread position:140-449
               
               
               Cow position:chr6:4692136-4691822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:216
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):34, 281

               
               
               Conread position:144-508
               
               
               Cow position:chr6:53673715-53674073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):99, 48

               
               
               Conread position:145-508
               
               
               Cow position:chr6:38453930-38453569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:252
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):15, 170

               
               
               Conread position:145-508
               
               
               Cow position:chr6:55892615-55892966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:257
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):29, 84

               
               
               Conread position:146-440
               
               
               Cow position:chr6:19264641-19264354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):165, 24

               
               
               Conread position:146-448
               
               
               Cow position:chr6:17313589-17313886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:213
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):202, 15

               
               
               Conread position:146-449
               
               
               Cow position:chr6:57571332-57571633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:205
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):89, 14

               
               
               Conread position:147-472
               
               
               Cow position:chr6:36194442-36194771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:234
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):27, 114

               
               
               Conread position:147-480
               
               
               Cow position:chr6:50034860-50034545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:226
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):146, 31

               
               
               Conread position:154-346
               
               
               Cow position:chr6:29266067-29266253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):84, 32

               
               
               Conread position:154-508
               
               
               Cow position:chr6:28156284-28155942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:257
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):51, 37

               
               
               Conread position:157-447
               
               
               Cow position:chr6:19996485-19996765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:208
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):9, 30

               
               
               Conread position:157-449
               
               
               Cow position:chr6:9219138-9219420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:205
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):191, 70

               
               
               Conread position:157-449
               
               
               Cow position:chr6:43135079-43134785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:210
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):47, 99

               
               
               Conread position:157-508
               
               
               Cow position:chr6:60118011-60118373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 133

               
               
               Conread position:159-427
               
               
               Cow position:chr6:38609835-38610100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:190
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):189, 132

               
               
               Conread position:159-493
               
               
               Cow position:chr6:59588543-59588211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:226
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):8, 64

               
               
               Conread position:161-434
               
               
               Cow position:chr6:12845246-12845514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):5, 143

               
               
               Conread position:161-449
               
               
               Cow position:chr6:45388199-45388477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):177, 59

               
               
               Conread position:161-506
               
               
               Cow position:chr6:51840139-51840496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:248
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):81, 59

               
               
               Conread position:161-508
               
               
               Cow position:chr6:47616740-47616409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:235
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):82, 60

               
               
               Conread position:163-408
               
               
               Cow position:chr6:62929367-62929608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):174, 69

               
               
               Conread position:165-368
               
               
               Cow position:chr6:5413692-5413894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:145
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):34, 137

               
               
               Conread position:165-397
               
               
               Cow position:chr6:20206149-20206376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:162
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):50, 33

               
               
               Conread position:165-449
               
               
               Cow position:chr6:582398-582119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:204
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):183, 54

               
               
               Conread position:166-446
               
               
               Cow position:chr6:23402115-23401842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:204
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):182, 53

               
               
               Conread position:168-448
               
               
               Cow position:chr6:33206628-33206888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:194
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):110, 20

               
               
               Conread position:169-507
               
               
               Cow position:chr6:20754408-20754090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:230
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):171, 16

               
               
               Conread position:172-363
               
               
               Cow position:chr6:38233840-38234026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):176, 19

               
               
               Conread position:172-432
               
               
               Cow position:chr6:62669754-62670001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):176, 16

               
               
               Conread position:172-447
               
               
               Cow position:chr6:48803757-48803487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):25, 49

               
               
               Conread position:172-448
               
               
               Cow position:chr6:54573123-54573412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:172-449
               
               
               Cow position:chr6:21234924-21235197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:201
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):176, 47

               
               
               Conread position:172-449
               
               
               Cow position:chr6:36189577-36189851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:192
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):176, 118

               
               
               Conread position:172-508
               
               
               Cow position:chr6:30160203-30160530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:238
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):71, 48

               
               
               Conread position:174-338
               
               
               Cow position:chr6:1510470-1510632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:176-449
               
               
               Cow position:chr6:58597620-58597351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:199
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):173, 43

               
               
               Conread position:177-446
               
               
               Cow position:chr6:60667303-60667561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):39, 120

               
               
               Conread position:180-449
               
               
               Cow position:chr6:10039609-10039877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:186
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):51, 79

               
               
               Conread position:180-473
               
               
               Cow position:chr6:47190050-47189762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:192
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):7, 22

               
               
               Conread position:181-449
               
               
               Cow position:chr6:9719034-9718760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):38, 18

               
               
               Conread position:182-508
               
               
               Cow position:chr6:59603317-59602984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:237
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):167, 37

               
               
               Conread position:183-448
               
               
               Cow position:chr6:26043643-26043892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):112, 37

               
               
               Conread position:185-508
               
               
               Cow position:chr6:36645281-36645605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 82

               
               
               Conread position:187-434
               
               
               Cow position:chr6:66375435-66375194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):162, 38

               
               
               Conread position:191-508
               
               
               Cow position:chr6:56860448-56860751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):52, 29

               
               
               Conread position:192-448
               
               
               Cow position:chr6:1429539-1429792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:193
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):65, 27

               
               
               Conread position:192-452
               
               
               Cow position:chr6:58370653-58370907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):156, 190

               
               
               Conread position:192-506
               
               
               Cow position:chr6:7119710-7119401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:226
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):153, 27

               
               
               Conread position:192-507
               
               
               Cow position:chr6:62371281-62370957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:229
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):23, 110

               
               
               Conread position:192-508
               
               
               Cow position:chr6:20196393-20196095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:234
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):156, 28

               
               
               Conread position:193-397
               
               
               Cow position:chr6:16266620-16266825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):36, 100

               
               
               Conread position:193-440
               
               
               Cow position:chr6:17549080-17548829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):105, 27

               
               
               Conread position:193-508
               
               
               Cow position:chr6:4164268-4163958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):147, 109

               
               
               Conread position:194-434
               
               
               Cow position:chr6:19292700-19292940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):99, 70

               
               
               Conread position:196-449
               
               
               Cow position:chr6:3592305-3592551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:180
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):131, 44

               
               
               Conread position:197-434
               
               
               Cow position:chr6:44867636-44867404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:171
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):19, 34

               
               
               Conread position:197-434
               
               
               Cow position:chr6:59718701-59718935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):129, 21

               
               
               Conread position:198-413
               
               
               Cow position:chr6:54208233-54208017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):31, 11

               
               
               Conread position:198-449
               
               
               Cow position:chr6:17794850-17794610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):150, 38

               
               
               Conread position:198-506
               
               
               Cow position:chr6:35775078-35774772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:214
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):56, 22

               
               
               Conread position:200-448
               
               
               Cow position:chr6:143460-143222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):145, 19

               
               
               Conread position:201-506
               
               
               Cow position:chr6:10487496-10487786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):144, 19

               
               
               Conread position:204-446
               
               
               Cow position:chr6:6673014-6673258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:176
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):18, 93

               
               
               Conread position:206-434
               
               
               Cow position:chr6:51968981-51969215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):79, 14

               
               
               Conread position:206-507
               
               
               Cow position:chr6:37462936-37463235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):142, 14

               
               
               Conread position:210-402
               
               
               Cow position:chr6:54365085-54364887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:144
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):109, 15

               
               
               Conread position:210-443
               
               
               Cow position:chr6:67281812-67282042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:170
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):15, 81

               
               
               Conread position:214-449
               
               
               Cow position:chr6:5330336-5330565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:166
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):134, 26

               
               
               Conread position:214-449
               
               
               Cow position:chr6:33509711-33509940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):112, 79

               
               
               Conread position:215-448
               
               
               Cow position:chr6:2623704-2623926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):182, 79

               
               
               Conread position:215-499
               
               
               Cow position:chr6:40734-40448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):22, 101

               
               
               Conread position:216-508
               
               
               Cow position:chr6:22985935-22985631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:208
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):129, 75

               
               
               Conread position:217-449
               
               
               Cow position:chr6:37395485-37395246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:173
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:219-397
               
               
               Cow position:chr6:23353479-23353651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:129
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:223-434
               
               
               Cow position:chr6:61142634-61142423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):126, 72

               
               
               Conread position:224-448
               
               
               Cow position:chr6:16288121-16287908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:166
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):124, 70

               
               
               Conread position:224-463
               
               
               Cow position:chr6:33929619-33929378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:187
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):125, 82

               
               
               Conread position:225-507
               
               
               Cow position:chr6:54479217-54478939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:201
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):93, 15

               
               
               Conread position:227-448
               
               
               Cow position:chr6:17068715-17068495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:157
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):122, 72

               
               
               Conread position:227-457
               
               
               Cow position:chr6:36284176-36284402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:162
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):96, 72

               
               
               Conread position:237-449
               
               
               Cow position:chr6:18144137-18144351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:158
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):111, 33

               
               
               Conread position:241-508
               
               
               Cow position:chr6:24557830-24558090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:189
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):51, 57

               
               
               Conread position:241-508
               
               
               Cow position:chr6:36454644-36454383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 58

               
               
               Conread position:242-400
               
               
               Cow position:chr6:60468186-60468342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:115
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):107, 71

               
               
               Conread position:242-434
               
               
               Cow position:chr6:59633083-59633274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:141
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):103, 80

               
               
               Conread position:242-456
               
               
               Cow position:chr6:7835865-7836075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:154
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):73, 60

               
               
               Conread position:243-439
               
               
               Cow position:chr6:17527638-17527445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):105, 61

               
               
               Conread position:243-440
               
               
               Cow position:chr6:68652403-68652206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):105, 61

               
               
               Conread position:244-461
               
               
               Cow position:chr6:16352396-16352187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):104, 70

               
               
               Conread position:244-499
               
               
               Cow position:chr6:51294234-51294489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:191
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 60

               
               
               Conread position:248-449
               
               
               Cow position:chr6:19131386-19131584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):100, 11

               
               
               Conread position:248-455
               
               
               Cow position:chr6:2153643-2153439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):100, 45

               
               
               Conread position:248-505
               
               
               Cow position:chr6:54062617-54062872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:184
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):97, 66

               
               
               Conread position:249-449
               
               
               Cow position:chr6:2584898-2585096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:147
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):99, 7

               
               
               Conread position:250-434
               
               
               Cow position:chr6:48468961-48469138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):98, 28

               
               
               Conread position:250-448
               
               
               Cow position:chr6:2078863-2078662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):61, 192

               
               
               Conread position:250-449
               
               
               Cow position:chr6:67451415-67451217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):97, 17

               
               
               Conread position:250-473
               
               
               Cow position:chr6:16733364-16733592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:169
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):59, 123

               
               
               Conread position:250-507
               
               
               Cow position:chr6:55417570-55417303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):90, 49

               
               
               Conread position:253-508
               
               
               Cow position:chr6:510338-510092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):98, 39

               
               
               Conread position:254-507
               
               
               Cow position:chr6:44623568-44623818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):94, 48

               
               
               Conread position:258-508
               
               
               Cow position:chr6:2899606-2899353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 19

               
               
               Conread position:260-420
               
               
               Cow position:chr6:8094324-8094167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):85, 47

               
               
               Conread position:266-447
               
               
               Cow position:chr6:46330892-46331071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):45, 100

               
               
               Conread position:266-500
               
               
               Cow position:chr6:57287687-57287448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:168
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):82, 14

               
               
               Conread position:267-422
               
               
               Cow position:chr6:51086044-51086195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):81, 32

               
               
               Conread position:268-506
               
               
               Cow position:chr6:13718737-13718975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:169
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):82, 34

               
               
               Conread position:268-508
               
               
               Cow position:chr6:34235439-34235201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:186
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 33

               
               
               Conread position:271-507
               
               
               Cow position:chr6:47885044-47884815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):78, 31

               
               
               Conread position:275-451
               
               
               Cow position:chr6:59301806-59301632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):28, 51

               
               
               Conread position:275-508
               
               
               Cow position:chr6:30701425-30701654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:178
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):124, 31

               
               
               Conread position:278-452
               
               
               Cow position:chr6:67806034-67805858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:281-447
               
               
               Cow position:chr6:60451409-60451579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):15, 47

               
               
               Conread position:281-502
               
               
               Cow position:chr6:17349841-17349610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):69, 25

               
               
               Conread position:282-504
               
               
               Cow position:chr6:60503367-60503582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):66, 40

               
               
               Conread position:289-508
               
               
               Cow position:chr6:52705581-52705367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):60, 8

               
               
               Conread position:298-507
               
               
               Cow position:chr6:46676425-46676220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):51, 14

               
               
               Conread position:303-499
               
               
               Cow position:chr6:12421284-12421086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):12, 21

               
               
               Conread position:305-508
               
               
               Cow position:chr6:54127805-54127590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):43, 106

               
               
               Conread position:308-502
               
               
               Cow position:chr6:59496230-59496421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):10, 95

               
               
               Conread position:308-508
               
               
               Cow position:chr6:1475356-1475568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:154
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:309-447
               
               
               Cow position:chr6:7568135-7568276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:106
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:310-448
               
               
               Cow position:chr6:21475740-21475879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:105
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):38, 120

               
               
               Conread position:312-508
               
               
               Cow position:chr6:53938979-53939176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:153
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):37, 149

               
               
               Conread position:317-508
               
               
               Cow position:chr6:54204037-54203841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:145
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):17, 7

               
               
               Conread position:327-508
               
               
               Cow position:chr6:42118732-42118923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:328-505
               
               
               Cow position:chr6:47192493-47192316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):21, 94

               
               
               Conread position:328-508
               
               
               Cow position:chr6:66057803-66057985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):17, 32

               
               
               Conread position:343-508
               
               
               Cow position:chr6:7707181-7707346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):109, 23

               
               
               Conread position:345-508
               
               
               Cow position:chr6:15172614-15172787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:127
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:347-508
               
               
               Cow position:chr6:47772912-47772750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:348-497
               
               
               Cow position:chr6:25224291-25224441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:353-506
               
               
               Cow position:chr6:58765357-58765204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):46, 10

               
               
               Conread position:366-508
               
               
               Cow position:chr6:31225777-31225920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:112
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:11-508
               
               
               Cow position:chr7:58170460-58170957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:505
               
               
               Alignm identity:364
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 210

               
               
               Conread position:12-434
               
               
               Cow position:chr7:15566494-15566893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):336, 82

               
               
               Conread position:12-469
               
               
               Cow position:chr7:62102314-62102769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):104, 93

               
               
               Conread position:15-399
               
               
               Cow position:chr7:4418736-4418354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 48

               
               
               Conread position:15-399
               
               
               Cow position:chr7:37568751-37569155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 324

               
               
               Conread position:15-443
               
               
               Cow position:chr7:9193517-9193087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 39

               
               
               Conread position:15-449
               
               
               Cow position:chr7:33393038-33393465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 63

               
               
               Conread position:16-294
               
               
               Cow position:chr7:15654350-15654072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:201
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):95, 75

               
               
               Conread position:16-294
               
               
               Cow position:chr7:63085289-63085562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:205
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):95, 45

               
               
               Conread position:16-297
               
               
               Cow position:chr7:12994889-12995166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:204
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):158, 49

               
               
               Conread position:16-297
               
               
               Cow position:chr7:39401682-39401966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:206
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):83, 44

               
               
               Conread position:16-312
               
               
               Cow position:chr7:26993341-26993638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):101, 34

               
               
               Conread position:16-312
               
               
               Cow position:chr7:32824528-32824233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 171

               
               
               Conread position:16-317
               
               
               Cow position:chr7:10450252-10449957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):93, 19

               
               
               Conread position:16-320
               
               
               Cow position:chr7:34199049-34199355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:225
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):93, 191

               
               
               Conread position:16-322
               
               
               Cow position:chr7:58362659-58362980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:230
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):83, 43

               
               
               Conread position:16-323
               
               
               Cow position:chr7:43784353-43784640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:215
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):284, 46

               
               
               Conread position:16-323
               
               
               Cow position:chr7:44697626-44697906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:217
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):14, 39

               
               
               Conread position:16-324
               
               
               Cow position:chr7:40570992-40571306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:216
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):93, 269

               
               
               Conread position:16-327
               
               
               Cow position:chr7:40213063-40213389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:234
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):52, 245

               
               
               Conread position:16-338
               
               
               Cow position:chr7:35652352-35652029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 45

               
               
               Conread position:16-338
               
               
               Cow position:chr7:58614519-58614832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:222
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):93, 49

               
               
               Conread position:16-346
               
               
               Cow position:chr7:7476721-7476396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:233
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):63, 5

               
               
               Conread position:16-346
               
               
               Cow position:chr7:21573010-21573344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 148

               
               
               Conread position:16-346
               
               
               Cow position:chr7:54089926-54090260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:238
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):12, 285

               
               
               Conread position:16-352
               
               
               Cow position:chr7:42431549-42431887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 54

               
               
               Conread position:16-357
               
               
               Cow position:chr7:18639741-18639398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:220
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):101, 295

               
               
               Conread position:16-363
               
               
               Cow position:chr7:27329720-27330069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:222
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):101, 294

               
               
               Conread position:16-363
               
               
               Cow position:chr7:53268918-53269269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:240
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):95, 12

               
               
               Conread position:16-364
               
               
               Cow position:chr7:40758521-40758162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 63

               
               
               Conread position:16-367
               
               
               Cow position:chr7:65815087-65815440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):101, 276

               
               
               Conread position:16-368
               
               
               Cow position:chr7:24778387-24778044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 76

               
               
               Conread position:16-369
               
               
               Cow position:chr7:53361655-53361313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:254
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):27, 155

               
               
               Conread position:16-373
               
               
               Cow position:chr7:19925718-19925360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:233
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):101, 183

               
               
               Conread position:16-373
               
               
               Cow position:chr7:21846328-21845971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:232
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):90, 271

               
               
               Conread position:16-373
               
               
               Cow position:chr7:33335846-33336202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:227
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):86, 100

               
               
               Conread position:16-376
               
               
               Cow position:chr7:20415579-20415206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:16-378
               
               
               Cow position:chr7:39161437-39161798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:250
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):93, 46

               
               
               Conread position:16-393
               
               
               Cow position:chr7:39169626-39170009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 290

               
               
               Conread position:16-395
               
               
               Cow position:chr7:39164118-39164490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:255
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):94, 17

               
               
               Conread position:16-397
               
               
               Cow position:chr7:14005599-14005984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:272
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):93, 49

               
               
               Conread position:16-397
               
               
               Cow position:chr7:32283640-32284024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 38

               
               
               Conread position:16-397
               
               
               Cow position:chr7:40121174-40121575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:279
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):15, 175

               
               
               Conread position:16-397
               
               
               Cow position:chr7:44590118-44589755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 47

               
               
               Conread position:16-397
               
               
               Cow position:chr7:46116928-46116536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 182

               
               
               Conread position:16-397
               
               
               Cow position:chr7:64229176-64228789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 74

               
               
               Conread position:16-404
               
               
               Cow position:chr7:67816621-67817009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 167

               
               
               Conread position:16-405
               
               
               Cow position:chr7:10373742-10373343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 323

               
               
               Conread position:16-408
               
               
               Cow position:chr7:21526681-21526302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:270
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):93, 218

               
               
               Conread position:16-412
               
               
               Cow position:chr7:39147521-39147922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 369

               
               
               Conread position:16-414
               
               
               Cow position:chr7:57911332-57911733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:274
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):102, 238

               
               
               Conread position:16-422
               
               
               Cow position:chr7:19267645-19267241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 282

               
               
               Conread position:16-422
               
               
               Cow position:chr7:25703499-25703096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 56

               
               
               Conread position:16-426
               
               
               Cow position:chr7:1366731-1366317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:266
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):83, 277

               
               
               Conread position:16-427
               
               
               Cow position:chr7:21649827-21650233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 62

               
               
               Conread position:16-427
               
               
               Cow position:chr7:30276457-30276869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 209

               
               
               Conread position:16-429
               
               
               Cow position:chr7:37142639-37142237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 10

               
               
               Conread position:16-432
               
               
               Cow position:chr7:60120734-60121164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:302
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):50, 135

               
               
               Conread position:16-434
               
               
               Cow position:chr7:1792768-1792307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:318
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):50, 293

               
               
               Conread position:16-434
               
               
               Cow position:chr7:23457092-23456680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 187

               
               
               Conread position:16-434
               
               
               Cow position:chr7:25415123-25415534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:288
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):93, 46

               
               
               Conread position:16-434
               
               
               Cow position:chr7:31094617-31094207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:282
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):88, 38

               
               
               Conread position:16-434
               
               
               Cow position:chr7:34433555-34433141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 110

               
               
               Conread position:16-434
               
               
               Cow position:chr7:38081884-38082297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 29

               
               
               Conread position:16-434
               
               
               Cow position:chr7:40953140-40952724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 208

               
               
               Conread position:16-434
               
               
               Cow position:chr7:59691800-59692214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 45

               
               
               Conread position:16-435
               
               
               Cow position:chr7:8868549-8868969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:290
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):89, 21

               
               
               Conread position:16-437
               
               
               Cow position:chr7:24767506-24767086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 103

               
               
               Conread position:16-440
               
               
               Cow position:chr7:28563656-28563243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 12

               
               
               Conread position:16-443
               
               
               Cow position:chr7:2172481-2172900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 170

               
               
               Conread position:16-447
               
               
               Cow position:chr7:51019520-51019932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):206, 88

               
               
               Conread position:16-448
               
               
               Cow position:chr7:4583011-4582575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 155

               
               
               Conread position:16-448
               
               
               Cow position:chr7:13593499-13593923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 160

               
               
               Conread position:16-448
               
               
               Cow position:chr7:39129857-39129453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):99, 38

               
               
               Conread position:16-448
               
               
               Cow position:chr7:40067374-40067815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 299

               
               
               Conread position:16-448
               
               
               Cow position:chr7:44454541-44454125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 77

               
               
               Conread position:16-448
               
               
               Cow position:chr7:63749757-63749321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 212

               
               
               Conread position:16-449
               
               
               Cow position:chr7:9146370-9146798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):210, 92

               
               
               Conread position:16-449
               
               
               Cow position:chr7:17756769-17757191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 38

               
               
               Conread position:16-449
               
               
               Cow position:chr7:17816483-17816905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):332, 66

               
               
               Conread position:16-449
               
               
               Cow position:chr7:23569016-23568580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 209

               
               
               Conread position:16-449
               
               
               Cow position:chr7:27079364-27079785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:293
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):329, 37

               
               
               Conread position:16-449
               
               
               Cow position:chr7:28916799-28917247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 104

               
               
               Conread position:16-449
               
               
               Cow position:chr7:36665053-36665477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 208

               
               
               Conread position:16-449
               
               
               Cow position:chr7:39518025-39518439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 176

               
               
               Conread position:16-449
               
               
               Cow position:chr7:47775594-47776017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 27

               
               
               Conread position:16-449
               
               
               Cow position:chr7:57259306-57258867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 196

               
               
               Conread position:16-451
               
               
               Cow position:chr7:20176975-20176551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 44

               
               
               Conread position:16-451
               
               
               Cow position:chr7:33697701-33698112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 21

               
               
               Conread position:16-451
               
               
               Cow position:chr7:59688261-59688696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 100

               
               
               Conread position:16-452
               
               
               Cow position:chr7:53988785-53989209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):237, 149

               
               
               Conread position:16-453
               
               
               Cow position:chr7:51909856-51910279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:305
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):93, 45

               
               
               Conread position:16-463
               
               
               Cow position:chr7:64364803-64364357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):97, 41

               
               
               Conread position:16-466
               
               
               Cow position:chr7:19798208-19797759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 164

               
               
               Conread position:16-471
               
               
               Cow position:chr7:25685313-25684867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:309
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):93, 126

               
               
               Conread position:16-473
               
               
               Cow position:chr7:23257127-23256675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):106, 38

               
               
               Conread position:16-473
               
               
               Cow position:chr7:33772341-33772795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 208

               
               
               Conread position:16-473
               
               
               Cow position:chr7:34412558-34412097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):116, 19

               
               
               Conread position:16-473
               
               
               Cow position:chr7:45592764-45593211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 51

               
               
               Conread position:16-504
               
               
               Cow position:chr7:3336815-3336332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:498
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):332, 66

               
               
               Conread position:16-504
               
               
               Cow position:chr7:67819845-67820322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:496
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 49

               
               
               Conread position:16-505
               
               
               Cow position:chr7:26196065-26195596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:498
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 67

               
               
               Conread position:16-505
               
               
               Cow position:chr7:67839059-67839554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:502
               
               
               Alignm identity:375
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 19

               
               
               Conread position:16-506
               
               
               Cow position:chr7:7096321-7095833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:342
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):114, 157

               
               
               Conread position:16-506
               
               
               Cow position:chr7:19881317-19880833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:498
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 98

               
               
               Conread position:16-506
               
               
               Cow position:chr7:19982110-19981637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:497
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 29

               
               
               Conread position:16-506
               
               
               Cow position:chr7:43234728-43234232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 218

               
               
               Conread position:16-506
               
               
               Cow position:chr7:53381922-53382412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:505
               
               
               Alignm identity:325
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):84, 35

               
               
               Conread position:16-507
               
               
               Cow position:chr7:19466537-19466026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:521
               
               
               Alignm identity:360
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):170, 92

               
               
               Conread position:16-508
               
               
               Cow position:chr7:1261750-1262243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:368
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 11

               
               
               Conread position:16-508
               
               
               Cow position:chr7:4130068-4129554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:519
               
               
               Alignm identity:362
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 216

               
               
               Conread position:16-508
               
               
               Cow position:chr7:6057853-6058339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:504
               
               
               Alignm identity:357
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 211

               
               
               Conread position:16-508
               
               
               Cow position:chr7:10099613-10099146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:498
               
               
               Alignm identity:331
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):99, 29

               
               
               Conread position:16-508
               
               
               Cow position:chr7:14542327-14541850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:502
               
               
               Alignm identity:333
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):95, 136

               
               
               Conread position:16-508
               
               
               Cow position:chr7:27388255-27387762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:502
               
               
               Alignm identity:369
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 45

               
               
               Conread position:16-508
               
               
               Cow position:chr7:37361608-37362085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:497
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 158

               
               
               Conread position:16-508
               
               
               Cow position:chr7:48243403-48243871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:494
               
               
               Alignm identity:354
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):333, 93

               
               
               Conread position:17-413
               
               
               Cow position:chr7:45927426-45927045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 35

               
               
               Conread position:17-415
               
               
               Cow position:chr7:39930006-39930406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 142

               
               
               Conread position:17-448
               
               
               Cow position:chr7:5250188-5249759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 77

               
               
               Conread position:17-449
               
               
               Cow position:chr7:25512396-25511968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 172

               
               
               Conread position:17-449
               
               
               Cow position:chr7:40709834-40710284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 150

               
               
               Conread position:17-449
               
               
               Cow position:chr7:44596971-44596546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 98

               
               
               Conread position:17-449
               
               
               Cow position:chr7:45157858-45158273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 116

               
               
               Conread position:17-449
               
               
               Cow position:chr7:58967000-58967423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:294
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):92, 157

               
               
               Conread position:17-451
               
               
               Cow position:chr7:64948841-64949265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 97

               
               
               Conread position:17-455
               
               
               Cow position:chr7:47547120-47547570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 295

               
               
               Conread position:17-484
               
               
               Cow position:chr7:40321220-40321690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):267, 44

               
               
               Conread position:17-499
               
               
               Cow position:chr7:25445125-25445601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:488
               
               
               Alignm identity:359
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 131

               
               
               Conread position:17-507
               
               
               Cow position:chr7:14520312-14519810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:516
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 140

               
               
               Conread position:17-508
               
               
               Cow position:chr7:42296344-42295858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 157

               
               
               Conread position:18-308
               
               
               Cow position:chr7:34715964-34716266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:218
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):54, 156

               
               
               Conread position:18-340
               
               
               Cow position:chr7:22727616-22727946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:233
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):141, 106

               
               
               Conread position:18-343
               
               
               Cow position:chr7:3728820-3729136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 36

               
               
               Conread position:18-388
               
               
               Cow position:chr7:26888231-26887861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:264
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):91, 27

               
               
               Conread position:18-423
               
               
               Cow position:chr7:18964654-18965039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 157

               
               
               Conread position:18-423
               
               
               Cow position:chr7:26485309-26485701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):133, 52

               
               
               Conread position:18-447
               
               
               Cow position:chr7:21009231-21008780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:296
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):83, 222

               
               
               Conread position:18-448
               
               
               Cow position:chr7:20534608-20535027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):156, 86

               
               
               Conread position:18-449
               
               
               Cow position:chr7:18388670-18388243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 37

               
               
               Conread position:18-449
               
               
               Cow position:chr7:47513963-47513529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 85

               
               
               Conread position:18-449
               
               
               Cow position:chr7:49750853-49751282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:299
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):93, 36

               
               
               Conread position:18-455
               
               
               Cow position:chr7:46823406-46823832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 43

               
               
               Conread position:18-485
               
               
               Cow position:chr7:19399947-19399485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):99, 48

               
               
               Conread position:18-508
               
               
               Cow position:chr7:31171221-31170726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:502
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 63

               
               
               Conread position:19-451
               
               
               Cow position:chr7:61551631-61552078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 102

               
               
               Conread position:19-506
               
               
               Cow position:chr7:1733469-1732991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:497
               
               
               Alignm identity:326
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):70, 41

               
               
               Conread position:19-508
               
               
               Cow position:chr7:11176978-11176502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:505
               
               
               Alignm identity:354
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 200

               
               
               Conread position:20-401
               
               
               Cow position:chr7:55706645-55706278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:247
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):95, 34

               
               
               Conread position:21-449
               
               
               Cow position:chr7:40074423-40074840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:294
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):90, 129

               
               
               Conread position:21-507
               
               
               Cow position:chr7:32791419-32791922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:513
               
               
               Alignm identity:332
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):24, 55

               
               
               Conread position:21-508
               
               
               Cow position:chr7:20918602-20918130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:500
               
               
               Alignm identity:352
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 60

               
               
               Conread position:22-448
               
               
               Cow position:chr7:41328297-41327879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):323, 16

               
               
               Conread position:22-506
               
               
               Cow position:chr7:53986258-53985790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:494
               
               
               Alignm identity:330
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):43, 123

               
               
               Conread position:26-367
               
               
               Cow position:chr7:39042339-39042671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 14

               
               
               Conread position:27-289
               
               
               Cow position:chr7:68753954-68753689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:189
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):41, 5

               
               
               Conread position:27-457
               
               
               Cow position:chr7:9136577-9137001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 34

               
               
               Conread position:28-439
               
               
               Cow position:chr7:10943117-10942718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:287
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):81, 50

               
               
               Conread position:30-424
               
               
               Cow position:chr7:39149675-39150081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:30-434
               
               
               Cow position:chr7:47932058-47931655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 145

               
               
               Conread position:33-477
               
               
               Cow position:chr7:24220413-24220862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 86

               
               
               Conread position:34-506
               
               
               Cow position:chr7:11066216-11066702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:493
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 43

               
               
               Conread position:34-508
               
               
               Cow position:chr7:51321459-51321946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:498
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 289

               
               
               Conread position:35-502
               
               
               Cow position:chr7:37364539-37364991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:306
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):47, 129

               
               
               Conread position:35-506
               
               
               Cow position:chr7:40192482-40192961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:489
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):143, 73

               
               
               Conread position:36-397
               
               
               Cow position:chr7:63378138-63378497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:237
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):73, 21

               
               
               Conread position:36-506
               
               
               Cow position:chr7:20537107-20537586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 155

               
               
               Conread position:38-508
               
               
               Cow position:chr7:30932228-30931750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:491
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 42

               
               
               Conread position:40-443
               
               
               Cow position:chr7:65122090-65122482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 165

               
               
               Conread position:41-448
               
               
               Cow position:chr7:23646352-23646766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 184

               
               
               Conread position:44-448
               
               
               Cow position:chr7:31694863-31694484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:270
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):304, 23

               
               
               Conread position:44-449
               
               
               Cow position:chr7:16917813-16918207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:268
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):178, 61

               
               
               Conread position:45-316
               
               
               Cow position:chr7:56887026-56886759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:47-359
               
               
               Cow position:chr7:59713220-59713535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:223
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):60, 180

               
               
               Conread position:47-368
               
               
               Cow position:chr7:19096275-19095953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:234
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):22, 27

               
               
               Conread position:47-369
               
               
               Cow position:chr7:65689775-65689457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:230
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):53, 180

               
               
               Conread position:49-438
               
               
               Cow position:chr7:10943795-10943415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:273
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):56, 175

               
               
               Conread position:49-449
               
               
               Cow position:chr7:48722148-48721750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 175

               
               
               Conread position:50-396
               
               
               Cow position:chr7:34017860-34018184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:240
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):61, 79

               
               
               Conread position:54-290
               
               
               Cow position:chr7:57610516-57610755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):16, 170

               
               
               Conread position:54-381
               
               
               Cow position:chr7:58427858-58428166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:232
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):57, 100

               
               
               Conread position:54-499
               
               
               Cow position:chr7:40894283-40894747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 114

               
               
               Conread position:56-450
               
               
               Cow position:chr7:33385698-33386078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 118

               
               
               Conread position:57-340
               
               
               Cow position:chr7:26501691-26501417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:199
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):54, 8

               
               
               Conread position:57-390
               
               
               Cow position:chr7:60121281-60121620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:225
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):42, 95

               
               
               Conread position:57-433
               
               
               Cow position:chr7:3311610-3311979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):115, 37

               
               
               Conread position:57-448
               
               
               Cow position:chr7:40008583-40008984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:60-451
               
               
               Cow position:chr7:3322566-3322950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:272
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):49, 87

               
               
               Conread position:63-368
               
               
               Cow position:chr7:3134676-3134361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 270

               
               
               Conread position:65-396
               
               
               Cow position:chr7:59148562-59148883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:226
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):44, 62

               
               
               Conread position:65-448
               
               
               Cow position:chr7:26838438-26838806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:259
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):86, 43

               
               
               Conread position:65-449
               
               
               Cow position:chr7:42894223-42894605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:269
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):10, 95

               
               
               Conread position:65-508
               
               
               Cow position:chr7:57537751-57537305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 161

               
               
               Conread position:66-284
               
               
               Cow position:chr7:24213655-24213877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:162
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:66-434
               
               
               Cow position:chr7:37951955-37952320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 16

               
               
               Conread position:66-502
               
               
               Cow position:chr7:11714653-11714215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:294
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):43, 156

               
               
               Conread position:66-506
               
               
               Cow position:chr7:600118-600546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):282, 42

               
               
               Conread position:66-508
               
               
               Cow position:chr7:36830437-36830866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 66

               
               
               Conread position:66-508
               
               
               Cow position:chr7:53612920-53613346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:294
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):43, 155

               
               
               Conread position:67-365
               
               
               Cow position:chr7:27349449-27349166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:213
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):281, 46

               
               
               Conread position:67-457
               
               
               Cow position:chr7:41293972-41293583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 123

               
               
               Conread position:67-504
               
               
               Cow position:chr7:25015344-25014921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):113, 42

               
               
               Conread position:67-508
               
               
               Cow position:chr7:18858116-18858552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 159

               
               
               Conread position:67-508
               
               
               Cow position:chr7:53744127-53743686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 160

               
               
               Conread position:68-396
               
               
               Cow position:chr7:66180024-66179689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 159

               
               
               Conread position:68-506
               
               
               Cow position:chr7:26665781-26665357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 39

               
               
               Conread position:70-397
               
               
               Cow position:chr7:34223469-34223797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 34

               
               
               Conread position:70-397
               
               
               Cow position:chr7:40510413-40510746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:228
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):47, 194

               
               
               Conread position:70-403
               
               
               Cow position:chr7:17967340-17967016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:243
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):39, 95

               
               
               Conread position:70-441
               
               
               Cow position:chr7:33298640-33298295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:254
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):266, 9

               
               
               Conread position:70-443
               
               
               Cow position:chr7:6706075-6706450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 120

               
               
               Conread position:70-468
               
               
               Cow position:chr7:48548081-48547686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 22

               
               
               Conread position:70-504
               
               
               Cow position:chr7:25023679-25023259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):110, 39

               
               
               Conread position:70-508
               
               
               Cow position:chr7:44049586-44049163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 121

               
               
               Conread position:70-508
               
               
               Cow position:chr7:53786180-53785756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:300
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):39, 61

               
               
               Conread position:70-508
               
               
               Cow position:chr7:64573282-64572827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 120

               
               
               Conread position:71-346
               
               
               Cow position:chr7:24718755-24718480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:196
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):38, 54

               
               
               Conread position:71-357
               
               
               Cow position:chr7:34568979-34569251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):40, 154

               
               
               Conread position:71-360
               
               
               Cow position:chr7:41445141-41445429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:207
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):41, 110

               
               
               Conread position:71-397
               
               
               Cow position:chr7:40405631-40405948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:225
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):43, 102

               
               
               Conread position:71-405
               
               
               Cow position:chr7:8776978-8777320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:233
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):38, 88

               
               
               Conread position:71-423
               
               
               Cow position:chr7:20147552-20147209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):180, 34

               
               
               Conread position:71-434
               
               
               Cow position:chr7:33719832-33720175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:258
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):38, 48

               
               
               Conread position:71-449
               
               
               Cow position:chr7:147190-147571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 64

               
               
               Conread position:71-449
               
               
               Cow position:chr7:3256564-3256189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:261
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):34, 39

               
               
               Conread position:71-449
               
               
               Cow position:chr7:37455101-37455474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:264
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):19, 15

               
               
               Conread position:71-450
               
               
               Cow position:chr7:25867726-25867343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 122

               
               
               Conread position:71-469
               
               
               Cow position:chr7:25860409-25860029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:267
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):38, 117

               
               
               Conread position:71-482
               
               
               Cow position:chr7:45955706-45956118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 154

               
               
               Conread position:71-487
               
               
               Cow position:chr7:21197600-21197189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 53

               
               
               Conread position:71-506
               
               
               Cow position:chr7:45748053-45747644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 34

               
               
               Conread position:71-508
               
               
               Cow position:chr7:20180-20623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 156

               
               
               Conread position:71-508
               
               
               Cow position:chr7:40263874-40263439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:301
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):37, 156

               
               
               Conread position:72-346
               
               
               Cow position:chr7:12212826-12212548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:200
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):37, 214

               
               
               Conread position:72-449
               
               
               Cow position:chr7:19230721-19230357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:265
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):40, 70

               
               
               Conread position:72-480
               
               
               Cow position:chr7:23177319-23177726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):171, 22

               
               
               Conread position:73-286
               
               
               Cow position:chr7:55316692-55316482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):39, 105

               
               
               Conread position:73-342
               
               
               Cow position:chr7:14079387-14079120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):42, 153

               
               
               Conread position:73-449
               
               
               Cow position:chr7:17713683-17713315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 9

               
               
               Conread position:74-349
               
               
               Cow position:chr7:39529221-39528937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:196
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):36, 232

               
               
               Conread position:74-369
               
               
               Cow position:chr7:1558518-1558809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:213
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):35, 219

               
               
               Conread position:74-431
               
               
               Cow position:chr7:3283147-3283497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 20

               
               
               Conread position:75-449
               
               
               Cow position:chr7:16022085-16022451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 99

               
               
               Conread position:75-466
               
               
               Cow position:chr7:11872815-11872432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 151

               
               
               Conread position:75-508
               
               
               Cow position:chr7:68088408-68088839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:300
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):34, 119

               
               
               Conread position:76-448
               
               
               Cow position:chr7:48406716-48406338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 232

               
               
               Conread position:77-446
               
               
               Cow position:chr7:12408455-12408088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 155

               
               
               Conread position:77-448
               
               
               Cow position:chr7:27283464-27283829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 154

               
               
               Conread position:77-505
               
               
               Cow position:chr7:54513636-54513178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:315
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):32, 155

               
               
               Conread position:77-506
               
               
               Cow position:chr7:20081278-20080862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 169

               
               
               Conread position:77-506
               
               
               Cow position:chr7:43215297-43215726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 146

               
               
               Conread position:77-508
               
               
               Cow position:chr7:7106997-7106567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 54

               
               
               Conread position:78-281
               
               
               Cow position:chr7:20779937-20780143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:145
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:78-359
               
               
               Cow position:chr7:44095155-44094869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:209
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):31, 12

               
               
               Conread position:78-375
               
               
               Cow position:chr7:50203236-50202931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):40, 47

               
               
               Conread position:78-464
               
               
               Cow position:chr7:31881474-31881831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 61

               
               
               Conread position:78-485
               
               
               Cow position:chr7:59245749-59246147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 147

               
               
               Conread position:78-505
               
               
               Cow position:chr7:40406448-40406874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:295
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):13, 76

               
               
               Conread position:78-508
               
               
               Cow position:chr7:53053620-53053172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:309
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):31, 147

               
               
               Conread position:79-286
               
               
               Cow position:chr7:57161936-57162147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:79-391
               
               
               Cow position:chr7:34669910-34670211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:211
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):255, 15

               
               
               Conread position:79-508
               
               
               Cow position:chr7:64003262-64003676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):266, 30

               
               
               Conread position:80-466
               
               
               Cow position:chr7:7507350-7507722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 44

               
               
               Conread position:81-449
               
               
               Cow position:chr7:38060644-38060270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 224

               
               
               Conread position:82-298
               
               
               Cow position:chr7:10345643-10345417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:158
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:82-433
               
               
               Cow position:chr7:3026933-3026580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:245
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):27, 217

               
               
               Conread position:84-449
               
               
               Cow position:chr7:39094119-39093770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:244
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):18, 25

               
               
               Conread position:84-508
               
               
               Cow position:chr7:25104157-25104584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 138

               
               
               Conread position:89-321
               
               
               Cow position:chr7:14712396-14712172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):20, 66

               
               
               Conread position:89-434
               
               
               Cow position:chr7:50066315-50065974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:235
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):20, 132

               
               
               Conread position:89-449
               
               
               Cow position:chr7:38696645-38696998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 136

               
               
               Conread position:89-463
               
               
               Cow position:chr7:39158475-39158855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:252
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):20, 34

               
               
               Conread position:90-294
               
               
               Cow position:chr7:54784011-54783815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):19, 84

               
               
               Conread position:90-449
               
               
               Cow position:chr7:1761517-1761887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 53

               
               
               Conread position:90-508
               
               
               Cow position:chr7:23131395-23131809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 137

               
               
               Conread position:90-508
               
               
               Cow position:chr7:59075651-59076064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:285
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):127, 96

               
               
               Conread position:91-346
               
               
               Cow position:chr7:61765113-61765369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:178
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):24, 99

               
               
               Conread position:91-447
               
               
               Cow position:chr7:33280186-33279843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:240
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):306, 17

               
               
               Conread position:91-451
               
               
               Cow position:chr7:44986457-44986811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 80

               
               
               Conread position:92-448
               
               
               Cow position:chr7:64135663-64135312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 97

               
               
               Conread position:92-449
               
               
               Cow position:chr7:35286828-35286484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:252
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):137, 18

               
               
               Conread position:95-461
               
               
               Cow position:chr7:11011887-11011510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:262
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):75, 163

               
               
               Conread position:96-402
               
               
               Cow position:chr7:45709404-45709095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):20, 130

               
               
               Conread position:96-447
               
               
               Cow position:chr7:9948-10303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:242
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):13, 53

               
               
               Conread position:96-474
               
               
               Cow position:chr7:58773708-58774065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:246
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):9, 104

               
               
               Conread position:96-505
               
               
               Cow position:chr7:26466555-26466953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 100

               
               
               Conread position:97-411
               
               
               Cow position:chr7:25960278-25960584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:222
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):10, 54

               
               
               Conread position:97-508
               
               
               Cow position:chr7:68523023-68522631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:269
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):13, 123

               
               
               Conread position:98-300
               
               
               Cow position:chr7:54699885-54700086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):11, 127

               
               
               Conread position:98-403
               
               
               Cow position:chr7:12202106-12201803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:219
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):201, 10

               
               
               Conread position:98-503
               
               
               Cow position:chr7:63946764-63946370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):250, 10

               
               
               Conread position:99-449
               
               
               Cow position:chr7:13963010-13963369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:250
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):10, 75

               
               
               Conread position:100-397
               
               
               Cow position:chr7:43103646-43103330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:224
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):14, 216

               
               
               Conread position:100-449
               
               
               Cow position:chr7:37697612-37697961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:248
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):9, 93

               
               
               Conread position:102-300
               
               
               Cow position:chr7:40311534-40311331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):13, 45

               
               
               Conread position:104-391
               
               
               Cow position:chr7:37818033-37817755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:202
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):55, 92

               
               
               Conread position:108-449
               
               
               Cow position:chr7:56347998-56347669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:230
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):240, 64

               
               
               Conread position:110-449
               
               
               Cow position:chr7:25263191-25263524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):114, 189

               
               
               Conread position:110-449
               
               
               Cow position:chr7:51039252-51039587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:230
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):114, 40

               
               
               Conread position:111-360
               
               
               Cow position:chr7:40991527-40991771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):234, 108

               
               
               Conread position:111-376
               
               
               Cow position:chr7:59941443-59941710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:186
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):139, 79

               
               
               Conread position:112-275
               
               
               Cow position:chr7:23057906-23057742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):60, 110

               
               
               Conread position:112-429
               
               
               Cow position:chr7:10897102-10896802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):43, 61

               
               
               Conread position:113-423
               
               
               Cow position:chr7:22152976-22153289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):118, 196

               
               
               Conread position:115-363
               
               
               Cow position:chr7:51249048-51248795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:179
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):52, 140

               
               
               Conread position:115-388
               
               
               Cow position:chr7:32372684-32372951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):230, 106

               
               
               Conread position:115-411
               
               
               Cow position:chr7:20220014-20219722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:207
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):57, 109

               
               
               Conread position:115-443
               
               
               Cow position:chr7:32079284-32079601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):233, 38

               
               
               Conread position:115-469
               
               
               Cow position:chr7:67873007-67873367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:241
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):59, 192

               
               
               Conread position:115-508
               
               
               Cow position:chr7:31315146-31315534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):230, 71

               
               
               Conread position:116-432
               
               
               Cow position:chr7:25195361-25195680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:227
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):60, 173

               
               
               Conread position:120-399
               
               
               Cow position:chr7:43894654-43894934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):54, 157

               
               
               Conread position:120-404
               
               
               Cow position:chr7:66335929-66335652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:197
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):8, 109

               
               
               Conread position:120-448
               
               
               Cow position:chr7:51884675-51884353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:218
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):54, 144

               
               
               Conread position:120-449
               
               
               Cow position:chr7:31497548-31497866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:220
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):25, 73

               
               
               Conread position:121-508
               
               
               Cow position:chr7:48648793-48648408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:259
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):121, 99

               
               
               Conread position:123-449
               
               
               Cow position:chr7:41464296-41464622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:231
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):49, 146

               
               
               Conread position:123-505
               
               
               Cow position:chr7:58489912-58490289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:262
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):5, 35

               
               
               Conread position:126-389
               
               
               Cow position:chr7:8375112-8375362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):5, 35

               
               
               Conread position:126-434
               
               
               Cow position:chr7:22651990-22651689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):77, 175

               
               
               Conread position:129-449
               
               
               Cow position:chr7:9800192-9800511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:225
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):11, 47

               
               
               Conread position:131-370
               
               
               Cow position:chr7:44942300-44942531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:172
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):217, 21

               
               
               Conread position:131-508
               
               
               Cow position:chr7:2897002-2897377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 181

               
               
               Conread position:132-395
               
               
               Cow position:chr7:40051917-40051658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):42, 99

               
               
               Conread position:132-443
               
               
               Cow position:chr7:21122417-21122109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):34, 16

               
               
               Conread position:132-508
               
               
               Cow position:chr7:4764683-4765072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:266
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):42, 105

               
               
               Conread position:137-336
               
               
               Cow position:chr7:35742558-35742360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:138-508
               
               
               Cow position:chr7:24667240-24667599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:259
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):29, 86

               
               
               Conread position:140-368
               
               
               Cow position:chr7:36714784-36714553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):34, 135

               
               
               Conread position:140-508
               
               
               Cow position:chr7:68932161-68932531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:269
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):209, 65

               
               
               Conread position:145-332
               
               
               Cow position:chr7:27550623-27550434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:141
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):29, 92

               
               
               Conread position:145-506
               
               
               Cow position:chr7:12755293-12754943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 79

               
               
               Conread position:147-443
               
               
               Cow position:chr7:48205242-48204951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:200
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):27, 77

               
               
               Conread position:147-449
               
               
               Cow position:chr7:2579387-2579081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 165

               
               
               Conread position:147-508
               
               
               Cow position:chr7:47172852-47172496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 76

               
               
               Conread position:148-463
               
               
               Cow position:chr7:8826675-8826983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:217
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):26, 53

               
               
               Conread position:149-314
               
               
               Cow position:chr7:51666589-51666425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):55, 82

               
               
               Conread position:155-508
               
               
               Cow position:chr7:14524345-14524704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):193, 65

               
               
               Conread position:156-508
               
               
               Cow position:chr7:34214461-34214806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 44

               
               
               Conread position:157-304
               
               
               Cow position:chr7:27359607-27359462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:108
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:157-360
               
               
               Cow position:chr7:5300524-5300326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:148
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):58, 84

               
               
               Conread position:157-364
               
               
               Cow position:chr7:22828551-22828342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):123, 193

               
               
               Conread position:157-413
               
               
               Cow position:chr7:14481924-14482186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:179
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):23, 143

               
               
               Conread position:157-449
               
               
               Cow position:chr7:57660295-57660008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:204
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):52, 28

               
               
               Conread position:158-441
               
               
               Cow position:chr7:42593405-42593133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):191, 14

               
               
               Conread position:159-452
               
               
               Cow position:chr7:58351086-58350807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):56, 8

               
               
               Conread position:159-452
               
               
               Cow position:chr7:58923264-58923557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:212
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):7, 64

               
               
               Conread position:159-508
               
               
               Cow position:chr7:23251688-23251351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):189, 27

               
               
               Conread position:161-408
               
               
               Cow position:chr7:21166376-21166127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:174
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):68, 82

               
               
               Conread position:161-434
               
               
               Cow position:chr7:5212607-5212335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:197
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):90, 139

               
               
               Conread position:161-449
               
               
               Cow position:chr7:18188350-18188073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:204
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):236, 59

               
               
               Conread position:163-447
               
               
               Cow position:chr7:23636581-23636857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:207
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):185, 60

               
               
               Conread position:165-448
               
               
               Cow position:chr7:20051589-20051319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:191
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):183, 88

               
               
               Conread position:165-460
               
               
               Cow position:chr7:48638444-48638741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:205
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):52, 7

               
               
               Conread position:172-321
               
               
               Cow position:chr7:33810565-33810714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:109
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):138, 88

               
               
               Conread position:172-396
               
               
               Cow position:chr7:24851121-24850899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):71, 25

               
               
               Conread position:172-399
               
               
               Cow position:chr7:46106003-46105777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:170
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):173, 119

               
               
               Conread position:172-422
               
               
               Cow position:chr7:38263552-38263802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:175
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):39, 49

               
               
               Conread position:172-434
               
               
               Cow position:chr7:7506253-7505985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):79, 48

               
               
               Conread position:172-449
               
               
               Cow position:chr7:34974197-34974465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:197
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):176, 31

               
               
               Conread position:173-502
               
               
               Cow position:chr7:68516796-68516483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:239
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):172, 64

               
               
               Conread position:174-448
               
               
               Cow position:chr7:49903660-49903927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:188
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):139, 46

               
               
               Conread position:174-449
               
               
               Cow position:chr7:15559576-15559843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:187
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):175, 44

               
               
               Conread position:176-447
               
               
               Cow position:chr7:5853247-5853502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:197
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):221, 15

               
               
               Conread position:176-448
               
               
               Cow position:chr7:33514773-33515045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):161, 148

               
               
               Conread position:177-376
               
               
               Cow position:chr7:49783488-49783287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):44, 120

               
               
               Conread position:178-485
               
               
               Cow position:chr7:46103412-46103716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:211
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):64, 42

               
               
               Conread position:179-423
               
               
               Cow position:chr7:46327876-46327638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):75, 19

               
               
               Conread position:179-441
               
               
               Cow position:chr7:49417493-49417754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:179
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):170, 40

               
               
               Conread position:179-443
               
               
               Cow position:chr7:28544065-28544326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:184
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):170, 39

               
               
               Conread position:179-447
               
               
               Cow position:chr7:32945963-32946222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:189
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):170, 40

               
               
               Conread position:180-395
               
               
               Cow position:chr7:51638677-51638466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):108, 39

               
               
               Conread position:180-449
               
               
               Cow position:chr7:32910435-32910693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:194
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):40, 84

               
               
               Conread position:183-508
               
               
               Cow position:chr7:12424438-12424761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 86

               
               
               Conread position:188-448
               
               
               Cow position:chr7:25872997-25873254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):37, 119

               
               
               Conread position:192-432
               
               
               Cow position:chr7:53579491-53579253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):29, 90

               
               
               Conread position:193-452
               
               
               Cow position:chr7:41745571-41745307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):33, 228

               
               
               Conread position:196-434
               
               
               Cow position:chr7:9926824-9926589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:167
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):153, 23

               
               
               Conread position:197-400
               
               
               Cow position:chr7:57829132-57829330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):151, 34

               
               
               Conread position:198-432
               
               
               Cow position:chr7:13067067-13067295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:172
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):26, 56

               
               
               Conread position:198-451
               
               
               Cow position:chr7:50566291-50566043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):150, 23

               
               
               Conread position:200-395
               
               
               Cow position:chr7:40425406-40425211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):29, 93

               
               
               Conread position:200-449
               
               
               Cow position:chr7:39162276-39162528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:170
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):117, 140

               
               
               Conread position:201-506
               
               
               Cow position:chr7:4512903-4512607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):148, 19

               
               
               Conread position:203-394
               
               
               Cow position:chr7:51673665-51673479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:140
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):145, 96

               
               
               Conread position:206-422
               
               
               Cow position:chr7:8102338-8102550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):143, 13

               
               
               Conread position:209-449
               
               
               Cow position:chr7:40308597-40308363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):139, 85

               
               
               Conread position:209-506
               
               
               Cow position:chr7:41913780-41913489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):21, 46

               
               
               Conread position:214-432
               
               
               Cow position:chr7:52209127-52208907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):46, 26

               
               
               Conread position:214-449
               
               
               Cow position:chr7:57518007-57518232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:171
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):134, 11

               
               
               Conread position:214-508
               
               
               Cow position:chr7:56081519-56081802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:206
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):63, 21

               
               
               Conread position:215-449
               
               
               Cow position:chr7:43484615-43484373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):13, 77

               
               
               Conread position:221-439
               
               
               Cow position:chr7:62398117-62398335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):124, 99

               
               
               Conread position:224-443
               
               
               Cow position:chr7:63679011-63679223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):124, 85

               
               
               Conread position:224-449
               
               
               Cow position:chr7:24460892-24461107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):124, 46

               
               
               Conread position:224-470
               
               
               Cow position:chr7:9161734-9161500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:172
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):124, 73

               
               
               Conread position:227-422
               
               
               Cow position:chr7:4811959-4812145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):121, 37

               
               
               Conread position:227-486
               
               
               Cow position:chr7:22981274-22981530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:192
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):88, 15

               
               
               Conread position:230-508
               
               
               Cow position:chr7:18947807-18947526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 73

               
               
               Conread position:234-434
               
               
               Cow position:chr7:7535477-7535681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:236-451
               
               
               Cow position:chr7:39823655-39823442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):107, 68

               
               
               Conread position:238-421
               
               
               Cow position:chr7:51917940-51917758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):23, 84

               
               
               Conread position:239-413
               
               
               Cow position:chr7:56886561-56886389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):106, 67

               
               
               Conread position:241-487
               
               
               Cow position:chr7:21545414-21545174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):104, 53

               
               
               Conread position:242-473
               
               
               Cow position:chr7:34441234-34441008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):107, 86

               
               
               Conread position:242-496
               
               
               Cow position:chr7:53005306-53005551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:173
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):107, 62

               
               
               Conread position:242-506
               
               
               Cow position:chr7:8074151-8073889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:183
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):73, 60

               
               
               Conread position:243-427
               
               
               Cow position:chr7:9108413-9108598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):58, 78

               
               
               Conread position:243-449
               
               
               Cow position:chr7:37466461-37466669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:148
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):67, 50

               
               
               Conread position:243-504
               
               
               Cow position:chr7:48012513-48012770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):106, 32

               
               
               Conread position:243-508
               
               
               Cow position:chr7:38429759-38429484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:201
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):100, 62

               
               
               Conread position:245-398
               
               
               Cow position:chr7:51644602-51644755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:114
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):34, 44

               
               
               Conread position:248-421
               
               
               Cow position:chr7:52550763-52550927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):100, 11

               
               
               Conread position:248-460
               
               
               Cow position:chr7:29682496-29682284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):100, 51

               
               
               Conread position:250-419
               
               
               Cow position:chr7:41104606-41104427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:250-432
               
               
               Cow position:chr7:33913928-33914109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):98, 52

               
               
               Conread position:250-448
               
               
               Cow position:chr7:168709-168513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):98, 61

               
               
               Conread position:250-448
               
               
               Cow position:chr7:11549624-11549818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):98, 52

               
               
               Conread position:250-449
               
               
               Cow position:chr7:39838920-39838721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):98, 64

               
               
               Conread position:251-487
               
               
               Cow position:chr7:57311584-57311810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):98, 41

               
               
               Conread position:252-448
               
               
               Cow position:chr7:14316901-14317097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):14, 48

               
               
               Conread position:255-449
               
               
               Cow position:chr7:29505077-29505271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:151
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):94, 41

               
               
               Conread position:255-486
               
               
               Cow position:chr7:1350393-1350164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):94, 64

               
               
               Conread position:258-421
               
               
               Cow position:chr7:49371139-49370977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):91, 44

               
               
               Conread position:259-448
               
               
               Cow position:chr7:24928052-24927868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):91, 37

               
               
               Conread position:259-449
               
               
               Cow position:chr7:8089129-8089321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):89, 118

               
               
               Conread position:260-449
               
               
               Cow position:chr7:25785806-25785995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):88, 30

               
               
               Conread position:266-466
               
               
               Cow position:chr7:49630154-49630350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:149
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):82, 14

               
               
               Conread position:268-449
               
               
               Cow position:chr7:50166004-50166185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):34, 13

               
               
               Conread position:271-394
               
               
               Cow position:chr7:63016210-63016334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:101
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:271-508
               
               
               Cow position:chr7:65460819-65461047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:172
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):47, 30

               
               
               Conread position:274-504
               
               
               Cow position:chr7:24869661-24869438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:168
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):74, 8

               
               
               Conread position:276-448
               
               
               Cow position:chr7:19414466-19414296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):69, 25

               
               
               Conread position:282-508
               
               
               Cow position:chr7:23057524-23057300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):65, 8

               
               
               Conread position:291-464
               
               
               Cow position:chr7:2894724-2894898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:129
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):107, 15

               
               
               Conread position:297-485
               
               
               Cow position:chr7:14043979-14044164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):52, 75

               
               
               Conread position:299-508
               
               
               Cow position:chr7:39947245-39947014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:300-449
               
               
               Cow position:chr7:53652989-53653139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:111
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):48, 21

               
               
               Conread position:303-504
               
               
               Cow position:chr7:10885972-10886173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:149
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):45, 10

               
               
               Conread position:305-507
               
               
               Cow position:chr7:12233029-12233239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):10, 19

               
               
               Conread position:306-448
               
               
               Cow position:chr7:59258633-59258490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):42, 111

               
               
               Conread position:306-452
               
               
               Cow position:chr7:15739574-15739427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):42, 110

               
               
               Conread position:306-475
               
               
               Cow position:chr7:11015693-11015862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:131
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):42, 147

               
               
               Conread position:306-508
               
               
               Cow position:chr7:39603338-39603537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):125, 17

               
               
               Conread position:307-505
               
               
               Cow position:chr7:59689878-59689686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):41, 9

               
               
               Conread position:307-506
               
               
               Cow position:chr7:12488445-12488655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:309-508
               
               
               Cow position:chr7:37444879-37445079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:146
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):42, 107

               
               
               Conread position:310-448
               
               
               Cow position:chr7:52517341-52517481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:104
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:317-437
               
               
               Cow position:chr7:41770361-41770239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:100
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:321-508
               
               
               Cow position:chr7:51086181-51086371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:346-508
               
               
               Cow position:chr7:9054047-9054212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:124
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:346-508
               
               
               Cow position:chr7:45748984-45748825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:347-508
               
               
               Cow position:chr7:66179682-66179520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):58, 39

               
               
               Conread position:350-490
               
               
               Cow position:chr7:59713773-59713913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:102
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:352-508
               
               
               Cow position:chr7:22802664-22802511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):45, 128

               
               
               Conread position:353-508
               
               
               Cow position:chr7:48675779-48675623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):46, 18

               
               
               Conread position:7-383
               
               
               Cow position:chr8:31253492-31253871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 302

               
               
               Conread position:10-448
               
               
               Cow position:chr8:33585900-33586337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:292
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):101, 6

               
               
               Conread position:11-462
               
               
               Cow position:chr8:25871416-25871864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 55

               
               
               Conread position:12-505
               
               
               Cow position:chr8:13809900-13810382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:498
               
               
               Alignm identity:351
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 166

               
               
               Conread position:15-305
               
               
               Cow position:chr8:26600249-26600534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:211
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):58, 129

               
               
               Conread position:15-347
               
               
               Cow position:chr8:20384481-20384801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:231
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):64, 95

               
               
               Conread position:15-379
               
               
               Cow position:chr8:45493573-45493933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 220

               
               
               Conread position:15-418
               
               
               Cow position:chr8:9917584-9917977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 156

               
               
               Conread position:15-449
               
               
               Cow position:chr8:59766302-59766720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:282
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):47, 64

               
               
               Conread position:15-452
               
               
               Cow position:chr8:33431948-33432387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 161

               
               
               Conread position:16-275
               
               
               Cow position:chr8:54572339-54572598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 93

               
               
               Conread position:16-279
               
               
               Cow position:chr8:13930794-13930526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:16-284
               
               
               Cow position:chr8:32622293-32622019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:177
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:16-291
               
               
               Cow position:chr8:31266498-31266219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:201
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):61, 176

               
               
               Conread position:16-308
               
               
               Cow position:chr8:46623835-46623554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):199, 49

               
               
               Conread position:16-312
               
               
               Cow position:chr8:22103491-22103191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 209

               
               
               Conread position:16-320
               
               
               Cow position:chr8:39808257-39808558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:207
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):79, 5

               
               
               Conread position:16-321
               
               
               Cow position:chr8:24933845-24934152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 142

               
               
               Conread position:16-338
               
               
               Cow position:chr8:1834603-1834933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:235
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):49, 11

               
               
               Conread position:16-343
               
               
               Cow position:chr8:54195233-54195557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 22

               
               
               Conread position:16-346
               
               
               Cow position:chr8:5485184-5484849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 6

               
               
               Conread position:16-346
               
               
               Cow position:chr8:10802472-10802144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 26

               
               
               Conread position:16-346
               
               
               Cow position:chr8:56581506-56581187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 159

               
               
               Conread position:16-363
               
               
               Cow position:chr8:21960943-21961285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):332, 273

               
               
               Conread position:16-363
               
               
               Cow position:chr8:36398222-36397880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 15

               
               
               Conread position:16-363
               
               
               Cow position:chr8:42607584-42607241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:248
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):53, 101

               
               
               Conread position:16-363
               
               
               Cow position:chr8:51318664-51319010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:250
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):98, 207

               
               
               Conread position:16-364
               
               
               Cow position:chr8:12303142-12303494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:233
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):93, 44

               
               
               Conread position:16-367
               
               
               Cow position:chr8:32626934-32626580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:226
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):101, 290

               
               
               Conread position:16-369
               
               
               Cow position:chr8:688560-688214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:251
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):93, 210

               
               
               Conread position:16-373
               
               
               Cow position:chr8:35291076-35290717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:231
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):101, 276

               
               
               Conread position:16-373
               
               
               Cow position:chr8:42159890-42160246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:230
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):83, 100

               
               
               Conread position:16-373
               
               
               Cow position:chr8:53822245-53822604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:234
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):51, 38

               
               
               Conread position:16-394
               
               
               Cow position:chr8:25579234-25579606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 110

               
               
               Conread position:16-397
               
               
               Cow position:chr8:47342427-47342809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 284

               
               
               Conread position:16-399
               
               
               Cow position:chr8:16972837-16972451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:257
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):168, 280

               
               
               Conread position:16-399
               
               
               Cow position:chr8:39144463-39144818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:273
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):93, 62

               
               
               Conread position:16-407
               
               
               Cow position:chr8:9230188-9229801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:277
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):203, 29

               
               
               Conread position:16-408
               
               
               Cow position:chr8:18049296-18049678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 95

               
               
               Conread position:16-418
               
               
               Cow position:chr8:14947609-14947202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):158, 92

               
               
               Conread position:16-421
               
               
               Cow position:chr8:24237446-24237848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 136

               
               
               Conread position:16-422
               
               
               Cow position:chr8:11606029-11606424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 49

               
               
               Conread position:16-423
               
               
               Cow position:chr8:6724078-6723708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:280
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):61, 83

               
               
               Conread position:16-423
               
               
               Cow position:chr8:12538900-12538516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:289
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):82, 16

               
               
               Conread position:16-426
               
               
               Cow position:chr8:51695099-51694712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):276, 88

               
               
               Conread position:16-428
               
               
               Cow position:chr8:33693191-33693610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 304

               
               
               Conread position:16-430
               
               
               Cow position:chr8:53642739-53642326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:299
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):48, 22

               
               
               Conread position:16-432
               
               
               Cow position:chr8:21221894-21222299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 116

               
               
               Conread position:16-434
               
               
               Cow position:chr8:20306668-20307084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 189

               
               
               Conread position:16-434
               
               
               Cow position:chr8:24390502-24390085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):329, 75

               
               
               Conread position:16-439
               
               
               Cow position:chr8:35828112-35827689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 106

               
               
               Conread position:16-439
               
               
               Cow position:chr8:44703789-44704205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 55

               
               
               Conread position:16-440
               
               
               Cow position:chr8:11942280-11942680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:296
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):44, 83

               
               
               Conread position:16-440
               
               
               Cow position:chr8:38893700-38894128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 207

               
               
               Conread position:16-446
               
               
               Cow position:chr8:25591511-25591936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 226

               
               
               Conread position:16-447
               
               
               Cow position:chr8:1303603-1304029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 14

               
               
               Conread position:16-447
               
               
               Cow position:chr8:24513445-24513024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 158

               
               
               Conread position:16-448
               
               
               Cow position:chr8:538220-537789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 16

               
               
               Conread position:16-448
               
               
               Cow position:chr8:3446382-3445970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 29

               
               
               Conread position:16-448
               
               
               Cow position:chr8:23179850-23179421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 38

               
               
               Conread position:16-448
               
               
               Cow position:chr8:32621304-32620859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 210

               
               
               Conread position:16-448
               
               
               Cow position:chr8:43168332-43167904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 199

               
               
               Conread position:16-448
               
               
               Cow position:chr8:45878740-45879158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 38

               
               
               Conread position:16-448
               
               
               Cow position:chr8:46952224-46952639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):206, 14

               
               
               Conread position:16-449
               
               
               Cow position:chr8:6233205-6232767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 206

               
               
               Conread position:16-449
               
               
               Cow position:chr8:12058406-12058847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 276

               
               
               Conread position:16-449
               
               
               Cow position:chr8:16143819-16144255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 70

               
               
               Conread position:16-449
               
               
               Cow position:chr8:17199744-17199308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 95

               
               
               Conread position:16-449
               
               
               Cow position:chr8:18017216-18017643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:296
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):93, 34

               
               
               Conread position:16-449
               
               
               Cow position:chr8:21206581-21207004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):132, 29

               
               
               Conread position:16-449
               
               
               Cow position:chr8:21827052-21826613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):324, 38

               
               
               Conread position:16-449
               
               
               Cow position:chr8:26625567-26625993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 194

               
               
               Conread position:16-449
               
               
               Cow position:chr8:28884506-28884962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:308
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):48, 319

               
               
               Conread position:16-449
               
               
               Cow position:chr8:35457149-35456717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:273
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):93, 24

               
               
               Conread position:16-449
               
               
               Cow position:chr8:45925322-45925741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 38

               
               
               Conread position:16-449
               
               
               Cow position:chr8:58417382-58417807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 96

               
               
               Conread position:16-449
               
               
               Cow position:chr8:60126528-60126974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:293
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):91, 44

               
               
               Conread position:16-450
               
               
               Cow position:chr8:20836820-20837245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 172

               
               
               Conread position:16-451
               
               
               Cow position:chr8:6531119-6531542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):243, 89

               
               
               Conread position:16-452
               
               
               Cow position:chr8:3704314-3704749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 181

               
               
               Conread position:16-452
               
               
               Cow position:chr8:58875769-58876198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 166

               
               
               Conread position:16-469
               
               
               Cow position:chr8:1107511-1107044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 220

               
               
               Conread position:16-471
               
               
               Cow position:chr8:21077289-21077727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 94

               
               
               Conread position:16-473
               
               
               Cow position:chr8:11590621-11591067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 96

               
               
               Conread position:16-497
               
               
               Cow position:chr8:15391459-15390977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:496
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):286, 97

               
               
               Conread position:16-502
               
               
               Cow position:chr8:10298043-10297562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:495
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 62

               
               
               Conread position:16-505
               
               
               Cow position:chr8:8134820-8134322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:505
               
               
               Alignm identity:364
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 216

               
               
               Conread position:16-505
               
               
               Cow position:chr8:30324020-30324516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:368
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 139

               
               
               Conread position:16-506
               
               
               Cow position:chr8:1187630-1188113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 14

               
               
               Conread position:16-507
               
               
               Cow position:chr8:642863-642390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:502
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 33

               
               
               Conread position:16-507
               
               
               Cow position:chr8:13321902-13321432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:345
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):78, 29

               
               
               Conread position:16-508
               
               
               Cow position:chr8:16938757-16938279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 155

               
               
               Conread position:16-508
               
               
               Cow position:chr8:39845326-39845807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:355
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 127

               
               
               Conread position:16-508
               
               
               Cow position:chr8:55829641-55829165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:500
               
               
               Alignm identity:362
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 11

               
               
               Conread position:16-508
               
               
               Cow position:chr8:57218513-57218994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:335
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):89, 12

               
               
               Conread position:16-508
               
               
               Cow position:chr8:60454889-60455379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:505
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):100, 19

               
               
               Conread position:17-361
               
               
               Cow position:chr8:35555867-35555516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:251
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):92, 48

               
               
               Conread position:17-367
               
               
               Cow position:chr8:39936196-39936556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 292

               
               
               Conread position:17-427
               
               
               Cow position:chr8:46842567-46842173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:266
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):86, 21

               
               
               Conread position:17-432
               
               
               Cow position:chr8:28379080-28378660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:280
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):157, 98

               
               
               Conread position:17-449
               
               
               Cow position:chr8:29958123-29958523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 49

               
               
               Conread position:17-449
               
               
               Cow position:chr8:38572583-38572144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 44

               
               
               Conread position:17-451
               
               
               Cow position:chr8:33407138-33406719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 49

               
               
               Conread position:17-469
               
               
               Cow position:chr8:13374237-13374690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 10

               
               
               Conread position:17-508
               
               
               Cow position:chr8:29026927-29026457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:355
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 115

               
               
               Conread position:17-508
               
               
               Cow position:chr8:37122653-37123149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:370
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 155

               
               
               Conread position:17-508
               
               
               Cow position:chr8:43113143-43112649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:513
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 48

               
               
               Conread position:17-508
               
               
               Cow position:chr8:58519994-58520487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:353
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 90

               
               
               Conread position:18-290
               
               
               Cow position:chr8:36648758-36648487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:204
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):156, 43

               
               
               Conread position:18-310
               
               
               Cow position:chr8:4161332-4161039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):97, 285

               
               
               Conread position:18-369
               
               
               Cow position:chr8:30245130-30244793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:18-397
               
               
               Cow position:chr8:38573523-38573152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:250
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):99, 19

               
               
               Conread position:18-434
               
               
               Cow position:chr8:18730131-18730557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 95

               
               
               Conread position:18-447
               
               
               Cow position:chr8:22273554-22273983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:291
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):30, 91

               
               
               Conread position:18-447
               
               
               Cow position:chr8:48528258-48527838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 42

               
               
               Conread position:18-448
               
               
               Cow position:chr8:9942830-9942403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):169, 90

               
               
               Conread position:18-482
               
               
               Cow position:chr8:49600212-49599767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 20

               
               
               Conread position:18-490
               
               
               Cow position:chr8:7610231-7609758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:494
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 28

               
               
               Conread position:18-507
               
               
               Cow position:chr8:40888498-40888023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:495
               
               
               Alignm identity:325
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):89, 43

               
               
               Conread position:18-508
               
               
               Cow position:chr8:46202972-46203449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:355
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 22

               
               
               Conread position:19-334
               
               
               Cow position:chr8:3433573-3433888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:227
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):90, 59

               
               
               Conread position:19-382
               
               
               Cow position:chr8:9517484-9517117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 41

               
               
               Conread position:19-418
               
               
               Cow position:chr8:51361257-51361653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 40

               
               
               Conread position:19-508
               
               
               Cow position:chr8:21281783-21282240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:493
               
               
               Alignm identity:330
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):225, 35

               
               
               Conread position:23-471
               
               
               Cow position:chr8:24471347-24471807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 184

               
               
               Conread position:24-495
               
               
               Cow position:chr8:45781966-45781497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:488
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 128

               
               
               Conread position:25-508
               
               
               Cow position:chr8:36375811-36375320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:505
               
               
               Alignm identity:371
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 110

               
               
               Conread position:26-397
               
               
               Cow position:chr8:29262485-29262850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:259
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):75, 201

               
               
               Conread position:26-457
               
               
               Cow position:chr8:3015171-3015614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 133

               
               
               Conread position:27-506
               
               
               Cow position:chr8:35218059-35218547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:502
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 60

               
               
               Conread position:29-508
               
               
               Cow position:chr8:43027949-43027472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:490
               
               
               Alignm identity:364
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 98

               
               
               Conread position:30-346
               
               
               Cow position:chr8:35966325-35966008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 49

               
               
               Conread position:30-373
               
               
               Cow position:chr8:21152170-21151825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:232
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):87, 236

               
               
               Conread position:30-426
               
               
               Cow position:chr8:19642177-19642570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 263

               
               
               Conread position:30-434
               
               
               Cow position:chr8:10970534-10970944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 195

               
               
               Conread position:30-450
               
               
               Cow position:chr8:28987427-28987825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:288
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):319, 80

               
               
               Conread position:30-473
               
               
               Cow position:chr8:11249751-11249332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:304
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):76, 43

               
               
               Conread position:32-365
               
               
               Cow position:chr8:26960828-26961165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:230
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):75, 130

               
               
               Conread position:32-426
               
               
               Cow position:chr8:42146056-42145673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 62

               
               
               Conread position:34-507
               
               
               Cow position:chr8:54052018-54052498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:489
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 44

               
               
               Conread position:35-451
               
               
               Cow position:chr8:11078582-11078986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:282
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):74, 155

               
               
               Conread position:37-507
               
               
               Cow position:chr8:9811504-9811983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 145

               
               
               Conread position:39-379
               
               
               Cow position:chr8:53485425-53485753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 19

               
               
               Conread position:39-434
               
               
               Cow position:chr8:24201619-24202027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:269
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):72, 185

               
               
               Conread position:40-448
               
               
               Cow position:chr8:35971564-35971973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 33

               
               
               Conread position:41-372
               
               
               Cow position:chr8:43191307-43190983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 229

               
               
               Conread position:45-395
               
               
               Cow position:chr8:9461479-9461127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):129, 63

               
               
               Conread position:45-508
               
               
               Cow position:chr8:48513283-48512824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 12

               
               
               Conread position:46-449
               
               
               Cow position:chr8:47169678-47170068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 178

               
               
               Conread position:46-452
               
               
               Cow position:chr8:47461587-47461987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 258

               
               
               Conread position:48-447
               
               
               Cow position:chr8:47665182-47664783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 176

               
               
               Conread position:50-482
               
               
               Cow position:chr8:2774512-2774943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 171

               
               
               Conread position:52-359
               
               
               Cow position:chr8:39721394-39721703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:214
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):51, 159

               
               
               Conread position:53-426
               
               
               Cow position:chr8:38780440-38780808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 90

               
               
               Conread position:53-484
               
               
               Cow position:chr8:2865636-2866063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:280
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):7, 100

               
               
               Conread position:54-366
               
               
               Cow position:chr8:48437670-48437360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):37, 169

               
               
               Conread position:54-422
               
               
               Cow position:chr8:7064543-7064189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:261
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):20, 12

               
               
               Conread position:54-448
               
               
               Cow position:chr8:36249687-36249294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 55

               
               
               Conread position:54-504
               
               
               Cow position:chr8:26922368-26922800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 169

               
               
               Conread position:55-296
               
               
               Cow position:chr8:4563695-4563450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:176
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):54, 9

               
               
               Conread position:55-451
               
               
               Cow position:chr8:15569724-15569356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:266
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):296, 13

               
               
               Conread position:57-420
               
               
               Cow position:chr8:6816938-6816575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:243
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):52, 37

               
               
               Conread position:60-286
               
               
               Cow position:chr8:36059577-36059809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:161
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):49, 141

               
               
               Conread position:60-397
               
               
               Cow position:chr8:31775920-31776263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:239
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):49, 238

               
               
               Conread position:60-449
               
               
               Cow position:chr8:51661863-51661476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:255
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):51, 68

               
               
               Conread position:61-397
               
               
               Cow position:chr8:59131663-59131333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):11, 73

               
               
               Conread position:65-356
               
               
               Cow position:chr8:52195667-52195951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):50, 24

               
               
               Conread position:65-449
               
               
               Cow position:chr8:42762684-42762306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 14

               
               
               Conread position:66-290
               
               
               Cow position:chr8:34400690-34400913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):48, 68

               
               
               Conread position:66-347
               
               
               Cow position:chr8:16023893-16023618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):108, 38

               
               
               Conread position:66-379
               
               
               Cow position:chr8:225622-225313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:223
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):43, 133

               
               
               Conread position:66-434
               
               
               Cow position:chr8:10263420-10263055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 54

               
               
               Conread position:66-448
               
               
               Cow position:chr8:8010645-8011027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 157

               
               
               Conread position:66-485
               
               
               Cow position:chr8:20892108-20892494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:285
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):279, 42

               
               
               Conread position:66-508
               
               
               Cow position:chr8:9051273-9050857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 108

               
               
               Conread position:66-508
               
               
               Cow position:chr8:13222099-13221672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 89

               
               
               Conread position:66-508
               
               
               Cow position:chr8:26228701-26229130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 96

               
               
               Conread position:66-508
               
               
               Cow position:chr8:44437510-44437954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 123

               
               
               Conread position:67-449
               
               
               Cow position:chr8:35580885-35580510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):282, 43

               
               
               Conread position:67-450
               
               
               Cow position:chr8:37571964-37571578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 65

               
               
               Conread position:68-408
               
               
               Cow position:chr8:43687285-43687638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:235
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:69-485
               
               
               Cow position:chr8:32984362-32983941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 132

               
               
               Conread position:70-422
               
               
               Cow position:chr8:1393977-1394329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):100, 42

               
               
               Conread position:70-449
               
               
               Cow position:chr8:18831486-18831867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 44

               
               
               Conread position:70-449
               
               
               Cow position:chr8:20339032-20339400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:269
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):39, 104

               
               
               Conread position:70-449
               
               
               Cow position:chr8:45127950-45127578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):104, 38

               
               
               Conread position:70-508
               
               
               Cow position:chr8:9131180-9130744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 135

               
               
               Conread position:70-508
               
               
               Cow position:chr8:23160700-23161133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):112, 166

               
               
               Conread position:70-508
               
               
               Cow position:chr8:47136264-47135821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 155

               
               
               Conread position:71-341
               
               
               Cow position:chr8:44664836-44664559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):34, 157

               
               
               Conread position:71-399
               
               
               Cow position:chr8:48775563-48775893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 230

               
               
               Conread position:71-427
               
               
               Cow position:chr8:49687476-49687115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 233

               
               
               Conread position:71-449
               
               
               Cow position:chr8:1297264-1297635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:256
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):43, 73

               
               
               Conread position:71-449
               
               
               Cow position:chr8:18207399-18207018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:273
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):38, 164

               
               
               Conread position:71-472
               
               
               Cow position:chr8:48763311-48763693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 38

               
               
               Conread position:71-508
               
               
               Cow position:chr8:18057491-18057931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 13

               
               
               Conread position:71-508
               
               
               Cow position:chr8:20108035-20107592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:303
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):95, 37

               
               
               Conread position:71-508
               
               
               Cow position:chr8:36505118-36505558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 25

               
               
               Conread position:73-415
               
               
               Cow position:chr8:1472812-1473154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:247
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):38, 50

               
               
               Conread position:73-449
               
               
               Cow position:chr8:17180276-17179910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 108

               
               
               Conread position:75-302
               
               
               Cow position:chr8:42578322-42578098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:164
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):40, 30

               
               
               Conread position:75-448
               
               
               Cow position:chr8:8324109-8323746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:263
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):34, 115

               
               
               Conread position:75-451
               
               
               Cow position:chr8:20158008-20157633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 98

               
               
               Conread position:76-447
               
               
               Cow position:chr8:8668445-8668064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 83

               
               
               Conread position:77-399
               
               
               Cow position:chr8:34799426-34799760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:234
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):32, 255

               
               
               Conread position:77-413
               
               
               Cow position:chr8:8987183-8986856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:226
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):273, 33

               
               
               Conread position:77-448
               
               
               Cow position:chr8:53383159-53383528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:266
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):34, 111

               
               
               Conread position:77-449
               
               
               Cow position:chr8:11612301-11612675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 146

               
               
               Conread position:77-449
               
               
               Cow position:chr8:42794556-42794197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 32

               
               
               Conread position:77-505
               
               
               Cow position:chr8:13975652-13976070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):97, 31

               
               
               Conread position:77-508
               
               
               Cow position:chr8:49265555-49265119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 124

               
               
               Conread position:78-404
               
               
               Cow position:chr8:28295090-28294767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:230
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):33, 146

               
               
               Conread position:78-448
               
               
               Cow position:chr8:47295731-47296093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:246
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):32, 148

               
               
               Conread position:78-450
               
               
               Cow position:chr8:1023715-1024085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 224

               
               
               Conread position:78-507
               
               
               Cow position:chr8:39985979-39985559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):228, 35

               
               
               Conread position:79-347
               
               
               Cow position:chr8:16053297-16053556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:191
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):9, 32

               
               
               Conread position:79-362
               
               
               Cow position:chr8:28412856-28412576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):35, 82

               
               
               Conread position:79-383
               
               
               Cow position:chr8:20674021-20673722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):36, 146

               
               
               Conread position:79-399
               
               
               Cow position:chr8:41627365-41627042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 222

               
               
               Conread position:79-412
               
               
               Cow position:chr8:47328099-47328430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:232
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):30, 158

               
               
               Conread position:79-432
               
               
               Cow position:chr8:30135671-30136023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:251
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):20, 240

               
               
               Conread position:79-508
               
               
               Cow position:chr8:55304831-55305265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 148

               
               
               Conread position:80-506
               
               
               Cow position:chr8:51905288-51904857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 145

               
               
               Conread position:81-297
               
               
               Cow position:chr8:45664532-45664749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:157
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):28, 90

               
               
               Conread position:81-449
               
               
               Cow position:chr8:46964473-46964860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:253
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):28, 183

               
               
               Conread position:81-506
               
               
               Cow position:chr8:59656427-59656014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 22

               
               
               Conread position:82-434
               
               
               Cow position:chr8:53558845-53558499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 81

               
               
               Conread position:82-449
               
               
               Cow position:chr8:55898032-55897688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:248
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):27, 66

               
               
               Conread position:82-481
               
               
               Cow position:chr8:42575451-42575843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 144

               
               
               Conread position:82-508
               
               
               Cow position:chr8:51959647-51959225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 228

               
               
               Conread position:84-351
               
               
               Cow position:chr8:34410214-34410477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):111, 142

               
               
               Conread position:84-362
               
               
               Cow position:chr8:4205692-4205961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:191
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):90, 11

               
               
               Conread position:85-397
               
               
               Cow position:chr8:23030198-23030495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):16, 30

               
               
               Conread position:85-508
               
               
               Cow position:chr8:31646245-31645838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 87

               
               
               Conread position:86-369
               
               
               Cow position:chr8:28509729-28509438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):23, 163

               
               
               Conread position:88-445
               
               
               Cow position:chr8:669799-669444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:252
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):23, 8

               
               
               Conread position:89-399
               
               
               Cow position:chr8:51402734-51403032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):20, 148

               
               
               Conread position:89-422
               
               
               Cow position:chr8:20683738-20684070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 64

               
               
               Conread position:89-486
               
               
               Cow position:chr8:60320288-60320678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 63

               
               
               Conread position:90-505
               
               
               Cow position:chr8:1169501-1169105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:296
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):21, 50

               
               
               Conread position:92-425
               
               
               Cow position:chr8:30418810-30419144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:230
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):17, 181

               
               
               Conread position:94-377
               
               
               Cow position:chr8:33286944-33287216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:198
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):221, 23

               
               
               Conread position:94-395
               
               
               Cow position:chr8:15694704-15694403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):87, 23

               
               
               Conread position:94-408
               
               
               Cow position:chr8:59043331-59043014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:223
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):15, 201

               
               
               Conread position:95-342
               
               
               Cow position:chr8:36464978-36465222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:185
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):12, 68

               
               
               Conread position:95-482
               
               
               Cow position:chr8:20926865-20926477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 76

               
               
               Conread position:96-443
               
               
               Cow position:chr8:35990819-35991169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 129

               
               
               Conread position:96-448
               
               
               Cow position:chr8:7149913-7149577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:243
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):13, 59

               
               
               Conread position:96-449
               
               
               Cow position:chr8:54031650-54032004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:245
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):19, 106

               
               
               Conread position:96-457
               
               
               Cow position:chr8:39592363-39592720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:250
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):91, 9

               
               
               Conread position:98-346
               
               
               Cow position:chr8:39555752-39556003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):16, 133

               
               
               Conread position:98-434
               
               
               Cow position:chr8:29625185-29624859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:233
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):253, 121

               
               
               Conread position:98-439
               
               
               Cow position:chr8:21382920-21382576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 131

               
               
               Conread position:98-473
               
               
               Cow position:chr8:25572827-25573188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:256
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):11, 124

               
               
               Conread position:99-355
               
               
               Cow position:chr8:24952116-24952378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:189
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):12, 135

               
               
               Conread position:99-363
               
               
               Cow position:chr8:39544553-39544821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:188
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):27, 13

               
               
               Conread position:100-360
               
               
               Cow position:chr8:20111888-20112149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:192
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):9, 23

               
               
               Conread position:100-427
               
               
               Cow position:chr8:8097493-8097164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 109

               
               
               Conread position:100-508
               
               
               Cow position:chr8:34287703-34288104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 126

               
               
               Conread position:110-350
               
               
               Cow position:chr8:37147908-37148147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:181
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):115, 193

               
               
               Conread position:110-422
               
               
               Cow position:chr8:24329058-24328757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 38

               
               
               Conread position:110-449
               
               
               Cow position:chr8:50311056-50310726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:232
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):238, 51

               
               
               Conread position:110-464
               
               
               Cow position:chr8:59187821-59188167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:241
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):30, 85

               
               
               Conread position:113-372
               
               
               Cow position:chr8:59438492-59438233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:194
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):61, 110

               
               
               Conread position:113-418
               
               
               Cow position:chr8:45486401-45486691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:223
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):29, 55

               
               
               Conread position:113-508
               
               
               Cow position:chr8:28221775-28221385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 5

               
               
               Conread position:113-508
               
               
               Cow position:chr8:31690593-31690987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 111

               
               
               Conread position:113-508
               
               
               Cow position:chr8:54210677-54211052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):189, 51

               
               
               Conread position:114-301
               
               
               Cow position:chr8:51493238-51493050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):114, 66

               
               
               Conread position:116-376
               
               
               Cow position:chr8:45690106-45689848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:194
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):113, 37

               
               
               Conread position:116-434
               
               
               Cow position:chr8:6485141-6484821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:220
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):58, 106

               
               
               Conread position:116-438
               
               
               Cow position:chr8:5979737-5980056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):231, 45

               
               
               Conread position:116-449
               
               
               Cow position:chr8:1620930-1620601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):232, 24

               
               
               Conread position:117-336
               
               
               Cow position:chr8:11217273-11217052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):57, 181

               
               
               Conread position:118-508
               
               
               Cow position:chr8:4500286-4500690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 13

               
               
               Conread position:118-508
               
               
               Cow position:chr8:11896015-11896382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:265
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):56, 11

               
               
               Conread position:120-446
               
               
               Cow position:chr8:3922934-3922594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:238
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):19, 191

               
               
               Conread position:121-508
               
               
               Cow position:chr8:1011776-1012164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 102

               
               
               Conread position:123-434
               
               
               Cow position:chr8:26304600-26304281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:235
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):57, 191

               
               
               Conread position:123-449
               
               
               Cow position:chr8:8190267-8189934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:227
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):5, 99

               
               
               Conread position:123-449
               
               
               Cow position:chr8:27138987-27138670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:225
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):225, 38

               
               
               Conread position:125-452
               
               
               Cow position:chr8:37882153-37882473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:232
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):104, 23

               
               
               Conread position:126-449
               
               
               Cow position:chr8:39174445-39174117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 97

               
               
               Conread position:127-426
               
               
               Cow position:chr8:37173267-37172960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):47, 119

               
               
               Conread position:128-443
               
               
               Cow position:chr8:4552963-4552629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:232
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:129-434
               
               
               Cow position:chr8:11278309-11277995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:223
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):58, 187

               
               
               Conread position:129-504
               
               
               Cow position:chr8:30463200-30463582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):162, 92

               
               
               Conread position:129-508
               
               
               Cow position:chr8:61128898-61128499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:272
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):77, 176

               
               
               Conread position:130-390
               
               
               Cow position:chr8:25847424-25847681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):57, 93

               
               
               Conread position:132-364
               
               
               Cow position:chr8:40549796-40549571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:168
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):111, 34

               
               
               Conread position:133-395
               
               
               Cow position:chr8:21083476-21083221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):100, 12

               
               
               Conread position:140-451
               
               
               Cow position:chr8:47284245-47283945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:221
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):209, 32

               
               
               Conread position:140-503
               
               
               Cow position:chr8:35519846-35520212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 82

               
               
               Conread position:141-420
               
               
               Cow position:chr8:5893763-5894040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:202
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):207, 78

               
               
               Conread position:146-397
               
               
               Cow position:chr8:20150731-20150486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):83, 15

               
               
               Conread position:146-422
               
               
               Cow position:chr8:6951357-6951624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):203, 15

               
               
               Conread position:146-434
               
               
               Cow position:chr8:19980250-19979970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:193
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):160, 15

               
               
               Conread position:146-505
               
               
               Cow position:chr8:29029457-29029093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:240
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):63, 15

               
               
               Conread position:147-508
               
               
               Cow position:chr8:21137439-21137099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:248
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):202, 14

               
               
               Conread position:148-315
               
               
               Cow position:chr8:35596932-35596768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:150-448
               
               
               Cow position:chr8:28313892-28313598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:202
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):199, 11

               
               
               Conread position:154-433
               
               
               Cow position:chr8:37292253-37291982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:193
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):195, 66

               
               
               Conread position:156-449
               
               
               Cow position:chr8:32332656-32332349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:202
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):27, 140

               
               
               Conread position:157-434
               
               
               Cow position:chr8:39807432-39807709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):136, 15

               
               
               Conread position:157-506
               
               
               Cow position:chr8:59507242-59506900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:238
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):81, 7

               
               
               Conread position:158-447
               
               
               Cow position:chr8:16507952-16507667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):46, 63

               
               
               Conread position:159-294
               
               
               Cow position:chr8:44882783-44882918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:103
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:159-446
               
               
               Cow position:chr8:38137258-38137544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:210
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):97, 61

               
               
               Conread position:161-323
               
               
               Cow position:chr8:36741318-36741158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:120
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):64, 30

               
               
               Conread position:161-411
               
               
               Cow position:chr8:3760325-3760080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:176
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):68, 25

               
               
               Conread position:161-434
               
               
               Cow position:chr8:19011955-19011685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):187, 59

               
               
               Conread position:161-490
               
               
               Cow position:chr8:57387762-57388099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:239
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):82, 59

               
               
               Conread position:161-508
               
               
               Cow position:chr8:12213855-12214201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:240
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):184, 39

               
               
               Conread position:161-508
               
               
               Cow position:chr8:51695534-51695201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):188, 19

               
               
               Conread position:164-449
               
               
               Cow position:chr8:27730885-27731162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):184, 55

               
               
               Conread position:165-432
               
               
               Cow position:chr8:30893160-30892894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:189
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):183, 75

               
               
               Conread position:165-508
               
               
               Cow position:chr8:19717251-19716914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:233
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):184, 54

               
               
               Conread position:168-397
               
               
               Cow position:chr8:29150025-29149793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):70, 130

               
               
               Conread position:169-508
               
               
               Cow position:chr8:15686540-15686218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:244
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):176, 51

               
               
               Conread position:172-359
               
               
               Cow position:chr8:5450756-5450568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):130, 19

               
               
               Conread position:172-396
               
               
               Cow position:chr8:19512612-19512390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:169
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):146, 48

               
               
               Conread position:172-448
               
               
               Cow position:chr8:33125358-33125618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:195
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):176, 16

               
               
               Conread position:172-449
               
               
               Cow position:chr8:37636136-37635869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:190
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):179, 21

               
               
               Conread position:172-449
               
               
               Cow position:chr8:48482963-48482687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:192
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):166, 77

               
               
               Conread position:172-449
               
               
               Cow position:chr8:53338809-53338539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:190
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):136, 48

               
               
               Conread position:172-451
               
               
               Cow position:chr8:37347605-37347328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 30

               
               
               Conread position:172-471
               
               
               Cow position:chr8:26008731-26009028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):176, 90

               
               
               Conread position:172-506
               
               
               Cow position:chr8:13738349-13738692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:242
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):71, 49

               
               
               Conread position:172-508
               
               
               Cow position:chr8:55884823-55885174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:245
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):140, 16

               
               
               Conread position:173-434
               
               
               Cow position:chr8:17232511-17232251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:177
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):171, 33

               
               
               Conread position:173-484
               
               
               Cow position:chr8:11782834-11783141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):172, 46

               
               
               Conread position:174-439
               
               
               Cow position:chr8:935560-935820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):157, 119

               
               
               Conread position:174-448
               
               
               Cow position:chr8:53633378-53633100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):41, 125

               
               
               Conread position:174-449
               
               
               Cow position:chr8:35563184-35563459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:189
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):119, 46

               
               
               Conread position:174-508
               
               
               Cow position:chr8:38711454-38711789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:249
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):111, 45

               
               
               Conread position:175-449
               
               
               Cow position:chr8:6073961-6073691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):222, 44

               
               
               Conread position:176-432
               
               
               Cow position:chr8:19301038-19301300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:180
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):18, 9

               
               
               Conread position:176-447
               
               
               Cow position:chr8:23586101-23585837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:197
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):39, 124

               
               
               Conread position:176-505
               
               
               Cow position:chr8:60170497-60170818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:219
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):67, 44

               
               
               Conread position:177-506
               
               
               Cow position:chr8:28228102-28228439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:240
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):16, 83

               
               
               Conread position:177-508
               
               
               Cow position:chr8:27053742-27053422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:229
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):25, 46

               
               
               Conread position:180-403
               
               
               Cow position:chr8:58171295-58171513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):165, 39

               
               
               Conread position:181-471
               
               
               Cow position:chr8:21858845-21858572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:215
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):218, 26

               
               
               Conread position:182-422
               
               
               Cow position:chr8:43227834-43228071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):166, 19

               
               
               Conread position:191-423
               
               
               Cow position:chr8:13144571-13144344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):5, 31

               
               
               Conread position:192-364
               
               
               Cow position:chr8:5515582-5515749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):157, 48

               
               
               Conread position:192-408
               
               
               Cow position:chr8:19546656-19546873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):30, 107

               
               
               Conread position:192-422
               
               
               Cow position:chr8:1936717-1936945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):156, 102

               
               
               Conread position:192-430
               
               
               Cow position:chr8:37391486-37391258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:171
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):204, 27

               
               
               Conread position:192-447
               
               
               Cow position:chr8:12779015-12778768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):119, 29

               
               
               Conread position:192-447
               
               
               Cow position:chr8:25388013-25388261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:193
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):156, 27

               
               
               Conread position:192-452
               
               
               Cow position:chr8:40143983-40143724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:198
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):33, 17

               
               
               Conread position:192-497
               
               
               Cow position:chr8:37334043-37334334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):156, 28

               
               
               Conread position:193-434
               
               
               Cow position:chr8:37862450-37862681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):204, 106

               
               
               Conread position:193-463
               
               
               Cow position:chr8:45447230-45446963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:189
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):131, 26

               
               
               Conread position:194-447
               
               
               Cow position:chr8:54147537-54147789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:175
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):151, 25

               
               
               Conread position:195-450
               
               
               Cow position:chr8:19698523-19698766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):153, 30

               
               
               Conread position:196-346
               
               
               Cow position:chr8:19975941-19975793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:109
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:196-489
               
               
               Cow position:chr8:31815171-31814880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:207
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):119, 25

               
               
               Conread position:197-368
               
               
               Cow position:chr8:33814861-33815028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:197-449
               
               
               Cow position:chr8:4649012-4648761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):148, 22

               
               
               Conread position:197-449
               
               
               Cow position:chr8:58058617-58058868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):148, 22

               
               
               Conread position:198-448
               
               
               Cow position:chr8:6193846-6194101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):150, 0

               
               
               Conread position:199-471
               
               
               Cow position:chr8:16413932-16413670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):149, 92

               
               
               Conread position:200-368
               
               
               Cow position:chr8:48422695-48422860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:122
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):148, 99

               
               
               Conread position:201-449
               
               
               Cow position:chr8:19475206-19474958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):78, 19

               
               
               Conread position:201-506
               
               
               Cow position:chr8:20682277-20682579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:214
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):42, 19

               
               
               Conread position:202-508
               
               
               Cow position:chr8:32827795-32827497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 17

               
               
               Conread position:203-451
               
               
               Cow position:chr8:48955819-48956069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):12, 93

               
               
               Conread position:206-508
               
               
               Cow position:chr8:53360346-53360048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:219
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):143, 14

               
               
               Conread position:207-452
               
               
               Cow position:chr8:60576167-60575931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):15, 64

               
               
               Conread position:208-449
               
               
               Cow position:chr8:6224548-6224313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):137, 11

               
               
               Conread position:208-464
               
               
               Cow position:chr8:19204558-19204307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):140, 41

               
               
               Conread position:209-480
               
               
               Cow position:chr8:15922379-15922114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):139, 82

               
               
               Conread position:209-508
               
               
               Cow position:chr8:942699-942994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:198
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):34, 11

               
               
               Conread position:209-508
               
               
               Cow position:chr8:25133463-25133756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):139, 17

               
               
               Conread position:210-449
               
               
               Cow position:chr8:13723298-13723531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:172
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):138, 15

               
               
               Conread position:212-449
               
               
               Cow position:chr8:4524973-4525206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:178
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):26, 93

               
               
               Conread position:213-502
               
               
               Cow position:chr8:18034033-18033743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):136, 10

               
               
               Conread position:214-397
               
               
               Cow position:chr8:36768365-36768547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):8, 87

               
               
               Conread position:214-449
               
               
               Cow position:chr8:33805408-33805648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:166
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):76, 115

               
               
               Conread position:219-451
               
               
               Cow position:chr8:55901130-55900899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):82, 129

               
               
               Conread position:220-508
               
               
               Cow position:chr8:13813525-13813239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):129, 42

               
               
               Conread position:223-449
               
               
               Cow position:chr8:17167467-17167695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:161
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):78, 46

               
               
               Conread position:224-422
               
               
               Cow position:chr8:34171778-34171973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:138
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):124, 75

               
               
               Conread position:224-434
               
               
               Cow position:chr8:46874456-46874660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):107, 75

               
               
               Conread position:224-448
               
               
               Cow position:chr8:22183614-22183840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:165
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):124, 72

               
               
               Conread position:224-448
               
               
               Cow position:chr8:40579510-40579290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):124, 82

               
               
               Conread position:224-448
               
               
               Cow position:chr8:51208675-51208907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):46, 58

               
               
               Conread position:224-448
               
               
               Cow position:chr8:61067194-61067409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):124, 46

               
               
               Conread position:224-507
               
               
               Cow position:chr8:17077729-17078004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):121, 19

               
               
               Conread position:227-449
               
               
               Cow position:chr8:53552583-53552800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):121, 69

               
               
               Conread position:227-508
               
               
               Cow position:chr8:18368186-18367908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:191
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):16, 32

               
               
               Conread position:229-449
               
               
               Cow position:chr8:52197552-52197334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:155
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):109, 62

               
               
               Conread position:230-464
               
               
               Cow position:chr8:33842664-33842894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):120, 9

               
               
               Conread position:232-449
               
               
               Cow position:chr8:49656515-49656306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):113, 22

               
               
               Conread position:232-449
               
               
               Cow position:chr8:49659041-49659252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:157
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):116, 22

               
               
               Conread position:232-508
               
               
               Cow position:chr8:43163796-43163520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):32, 69

               
               
               Conread position:234-505
               
               
               Cow position:chr8:29413803-29414068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 7

               
               
               Conread position:235-449
               
               
               Cow position:chr8:36671828-36672043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:163
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):110, 67

               
               
               Conread position:237-449
               
               
               Cow position:chr8:6910245-6910037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):111, 59

               
               
               Conread position:242-448
               
               
               Cow position:chr8:53251792-53251579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:242-506
               
               
               Cow position:chr8:20053001-20052738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):109, 54

               
               
               Conread position:242-507
               
               
               Cow position:chr8:33510696-33510437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):102, 69

               
               
               Conread position:242-507
               
               
               Cow position:chr8:34318156-34317890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):98, 64

               
               
               Conread position:242-508
               
               
               Cow position:chr8:20657443-20657178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 60

               
               
               Conread position:243-471
               
               
               Cow position:chr8:45987879-45987653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):102, 79

               
               
               Conread position:243-507
               
               
               Cow position:chr8:57915136-57915386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:181
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):128, 11

               
               
               Conread position:244-449
               
               
               Cow position:chr8:60485130-60485333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):104, 55

               
               
               Conread position:244-477
               
               
               Cow position:chr8:39969901-39969667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:183
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):105, 61

               
               
               Conread position:244-507
               
               
               Cow position:chr8:15537078-15536815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):105, 57

               
               
               Conread position:244-508
               
               
               Cow position:chr8:16957551-16957813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):105, 52

               
               
               Conread position:245-432
               
               
               Cow position:chr8:16505418-16505598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:143
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):100, 17

               
               
               Conread position:247-420
               
               
               Cow position:chr8:55283725-55283900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):55, 84

               
               
               Conread position:248-426
               
               
               Cow position:chr8:8916029-8915856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):100, 43

               
               
               Conread position:248-485
               
               
               Cow position:chr8:27294653-27294890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):22, 11

               
               
               Conread position:250-449
               
               
               Cow position:chr8:21911566-21911761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:156
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):98, 44

               
               
               Conread position:250-449
               
               
               Cow position:chr8:45859736-45859933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):98, 42

               
               
               Conread position:250-508
               
               
               Cow position:chr8:33219029-33218769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:195
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):68, 56

               
               
               Conread position:252-432
               
               
               Cow position:chr8:55974886-55974709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):145, 44

               
               
               Conread position:252-506
               
               
               Cow position:chr8:37709080-37709334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:194
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):96, 42

               
               
               Conread position:255-441
               
               
               Cow position:chr8:34774431-34774614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:143
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):48, 72

               
               
               Conread position:258-504
               
               
               Cow position:chr8:43693147-43693387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:175
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):91, 43

               
               
               Conread position:258-508
               
               
               Cow position:chr8:25075531-25075776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):87, 44

               
               
               Conread position:258-508
               
               
               Cow position:chr8:35185679-35185924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:192
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):91, 40

               
               
               Conread position:259-449
               
               
               Cow position:chr8:45126301-45126110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):90, 42

               
               
               Conread position:259-508
               
               
               Cow position:chr8:33807791-33807525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:185
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:260-486
               
               
               Cow position:chr8:19171685-19171453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:167
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):89, 46

               
               
               Conread position:261-445
               
               
               Cow position:chr8:10042591-10042769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:134
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):31, 62

               
               
               Conread position:261-449
               
               
               Cow position:chr8:21600386-21600571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):87, 38

               
               
               Conread position:262-417
               
               
               Cow position:chr8:55905237-55905394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):46, 99

               
               
               Conread position:262-448
               
               
               Cow position:chr8:61845617-61845426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:142
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:263-447
               
               
               Cow position:chr8:34042393-34042575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):85, 39

               
               
               Conread position:266-434
               
               
               Cow position:chr8:47500745-47500915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:266-508
               
               
               Cow position:chr8:19860715-19860473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:184
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):82, 40

               
               
               Conread position:270-508
               
               
               Cow position:chr8:9583597-9583361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:167
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):129, 74

               
               
               Conread position:271-448
               
               
               Cow position:chr8:61669264-61669440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:136
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):77, 34

               
               
               Conread position:273-447
               
               
               Cow position:chr8:61443265-61443092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):75, 22

               
               
               Conread position:273-448
               
               
               Cow position:chr8:38852035-38852213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):29, 45

               
               
               Conread position:281-508
               
               
               Cow position:chr8:3182420-3182641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):116, 25

               
               
               Conread position:284-448
               
               
               Cow position:chr8:28209939-28210106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:128
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:298-472
               
               
               Cow position:chr8:10846212-10846392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):50, 22

               
               
               Conread position:298-485
               
               
               Cow position:chr8:20832353-20832163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:300-508
               
               
               Cow position:chr8:44568775-44568993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:301-505
               
               
               Cow position:chr8:24426632-24426834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:147
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):47, 12

               
               
               Conread position:302-449
               
               
               Cow position:chr8:26608245-26608396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:113
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:306-443
               
               
               Cow position:chr8:51162555-51162416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:105
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:306-508
               
               
               Cow position:chr8:48086626-48086422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):16, 30

               
               
               Conread position:307-508
               
               
               Cow position:chr8:29964838-29965048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:155
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:307-508
               
               
               Cow position:chr8:42846726-42846528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:157
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):42, 30

               
               
               Conread position:308-508
               
               
               Cow position:chr8:32192672-32192880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:148
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:317-508
               
               
               Cow position:chr8:11594028-11594221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:160
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:320-449
               
               
               Cow position:chr8:5884697-5884566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:102
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:327-508
               
               
               Cow position:chr8:29004259-29004071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):22, 71

               
               
               Conread position:340-505
               
               
               Cow position:chr8:10801866-10801692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:346-508
               
               
               Cow position:chr8:13732585-13732423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):53, 109

               
               
               Conread position:346-508
               
               
               Cow position:chr8:61216814-61216651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:354-508
               
               
               Cow position:chr8:49576960-49577110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:114
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:355-504
               
               
               Cow position:chr8:45149761-45149605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:118
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):43, 16

               
               
               Conread position:396-508
               
               
               Cow position:chr8:54195869-54195983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:91
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:5-425
               
               
               Cow position:chr9:26434707-26435118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 13

               
               
               Conread position:9-373
               
               
               Cow position:chr9:17060563-17060198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:239
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):91, 12

               
               
               Conread position:10-508
               
               
               Cow position:chr9:5501200-5500702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:365
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):99, 18

               
               
               Conread position:10-508
               
               
               Cow position:chr9:29808814-29808313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:514
               
               
               Alignm identity:351
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 66

               
               
               Conread position:11-395
               
               
               Cow position:chr9:38344247-38343860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 215

               
               
               Conread position:11-505
               
               
               Cow position:chr9:14185038-14184530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:522
               
               
               Alignm identity:351
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 254

               
               
               Conread position:11-505
               
               
               Cow position:chr9:28983538-28983042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:367
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 217

               
               
               Conread position:12-408
               
               
               Cow position:chr9:34093063-34093480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:289
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):52, 350

               
               
               Conread position:12-412
               
               
               Cow position:chr9:648125-647729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):97, 54

               
               
               Conread position:12-504
               
               
               Cow position:chr9:54205977-54206464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:501
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 177

               
               
               Conread position:12-508
               
               
               Cow position:chr9:33669072-33668582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:520
               
               
               Alignm identity:365
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 176

               
               
               Conread position:15-363
               
               
               Cow position:chr9:34918936-34919258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:241
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):333, 53

               
               
               Conread position:15-376
               
               
               Cow position:chr9:20960934-20961291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 159

               
               
               Conread position:15-447
               
               
               Cow position:chr9:50080698-50081123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 283

               
               
               Conread position:15-449
               
               
               Cow position:chr9:39681706-39681254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 126

               
               
               Conread position:15-507
               
               
               Cow position:chr9:9723535-9724040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:521
               
               
               Alignm identity:353
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 150

               
               
               Conread position:16-279
               
               
               Cow position:chr9:17785112-17785379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:193
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):58, 36

               
               
               Conread position:16-284
               
               
               Cow position:chr9:10666168-10666442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:16-286
               
               
               Cow position:chr9:3594182-3594455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:196
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):91, 29

               
               
               Conread position:16-290
               
               
               Cow position:chr9:8997903-8997621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:199
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:16-295
               
               
               Cow position:chr9:30664435-30664717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):91, 45

               
               
               Conread position:16-302
               
               
               Cow position:chr9:35203246-35202938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:207
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:16-303
               
               
               Cow position:chr9:20406982-20406694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):158, 8

               
               
               Conread position:16-310
               
               
               Cow position:chr9:15843218-15843518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:191
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:16-310
               
               
               Cow position:chr9:23576131-23576432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:193
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:16-312
               
               
               Cow position:chr9:4939693-4939392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:197
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):99, 93

               
               
               Conread position:16-323
               
               
               Cow position:chr9:16218300-16218606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:224
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):93, 5

               
               
               Conread position:16-323
               
               
               Cow position:chr9:42998115-42998428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 137

               
               
               Conread position:16-338
               
               
               Cow position:chr9:18002605-18002926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 51

               
               
               Conread position:16-341
               
               
               Cow position:chr9:32812693-32812374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):158, 213

               
               
               Conread position:16-346
               
               
               Cow position:chr9:23028147-23027824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:234
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):53, 164

               
               
               Conread position:16-354
               
               
               Cow position:chr9:20739050-20738707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 173

               
               
               Conread position:16-362
               
               
               Cow position:chr9:241490-241838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:233
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):101, 250

               
               
               Conread position:16-367
               
               
               Cow position:chr9:22626072-22626425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:225
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):101, 289

               
               
               Conread position:16-373
               
               
               Cow position:chr9:12379246-12379601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:228
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):101, 197

               
               
               Conread position:16-373
               
               
               Cow position:chr9:32236606-32236248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:230
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):101, 135

               
               
               Conread position:16-373
               
               
               Cow position:chr9:34690536-34690896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:235
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):101, 251

               
               
               Conread position:16-373
               
               
               Cow position:chr9:47171854-47172216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:238
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):61, 54

               
               
               Conread position:16-389
               
               
               Cow position:chr9:1951923-1952294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 204

               
               
               Conread position:16-393
               
               
               Cow position:chr9:25964477-25964861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:256
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):93, 291

               
               
               Conread position:16-408
               
               
               Cow position:chr9:53257719-53258098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:266
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):212, 57

               
               
               Conread position:16-412
               
               
               Cow position:chr9:22114293-22114683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 30

               
               
               Conread position:16-415
               
               
               Cow position:chr9:21030664-21030257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 286

               
               
               Conread position:16-422
               
               
               Cow position:chr9:64092033-64091622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 35

               
               
               Conread position:16-425
               
               
               Cow position:chr9:62442628-62442229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 107

               
               
               Conread position:16-426
               
               
               Cow position:chr9:5161727-5162112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:279
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):94, 51

               
               
               Conread position:16-427
               
               
               Cow position:chr9:4645987-4646388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 38

               
               
               Conread position:16-429
               
               
               Cow position:chr9:8534339-8534755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 69

               
               
               Conread position:16-429
               
               
               Cow position:chr9:17929103-17928692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:296
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):150, 45

               
               
               Conread position:16-432
               
               
               Cow position:chr9:7363382-7362961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 255

               
               
               Conread position:16-432
               
               
               Cow position:chr9:30402070-30402493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 311

               
               
               Conread position:16-433
               
               
               Cow position:chr9:214116-214529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 95

               
               
               Conread position:16-434
               
               
               Cow position:chr9:3220466-3220066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):206, 92

               
               
               Conread position:16-434
               
               
               Cow position:chr9:5510071-5509655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 214

               
               
               Conread position:16-434
               
               
               Cow position:chr9:16300221-16300639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 117

               
               
               Conread position:16-434
               
               
               Cow position:chr9:17740599-17741011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 5

               
               
               Conread position:16-440
               
               
               Cow position:chr9:1950269-1949842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 66

               
               
               Conread position:16-440
               
               
               Cow position:chr9:56253248-56252825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 135

               
               
               Conread position:16-441
               
               
               Cow position:chr9:36445968-36445542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 122

               
               
               Conread position:16-442
               
               
               Cow position:chr9:59386433-59386847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 27

               
               
               Conread position:16-443
               
               
               Cow position:chr9:47905933-47906358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 146

               
               
               Conread position:16-446
               
               
               Cow position:chr9:30477435-30477856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):99, 71

               
               
               Conread position:16-447
               
               
               Cow position:chr9:5246192-5245770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 51

               
               
               Conread position:16-447
               
               
               Cow position:chr9:17410842-17411276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):218, 94

               
               
               Conread position:16-447
               
               
               Cow position:chr9:22443267-22443710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 45

               
               
               Conread position:16-447
               
               
               Cow position:chr9:42445626-42446066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 110

               
               
               Conread position:16-447
               
               
               Cow position:chr9:45756699-45756280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 29

               
               
               Conread position:16-448
               
               
               Cow position:chr9:5594847-5594419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 244

               
               
               Conread position:16-448
               
               
               Cow position:chr9:9461312-9461738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 12

               
               
               Conread position:16-448
               
               
               Cow position:chr9:21888516-21888086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 288

               
               
               Conread position:16-448
               
               
               Cow position:chr9:29841236-29840820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 160

               
               
               Conread position:16-448
               
               
               Cow position:chr9:34957705-34958140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):99, 208

               
               
               Conread position:16-448
               
               
               Cow position:chr9:44467002-44467423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 210

               
               
               Conread position:16-449
               
               
               Cow position:chr9:1520382-1520824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 293

               
               
               Conread position:16-449
               
               
               Cow position:chr9:8998702-8998264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 155

               
               
               Conread position:16-449
               
               
               Cow position:chr9:9443245-9443686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 299

               
               
               Conread position:16-449
               
               
               Cow position:chr9:21459808-21460236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 208

               
               
               Conread position:16-449
               
               
               Cow position:chr9:28726379-28726815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 109

               
               
               Conread position:16-449
               
               
               Cow position:chr9:29184790-29185222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 45

               
               
               Conread position:16-449
               
               
               Cow position:chr9:31078737-31079164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 14

               
               
               Conread position:16-449
               
               
               Cow position:chr9:33682022-33681574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):158, 37

               
               
               Conread position:16-449
               
               
               Cow position:chr9:51566154-51566580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 38

               
               
               Conread position:16-449
               
               
               Cow position:chr9:54528862-54528429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 197

               
               
               Conread position:16-449
               
               
               Cow position:chr9:55074788-55075213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 77

               
               
               Conread position:16-449
               
               
               Cow position:chr9:64050213-64050646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 66

               
               
               Conread position:16-451
               
               
               Cow position:chr9:38961090-38961515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 159

               
               
               Conread position:16-452
               
               
               Cow position:chr9:31347300-31346862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 204

               
               
               Conread position:16-452
               
               
               Cow position:chr9:62657139-62656714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 52

               
               
               Conread position:16-455
               
               
               Cow position:chr9:22433596-22434019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:289
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):93, 63

               
               
               Conread position:16-456
               
               
               Cow position:chr9:34696949-34697391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 286

               
               
               Conread position:16-457
               
               
               Cow position:chr9:8937495-8937059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 233

               
               
               Conread position:16-457
               
               
               Cow position:chr9:18215566-18216001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 81

               
               
               Conread position:16-459
               
               
               Cow position:chr9:43871319-43870879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 129

               
               
               Conread position:16-463
               
               
               Cow position:chr9:14974580-14975018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:309
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):93, 36

               
               
               Conread position:16-463
               
               
               Cow position:chr9:21462493-21462964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:333
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):45, 21

               
               
               Conread position:16-466
               
               
               Cow position:chr9:4858885-4858435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 134

               
               
               Conread position:16-469
               
               
               Cow position:chr9:3932312-3931858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 49

               
               
               Conread position:16-473
               
               
               Cow position:chr9:38546748-38546310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:304
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):61, 21

               
               
               Conread position:16-499
               
               
               Cow position:chr9:19903399-19902939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:497
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 130

               
               
               Conread position:16-499
               
               
               Cow position:chr9:34310381-34309894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:495
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 316

               
               
               Conread position:16-505
               
               
               Cow position:chr9:26057105-26057588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 73

               
               
               Conread position:16-505
               
               
               Cow position:chr9:26404136-26403636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:352
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 253

               
               
               Conread position:16-505
               
               
               Cow position:chr9:52407514-52407011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:514
               
               
               Alignm identity:356
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 30

               
               
               Conread position:16-506
               
               
               Cow position:chr9:32266048-32266527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:500
               
               
               Alignm identity:331
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):98, 108

               
               
               Conread position:16-506
               
               
               Cow position:chr9:39152340-39152821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:497
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 125

               
               
               Conread position:16-506
               
               
               Cow position:chr9:55321998-55321494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:517
               
               
               Alignm identity:354
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 19

               
               
               Conread position:16-507
               
               
               Cow position:chr9:34204478-34203987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:505
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 22

               
               
               Conread position:16-508
               
               
               Cow position:chr9:3388038-3387554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:498
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 109

               
               
               Conread position:16-508
               
               
               Cow position:chr9:5433978-5433483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:501
               
               
               Alignm identity:360
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):287, 92

               
               
               Conread position:16-508
               
               
               Cow position:chr9:6192117-6192619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:517
               
               
               Alignm identity:339
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):98, 19

               
               
               Conread position:16-508
               
               
               Cow position:chr9:6880115-6879639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:501
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 55

               
               
               Conread position:16-508
               
               
               Cow position:chr9:19382671-19382188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:501
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 38

               
               
               Conread position:16-508
               
               
               Cow position:chr9:28747178-28747680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:516
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 45

               
               
               Conread position:16-508
               
               
               Cow position:chr9:28948200-28947724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:500
               
               
               Alignm identity:358
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 97

               
               
               Conread position:16-508
               
               
               Cow position:chr9:39428468-39428943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:496
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 38

               
               
               Conread position:16-508
               
               
               Cow position:chr9:41680080-41679600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:499
               
               
               Alignm identity:353
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 50

               
               
               Conread position:16-508
               
               
               Cow position:chr9:41789634-41789140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 121

               
               
               Conread position:16-508
               
               
               Cow position:chr9:42498175-42497666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:352
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 14

               
               
               Conread position:16-508
               
               
               Cow position:chr9:50606606-50607092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:501
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 159

               
               
               Conread position:17-358
               
               
               Cow position:chr9:26391110-26390776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):331, 91

               
               
               Conread position:17-412
               
               
               Cow position:chr9:6089449-6089041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 155

               
               
               Conread position:17-432
               
               
               Cow position:chr9:11830354-11829939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:284
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):98, 195

               
               
               Conread position:17-448
               
               
               Cow position:chr9:11313168-11313598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:294
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):62, 50

               
               
               Conread position:17-449
               
               
               Cow position:chr9:33218606-33219034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 204

               
               
               Conread position:17-449
               
               
               Cow position:chr9:35167519-35167091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 73

               
               
               Conread position:17-451
               
               
               Cow position:chr9:7410128-7409676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:18-316
               
               
               Cow position:chr9:12321716-12322008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):148, 55

               
               
               Conread position:18-320
               
               
               Cow position:chr9:18093315-18093625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:216
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):12, 136

               
               
               Conread position:18-340
               
               
               Cow position:chr9:8612643-8612304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:239
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):47, 27

               
               
               Conread position:18-373
               
               
               Cow position:chr9:3004538-3004180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:229
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):81, 271

               
               
               Conread position:18-373
               
               
               Cow position:chr9:56300795-56300441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:225
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):99, 258

               
               
               Conread position:18-425
               
               
               Cow position:chr9:24997159-24997578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 43

               
               
               Conread position:18-443
               
               
               Cow position:chr9:5319974-5319543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 203

               
               
               Conread position:18-449
               
               
               Cow position:chr9:9552430-9552006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 55

               
               
               Conread position:19-446
               
               
               Cow position:chr9:10308665-10309078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 9

               
               
               Conread position:21-422
               
               
               Cow position:chr9:24873182-24872778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:290
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):90, 23

               
               
               Conread position:21-449
               
               
               Cow position:chr9:6933730-6934158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 134

               
               
               Conread position:21-449
               
               
               Cow position:chr9:9199443-9199864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 199

               
               
               Conread position:21-452
               
               
               Cow position:chr9:5218838-5219260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:290
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):90, 152

               
               
               Conread position:21-508
               
               
               Cow position:chr9:5393392-5392911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:337
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):90, 203

               
               
               Conread position:23-505
               
               
               Cow position:chr9:47926245-47925788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 31

               
               
               Conread position:23-508
               
               
               Cow position:chr9:5226825-5227322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:501
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 296

               
               
               Conread position:25-422
               
               
               Cow position:chr9:32677020-32676619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):149, 81

               
               
               Conread position:26-434
               
               
               Cow position:chr9:13169336-13169733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:280
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):75, 44

               
               
               Conread position:27-449
               
               
               Cow position:chr9:15805585-15806008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 219

               
               
               Conread position:28-506
               
               
               Cow position:chr9:25469350-25468914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:326
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):321, 85

               
               
               Conread position:29-471
               
               
               Cow position:chr9:2863762-2863338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:298
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):144, 36

               
               
               Conread position:30-431
               
               
               Cow position:chr9:54924964-54924553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 17

               
               
               Conread position:34-449
               
               
               Cow position:chr9:15215346-15215772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 271

               
               
               Conread position:36-449
               
               
               Cow position:chr9:7634595-7634186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 132

               
               
               Conread position:36-449
               
               
               Cow position:chr9:22151761-22152170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 156

               
               
               Conread position:37-449
               
               
               Cow position:chr9:64155530-64155936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 188

               
               
               Conread position:38-449
               
               
               Cow position:chr9:41416675-41416248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:287
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):73, 143

               
               
               Conread position:39-449
               
               
               Cow position:chr9:29006884-29006473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 120

               
               
               Conread position:47-508
               
               
               Cow position:chr9:54681817-54681359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 49

               
               
               Conread position:51-434
               
               
               Cow position:chr9:36490583-36490971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:260
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):58, 120

               
               
               Conread position:55-353
               
               
               Cow position:chr9:64516789-64517086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):56, 74

               
               
               Conread position:57-449
               
               
               Cow position:chr9:10011108-10010730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:269
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):12, 35

               
               
               Conread position:65-308
               
               
               Cow position:chr9:1984224-1984473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):46, 91

               
               
               Conread position:65-430
               
               
               Cow position:chr9:62131882-62132250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:246
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):36, 8

               
               
               Conread position:65-449
               
               
               Cow position:chr9:22696514-22696138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 106

               
               
               Conread position:65-449
               
               
               Cow position:chr9:40542413-40542051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:272
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):12, 21

               
               
               Conread position:65-508
               
               
               Cow position:chr9:43037781-43037339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 162

               
               
               Conread position:66-358
               
               
               Cow position:chr9:29034739-29035029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):36, 108

               
               
               Conread position:66-392
               
               
               Cow position:chr9:35533655-35533980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:228
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):45, 121

               
               
               Conread position:66-449
               
               
               Cow position:chr9:32306943-32307316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):100, 42

               
               
               Conread position:66-449
               
               
               Cow position:chr9:55084000-55084386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 158

               
               
               Conread position:66-449
               
               
               Cow position:chr9:64559592-64559967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:261
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):45, 28

               
               
               Conread position:66-480
               
               
               Cow position:chr9:15950858-15951275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 160

               
               
               Conread position:66-505
               
               
               Cow position:chr9:20900834-20901277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:303
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):45, 88

               
               
               Conread position:66-508
               
               
               Cow position:chr9:58669675-58669238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:294
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):42, 13

               
               
               Conread position:68-463
               
               
               Cow position:chr9:37098939-37099332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 37

               
               
               Conread position:70-318
               
               
               Cow position:chr9:8600629-8600373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):39, 88

               
               
               Conread position:70-332
               
               
               Cow position:chr9:36067198-36066939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:190
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):41, 102

               
               
               Conread position:70-395
               
               
               Cow position:chr9:35850191-35849874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 151

               
               
               Conread position:70-434
               
               
               Cow position:chr9:41513912-41513562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:255
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):39, 118

               
               
               Conread position:70-447
               
               
               Cow position:chr9:33940900-33940523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 233

               
               
               Conread position:70-448
               
               
               Cow position:chr9:5327544-5327174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):278, 37

               
               
               Conread position:70-449
               
               
               Cow position:chr9:17871815-17872195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 121

               
               
               Conread position:70-508
               
               
               Cow position:chr9:20091333-20090898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 55

               
               
               Conread position:70-508
               
               
               Cow position:chr9:56453625-56453184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:307
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):29, 12

               
               
               Conread position:71-402
               
               
               Cow position:chr9:24850535-24850211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:226
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):42, 155

               
               
               Conread position:71-404
               
               
               Cow position:chr9:49764948-49764621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 152

               
               
               Conread position:71-407
               
               
               Cow position:chr9:51311962-51311631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:235
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):71, 37

               
               
               Conread position:71-433
               
               
               Cow position:chr9:47875656-47876028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:258
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):44, 160

               
               
               Conread position:71-434
               
               
               Cow position:chr9:3070131-3070479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 117

               
               
               Conread position:71-449
               
               
               Cow position:chr9:8338322-8337942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 162

               
               
               Conread position:71-449
               
               
               Cow position:chr9:9405763-9406138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:251
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):38, 102

               
               
               Conread position:71-449
               
               
               Cow position:chr9:26278885-26279254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 37

               
               
               Conread position:71-490
               
               
               Cow position:chr9:8951194-8950770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 96

               
               
               Conread position:71-495
               
               
               Cow position:chr9:11102531-11102930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:283
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):274, 37

               
               
               Conread position:73-295
               
               
               Cow position:chr9:38875289-38875510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):103, 9

               
               
               Conread position:73-408
               
               
               Cow position:chr9:52787246-52787582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 150

               
               
               Conread position:73-433
               
               
               Cow position:chr9:29825319-29824961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:244
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):34, 47

               
               
               Conread position:73-449
               
               
               Cow position:chr9:60110524-60110165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:263
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):17, 83

               
               
               Conread position:73-506
               
               
               Cow position:chr9:34468303-34468719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 57

               
               
               Conread position:73-508
               
               
               Cow position:chr9:8599893-8599463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 152

               
               
               Conread position:74-449
               
               
               Cow position:chr9:34287079-34286714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):275, 34

               
               
               Conread position:77-304
               
               
               Cow position:chr9:45170883-45171108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):32, 86

               
               
               Conread position:77-412
               
               
               Cow position:chr9:5029801-5029462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:233
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):32, 233

               
               
               Conread position:77-449
               
               
               Cow position:chr9:13670923-13670548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 149

               
               
               Conread position:77-508
               
               
               Cow position:chr9:4630388-4629947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:299
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):32, 76

               
               
               Conread position:77-508
               
               
               Cow position:chr9:4861675-4861234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 33

               
               
               Conread position:79-321
               
               
               Cow position:chr9:30189382-30189137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:177
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):24, 35

               
               
               Conread position:79-434
               
               
               Cow position:chr9:44914812-44915167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 86

               
               
               Conread position:79-508
               
               
               Cow position:chr9:43912213-43911790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 136

               
               
               Conread position:81-419
               
               
               Cow position:chr9:58853798-58853456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:237
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):24, 132

               
               
               Conread position:81-434
               
               
               Cow position:chr9:29684427-29684074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:239
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):74, 114

               
               
               Conread position:81-447
               
               
               Cow position:chr9:52001289-52000936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 39

               
               
               Conread position:81-451
               
               
               Cow position:chr9:41283310-41282928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 65

               
               
               Conread position:81-508
               
               
               Cow position:chr9:9823237-9823643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 83

               
               
               Conread position:82-448
               
               
               Cow position:chr9:37069288-37069643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 218

               
               
               Conread position:82-508
               
               
               Cow position:chr9:2910399-2910003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:280
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):27, 66

               
               
               Conread position:82-508
               
               
               Cow position:chr9:5756722-5757139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 138

               
               
               Conread position:83-446
               
               
               Cow position:chr9:58204943-58204591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 29

               
               
               Conread position:83-449
               
               
               Cow position:chr9:55287611-55287974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 82

               
               
               Conread position:84-423
               
               
               Cow position:chr9:44108551-44108892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:245
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):25, 70

               
               
               Conread position:89-435
               
               
               Cow position:chr9:32625270-32624937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:245
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):26, 42

               
               
               Conread position:89-452
               
               
               Cow position:chr9:8288892-8288530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 139

               
               
               Conread position:89-508
               
               
               Cow position:chr9:5209853-5209440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 15

               
               
               Conread position:89-508
               
               
               Cow position:chr9:19637365-19637781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:300
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):20, 5

               
               
               Conread position:91-508
               
               
               Cow position:chr9:23043047-23042637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 56

               
               
               Conread position:91-508
               
               
               Cow position:chr9:47869278-47868862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:296
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):20, 133

               
               
               Conread position:92-508
               
               
               Cow position:chr9:8657166-8657574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 17

               
               
               Conread position:94-412
               
               
               Cow position:chr9:22638366-22638054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):8, 15

               
               
               Conread position:94-440
               
               
               Cow position:chr9:11068200-11068554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:246
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):15, 71

               
               
               Conread position:94-469
               
               
               Cow position:chr9:9753130-9753495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:264
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):121, 16

               
               
               Conread position:95-368
               
               
               Cow position:chr9:4128517-4128784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:188
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):12, 131

               
               
               Conread position:96-311
               
               
               Cow position:chr9:41995981-41995761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):13, 212

               
               
               Conread position:96-316
               
               
               Cow position:chr9:41653056-41652832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:163
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):13, 129

               
               
               Conread position:96-447
               
               
               Cow position:chr9:8724061-8723711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:248
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):68, 102

               
               
               Conread position:96-449
               
               
               Cow position:chr9:33598248-33597901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 204

               
               
               Conread position:97-421
               
               
               Cow position:chr9:44553009-44552690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:234
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):132, 11

               
               
               Conread position:98-393
               
               
               Cow position:chr9:6225192-6225482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):120, 17

               
               
               Conread position:98-393
               
               
               Cow position:chr9:48118440-48118717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:205
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):250, 12

               
               
               Conread position:98-418
               
               
               Cow position:chr9:23541153-23541445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:235
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):13, 73

               
               
               Conread position:98-448
               
               
               Cow position:chr9:34901854-34902185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:251
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):49, 10

               
               
               Conread position:99-431
               
               
               Cow position:chr9:29108801-29108470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 43

               
               
               Conread position:100-449
               
               
               Cow position:chr9:34374667-34375009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:242
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):7, 58

               
               
               Conread position:109-508
               
               
               Cow position:chr9:388763-389159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):106, 77

               
               
               Conread position:110-443
               
               
               Cow position:chr9:55890060-55889736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:241
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):68, 107

               
               
               Conread position:110-446
               
               
               Cow position:chr9:38846098-38846415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:243
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):64, 110

               
               
               Conread position:110-448
               
               
               Cow position:chr9:25922074-25921739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:235
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):42, 18

               
               
               Conread position:110-449
               
               
               Cow position:chr9:50139532-50139200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:240
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):119, 62

               
               
               Conread position:113-441
               
               
               Cow position:chr9:39577982-39577662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:235
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):102, 73

               
               
               Conread position:113-448
               
               
               Cow position:chr9:33119634-33119972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 110

               
               
               Conread position:113-449
               
               
               Cow position:chr9:18216852-18217184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 116

               
               
               Conread position:116-449
               
               
               Cow position:chr9:52131263-52130930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:222
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):103, 26

               
               
               Conread position:117-360
               
               
               Cow position:chr9:29092048-29091797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):59, 196

               
               
               Conread position:117-449
               
               
               Cow position:chr9:766906-767237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:226
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):54, 105

               
               
               Conread position:117-449
               
               
               Cow position:chr9:1729432-1729759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:239
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):184, 69

               
               
               Conread position:118-346
               
               
               Cow position:chr9:40604193-40603965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):56, 186

               
               
               Conread position:118-448
               
               
               Cow position:chr9:6840254-6839909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:236
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):56, 112

               
               
               Conread position:119-449
               
               
               Cow position:chr9:3186385-3186041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:230
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):7, 187

               
               
               Conread position:120-447
               
               
               Cow position:chr9:56011738-56011416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:223
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):42, 142

               
               
               Conread position:121-505
               
               
               Cow position:chr9:26115658-26116044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:247
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):10, 21

               
               
               Conread position:122-508
               
               
               Cow position:chr9:15006512-15006890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 102

               
               
               Conread position:123-448
               
               
               Cow position:chr9:11319394-11319718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 99

               
               
               Conread position:126-443
               
               
               Cow position:chr9:15225055-15225375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:230
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):93, 60

               
               
               Conread position:129-383
               
               
               Cow position:chr9:42901279-42901027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):38, 84

               
               
               Conread position:129-508
               
               
               Cow position:chr9:4580188-4580546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:258
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):219, 57

               
               
               Conread position:132-377
               
               
               Cow position:chr9:33038229-33038473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):42, 119

               
               
               Conread position:132-426
               
               
               Cow position:chr9:35128723-35128417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):167, 40

               
               
               Conread position:138-432
               
               
               Cow position:chr9:30652487-30652776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:208
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):35, 16

               
               
               Conread position:140-447
               
               
               Cow position:chr9:28354739-28354434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):208, 80

               
               
               Conread position:141-397
               
               
               Cow position:chr9:26440576-26440844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):34, 191

               
               
               Conread position:146-447
               
               
               Cow position:chr9:27279528-27279226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:211
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):40, 15

               
               
               Conread position:146-457
               
               
               Cow position:chr9:42062326-42062006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:218
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):105, 15

               
               
               Conread position:146-507
               
               
               Cow position:chr9:42264431-42264060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:256
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):74, 15

               
               
               Conread position:147-448
               
               
               Cow position:chr9:43444009-43443720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:222
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):24, 43

               
               
               Conread position:148-433
               
               
               Cow position:chr9:11364106-11363828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):6, 14

               
               
               Conread position:149-434
               
               
               Cow position:chr9:19493252-19493536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:208
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):119, 12

               
               
               Conread position:154-434
               
               
               Cow position:chr9:49417194-49416917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):194, 140

               
               
               Conread position:154-448
               
               
               Cow position:chr9:31557521-31557811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):29, 104

               
               
               Conread position:154-508
               
               
               Cow position:chr9:42037859-42037510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 10

               
               
               Conread position:155-434
               
               
               Cow position:chr9:60027401-60027127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:195
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):184, 23

               
               
               Conread position:155-503
               
               
               Cow position:chr9:8920204-8919847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:246
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):156, 218

               
               
               Conread position:156-448
               
               
               Cow position:chr9:10980911-10981196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:201
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):16, 70

               
               
               Conread position:156-475
               
               
               Cow position:chr9:3738018-3738336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:217
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):194, 5

               
               
               Conread position:157-397
               
               
               Cow position:chr9:25805038-25804800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:168
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):114, 140

               
               
               Conread position:158-336
               
               
               Cow position:chr9:14358365-14358193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):133, 0

               
               
               Conread position:158-448
               
               
               Cow position:chr9:46242061-46242341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:194
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):57, 150

               
               
               Conread position:158-451
               
               
               Cow position:chr9:1973145-1972861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:200
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):190, 144

               
               
               Conread position:159-508
               
               
               Cow position:chr9:27292082-27292419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:237
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):150, 18

               
               
               Conread position:161-389
               
               
               Cow position:chr9:31215931-31215704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):75, 35

               
               
               Conread position:161-449
               
               
               Cow position:chr9:37678087-37677809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:200
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):56, 82

               
               
               Conread position:161-499
               
               
               Cow position:chr9:51720703-51721040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):238, 19

               
               
               Conread position:161-501
               
               
               Cow position:chr9:48133929-48133596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:229
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):59, 143

               
               
               Conread position:161-507
               
               
               Cow position:chr9:17799827-17799474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:246
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):184, 34

               
               
               Conread position:164-449
               
               
               Cow position:chr9:9815614-9815328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):23, 114

               
               
               Conread position:164-507
               
               
               Cow position:chr9:10650104-10650449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:232
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):27, 85

               
               
               Conread position:165-446
               
               
               Cow position:chr9:50543224-50543509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):21, 50

               
               
               Conread position:165-508
               
               
               Cow position:chr9:11123292-11123642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:246
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):183, 25

               
               
               Conread position:169-405
               
               
               Cow position:chr9:1371124-1370887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):70, 17

               
               
               Conread position:171-508
               
               
               Cow position:chr9:32115421-32115742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):174, 15

               
               
               Conread position:172-449
               
               
               Cow position:chr9:62668441-62668165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):44, 79

               
               
               Conread position:173-422
               
               
               Cow position:chr9:23943481-23943221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):49, 160

               
               
               Conread position:174-399
               
               
               Cow position:chr9:16121355-16121134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):94, 62

               
               
               Conread position:174-473
               
               
               Cow position:chr9:34106909-34106605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:226
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):77, 46

               
               
               Conread position:174-506
               
               
               Cow position:chr9:5575506-5575177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:230
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):69, 46

               
               
               Conread position:175-432
               
               
               Cow position:chr9:28451972-28452236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):143, 45

               
               
               Conread position:175-448
               
               
               Cow position:chr9:31638455-31638740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:198
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):173, 127

               
               
               Conread position:176-473
               
               
               Cow position:chr9:41957988-41957698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:207
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):173, 12

               
               
               Conread position:180-336
               
               
               Cow position:chr9:38581152-38581002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):139, 15

               
               
               Conread position:180-508
               
               
               Cow position:chr9:11168911-11168583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:238
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):168, 116

               
               
               Conread position:190-432
               
               
               Cow position:chr9:12910231-12910469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):155, 29

               
               
               Conread position:190-449
               
               
               Cow position:chr9:35105610-35105875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:193
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):44, 117

               
               
               Conread position:191-397
               
               
               Cow position:chr9:1755972-1756177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):38, 101

               
               
               Conread position:192-404
               
               
               Cow position:chr9:50202738-50202533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:156
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):156, 28

               
               
               Conread position:192-434
               
               
               Cow position:chr9:26477385-26477147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):91, 65

               
               
               Conread position:192-445
               
               
               Cow position:chr9:23265161-23264913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:163
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:192-446
               
               
               Cow position:chr9:12225812-12226059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:183
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):156, 39

               
               
               Conread position:192-508
               
               
               Cow position:chr9:25557134-25556821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:222
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):157, 27

               
               
               Conread position:193-506
               
               
               Cow position:chr9:20897069-20896759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:227
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):59, 27

               
               
               Conread position:196-447
               
               
               Cow position:chr9:23261598-23261350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:174
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):149, 25

               
               
               Conread position:196-449
               
               
               Cow position:chr9:5456009-5456260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):22, 98

               
               
               Conread position:196-504
               
               
               Cow position:chr9:24837695-24837402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):47, 91

               
               
               Conread position:196-508
               
               
               Cow position:chr9:55562659-55562353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:228
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):157, 24

               
               
               Conread position:198-434
               
               
               Cow position:chr9:40215406-40215177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):24, 97

               
               
               Conread position:198-449
               
               
               Cow position:chr9:17518326-17518574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):18, 83

               
               
               Conread position:198-450
               
               
               Cow position:chr9:3774327-3774079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):27, 99

               
               
               Conread position:198-508
               
               
               Cow position:chr9:6851905-6852213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:225
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):150, 108

               
               
               Conread position:201-449
               
               
               Cow position:chr9:39011317-39011554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:171
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):148, 18

               
               
               Conread position:202-448
               
               
               Cow position:chr9:33697185-33696952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:177
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):146, 17

               
               
               Conread position:209-440
               
               
               Cow position:chr9:43937091-43936868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):140, 10

               
               
               Conread position:210-485
               
               
               Cow position:chr9:1867604-1867327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:204
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):15, 92

               
               
               Conread position:211-508
               
               
               Cow position:chr9:5172483-5172190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:198
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):84, 122

               
               
               Conread position:214-449
               
               
               Cow position:chr9:4262945-4263174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):183, 90

               
               
               Conread position:214-451
               
               
               Cow position:chr9:34284095-34283867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:182
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):114, 57

               
               
               Conread position:220-449
               
               
               Cow position:chr9:1877864-1878087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:162
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):12, 76

               
               
               Conread position:220-508
               
               
               Cow position:chr9:5399279-5398992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:209
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):125, 84

               
               
               Conread position:223-390
               
               
               Cow position:chr9:35592153-35591986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:127
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):36, 85

               
               
               Conread position:224-434
               
               
               Cow position:chr9:52839749-52839950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:155
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):125, 76

               
               
               Conread position:224-447
               
               
               Cow position:chr9:32669810-32670030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):124, 82

               
               
               Conread position:224-452
               
               
               Cow position:chr9:10819695-10819916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):172, 72

               
               
               Conread position:224-508
               
               
               Cow position:chr9:41486103-41486376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:198
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):124, 72

               
               
               Conread position:227-434
               
               
               Cow position:chr9:40005610-40005404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):121, 84

               
               
               Conread position:227-447
               
               
               Cow position:chr9:44396794-44396579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):16, 66

               
               
               Conread position:229-423
               
               
               Cow position:chr9:53326618-53326810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):167, 115

               
               
               Conread position:229-507
               
               
               Cow position:chr9:5899829-5900115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):119, 62

               
               
               Conread position:234-449
               
               
               Cow position:chr9:20755627-20755841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):17, 58

               
               
               Conread position:242-402
               
               
               Cow position:chr9:8306973-8306816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:123
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):33, 54

               
               
               Conread position:242-449
               
               
               Cow position:chr9:34410276-34410481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:142
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):106, 54

               
               
               Conread position:242-508
               
               
               Cow position:chr9:5340725-5340474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:181
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):103, 73

               
               
               Conread position:243-449
               
               
               Cow position:chr9:52598605-52598806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):105, 51

               
               
               Conread position:244-447
               
               
               Cow position:chr9:33584565-33584768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):105, 56

               
               
               Conread position:244-449
               
               
               Cow position:chr9:9311978-9311773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:149
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):104, 57

               
               
               Conread position:245-449
               
               
               Cow position:chr9:38941315-38941517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:148
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):100, 57

               
               
               Conread position:248-427
               
               
               Cow position:chr9:26310622-26310443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):97, 56

               
               
               Conread position:248-434
               
               
               Cow position:chr9:51557379-51557556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):148, 46

               
               
               Conread position:248-508
               
               
               Cow position:chr9:2888097-2887831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:192
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):66, 44

               
               
               Conread position:250-443
               
               
               Cow position:chr9:23955872-23956059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):99, 43

               
               
               Conread position:250-449
               
               
               Cow position:chr9:38645231-38645429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:144
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):98, 51

               
               
               Conread position:250-450
               
               
               Cow position:chr9:9358924-9358724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):32, 63

               
               
               Conread position:250-463
               
               
               Cow position:chr9:34725399-34725608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):68, 51

               
               
               Conread position:250-480
               
               
               Cow position:chr9:16118838-16118613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:161
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):99, 55

               
               
               Conread position:251-460
               
               
               Cow position:chr9:28379080-28378872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:154
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):22, 43

               
               
               Conread position:252-448
               
               
               Cow position:chr9:22461631-22461816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):97, 46

               
               
               Conread position:254-433
               
               
               Cow position:chr9:40776905-40776729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:135
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):94, 45

               
               
               Conread position:254-434
               
               
               Cow position:chr9:55532922-55532743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):94, 27

               
               
               Conread position:254-449
               
               
               Cow position:chr9:45171111-45171308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:144
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):91, 45

               
               
               Conread position:256-504
               
               
               Cow position:chr9:25400091-25400345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:188
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):141, 88

               
               
               Conread position:263-451
               
               
               Cow position:chr9:41781752-41781567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:144
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):85, 18

               
               
               Conread position:266-434
               
               
               Cow position:chr9:13761198-13761029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):83, 35

               
               
               Conread position:266-447
               
               
               Cow position:chr9:34484695-34484512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):39, 8

               
               
               Conread position:266-449
               
               
               Cow position:chr9:64064261-64064448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:137
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:267-449
               
               
               Cow position:chr9:23797331-23797151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):82, 13

               
               
               Conread position:267-449
               
               
               Cow position:chr9:43342424-43342246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):81, 16

               
               
               Conread position:268-434
               
               
               Cow position:chr9:35832522-35832689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:119
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):80, 34

               
               
               Conread position:271-433
               
               
               Cow position:chr9:42478391-42478551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:122
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):77, 28

               
               
               Conread position:271-456
               
               
               Cow position:chr9:8834039-8834219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):126, 30

               
               
               Conread position:272-504
               
               
               Cow position:chr9:20200383-20200160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):78, 24

               
               
               Conread position:274-434
               
               
               Cow position:chr9:5110947-5110789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):74, 7

               
               
               Conread position:274-449
               
               
               Cow position:chr9:24652499-24652319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:275-449
               
               
               Cow position:chr9:3343835-3343664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:132
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):73, 19

               
               
               Conread position:280-508
               
               
               Cow position:chr9:41785293-41785059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:168
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):69, 25

               
               
               Conread position:289-508
               
               
               Cow position:chr9:24429020-24429239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):60, 12

               
               
               Conread position:290-508
               
               
               Cow position:chr9:44584670-44584439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:164
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:297-505
               
               
               Cow position:chr9:12499077-12498870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:149
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):52, 5

               
               
               Conread position:298-455
               
               
               Cow position:chr9:31098816-31098976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):34, 150

               
               
               Conread position:299-427
               
               
               Cow position:chr9:47214479-47214608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:103
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):49, 13

               
               
               Conread position:300-508
               
               
               Cow position:chr9:7805895-7806116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):50, 195

               
               
               Conread position:306-449
               
               
               Cow position:chr9:41964675-41964819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:109
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:307-508
               
               
               Cow position:chr9:33347431-33347643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:163
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:309-508
               
               
               Cow position:chr9:4256929-4257139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):37, 15

               
               
               Conread position:309-508
               
               
               Cow position:chr9:26645982-26645777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):40, 14

               
               
               Conread position:312-508
               
               
               Cow position:chr9:27347850-27347656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:145
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):140, 37

               
               
               Conread position:312-508
               
               
               Cow position:chr9:42586503-42586710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):37, 8

               
               
               Conread position:314-508
               
               
               Cow position:chr9:18439120-18439317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):37, 46

               
               
               Conread position:316-508
               
               
               Cow position:chr9:60355162-60355362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:145
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:317-508
               
               
               Cow position:chr9:26559564-26559757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:147
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):32, 6

               
               
               Conread position:317-508
               
               
               Cow position:chr9:53794484-53794671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):6, 0

               
               
               Conread position:318-438
               
               
               Cow position:chr9:48157126-48157005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:95
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:320-449
               
               
               Cow position:chr9:24243675-24243808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:105
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:320-449
               
               
               Cow position:chr9:34014203-34014334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:101
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:327-448
               
               
               Cow position:chr9:20637412-20637290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:96
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:327-449
               
               
               Cow position:chr9:27345545-27345668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:98
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):21, 113

               
               
               Conread position:327-508
               
               
               Cow position:chr9:38580894-38580715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):18, 138

               
               
               Conread position:328-508
               
               
               Cow position:chr9:5829102-5828927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:141
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):21, 101

               
               
               Conread position:329-440
               
               
               Cow position:chr9:52807368-52807480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:94
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:340-449
               
               
               Cow position:chr9:34707286-34707396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:111
               
               
               Alignm identity:89
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:346-473
               
               
               Cow position:chr9:38777046-38777174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:97
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:346-508
               
               
               Cow position:chr9:60549392-60549556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:350-508
               
               
               Cow position:chr9:52648842-52649008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:356-508
               
               
               Cow position:chr9:34431829-34431677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:121
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):41, 95

               
               
               Conread position:356-508
               
               
               Cow position:chr9:62330989-62331141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-448
               
               
               Cow position:chrX:25035692-25035242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 51

               
               
               Conread position:5-399
               
               
               Cow position:chrX:21833583-21833979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:246
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):112, 293

               
               
               Conread position:11-433
               
               
               Cow position:chrX:28111199-28111634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 222

               
               
               Conread position:11-447
               
               
               Cow position:chrX:30162701-30163144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):100, 209

               
               
               Conread position:11-457
               
               
               Cow position:chrX:34238425-34238870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 212

               
               
               Conread position:12-448
               
               
               Cow position:chrX:11561848-11562286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:306
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):34, 223

               
               
               Conread position:13-447
               
               
               Cow position:chrX:5872022-5872456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 48

               
               
               Conread position:15-320
               
               
               Cow position:chrX:35609694-35610002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 289

               
               
               Conread position:15-397
               
               
               Cow position:chrX:40827039-40826663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:260
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):101, 94

               
               
               Conread position:15-434
               
               
               Cow position:chrX:40481164-40480741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 9

               
               
               Conread position:15-448
               
               
               Cow position:chrX:45430310-45429882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:286
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):63, 208

               
               
               Conread position:16-279
               
               
               Cow position:chrX:6372890-6373158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:16-284
               
               
               Cow position:chrX:2104114-2104384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:16-286
               
               
               Cow position:chrX:38967361-38967628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:197
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):95, 29

               
               
               Conread position:16-295
               
               
               Cow position:chrX:40452504-40452220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 215

               
               
               Conread position:16-297
               
               
               Cow position:chrX:12115750-12116037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):82, 54

               
               
               Conread position:16-304
               
               
               Cow position:chrX:35041931-35042224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):93, 38

               
               
               Conread position:16-305
               
               
               Cow position:chrX:28847167-28846883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 38

               
               
               Conread position:16-310
               
               
               Cow position:chrX:30199283-30198983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:16-312
               
               
               Cow position:chrX:14846365-14846064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):83, 250

               
               
               Conread position:16-312
               
               
               Cow position:chrX:16466009-16466311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):83, 290

               
               
               Conread position:16-324
               
               
               Cow position:chrX:36692944-36693256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:221
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):93, 223

               
               
               Conread position:16-343
               
               
               Cow position:chrX:17271580-17271248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):99, 210

               
               
               Conread position:16-343
               
               
               Cow position:chrX:38439182-38439514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 210

               
               
               Conread position:16-346
               
               
               Cow position:chrX:47379758-47379431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:232
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):93, 102

               
               
               Conread position:16-349
               
               
               Cow position:chrX:3653472-3653800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:216
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):86, 191

               
               
               Conread position:16-360
               
               
               Cow position:chrX:35681044-35681393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 146

               
               
               Conread position:16-361
               
               
               Cow position:chrX:48247124-48246795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:242
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):51, 12

               
               
               Conread position:16-362
               
               
               Cow position:chrX:37958206-37958554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:227
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):101, 294

               
               
               Conread position:16-362
               
               
               Cow position:chrX:48243743-48243413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:237
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):83, 144

               
               
               Conread position:16-363
               
               
               Cow position:chrX:9085624-9085276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:225
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):101, 266

               
               
               Conread position:16-364
               
               
               Cow position:chrX:28845553-28845888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 137

               
               
               Conread position:16-367
               
               
               Cow position:chrX:8434498-8434145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:223
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):101, 276

               
               
               Conread position:16-369
               
               
               Cow position:chrX:7718565-7718909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:257
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):89, 45

               
               
               Conread position:16-369
               
               
               Cow position:chrX:19188645-19188991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 180

               
               
               Conread position:16-369
               
               
               Cow position:chrX:21592995-21593347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 45

               
               
               Conread position:16-372
               
               
               Cow position:chrX:13785669-13785297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:258
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):51, 104

               
               
               Conread position:16-373
               
               
               Cow position:chrX:4343458-4343817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:229
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):101, 276

               
               
               Conread position:16-373
               
               
               Cow position:chrX:7444793-7445151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:231
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):114, 93

               
               
               Conread position:16-373
               
               
               Cow position:chrX:11145629-11145270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:228
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):101, 250

               
               
               Conread position:16-373
               
               
               Cow position:chrX:15577932-15577573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:231
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):101, 250

               
               
               Conread position:16-373
               
               
               Cow position:chrX:19196809-19196450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:228
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):101, 276

               
               
               Conread position:16-373
               
               
               Cow position:chrX:24969107-24968748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:231
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):101, 250

               
               
               Conread position:16-373
               
               
               Cow position:chrX:25232295-25232657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 210

               
               
               Conread position:16-373
               
               
               Cow position:chrX:29841460-29841103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:233
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):83, 125

               
               
               Conread position:16-373
               
               
               Cow position:chrX:37816297-37816656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:231
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):101, 289

               
               
               Conread position:16-376
               
               
               Cow position:chrX:46297369-46297731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:231
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):101, 250

               
               
               Conread position:16-379
               
               
               Cow position:chrX:41743622-41743984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 164

               
               
               Conread position:16-394
               
               
               Cow position:chrX:42507935-42507563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:263
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):98, 45

               
               
               Conread position:16-397
               
               
               Cow position:chrX:23299663-23300046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:257
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):93, 318

               
               
               Conread position:16-397
               
               
               Cow position:chrX:31949222-31948847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 158

               
               
               Conread position:16-397
               
               
               Cow position:chrX:34663150-34662758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:272
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):60, 162

               
               
               Conread position:16-398
               
               
               Cow position:chrX:12145804-12146187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:245
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):101, 54

               
               
               Conread position:16-398
               
               
               Cow position:chrX:29356296-29356680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:240
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):101, 276

               
               
               Conread position:16-399
               
               
               Cow position:chrX:4905280-4904897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:247
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):101, 189

               
               
               Conread position:16-399
               
               
               Cow position:chrX:20709784-20710164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 45

               
               
               Conread position:16-399
               
               
               Cow position:chrX:23264728-23264343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:254
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):101, 276

               
               
               Conread position:16-399
               
               
               Cow position:chrX:26754920-26754552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:248
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):101, 54

               
               
               Conread position:16-399
               
               
               Cow position:chrX:32584104-32583719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:245
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):93, 293

               
               
               Conread position:16-408
               
               
               Cow position:chrX:15485916-15485534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:268
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):93, 45

               
               
               Conread position:16-423
               
               
               Cow position:chrX:38936408-38936815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 206

               
               
               Conread position:16-425
               
               
               Cow position:chrX:11844529-11844124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):305, 45

               
               
               Conread position:16-425
               
               
               Cow position:chrX:23564088-23563674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 283

               
               
               Conread position:16-425
               
               
               Cow position:chrX:26625976-26625554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 220

               
               
               Conread position:16-426
               
               
               Cow position:chrX:30133615-30133200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 134

               
               
               Conread position:16-427
               
               
               Cow position:chrX:11082905-11082503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 206

               
               
               Conread position:16-434
               
               
               Cow position:chrX:28134058-28134464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 50

               
               
               Conread position:16-434
               
               
               Cow position:chrX:34532240-34532646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 78

               
               
               Conread position:16-434
               
               
               Cow position:chrX:40557967-40557553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 139

               
               
               Conread position:16-439
               
               
               Cow position:chrX:3154540-3154111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 210

               
               
               Conread position:16-440
               
               
               Cow position:chrX:7277637-7278043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 47

               
               
               Conread position:16-440
               
               
               Cow position:chrX:26492711-26493138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):100, 328

               
               
               Conread position:16-441
               
               
               Cow position:chrX:9161297-9161708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 151

               
               
               Conread position:16-441
               
               
               Cow position:chrX:34401707-34402129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 15

               
               
               Conread position:16-443
               
               
               Cow position:chrX:10412277-10411849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):154, 93

               
               
               Conread position:16-443
               
               
               Cow position:chrX:42171587-42171162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 45

               
               
               Conread position:16-447
               
               
               Cow position:chrX:15545606-15546021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 93

               
               
               Conread position:16-447
               
               
               Cow position:chrX:38094816-38094381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 124

               
               
               Conread position:16-448
               
               
               Cow position:chrX:5017697-5017282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 57

               
               
               Conread position:16-448
               
               
               Cow position:chrX:25419451-25419014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 50

               
               
               Conread position:16-448
               
               
               Cow position:chrX:33466326-33466764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 78

               
               
               Conread position:16-448
               
               
               Cow position:chrX:34502632-34503060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):158, 45

               
               
               Conread position:16-448
               
               
               Cow position:chrX:34565009-34565423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):293, 37

               
               
               Conread position:16-448
               
               
               Cow position:chrX:35288369-35288795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 31

               
               
               Conread position:16-448
               
               
               Cow position:chrX:41790731-41790289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:297
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):158, 78

               
               
               Conread position:16-448
               
               
               Cow position:chrX:45113345-45113761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 38

               
               
               Conread position:16-449
               
               
               Cow position:chrX:151610-152041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 133

               
               
               Conread position:16-449
               
               
               Cow position:chrX:4044149-4043726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 181

               
               
               Conread position:16-449
               
               
               Cow position:chrX:7178621-7179035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:295
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):91, 47

               
               
               Conread position:16-449
               
               
               Cow position:chrX:10831803-10831347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 223

               
               
               Conread position:16-449
               
               
               Cow position:chrX:11655788-11656222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 218

               
               
               Conread position:16-449
               
               
               Cow position:chrX:11718071-11717642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):285, 97

               
               
               Conread position:16-449
               
               
               Cow position:chrX:14599242-14599673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 14

               
               
               Conread position:16-449
               
               
               Cow position:chrX:20340182-20339753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 198

               
               
               Conread position:16-449
               
               
               Cow position:chrX:20887935-20887499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 132

               
               
               Conread position:16-449
               
               
               Cow position:chrX:27442843-27442398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 45

               
               
               Conread position:16-449
               
               
               Cow position:chrX:27705302-27705727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):198, 93

               
               
               Conread position:16-449
               
               
               Cow position:chrX:31250100-31250529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 95

               
               
               Conread position:16-449
               
               
               Cow position:chrX:31489221-31489661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 273

               
               
               Conread position:16-449
               
               
               Cow position:chrX:31729167-31729583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:294
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):106, 97

               
               
               Conread position:16-449
               
               
               Cow position:chrX:38218427-38218857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):158, 38

               
               
               Conread position:16-449
               
               
               Cow position:chrX:41238654-41238214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):204, 94

               
               
               Conread position:16-449
               
               
               Cow position:chrX:42247467-42247041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 38

               
               
               Conread position:16-450
               
               
               Cow position:chrX:37489427-37489860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 170

               
               
               Conread position:16-450
               
               
               Cow position:chrX:45967871-45968290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:282
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):89, 157

               
               
               Conread position:16-451
               
               
               Cow position:chrX:7351011-7351440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 45

               
               
               Conread position:16-451
               
               
               Cow position:chrX:15147475-15147053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 22

               
               
               Conread position:16-461
               
               
               Cow position:chrX:32743247-32743685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 171

               
               
               Conread position:16-465
               
               
               Cow position:chrX:12290446-12290877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:304
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):93, 14

               
               
               Conread position:16-493
               
               
               Cow position:chrX:630587-630123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:488
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):152, 25

               
               
               Conread position:16-496
               
               
               Cow position:chrX:2300640-2301113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:489
               
               
               Alignm identity:353
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 157

               
               
               Conread position:16-503
               
               
               Cow position:chrX:28929570-28930030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:491
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 37

               
               
               Conread position:16-504
               
               
               Cow position:chrX:1616342-1615842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:369
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 213

               
               
               Conread position:16-506
               
               
               Cow position:chrX:15007442-15006941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 149

               
               
               Conread position:16-506
               
               
               Cow position:chrX:20376679-20377161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:497
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):99, 44

               
               
               Conread position:16-508
               
               
               Cow position:chrX:917660-917179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:504
               
               
               Alignm identity:369
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 5

               
               
               Conread position:16-508
               
               
               Cow position:chrX:5638459-5637959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:354
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 35

               
               
               Conread position:16-508
               
               
               Cow position:chrX:7645967-7646456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:504
               
               
               Alignm identity:371
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 157

               
               
               Conread position:16-508
               
               
               Cow position:chrX:17964806-17964326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:355
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 48

               
               
               Conread position:16-508
               
               
               Cow position:chrX:31260922-31260405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:522
               
               
               Alignm identity:397
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 216

               
               
               Conread position:16-508
               
               
               Cow position:chrX:31436189-31436689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:514
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 157

               
               
               Conread position:16-508
               
               
               Cow position:chrX:32309810-32310302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:371
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 219

               
               
               Conread position:16-508
               
               
               Cow position:chrX:36010183-36009716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:496
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 94

               
               
               Conread position:16-508
               
               
               Cow position:chrX:41122781-41123265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:501
               
               
               Alignm identity:351
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 146

               
               
               Conread position:16-508
               
               
               Cow position:chrX:41733478-41733003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:359
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 73

               
               
               Conread position:16-508
               
               
               Cow position:chrX:42994323-42994816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 140

               
               
               Conread position:17-373
               
               
               Cow position:chrX:20321057-20320700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:230
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):50, 37

               
               
               Conread position:17-373
               
               
               Cow position:chrX:21686330-21686682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:229
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):99, 37

               
               
               Conread position:17-432
               
               
               Cow position:chrX:9252464-9252039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:297
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):92, 45

               
               
               Conread position:17-449
               
               
               Cow position:chrX:161138-161552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):174, 92

               
               
               Conread position:17-449
               
               
               Cow position:chrX:27446401-27446827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 37

               
               
               Conread position:17-449
               
               
               Cow position:chrX:29289286-29289719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 227

               
               
               Conread position:17-491
               
               
               Cow position:chrX:20801488-20801946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 49

               
               
               Conread position:17-505
               
               
               Cow position:chrX:14974018-14973540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:502
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 28

               
               
               Conread position:17-505
               
               
               Cow position:chrX:27288032-27287542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:327
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):44, 73

               
               
               Conread position:17-506
               
               
               Cow position:chrX:25337887-25338382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:502
               
               
               Alignm identity:370
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 211

               
               
               Conread position:17-508
               
               
               Cow position:chrX:13912789-13913295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:522
               
               
               Alignm identity:363
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 166

               
               
               Conread position:17-508
               
               
               Cow position:chrX:30543572-30543088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:499
               
               
               Alignm identity:354
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 77

               
               
               Conread position:18-284
               
               
               Cow position:chrX:23986956-23987227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:175
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):99, 17

               
               
               Conread position:18-397
               
               
               Cow position:chrX:14598556-14598937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:241
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):99, 274

               
               
               Conread position:18-399
               
               
               Cow position:chrX:21063997-21064374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 138

               
               
               Conread position:18-423
               
               
               Cow position:chrX:11314067-11313670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):124, 90

               
               
               Conread position:18-432
               
               
               Cow position:chrX:27516244-27516642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 47

               
               
               Conread position:18-434
               
               
               Cow position:chrX:7571617-7572032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 156

               
               
               Conread position:18-434
               
               
               Cow position:chrX:24288202-24287807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:284
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):181, 49

               
               
               Conread position:18-449
               
               
               Cow position:chrX:34441736-34441313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 36

               
               
               Conread position:18-449
               
               
               Cow position:chrX:43527214-43527649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 289

               
               
               Conread position:18-449
               
               
               Cow position:chrX:44054516-44054943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:294
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):84, 43

               
               
               Conread position:18-462
               
               
               Cow position:chrX:1978207-1978661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:311
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):59, 230

               
               
               Conread position:18-469
               
               
               Cow position:chrX:2786835-2786396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 73

               
               
               Conread position:18-508
               
               
               Cow position:chrX:15329364-15329842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:494
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 85

               
               
               Conread position:19-449
               
               
               Cow position:chrX:44192730-44192303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:292
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):90, 38

               
               
               Conread position:19-470
               
               
               Cow position:chrX:28787079-28787508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):321, 46

               
               
               Conread position:19-508
               
               
               Cow position:chrX:33803304-33802808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 50

               
               
               Conread position:20-432
               
               
               Cow position:chrX:46532807-46532372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 432

               
               
               Conread position:20-449
               
               
               Cow position:chrX:8796963-8797390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 40

               
               
               Conread position:21-306
               
               
               Cow position:chrX:45412938-45412658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):88, 33

               
               
               Conread position:21-405
               
               
               Cow position:chrX:46033004-46032630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:261
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):166, 87

               
               
               Conread position:21-448
               
               
               Cow position:chrX:31294826-31294432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:299
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):86, 57

               
               
               Conread position:22-412
               
               
               Cow position:chrX:1055673-1055277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):278, 153

               
               
               Conread position:23-391
               
               
               Cow position:chrX:158053-157690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:248
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):151, 71

               
               
               Conread position:24-397
               
               
               Cow position:chrX:2467597-2467972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 49

               
               
               Conread position:26-345
               
               
               Cow position:chrX:28097844-28098152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:226
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):85, 120

               
               
               Conread position:26-426
               
               
               Cow position:chrX:34554449-34554841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):199, 143

               
               
               Conread position:26-449
               
               
               Cow position:chrX:8730798-8731234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 307

               
               
               Conread position:27-449
               
               
               Cow position:chrX:33855521-33855079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:295
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):50, 202

               
               
               Conread position:27-504
               
               
               Cow position:chrX:16762492-16762984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:502
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 38

               
               
               Conread position:27-508
               
               
               Cow position:chrX:31443101-31442619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:495
               
               
               Alignm identity:352
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 223

               
               
               Conread position:30-370
               
               
               Cow position:chrX:12017998-12018353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:252
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):79, 135

               
               
               Conread position:30-449
               
               
               Cow position:chrX:33639688-33640116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 305

               
               
               Conread position:30-506
               
               
               Cow position:chrX:6675202-6674717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:494
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 70

               
               
               Conread position:30-507
               
               
               Cow position:chrX:8925429-8925899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 24

               
               
               Conread position:32-359
               
               
               Cow position:chrX:47191670-47191357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:225
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):82, 36

               
               
               Conread position:33-294
               
               
               Cow position:chrX:45693832-45694090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:183
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):80, 159

               
               
               Conread position:34-325
               
               
               Cow position:chrX:40183623-40183322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:34-350
               
               
               Cow position:chrX:40647705-40648027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 196

               
               
               Conread position:34-462
               
               
               Cow position:chrX:7496972-7497391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 64

               
               
               Conread position:36-343
               
               
               Cow position:chrX:10095755-10096065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:204
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):81, 199

               
               
               Conread position:36-448
               
               
               Cow position:chrX:27509292-27508886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 189

               
               
               Conread position:37-425
               
               
               Cow position:chrX:45404104-45403708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:264
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):78, 270

               
               
               Conread position:37-505
               
               
               Cow position:chrX:17541694-17542158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:366
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 158

               
               
               Conread position:46-432
               
               
               Cow position:chrX:19689957-19690338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 184

               
               
               Conread position:48-507
               
               
               Cow position:chrX:20151591-20152067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 123

               
               
               Conread position:48-508
               
               
               Cow position:chrX:25713542-25713995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):126, 31

               
               
               Conread position:49-297
               
               
               Cow position:chrX:32020380-32020129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:183
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):60, 246

               
               
               Conread position:50-243
               
               
               Cow position:chrX:46382033-46381839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:134
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):67, 140

               
               
               Conread position:52-489
               
               
               Cow position:chrX:27176575-27176133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 20

               
               
               Conread position:54-434
               
               
               Cow position:chrX:41673850-41674231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 6

               
               
               Conread position:54-449
               
               
               Cow position:chrX:28878415-28878033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:275
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):51, 104

               
               
               Conread position:54-471
               
               
               Cow position:chrX:24366082-24365660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:284
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):124, 33

               
               
               Conread position:54-508
               
               
               Cow position:chrX:11073444-11072999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 151

               
               
               Conread position:55-508
               
               
               Cow position:chrX:23497915-23497477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):282, 135

               
               
               Conread position:60-440
               
               
               Cow position:chrX:9041475-9041112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:265
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):51, 15

               
               
               Conread position:60-442
               
               
               Cow position:chrX:27432166-27431784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 166

               
               
               Conread position:64-323
               
               
               Cow position:chrX:35284374-35284638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):34, 105

               
               
               Conread position:64-419
               
               
               Cow position:chrX:13323243-13322876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:256
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):31, 127

               
               
               Conread position:65-337
               
               
               Cow position:chrX:2648592-2648323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:189
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):46, 101

               
               
               Conread position:65-408
               
               
               Cow position:chrX:16541915-16541557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:243
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):109, 33

               
               
               Conread position:65-508
               
               
               Cow position:chrX:10302094-10302537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 163

               
               
               Conread position:65-508
               
               
               Cow position:chrX:41083683-41084116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 72

               
               
               Conread position:66-301
               
               
               Cow position:chrX:21663068-21663300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):43, 54

               
               
               Conread position:66-308
               
               
               Cow position:chrX:38840647-38840891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:177
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):43, 82

               
               
               Conread position:66-363
               
               
               Cow position:chrX:30862061-30862370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:206
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):43, 248

               
               
               Conread position:66-472
               
               
               Cow position:chrX:24259819-24259418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):279, 42

               
               
               Conread position:66-504
               
               
               Cow position:chrX:29761923-29761488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 38

               
               
               Conread position:66-508
               
               
               Cow position:chrX:40788962-40789403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 162

               
               
               Conread position:67-426
               
               
               Cow position:chrX:42492750-42492405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):158, 27

               
               
               Conread position:67-449
               
               
               Cow position:chrX:17888646-17888282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 80

               
               
               Conread position:67-469
               
               
               Cow position:chrX:2383249-2383624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 155

               
               
               Conread position:67-506
               
               
               Cow position:chrX:17662837-17662403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 159

               
               
               Conread position:67-506
               
               
               Cow position:chrX:41560474-41560078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:302
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:70-302
               
               
               Cow position:chrX:42282199-42282424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:160
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:70-307
               
               
               Cow position:chrX:19019347-19019105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):35, 16

               
               
               Conread position:70-338
               
               
               Cow position:chrX:44053021-44053288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 152

               
               
               Conread position:70-369
               
               
               Cow position:chrX:41167201-41166902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 225

               
               
               Conread position:70-378
               
               
               Cow position:chrX:26876118-26875812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 149

               
               
               Conread position:70-393
               
               
               Cow position:chrX:9360646-9360971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:216
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):39, 191

               
               
               Conread position:70-413
               
               
               Cow position:chrX:27680166-27680503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):278, 102

               
               
               Conread position:70-434
               
               
               Cow position:chrX:43567702-43568045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:244
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):39, 84

               
               
               Conread position:70-447
               
               
               Cow position:chrX:9416930-9416545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 151

               
               
               Conread position:70-447
               
               
               Cow position:chrX:9635418-9635052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 151

               
               
               Conread position:70-449
               
               
               Cow position:chrX:45598841-45598464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:259
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):39, 147

               
               
               Conread position:70-471
               
               
               Cow position:chrX:6690485-6690099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 101

               
               
               Conread position:70-492
               
               
               Cow position:chrX:17631039-17630618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 151

               
               
               Conread position:71-268
               
               
               Cow position:chrX:2206780-2206588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):43, 120

               
               
               Conread position:71-286
               
               
               Cow position:chrX:25411604-25411821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):80, 37

               
               
               Conread position:71-304
               
               
               Cow position:chrX:8682166-8681929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):29, 73

               
               
               Conread position:71-408
               
               
               Cow position:chrX:38935045-38935379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:237
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):38, 166

               
               
               Conread position:71-419
               
               
               Cow position:chrX:42499265-42498938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:240
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):38, 101

               
               
               Conread position:71-420
               
               
               Cow position:chrX:23514254-23513905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 53

               
               
               Conread position:71-421
               
               
               Cow position:chrX:21004448-21004797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:247
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):102, 21

               
               
               Conread position:71-434
               
               
               Cow position:chrX:1514640-1514293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 106

               
               
               Conread position:71-434
               
               
               Cow position:chrX:11455288-11454923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):146, 98

               
               
               Conread position:71-443
               
               
               Cow position:chrX:619244-618874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 154

               
               
               Conread position:71-448
               
               
               Cow position:chrX:16416272-16416639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:262
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):103, 155

               
               
               Conread position:71-449
               
               
               Cow position:chrX:34543551-34543925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 71

               
               
               Conread position:71-449
               
               
               Cow position:chrX:38549212-38549588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 154

               
               
               Conread position:71-451
               
               
               Cow position:chrX:33493539-33493919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 152

               
               
               Conread position:71-451
               
               
               Cow position:chrX:44961511-44961894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 128

               
               
               Conread position:71-485
               
               
               Cow position:chrX:24132387-24131976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:281
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):45, 129

               
               
               Conread position:71-499
               
               
               Cow position:chrX:31340467-31340901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 157

               
               
               Conread position:71-505
               
               
               Cow position:chrX:6203319-6203738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 154

               
               
               Conread position:71-508
               
               
               Cow position:chrX:6563276-6563717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 63

               
               
               Conread position:71-508
               
               
               Cow position:chrX:7425228-7425665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 156

               
               
               Conread position:71-508
               
               
               Cow position:chrX:15305524-15305096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 63

               
               
               Conread position:71-508
               
               
               Cow position:chrX:39558584-39558163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 125

               
               
               Conread position:71-508
               
               
               Cow position:chrX:39938753-39938318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:302
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):105, 27

               
               
               Conread position:71-508
               
               
               Cow position:chrX:40692974-40692552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 73

               
               
               Conread position:71-508
               
               
               Cow position:chrX:42011044-42011481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 154

               
               
               Conread position:72-449
               
               
               Cow position:chrX:32623348-32623711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:260
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):39, 13

               
               
               Conread position:72-506
               
               
               Cow position:chrX:11856194-11856620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 48

               
               
               Conread position:73-434
               
               
               Cow position:chrX:47054761-47054399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:256
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):31, 9

               
               
               Conread position:73-449
               
               
               Cow position:chrX:27394248-27393885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 115

               
               
               Conread position:73-449
               
               
               Cow position:chrX:30963106-30962735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:256
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):30, 98

               
               
               Conread position:73-451
               
               
               Cow position:chrX:13382090-13382468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 240

               
               
               Conread position:73-459
               
               
               Cow position:chrX:4865015-4865380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 103

               
               
               Conread position:73-502
               
               
               Cow position:chrX:37119365-37119789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 82

               
               
               Conread position:73-508
               
               
               Cow position:chrX:19930421-19930843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 149

               
               
               Conread position:73-508
               
               
               Cow position:chrX:30421173-30420747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 159

               
               
               Conread position:74-400
               
               
               Cow position:chrX:12405602-12405290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:230
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):147, 37

               
               
               Conread position:74-447
               
               
               Cow position:chrX:3130348-3130711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:248
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):37, 145

               
               
               Conread position:75-508
               
               
               Cow position:chrX:29120828-29121241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):273, 14

               
               
               Conread position:76-302
               
               
               Cow position:chrX:37048812-37048581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:164
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):35, 150

               
               
               Conread position:77-302
               
               
               Cow position:chrX:10373077-10373310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:175
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):23, 158

               
               
               Conread position:77-364
               
               
               Cow position:chrX:16790067-16789803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):32, 93

               
               
               Conread position:77-396
               
               
               Cow position:chrX:15814867-15815171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:223
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):32, 77

               
               
               Conread position:77-432
               
               
               Cow position:chrX:22821817-22822169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:246
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):24, 149

               
               
               Conread position:77-432
               
               
               Cow position:chrX:37910223-37910569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 13

               
               
               Conread position:77-447
               
               
               Cow position:chrX:38642030-38642388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:255
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):97, 33

               
               
               Conread position:77-449
               
               
               Cow position:chrX:5900227-5900603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:263
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):22, 36

               
               
               Conread position:77-449
               
               
               Cow position:chrX:6278736-6278357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 229

               
               
               Conread position:77-449
               
               
               Cow position:chrX:9201317-9201689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 147

               
               
               Conread position:77-451
               
               
               Cow position:chrX:35542661-35543030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 148

               
               
               Conread position:77-460
               
               
               Cow position:chrX:36975719-36976103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:262
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):25, 198

               
               
               Conread position:77-508
               
               
               Cow position:chrX:18456162-18456600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 64

               
               
               Conread position:77-508
               
               
               Cow position:chrX:22624251-22624680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 57

               
               
               Conread position:78-384
               
               
               Cow position:chrX:11589821-11589513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:225
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):29, 90

               
               
               Conread position:78-508
               
               
               Cow position:chrX:21664952-21664525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):104, 57

               
               
               Conread position:79-390
               
               
               Cow position:chrX:14900949-14900652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 141

               
               
               Conread position:79-482
               
               
               Cow position:chrX:32431399-32431798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 50

               
               
               Conread position:80-423
               
               
               Cow position:chrX:29032190-29032525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:239
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):163, 33

               
               
               Conread position:81-434
               
               
               Cow position:chrX:44396789-44397135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:252
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):30, 99

               
               
               Conread position:83-451
               
               
               Cow position:chrX:18287279-18286934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:249
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):28, 40

               
               
               Conread position:83-491
               
               
               Cow position:chrX:17042466-17042865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 141

               
               
               Conread position:84-434
               
               
               Cow position:chrX:6265809-6265473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:239
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):25, 85

               
               
               Conread position:87-487
               
               
               Cow position:chrX:39126118-39126505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):262, 80

               
               
               Conread position:89-370
               
               
               Cow position:chrX:36961418-36961702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:214
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):9, 215

               
               
               Conread position:89-434
               
               
               Cow position:chrX:23091663-23091997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 132

               
               
               Conread position:89-443
               
               
               Cow position:chrX:48236593-48236952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:253
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):20, 219

               
               
               Conread position:89-447
               
               
               Cow position:chrX:11633460-11633821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 221

               
               
               Conread position:89-449
               
               
               Cow position:chrX:36283127-36283480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:255
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):20, 213

               
               
               Conread position:89-508
               
               
               Cow position:chrX:1503121-1503527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 132

               
               
               Conread position:89-508
               
               
               Cow position:chrX:46073040-46072610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 102

               
               
               Conread position:91-440
               
               
               Cow position:chrX:28013656-28013310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:230
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):26, 91

               
               
               Conread position:91-508
               
               
               Cow position:chrX:40567383-40567825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:305
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):18, 167

               
               
               Conread position:92-357
               
               
               Cow position:chrX:20752044-20752303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):22, 79

               
               
               Conread position:95-434
               
               
               Cow position:chrX:8869619-8869276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:242
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):52, 137

               
               
               Conread position:95-449
               
               
               Cow position:chrX:43730427-43730083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 95

               
               
               Conread position:95-508
               
               
               Cow position:chrX:11614486-11614895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:278
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):20, 202

               
               
               Conread position:96-347
               
               
               Cow position:chrX:28836108-28835865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:189
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:96-397
               
               
               Cow position:chrX:841947-842245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):13, 86

               
               
               Conread position:96-506
               
               
               Cow position:chrX:8917642-8918031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:286
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):13, 96

               
               
               Conread position:96-508
               
               
               Cow position:chrX:29542430-29542008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:288
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):13, 126

               
               
               Conread position:97-332
               
               
               Cow position:chrX:29509653-29509417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:173
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):8, 197

               
               
               Conread position:98-309
               
               
               Cow position:chrX:46315586-46315374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:159
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):76, 10

               
               
               Conread position:98-434
               
               
               Cow position:chrX:45845886-45846227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:225
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):11, 127

               
               
               Conread position:98-449
               
               
               Cow position:chrX:12980039-12979693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:245
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):13, 126

               
               
               Conread position:98-449
               
               
               Cow position:chrX:29602040-29601687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 92

               
               
               Conread position:98-449
               
               
               Cow position:chrX:34411631-34411987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 115

               
               
               Conread position:98-508
               
               
               Cow position:chrX:10959607-10959196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 15

               
               
               Conread position:99-434
               
               
               Cow position:chrX:32420011-32420337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:233
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):8, 183

               
               
               Conread position:99-449
               
               
               Cow position:chrX:45110447-45110797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:238
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):15, 110

               
               
               Conread position:100-508
               
               
               Cow position:chrX:4826035-4825628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:285
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):9, 116

               
               
               Conread position:105-448
               
               
               Cow position:chrX:37781318-37780969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 121

               
               
               Conread position:106-496
               
               
               Cow position:chrX:25571193-25570796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:270
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):244, 105

               
               
               Conread position:110-290
               
               
               Cow position:chrX:4091452-4091632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):41, 49

               
               
               Conread position:110-343
               
               
               Cow position:chrX:17908479-17908255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:178
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):54, 79

               
               
               Conread position:110-397
               
               
               Cow position:chrX:43973363-43973633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:194
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):235, 70

               
               
               Conread position:110-449
               
               
               Cow position:chrX:29545075-29544736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:237
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):41, 54

               
               
               Conread position:110-449
               
               
               Cow position:chrX:46587622-46587963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 87

               
               
               Conread position:110-504
               
               
               Cow position:chrX:43780048-43779649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:274
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):37, 190

               
               
               Conread position:110-508
               
               
               Cow position:chrX:1499474-1499874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 58

               
               
               Conread position:112-322
               
               
               Cow position:chrX:45874805-45875010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):178, 0

               
               
               Conread position:112-449
               
               
               Cow position:chrX:31311832-31312170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 54

               
               
               Conread position:113-507
               
               
               Cow position:chrX:33000711-33001117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:277
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):74, 89

               
               
               Conread position:115-426
               
               
               Cow position:chrX:44657155-44656839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):80, 72

               
               
               Conread position:115-432
               
               
               Cow position:chrX:23785463-23785770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:219
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):59, 136

               
               
               Conread position:115-449
               
               
               Cow position:chrX:3489075-3488750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:216
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):233, 37

               
               
               Conread position:115-449
               
               
               Cow position:chrX:4515477-4515832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:242
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):32, 206

               
               
               Conread position:116-279
               
               
               Cow position:chrX:24149450-24149614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):51, 105

               
               
               Conread position:117-397
               
               
               Cow position:chrX:40809498-40809781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):112, 178

               
               
               Conread position:117-447
               
               
               Cow position:chrX:42235722-42235385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 114

               
               
               Conread position:119-372
               
               
               Cow position:chrX:48035241-48035488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):55, 105

               
               
               Conread position:123-307
               
               
               Cow position:chrX:14003828-14003641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:135
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):9, 101

               
               
               Conread position:123-449
               
               
               Cow position:chrX:32820847-32821169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 11

               
               
               Conread position:124-434
               
               
               Cow position:chrX:7336645-7336967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:198
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):23, 161

               
               
               Conread position:126-302
               
               
               Cow position:chrX:30005089-30005262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:127-505
               
               
               Cow position:chrX:16514443-16514078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 95

               
               
               Conread position:128-447
               
               
               Cow position:chrX:29680438-29680122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 31

               
               
               Conread position:131-449
               
               
               Cow position:chrX:27227951-27228268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:228
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):93, 23

               
               
               Conread position:132-370
               
               
               Cow position:chrX:46146734-46146500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):122, 63

               
               
               Conread position:132-507
               
               
               Cow position:chrX:35885903-35885513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:264
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):97, 153

               
               
               Conread position:133-447
               
               
               Cow position:chrX:46433310-46433630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):41, 175

               
               
               Conread position:133-449
               
               
               Cow position:chrX:31252245-31252548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):14, 30

               
               
               Conread position:133-455
               
               
               Cow position:chrX:6407376-6407690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:228
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):51, 88

               
               
               Conread position:133-507
               
               
               Cow position:chrX:38999671-39000047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:263
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):41, 15

               
               
               Conread position:134-440
               
               
               Cow position:chrX:4279286-4278986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:206
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):50, 104

               
               
               Conread position:134-449
               
               
               Cow position:chrX:37955666-37955988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:227
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):159, 19

               
               
               Conread position:134-451
               
               
               Cow position:chrX:34792482-34792170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:220
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):40, 63

               
               
               Conread position:144-452
               
               
               Cow position:chrX:41068566-41068869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:217
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):201, 20

               
               
               Conread position:145-508
               
               
               Cow position:chrX:4398970-4399338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:259
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):200, 16

               
               
               Conread position:146-448
               
               
               Cow position:chrX:8917238-8917532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:196
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):202, 15

               
               
               Conread position:147-507
               
               
               Cow position:chrX:23666964-23667315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:244
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):96, 156

               
               
               Conread position:148-300
               
               
               Cow position:chrX:33590570-33590724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):71, 95

               
               
               Conread position:155-341
               
               
               Cow position:chrX:34993989-34994162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:156-451
               
               
               Cow position:chrX:5680084-5679788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):14, 33

               
               
               Conread position:156-508
               
               
               Cow position:chrX:6041359-6041014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:242
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):87, 15

               
               
               Conread position:157-440
               
               
               Cow position:chrX:14955917-14955637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:191
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):17, 127

               
               
               Conread position:157-448
               
               
               Cow position:chrX:9365822-9365536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:204
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):191, 21

               
               
               Conread position:157-508
               
               
               Cow position:chrX:39415518-39415170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 66

               
               
               Conread position:160-394
               
               
               Cow position:chrX:29723596-29723825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):188, 138

               
               
               Conread position:161-440
               
               
               Cow position:chrX:11085201-11084932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):187, 119

               
               
               Conread position:164-508
               
               
               Cow position:chrX:19878909-19879236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:241
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:166-449
               
               
               Cow position:chrX:22387382-22387109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:206
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):231, 130

               
               
               Conread position:166-508
               
               
               Cow position:chrX:47178017-47178342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:226
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):263, 66

               
               
               Conread position:167-432
               
               
               Cow position:chrX:45976782-45977050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:181
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):49, 147

               
               
               Conread position:169-434
               
               
               Cow position:chrX:19273859-19273581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:193
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):26, 51

               
               
               Conread position:172-346
               
               
               Cow position:chrX:36723224-36723053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:124
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):124, 0

               
               
               Conread position:172-388
               
               
               Cow position:chrX:27450132-27449919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):70, 48

               
               
               Conread position:172-455
               
               
               Cow position:chrX:41027024-41027306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):176, 47

               
               
               Conread position:172-457
               
               
               Cow position:chrX:34315397-34315669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):173, 14

               
               
               Conread position:172-508
               
               
               Cow position:chrX:41870938-41871277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:235
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):14, 49

               
               
               Conread position:173-404
               
               
               Cow position:chrX:5919364-5919588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:164
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):176, 46

               
               
               Conread position:173-427
               
               
               Cow position:chrX:21566270-21566526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 132

               
               
               Conread position:173-447
               
               
               Cow position:chrX:40685463-40685189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):135, 46

               
               
               Conread position:174-508
               
               
               Cow position:chrX:20584192-20584532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 46

               
               
               Conread position:175-419
               
               
               Cow position:chrX:45875261-45875503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):47, 116

               
               
               Conread position:176-447
               
               
               Cow position:chrX:38728608-38728873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:196
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):51, 65

               
               
               Conread position:176-449
               
               
               Cow position:chrX:7710672-7710398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:197
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):48, 119

               
               
               Conread position:181-400
               
               
               Cow position:chrX:27946183-27945963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):48, 120

               
               
               Conread position:181-505
               
               
               Cow position:chrX:18142579-18142263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:227
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):61, 40

               
               
               Conread position:182-379
               
               
               Cow position:chrX:20790798-20790983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:147
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:182-469
               
               
               Cow position:chrX:6656263-6656543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:199
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):158, 38

               
               
               Conread position:183-447
               
               
               Cow position:chrX:38654552-38654302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):162, 37

               
               
               Conread position:184-372
               
               
               Cow position:chrX:35848439-35848627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:137
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):8, 66

               
               
               Conread position:187-449
               
               
               Cow position:chrX:26881686-26881423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:183
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):162, 32

               
               
               Conread position:191-508
               
               
               Cow position:chrX:23940139-23939854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):137, 29

               
               
               Conread position:192-449
               
               
               Cow position:chrX:24331665-24331917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):25, 36

               
               
               Conread position:193-451
               
               
               Cow position:chrX:34222598-34222857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):33, 51

               
               
               Conread position:196-397
               
               
               Cow position:chrX:17949599-17949405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):33, 97

               
               
               Conread position:196-451
               
               
               Cow position:chrX:29194125-29194373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):200, 23

               
               
               Conread position:197-393
               
               
               Cow position:chrX:47657276-47657470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:142
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):151, 51

               
               
               Conread position:198-384
               
               
               Cow position:chrX:13136337-13136157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:134
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):150, 14

               
               
               Conread position:201-440
               
               
               Cow position:chrX:31515065-31515306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:183
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):88, 19

               
               
               Conread position:203-446
               
               
               Cow position:chrX:16348672-16348434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:177
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):14, 165

               
               
               Conread position:204-449
               
               
               Cow position:chrX:21327802-21328054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:177
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:205-412
               
               
               Cow position:chrX:25441091-25440894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):144, 15

               
               
               Conread position:209-446
               
               
               Cow position:chrX:19162437-19162201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:162
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):139, 87

               
               
               Conread position:209-447
               
               
               Cow position:chrX:29549644-29549412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:169
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):139, 110

               
               
               Conread position:209-449
               
               
               Cow position:chrX:12095870-12095631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):136, 80

               
               
               Conread position:209-449
               
               
               Cow position:chrX:20168461-20168698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):139, 87

               
               
               Conread position:209-449
               
               
               Cow position:chrX:37129172-37129410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):139, 40

               
               
               Conread position:209-508
               
               
               Cow position:chrX:19678363-19678080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:209
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):34, 11

               
               
               Conread position:215-397
               
               
               Cow position:chrX:1572228-1572051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):133, 81

               
               
               Conread position:215-433
               
               
               Cow position:chrX:7344994-7345208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):13, 99

               
               
               Conread position:220-451
               
               
               Cow position:chrX:36514980-36514750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):129, 81

               
               
               Conread position:223-426
               
               
               Cow position:chrX:36866088-36866290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):125, 68

               
               
               Conread position:224-449
               
               
               Cow position:chrX:40680529-40680755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:159
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):124, 75

               
               
               Conread position:224-469
               
               
               Cow position:chrX:27261106-27261353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:174
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):124, 75

               
               
               Conread position:224-508
               
               
               Cow position:chrX:20882019-20881741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):124, 46

               
               
               Conread position:225-427
               
               
               Cow position:chrX:13121851-13122057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):61, 7

               
               
               Conread position:225-448
               
               
               Cow position:chrX:41271079-41270846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:165
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:225-449
               
               
               Cow position:chrX:4109110-4109325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):123, 28

               
               
               Conread position:225-449
               
               
               Cow position:chrX:17966258-17966482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:160
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):31, 75

               
               
               Conread position:225-506
               
               
               Cow position:chrX:26619189-26618920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):26, 67

               
               
               Conread position:226-443
               
               
               Cow position:chrX:22115397-22115182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:155
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):11, 68

               
               
               Conread position:227-443
               
               
               Cow position:chrX:39220001-39220214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):113, 34

               
               
               Conread position:227-447
               
               
               Cow position:chrX:169627-169407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):7, 70

               
               
               Conread position:227-449
               
               
               Cow position:chrX:23113199-23113426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:166
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):82, 30

               
               
               Conread position:227-449
               
               
               Cow position:chrX:23562556-23562773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):121, 41

               
               
               Conread position:227-452
               
               
               Cow position:chrX:42855376-42855602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:164
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):88, 43

               
               
               Conread position:227-473
               
               
               Cow position:chrX:22326039-22326284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:166
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):15, 28

               
               
               Conread position:229-485
               
               
               Cow position:chrX:39339185-39338927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:176
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):16, 79

               
               
               Conread position:232-442
               
               
               Cow position:chrX:23561786-23561992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):9, 63

               
               
               Conread position:232-447
               
               
               Cow position:chrX:19097296-19097080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):116, 64

               
               
               Conread position:243-448
               
               
               Cow position:chrX:15820534-15820734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):105, 56

               
               
               Conread position:243-449
               
               
               Cow position:chrX:25036924-25037128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):105, 53

               
               
               Conread position:243-451
               
               
               Cow position:chrX:126706-126910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):68, 52

               
               
               Conread position:248-449
               
               
               Cow position:chrX:10516192-10516394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:144
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):100, 54

               
               
               Conread position:249-451
               
               
               Cow position:chrX:32978134-32977943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):96, 47

               
               
               Conread position:250-447
               
               
               Cow position:chrX:22915092-22914903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):98, 24

               
               
               Conread position:250-448
               
               
               Cow position:chrX:2003932-2003736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):95, 52

               
               
               Conread position:250-506
               
               
               Cow position:chrX:27771631-27771380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):68, 57

               
               
               Conread position:250-508
               
               
               Cow position:chrX:39352724-39352992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:195
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):58, 49

               
               
               Conread position:251-451
               
               
               Cow position:chrX:46429875-46429676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:145
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):98, 11

               
               
               Conread position:251-455
               
               
               Cow position:chrX:44339379-44339178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):97, 61

               
               
               Conread position:254-446
               
               
               Cow position:chrX:18964876-18964691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:145
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):94, 11

               
               
               Conread position:254-504
               
               
               Cow position:chrX:29408077-29407828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:192
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 67

               
               
               Conread position:254-505
               
               
               Cow position:chrX:43426240-43426487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 48

               
               
               Conread position:257-482
               
               
               Cow position:chrX:7806376-7806598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:180
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 13

               
               
               Conread position:258-434
               
               
               Cow position:chrX:22393034-22392858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):91, 48

               
               
               Conread position:258-447
               
               
               Cow position:chrX:19943285-19943097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):90, 44

               
               
               Conread position:258-504
               
               
               Cow position:chrX:15233315-15233072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:183
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):138, 38

               
               
               Conread position:258-508
               
               
               Cow position:chrX:34356015-34355776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:172
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):87, 43

               
               
               Conread position:258-508
               
               
               Cow position:chrX:46083924-46084172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):91, 32

               
               
               Conread position:261-449
               
               
               Cow position:chrX:40532087-40531902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:134
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):88, 10

               
               
               Conread position:261-450
               
               
               Cow position:chrX:4645957-4645771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:135
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):87, 41

               
               
               Conread position:261-470
               
               
               Cow position:chrX:9839181-9839385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:145
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):90, 61

               
               
               Conread position:267-451
               
               
               Cow position:chrX:29553246-29553428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:138
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):81, 14

               
               
               Conread position:268-448
               
               
               Cow position:chrX:42893879-42894066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:268-508
               
               
               Cow position:chrX:4289401-4289654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):82, 34

               
               
               Conread position:271-443
               
               
               Cow position:chrX:17956660-17956825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):125, 23

               
               
               Conread position:272-397
               
               
               Cow position:chrX:8097464-8097340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:99
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):79, 39

               
               
               Conread position:272-451
               
               
               Cow position:chrX:27413476-27413654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):77, 13

               
               
               Conread position:274-501
               
               
               Cow position:chrX:35759971-35759743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:180
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 32

               
               
               Conread position:275-450
               
               
               Cow position:chrX:10305379-10305209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):73, 32

               
               
               Conread position:281-449
               
               
               Cow position:chrX:20743577-20743745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):67, 21

               
               
               Conread position:285-449
               
               
               Cow position:chrX:25411886-25412046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):63, 17

               
               
               Conread position:289-448
               
               
               Cow position:chrX:32910085-32910239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):64, 24

               
               
               Conread position:289-449
               
               
               Cow position:chrX:42282559-42282717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):55, 22

               
               
               Conread position:290-508
               
               
               Cow position:chrX:11763022-11762791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:163
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:290-508
               
               
               Cow position:chrX:27276676-27276897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):59, 31

               
               
               Conread position:299-449
               
               
               Cow position:chrX:18046390-18046537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:117
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):49, 68

               
               
               Conread position:301-508
               
               
               Cow position:chrX:35278321-35278530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:157
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):47, 19

               
               
               Conread position:302-452
               
               
               Cow position:chrX:23188787-23188640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:115
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):46, 11

               
               
               Conread position:302-508
               
               
               Cow position:chrX:3806673-3806898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:303-448
               
               
               Cow position:chrX:35383041-35382897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:114
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):16, 23

               
               
               Conread position:304-448
               
               
               Cow position:chrX:29733600-29733452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:113
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:304-452
               
               
               Cow position:chrX:27075057-27074907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:112
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:305-508
               
               
               Cow position:chrX:24054666-24054881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:307-505
               
               
               Cow position:chrX:8780042-8780240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:138
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):38, 18

               
               
               Conread position:307-507
               
               
               Cow position:chrX:4466964-4467170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:307-508
               
               
               Cow position:chrX:38722118-38722317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:159
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):42, 146

               
               
               Conread position:308-499
               
               
               Cow position:chrX:46070174-46069974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:310-449
               
               
               Cow position:chrX:27668958-27668817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:105
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:313-508
               
               
               Cow position:chrX:31745003-31744795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):6, 0

               
               
               Conread position:320-446
               
               
               Cow position:chrX:37665701-37665826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:100
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):28, 117

               
               
               Conread position:326-499
               
               
               Cow position:chrX:12304577-12304751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:128
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):23, 100

               
               
               Conread position:327-508
               
               
               Cow position:chrX:46700830-46700650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):22, 38

               
               
               Conread position:334-508
               
               
               Cow position:chrX:39832438-39832612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):11, 62

               
               
               Conread position:340-506
               
               
               Cow position:chrX:28835732-28835561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:129
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):9, 155

               
               
               Conread position:346-508
               
               
               Cow position:chrX:6676863-6677026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:128
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:346-508
               
               
               Cow position:chrX:16291982-16291818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):138, 82

               
               
               Conread position:347-508
               
               
               Cow position:chrX:2551129-2551297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:348-508
               
               
               Cow position:chrX:1727934-1727771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:357-508
               
               
               Cow position:chrX:37140517-37140668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):40, 58