• Home
• Research
• Resources
• Publications
• About
• People
• Events
• Jobs
• News
• Contact

Cow genome map

           
Conread name:
           
rpliv0128_b16.y1
        

               
Conread position:
               
1-171
               

               
Cow position:
               
chr1:15463326-15463156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-187
               

               
Cow position:
               
chr1:3263464-3263276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
36, 115
               

               
Conread position:
               
1-239
               

               
Cow position:
               
chr1:71044975-71044743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
36, 55
               

               
Conread position:
               
1-252
               

               
Cow position:
               
chr1:12803560-12803312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
20, 99
               

               
Conread position:
               
1-252
               

               
Cow position:
               
chr1:68602155-68602410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 185
               

               
Conread position:
               
1-253
               

               
Cow position:
               
chr1:30440628-30440379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
190, 0
               

               
Conread position:
               
1-253
               

               
Cow position:
               
chr1:79633080-79633333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 57
               

               
Conread position:
               
1-256
               

               
Cow position:
               
chr1:5505413-5505154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 176
               

               
Conread position:
               
1-256
               

               
Cow position:
               
chr1:26811599-26811856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
36, 188
               

               
Conread position:
               
1-256
               

               
Cow position:
               
chr1:28811767-28812026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 190
               

               
Conread position:
               
1-256
               

               
Cow position:
               
chr1:56140882-56141137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
17, 173
               

               
Conread position:
               
1-256
               

               
Cow position:
               
chr1:73440441-73440182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 189
               

               
Conread position:
               
1-265
               

               
Cow position:
               
chr1:11854476-11854736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 8
               

               
Conread position:
               
2-170
               

               
Cow position:
               
chr1:6765629-6765793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
35, 96
               

               
Conread position:
               
2-183
               

               
Cow position:
               
chr1:32563061-32563244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
2-183
               

               
Cow position:
               
chr1:78291031-78290849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
2-183
               

               
Cow position:
               
chr1:99837877-99838060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
2-183
               

               
Cow position:
               
chr1:101008382-101008562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
33, 131
               

               
Conread position:
               
2-185
               

               
Cow position:
               
chr1:67290091-67289908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
35, 65
               

               
Conread position:
               
2-186
               

               
Cow position:
               
chr1:21507614-21507800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
2-187
               

               
Cow position:
               
chr1:19056347-19056160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
2-187
               

               
Cow position:
               
chr1:83060168-83060354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
35, 89
               

               
Conread position:
               
2-187
               

               
Cow position:
               
chr1:89767057-89767241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
36, 155
               

               
Conread position:
               
2-189
               

               
Cow position:
               
chr1:57660074-57659895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
35, 115
               

               
Conread position:
               
2-190
               

               
Cow position:
               
chr1:7415959-7415770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
2-205
               

               
Cow position:
               
chr1:74513669-74513870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
35, 188
               

               
Conread position:
               
2-208
               

               
Cow position:
               
chr1:82567886-82567686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
35, 119
               

               
Conread position:
               
2-210
               

               
Cow position:
               
chr1:13251071-13251277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
35, 184
               

               
Conread position:
               
2-210
               

               
Cow position:
               
chr1:19828510-19828711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
125, 35
               

               
Conread position:
               
2-210
               

               
Cow position:
               
chr1:21165243-21165037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
35, 188
               

               
Conread position:
               
2-210
               

               
Cow position:
               
chr1:26838429-26838223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 188
               

               
Conread position:
               
2-210
               

               
Cow position:
               
chr1:42740170-42739964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 184
               

               
Conread position:
               
2-210
               

               
Cow position:
               
chr1:83136418-83136210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
35, 190
               

               
Conread position:
               
2-210
               

               
Cow position:
               
chr1:92196449-92196245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
35, 7
               

               
Conread position:
               
2-239
               

               
Cow position:
               
chr1:2744571-2744343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
38, 92
               

               
Conread position:
               
2-239
               

               
Cow position:
               
chr1:81308835-81308594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
36, 188
               

               
Conread position:
               
2-247
               

               
Cow position:
               
chr1:18196069-18195821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
35, 184
               

               
Conread position:
               
2-248
               

               
Cow position:
               
chr1:82920668-82920915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
35, 115
               

               
Conread position:
               
2-250
               

               
Cow position:
               
chr1:82909361-82909609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
35, 59
               

               
Conread position:
               
2-251
               

               
Cow position:
               
chr1:2989957-2989704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 188
               

               
Conread position:
               
2-252
               

               
Cow position:
               
chr1:30079415-30079163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 191
               

               
Conread position:
               
2-252
               

               
Cow position:
               
chr1:69770292-69770039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 103
               

               
Conread position:
               
2-253
               

               
Cow position:
               
chr1:22012489-22012741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 46
               

               
Conread position:
               
2-253
               

               
Cow position:
               
chr1:26722190-26722443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
35, 59
               

               
Conread position:
               
2-253
               

               
Cow position:
               
chr1:31535326-31535071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 189
               

               
Conread position:
               
2-253
               

               
Cow position:
               
chr1:47454506-47454758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 184
               

               
Conread position:
               
2-253
               

               
Cow position:
               
chr1:57574113-57574367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
2-253
               

               
Cow position:
               
chr1:73443386-73443631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 93
               

               
Conread position:
               
2-253
               

               
Cow position:
               
chr1:77748217-77747962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 188
               

               
Conread position:
               
2-253
               

               
Cow position:
               
chr1:79453286-79453541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 189
               

               
Conread position:
               
2-253
               

               
Cow position:
               
chr1:89090063-89090318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
35, 189
               

               
Conread position:
               
2-253
               

               
Cow position:
               
chr1:93857996-93857741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr1:3382845-3383101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 183
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr1:4337239-4336979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
35, 16
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr1:6196806-6197060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 12
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr1:7162334-7162592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 207
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr1:7324545-7324287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 189
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr1:7406145-7405887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 189
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr1:7712246-7711998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
125, 22
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr1:8470688-8470946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr1:8517596-8517854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 188
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr1:8557159-8556902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 24
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr1:9595472-9595729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 166
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr1:10726097-10725840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 60
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr1:11199157-11199414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 114
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr1:11288913-11289173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 190
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr1:13438593-13438337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr1:15149169-15149427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
33, 216
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr1:16797629-16797880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
36, 24
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr1:16838791-16838533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr1:17033121-17033376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
35, 191
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr1:17187766-17188024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 189
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr1:18087903-18087645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 188
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr1:19157983-19158241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 189
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr1:19236023-19236281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 188
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr1:19775617-19775875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 188
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr1:20527634-20527376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 189
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr1:20832356-20832098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 189
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr1:20846539-20846797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 189
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr1:21090939-21090681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 189
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr1:21258128-21258383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 158
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr1:21377084-21377342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
35, 189
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr1:23861235-23861493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 189
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr1:24655304-24655048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 191
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr1:25053113-25053371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 184
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr1:25553277-25553023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
124, 187
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr1:26536712-26536970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 189
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr1:26588424-26588166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
35, 188
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr1:28521125-28520867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 189
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr1:28714513-28714255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
35, 189
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr1:28876571-28876313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr1:29429078-29428815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr1:30531550-30531804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 103
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr1:31341934-31342183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 111
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr1:31351295-31351550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
35, 114
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr1:31646150-31646408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 189
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr1:33854741-33854483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 188
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr1:34533715-34533457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 189
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr1:35598337-35598594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 166
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr1:36645981-36646235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 61
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr1:38712186-38711929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 188
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr1:39235029-39235287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 188
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr1:40058567-40058321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
33, 67
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr1:40681257-40681515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr1:46612823-46613080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 188
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr1:47078706-47078964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 189
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr1:48250191-48249931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 191
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr1:48345644-48345401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
35, 187
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr1:48810720-48810978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 188
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr1:52755060-52755317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
35, 101
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr1:53311704-53311446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr1:53578530-53578272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr1:54471940-54472198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 189
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr1:55158909-55159167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 184
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr1:55273568-55273826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr1:55327763-55328016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 191
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr1:55780343-55780087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 66
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr1:56170433-56170176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 187
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr1:56205337-56205594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
125, 0
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr1:56666574-56666316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 189
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr1:57362859-57363117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr1:57506265-57506007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 189
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr1:57571306-57571047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
35, 192
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr1:57759387-57759131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 193
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr1:58340388-58340138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
35, 129
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr1:59483389-59483647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 145
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr1:60250952-60251210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 188
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr1:61331489-61331747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 189
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr1:61339846-61340104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 189
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr1:62507771-62508033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
35, 22
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr1:62927943-62927685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr1:63046359-63046101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr1:63340998-63341256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 189
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr1:63602314-63602573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr1:65390031-65389775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 187
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr1:66491055-66490797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr1:66971686-66971943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 65
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr1:67078353-67078608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
35, 154
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr1:68145497-68145755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 189
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr1:68610304-68610556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
125, 38
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr1:69503900-69504158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 188
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr1:69671147-69671405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr1:70037772-70038025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
20, 97
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr1:70051701-70051455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
35, 88
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr1:70864720-70864475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
35, 99
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr1:71559276-71559528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
35, 155
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr1:71795007-71794749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 187
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr1:72087073-72086815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 184
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr1:72766564-72766820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 60
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr1:72986932-72986674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 187
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr1:73010458-73010200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 188
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr1:73063864-73064119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 184
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr1:73463438-73463182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 160
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr1:73565004-73565262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 189
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr1:73967986-73967728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 189
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr1:75403368-75403110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 189
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr1:76618001-76618258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 182
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr1:76748918-76749172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 170
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr1:76878505-76878248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 93
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr1:77554529-77554782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
35, 100
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr1:77924955-77924697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 189
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr1:78586984-78587242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
35, 189
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr1:78921539-78921797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 188
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr1:79334513-79334771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
35, 187
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr1:79553969-79553712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
35, 151
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr1:80564603-80564861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 188
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr1:82091368-82091110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr1:83169916-83169658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 189
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr1:84447156-84446895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 188
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr1:85630810-85630552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 188
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr1:85773680-85773424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
34, 105
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr1:85776988-85777243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
35, 8
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr1:85807142-85807398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
9, 33
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr1:86544665-86544921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 19
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr1:86592829-86593088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 189
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr1:86599537-86599799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr1:86705611-86705368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 93
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr1:88179333-88179074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 196
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr1:89112295-89112048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
35, 101
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr1:89185990-89186242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
35, 116
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr1:89234558-89234816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr1:89431877-89431619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 188
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr1:89492763-89493014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
35, 60
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr1:89793427-89793169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 191
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr1:90393283-90393539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 191
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr1:90913303-90913045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr1:91105512-91105258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
35, 61
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr1:91673706-91673448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
35, 141
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr1:93850775-93850517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 189
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr1:94663127-94662869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 187
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr1:95456825-95456568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 24
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr1:98353921-98354179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr1:99118958-99118700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 188
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr1:99674862-99675120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 188
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr1:99916913-99916655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 185
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr1:100591299-100591556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 149
               

               
Conread position:
               
2-257
               

               
Cow position:
               
chr1:9261970-9261724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 188
               

               
Conread position:
               
2-257
               

               
Cow position:
               
chr1:14240593-14240852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
2-257
               

               
Cow position:
               
chr1:54933402-54933143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 188
               

               
Conread position:
               
2-257
               

               
Cow position:
               
chr1:55043790-55044047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
35, 60
               

               
Conread position:
               
2-265
               

               
Cow position:
               
chr1:3930866-3931132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 191
               

               
Conread position:
               
2-265
               

               
Cow position:
               
chr1:8828494-8828229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 8
               

               
Conread position:
               
2-265
               

               
Cow position:
               
chr1:12374830-12375097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 189
               

               
Conread position:
               
2-265
               

               
Cow position:
               
chr1:17938280-17938544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 184
               

               
Conread position:
               
2-265
               

               
Cow position:
               
chr1:22529337-22529600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 193
               

               
Conread position:
               
2-265
               

               
Cow position:
               
chr1:52355198-52355464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 191
               

               
Conread position:
               
2-265
               

               
Cow position:
               
chr1:67831662-67831928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 184
               

               
Conread position:
               
2-265
               

               
Cow position:
               
chr1:91902493-91902227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 188
               

               
Conread position:
               
2-265
               

               
Cow position:
               
chr1:92920762-92921028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 189
               

               
Conread position:
               
2-268
               

               
Cow position:
               
chr1:86496763-86496491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 189
               

               
Conread position:
               
2-270
               

               
Cow position:
               
chr1:18962274-18962530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
35, 70
               

               
Conread position:
               
2-270
               

               
Cow position:
               
chr1:56425384-56425115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 170
               

               
Conread position:
               
2-270
               

               
Cow position:
               
chr1:56726632-56726365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 71
               

               
Conread position:
               
2-270
               

               
Cow position:
               
chr1:61096974-61096698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
2-270
               

               
Cow position:
               
chr1:61342232-61342502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 184
               

               
Conread position:
               
2-270
               

               
Cow position:
               
chr1:81302588-81302316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 66
               

               
Conread position:
               
2-271
               

               
Cow position:
               
chr1:8602502-8602778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 187
               

               
Conread position:
               
2-272
               

               
Cow position:
               
chr1:24440588-24440859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 60
               

               
Conread position:
               
2-272
               

               
Cow position:
               
chr1:33547927-33548204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 189
               

               
Conread position:
               
2-274
               

               
Cow position:
               
chr1:25088197-25088471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
35, 21
               

               
Conread position:
               
2-275
               

               
Cow position:
               
chr1:67006352-67006072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
2-278
               

               
Cow position:
               
chr1:52371446-52371165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 184
               

               
Conread position:
               
2-278
               

               
Cow position:
               
chr1:52379767-52379486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 184
               

               
Conread position:
               
2-291
               

               
Cow position:
               
chr1:18698904-18698611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 188
               

               
Conread position:
               
2-301
               

               
Cow position:
               
chr1:17248189-17248492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 188
               

               
Conread position:
               
3-184
               

               
Cow position:
               
chr1:42554477-42554295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
33, 140
               

               
Conread position:
               
3-186
               

               
Cow position:
               
chr1:67913549-67913370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
34, 124
               

               
Conread position:
               
3-190
               

               
Cow position:
               
chr1:28176226-28176040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
34, 127
               

               
Conread position:
               
3-193
               

               
Cow position:
               
chr1:68950878-68950688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
27, 34
               

               
Conread position:
               
3-210
               

               
Cow position:
               
chr1:31352160-31352358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
123, 41
               

               
Conread position:
               
3-210
               

               
Cow position:
               
chr1:68282021-68281817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
33, 49
               

               
Conread position:
               
3-237
               

               
Cow position:
               
chr1:42054103-42054323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
34, 47
               

               
Conread position:
               
3-239
               

               
Cow position:
               
chr1:61727614-61727846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
27, 47
               

               
Conread position:
               
3-251
               

               
Cow position:
               
chr1:77657022-77656766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
55, 161
               

               
Conread position:
               
3-251
               

               
Cow position:
               
chr1:88028294-88028046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
209, 143
               

               
Conread position:
               
3-252
               

               
Cow position:
               
chr1:45021699-45021452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 192
               

               
Conread position:
               
3-253
               

               
Cow position:
               
chr1:51980448-51980206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
34, 63
               

               
Conread position:
               
3-253
               

               
Cow position:
               
chr1:73762072-73762326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 184
               

               
Conread position:
               
3-254
               

               
Cow position:
               
chr1:16116926-16117181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 187
               

               
Conread position:
               
3-256
               

               
Cow position:
               
chr1:7739185-7738930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
34, 45
               

               
Conread position:
               
3-256
               

               
Cow position:
               
chr1:7837288-7837536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 187
               

               
Conread position:
               
3-256
               

               
Cow position:
               
chr1:16820083-16819828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 88
               

               
Conread position:
               
3-256
               

               
Cow position:
               
chr1:21113950-21114205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 187
               

               
Conread position:
               
3-256
               

               
Cow position:
               
chr1:22481185-22481444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 190
               

               
Conread position:
               
3-256
               

               
Cow position:
               
chr1:24562282-24562532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
34, 95
               

               
Conread position:
               
3-256
               

               
Cow position:
               
chr1:24571673-24571919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
34, 51
               

               
Conread position:
               
3-256
               

               
Cow position:
               
chr1:29461801-29461547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
30, 142
               

               
Conread position:
               
3-256
               

               
Cow position:
               
chr1:29656661-29656402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 6
               

               
Conread position:
               
3-256
               

               
Cow position:
               
chr1:30033739-30033499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
32, 95
               

               
Conread position:
               
3-256
               

               
Cow position:
               
chr1:30495031-30494784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 37
               

               
Conread position:
               
3-256
               

               
Cow position:
               
chr1:33716433-33716176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 187
               

               
Conread position:
               
3-256
               

               
Cow position:
               
chr1:38279263-38279524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 191
               

               
Conread position:
               
3-256
               

               
Cow position:
               
chr1:38418294-38418039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
35, 192
               

               
Conread position:
               
3-256
               

               
Cow position:
               
chr1:39480018-39480268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
34, 118
               

               
Conread position:
               
3-256
               

               
Cow position:
               
chr1:40509785-40510044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 156
               

               
Conread position:
               
3-256
               

               
Cow position:
               
chr1:40532411-40532654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
34, 71
               

               
Conread position:
               
3-256
               

               
Cow position:
               
chr1:50764620-50764374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 119
               

               
Conread position:
               
3-256
               

               
Cow position:
               
chr1:51884082-51883831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 202
               

               
Conread position:
               
3-256
               

               
Cow position:
               
chr1:53309191-53309441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 59
               

               
Conread position:
               
3-256
               

               
Cow position:
               
chr1:53371842-53371574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
33, 203
               

               
Conread position:
               
3-256
               

               
Cow position:
               
chr1:56746357-56746100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 187
               

               
Conread position:
               
3-256
               

               
Cow position:
               
chr1:57396849-57397097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
34, 46
               

               
Conread position:
               
3-256
               

               
Cow position:
               
chr1:57958083-57958347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
33, 201
               

               
Conread position:
               
3-256
               

               
Cow position:
               
chr1:58192333-58192589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
3-256
               

               
Cow position:
               
chr1:63036094-63035838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
33, 72
               

               
Conread position:
               
3-256
               

               
Cow position:
               
chr1:71792402-71792146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 114
               

               
Conread position:
               
3-256
               

               
Cow position:
               
chr1:76873355-76873098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 188
               

               
Conread position:
               
3-256
               

               
Cow position:
               
chr1:85795419-85795163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 144
               

               
Conread position:
               
3-256
               

               
Cow position:
               
chr1:95474429-95474685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 190
               

               
Conread position:
               
3-256
               

               
Cow position:
               
chr1:99581983-99582241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 214
               

               
Conread position:
               
3-256
               

               
Cow position:
               
chr1:101833868-101833613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
34, 56
               

               
Conread position:
               
3-256
               

               
Cow position:
               
chr1:102552476-102552233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
43, 147
               

               
Conread position:
               
3-256
               

               
Cow position:
               
chr1:102814946-102814689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 187
               

               
Conread position:
               
3-257
               

               
Cow position:
               
chr1:61747979-61748235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
34, 70
               

               
Conread position:
               
3-259
               

               
Cow position:
               
chr1:44127369-44127625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
34, 59
               

               
Conread position:
               
3-261
               

               
Cow position:
               
chr1:31190958-31191211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
189, 12
               

               
Conread position:
               
3-261
               

               
Cow position:
               
chr1:43449036-43449301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 191
               

               
Conread position:
               
3-265
               

               
Cow position:
               
chr1:12468320-12468582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
34, 183
               

               
Conread position:
               
3-265
               

               
Cow position:
               
chr1:16973643-16973904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
124, 34
               

               
Conread position:
               
3-270
               

               
Cow position:
               
chr1:29038013-29037742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
34, 187
               

               
Conread position:
               
3-270
               

               
Cow position:
               
chr1:63240166-63239897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 193
               

               
Conread position:
               
3-272
               

               
Cow position:
               
chr1:79590324-79590050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 155
               

               
Conread position:
               
3-275
               

               
Cow position:
               
chr1:102321645-102321915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 72
               

               
Conread position:
               
4-185
               

               
Cow position:
               
chr1:52171325-52171509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
4-192
               

               
Cow position:
               
chr1:20146884-20146697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
33, 59
               

               
Conread position:
               
4-253
               

               
Cow position:
               
chr1:6165447-6165203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
209, 42
               

               
Conread position:
               
4-253
               

               
Cow position:
               
chr1:99572095-99572345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 54
               

               
Conread position:
               
4-256
               

               
Cow position:
               
chr1:69406630-69406374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
4-256
               

               
Cow position:
               
chr1:100888036-100888291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 185
               

               
Conread position:
               
4-257
               

               
Cow position:
               
chr1:92008735-92008489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
190, 96
               

               
Conread position:
               
4-272
               

               
Cow position:
               
chr1:89484564-89484299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
33, 81
               

               
Conread position:
               
8-183
               

               
Cow position:
               
chr1:56190951-56191127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
29, 131
               

               
Conread position:
               
8-253
               

               
Cow position:
               
chr1:13579310-13579554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
29, 84
               

               
Conread position:
               
8-253
               

               
Cow position:
               
chr1:102431271-102431520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
27, 179
               

               
Conread position:
               
8-256
               

               
Cow position:
               
chr1:6240813-6241057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
154, 36
               

               
Conread position:
               
8-256
               

               
Cow position:
               
chr1:46839247-46839005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
137, 36
               

               
Conread position:
               
8-256
               

               
Cow position:
               
chr1:61203852-61203600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 183
               

               
Conread position:
               
8-256
               

               
Cow position:
               
chr1:61563502-61563253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
29, 114
               

               
Conread position:
               
8-256
               

               
Cow position:
               
chr1:97285193-97285439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 54
               

               
Conread position:
               
9-245
               

               
Cow position:
               
chr1:71691020-71690783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
21, 32
               

               
Conread position:
               
9-256
               

               
Cow position:
               
chr1:47119424-47119173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 182
               

               
Conread position:
               
9-256
               

               
Cow position:
               
chr1:98618131-98617888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
30, 43
               

               
Conread position:
               
9-265
               

               
Cow position:
               
chr1:61746715-61746960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
27, 103
               

               
Conread position:
               
10-256
               

               
Cow position:
               
chr1:58419137-58418892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 158
               

               
Conread position:
               
11-234
               

               
Cow position:
               
chr1:77867022-77866796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
26, 86
               

               
Conread position:
               
12-253
               

               
Cow position:
               
chr1:46694443-46694688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
25, 80
               

               
Conread position:
               
13-256
               

               
Cow position:
               
chr1:21577005-21576758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
14-256
               

               
Cow position:
               
chr1:18024358-18024598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 161
               

               
Conread position:
               
14-256
               

               
Cow position:
               
chr1:101523934-101524175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 184
               

               
Conread position:
               
14-270
               

               
Cow position:
               
chr1:88328025-88328279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 134
               

               
Conread position:
               
15-148
               

               
Cow position:
               
chr1:15333109-15332972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
22, 72
               

               
Conread position:
               
15-208
               

               
Cow position:
               
chr1:16372734-16372543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
22, 175
               

               
Conread position:
               
15-250
               

               
Cow position:
               
chr1:32912963-32912729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
15, 49
               

               
Conread position:
               
15-253
               

               
Cow position:
               
chr1:25178564-25178806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
15-253
               

               
Cow position:
               
chr1:70535003-70535244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
22, 102
               

               
Conread position:
               
15-256
               

               
Cow position:
               
chr1:24781019-24781262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
22, 226
               

               
Conread position:
               
15-256
               

               
Cow position:
               
chr1:28677513-28677274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
113, 25
               

               
Conread position:
               
15-256
               

               
Cow position:
               
chr1:29410748-29410994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
15-256
               

               
Cow position:
               
chr1:33987362-33987609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
22, 206
               

               
Conread position:
               
16-256
               

               
Cow position:
               
chr1:90605417-90605660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
5, 22
               

               
Conread position:
               
17-252
               

               
Cow position:
               
chr1:82369875-82369640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
20, 41
               

               
Conread position:
               
17-256
               

               
Cow position:
               
chr1:49132714-49132957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 141
               

               
Conread position:
               
18-256
               

               
Cow position:
               
chr1:32961045-32961287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
19, 173
               

               
Conread position:
               
18-256
               

               
Cow position:
               
chr1:53520120-53519880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
18-256
               

               
Cow position:
               
chr1:64594852-64595094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
19-247
               

               
Cow position:
               
chr1:30035071-30034852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
18, 87
               

               
Conread position:
               
20-256
               

               
Cow position:
               
chr1:31414771-31415006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 160
               

               
Conread position:
               
23-256
               

               
Cow position:
               
chr1:67974764-67974988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
15, 59
               

               
Conread position:
               
23-265
               

               
Cow position:
               
chr1:23099089-23098846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
14, 221
               

               
Conread position:
               
26-256
               

               
Cow position:
               
chr1:21459122-21458904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
11, 36
               

               
Conread position:
               
26-256
               

               
Cow position:
               
chr1:84283964-84284198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
11, 165
               

               
Conread position:
               
28-253
               

               
Cow position:
               
chr1:21785928-21785702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
97, 187
               

               
Conread position:
               
34-256
               

               
Cow position:
               
chr1:31707923-31707698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
93, 155
               

               
Conread position:
               
41-253
               

               
Cow position:
               
chr1:60342489-60342275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
86, 48
               

               
Conread position:
               
43-256
               

               
Cow position:
               
chr1:27309651-27309860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
84, 54
               

               
Conread position:
               
44-256
               

               
Cow position:
               
chr1:30103146-30103361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
83, 145
               

               
Conread position:
               
44-256
               

               
Cow position:
               
chr1:55493633-55493848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
83, 145
               

               
Conread position:
               
44-283
               

               
Cow position:
               
chr1:102783967-102783728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
82, 40
               

               
Conread position:
               
46-253
               

               
Cow position:
               
chr1:81860082-81860291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
80, 11
               

               
Conread position:
               
46-256
               

               
Cow position:
               
chr1:22629417-22629617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
166, 28
               

               
Conread position:
               
46-265
               

               
Cow position:
               
chr1:101130592-101130801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
80, 51
               

               
Conread position:
               
47-256
               

               
Cow position:
               
chr1:31105965-31106177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
80, 143
               

               
Conread position:
               
48-253
               

               
Cow position:
               
chr1:19162395-19162187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
51-252
               

               
Cow position:
               
chr1:72103534-72103336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
162, 69
               

               
Conread position:
               
52-253
               

               
Cow position:
               
chr1:88984035-88984232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
79, 33
               

               
Conread position:
               
59-256
               

               
Cow position:
               
chr1:52068043-52067843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
68, 131
               

               
Conread position:
               
59-256
               

               
Cow position:
               
chr1:64942120-64942320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
67, 131
               

               
Conread position:
               
59-256
               

               
Cow position:
               
chr1:91889973-91890175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
62, 133
               

               
Conread position:
               
59-256
               

               
Cow position:
               
chr1:100709487-100709287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
67, 131
               

               
Conread position:
               
60-256
               

               
Cow position:
               
chr1:8745912-8745713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
67, 130
               

               
Conread position:
               
60-256
               

               
Cow position:
               
chr1:29365821-29365622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
67, 130
               

               
Conread position:
               
65-253
               

               
Cow position:
               
chr1:53368618-53368432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
61, 117
               

               
Conread position:
               
66-256
               

               
Cow position:
               
chr1:31362708-31362897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
146, 54
               

               
Conread position:
               
68-256
               

               
Cow position:
               
chr1:9262698-9262889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
59, 124
               

               
Conread position:
               
68-256
               

               
Cow position:
               
chr1:18486770-18486961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
58, 121
               

               
Conread position:
               
69-270
               

               
Cow position:
               
chr1:28413818-28414023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
5, 0
               

               
Conread position:
               
70-256
               

               
Cow position:
               
chr1:98535001-98534813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
57, 120
               

               
Conread position:
               
72-256
               

               
Cow position:
               
chr1:27494358-27494173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
57, 134
               

               
Conread position:
               
72-256
               

               
Cow position:
               
chr1:72806792-72806605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
55, 118
               

               
Conread position:
               
81-256
               

               
Cow position:
               
chr1:9308626-9308802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
45, 109
               

               
Conread position:
               
81-256
               

               
Cow position:
               
chr1:9377086-9377263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
131, 108
               

               
Conread position:
               
82-256
               

               
Cow position:
               
chr1:33655792-33655969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
45, 107
               

               
Conread position:
               
85-256
               

               
Cow position:
               
chr1:51393472-51393297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
86-256
               

               
Cow position:
               
chr1:48036687-48036515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
41, 54
               

               
Conread position:
               
89-256
               

               
Cow position:
               
chr1:57526667-57526492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
37, 108
               

               
Conread position:
               
93-256
               

               
Cow position:
               
chr1:58172117-58171954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
96, 27
               

               
Conread position:
               
97-256
               

               
Cow position:
               
chr1:33039654-33039816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
30, 93
               

               
Conread position:
               
105-256
               

               
Cow position:
               
chr1:59590769-59590925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
107-256
               

               
Cow position:
               
chr1:38478673-38478521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
1-256
               

               
Cow position:
               
chr10:24296997-24297262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 195
               

               
Conread position:
               
1-256
               

               
Cow position:
               
chr10:26291988-26292248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 190
               

               
Conread position:
               
1-256
               

               
Cow position:
               
chr10:31655725-31655466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
1-256
               

               
Cow position:
               
chr10:48373948-48374204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
36, 87
               

               
Conread position:
               
1-256
               

               
Cow position:
               
chr10:53828081-53827822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
2-183
               

               
Cow position:
               
chr10:15753855-15753675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
35, 22
               

               
Conread position:
               
2-183
               

               
Cow position:
               
chr10:31637158-31636982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
36, 124
               

               
Conread position:
               
2-186
               

               
Cow position:
               
chr10:31005818-31006004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 7
               

               
Conread position:
               
2-187
               

               
Cow position:
               
chr10:43489126-43488939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
2-205
               

               
Cow position:
               
chr10:28930605-28930806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
35, 188
               

               
Conread position:
               
2-217
               

               
Cow position:
               
chr10:7825903-7826117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
35, 188
               

               
Conread position:
               
2-231
               

               
Cow position:
               
chr10:31669766-31669532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
2-241
               

               
Cow position:
               
chr10:60354637-60354394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 145
               

               
Conread position:
               
2-244
               

               
Cow position:
               
chr10:62405297-62405542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
35, 183
               

               
Conread position:
               
2-249
               

               
Cow position:
               
chr10:130419-130168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
2-249
               

               
Cow position:
               
chr10:39775094-39775334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
138, 0
               

               
Conread position:
               
2-250
               

               
Cow position:
               
chr10:34664279-34664522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 127
               

               
Conread position:
               
2-251
               

               
Cow position:
               
chr10:7274240-7274493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
35, 189
               

               
Conread position:
               
2-251
               

               
Cow position:
               
chr10:21466270-21466523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
35, 187
               

               
Conread position:
               
2-252
               

               
Cow position:
               
chr10:22381216-22380961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 189
               

               
Conread position:
               
2-252
               

               
Cow position:
               
chr10:34334516-34334770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 207
               

               
Conread position:
               
2-252
               

               
Cow position:
               
chr10:38397258-38397509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 151
               

               
Conread position:
               
2-252
               

               
Cow position:
               
chr10:52028011-52027759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
35, 99
               

               
Conread position:
               
2-253
               

               
Cow position:
               
chr10:16646813-16647066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 157
               

               
Conread position:
               
2-253
               

               
Cow position:
               
chr10:22104979-22104724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
35, 184
               

               
Conread position:
               
2-253
               

               
Cow position:
               
chr10:44765187-44764932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 188
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr10:325263-325523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 88
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr10:326588-326331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 88
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr10:1376996-1377253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 114
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr10:1380994-1380737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 71
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr10:1662474-1662726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 188
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr10:2116950-2117201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 125
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr10:2736514-2736256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 240
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr10:3494436-3494692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr10:3506647-3506900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 132
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr10:4640858-4641117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 184
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr10:5858321-5858063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr10:6221744-6221486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 188
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr10:6539281-6539024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 141
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr10:7259771-7260029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 188
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr10:7278605-7278860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 184
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr10:7497636-7497894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 189
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr10:7894950-7895206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 191
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr10:8293629-8293370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr10:8459722-8459467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 188
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr10:8682123-8681865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 188
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr10:9681674-9681927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 172
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr10:10173401-10173143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 189
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr10:10585619-10585367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
124, 35
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr10:11623229-11623485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 188
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr10:12653702-12653444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 188
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr10:14332342-14332600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr10:14422387-14422129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 189
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr10:14807436-14807178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 188
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr10:15490326-15490068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 188
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr10:15888474-15888223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
35, 73
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr10:17222871-17222613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr10:19141111-19141368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
35, 154
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr10:19295295-19295549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
35, 96
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr10:19843170-19842912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 189
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr10:20388317-20388563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
38, 188
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr10:21490433-21490178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 22
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr10:21729204-21729462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 189
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr10:21737178-21737435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
35, 187
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr10:22250729-22250472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
35, 154
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr10:22344959-22344704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 56
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr10:23412545-23412287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 191
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr10:23648794-23649052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 184
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr10:24751409-24751157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
34, 128
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr10:25005763-25005507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr10:25563054-25563313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 20
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr10:26766046-26765789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 188
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr10:28030437-28030693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 99
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr10:28236000-28235745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 64
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr10:29777153-29776895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 189
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr10:30689499-30689239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 191
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr10:30720194-30719936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr10:31021556-31021814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 189
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr10:31734175-31733923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 35
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr10:32282513-32282255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 189
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr10:32365438-32365180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 188
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr10:32700449-32700193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 214
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr10:32704261-32704003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr10:35823844-35824102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr10:36878957-36879215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 189
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr10:37125718-37125976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 189
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr10:37138805-37139063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 189
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr10:37773378-37773120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 188
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr10:39037552-39037810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 187
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr10:39211271-39211014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 141
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr10:39441666-39441410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 47
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr10:39811012-39811270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr10:39971442-39971183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr10:40591714-40591456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 188
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr10:41560977-41561235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 188
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr10:41570599-41570341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 192
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr10:42214374-42214116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 189
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr10:43081258-43081002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 214
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr10:44113801-44114059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 189
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr10:44705215-44705469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
35, 47
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr10:44866373-44866115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
35, 132
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr10:45648354-45648098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr10:45661828-45661571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 188
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr10:47096533-47096791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 189
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr10:48241058-48241316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 188
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr10:48384734-48384984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
128, 28
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr10:48909434-48909176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 188
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr10:49504432-49504174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 189
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr10:51558899-51558641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 189
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr10:52826130-52826388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 188
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr10:54072282-54072531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 188
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr10:54376435-54376693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr10:54960236-54960490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
33, 56
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr10:55930981-55930723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 189
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr10:55975036-55974778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 188
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr10:57553642-57553899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 188
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr10:57986192-57986455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
35, 73
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr10:64304534-64304785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
124, 92
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr10:65810670-65810928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 191
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr10:66495902-66496161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
34, 189
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr10:66987442-66987701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 189
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr10:67580302-67580549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
34, 96
               

               
Conread position:
               
2-257
               

               
Cow position:
               
chr10:56078244-56077985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 189
               

               
Conread position:
               
2-259
               

               
Cow position:
               
chr10:48741978-48742233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
33, 84
               

               
Conread position:
               
2-265
               

               
Cow position:
               
chr10:277859-278124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 64
               

               
Conread position:
               
2-265
               

               
Cow position:
               
chr10:14904710-14904447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 63
               

               
Conread position:
               
2-265
               

               
Cow position:
               
chr10:21397722-21397988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 188
               

               
Conread position:
               
2-265
               

               
Cow position:
               
chr10:26539412-26539677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 145
               

               
Conread position:
               
2-265
               

               
Cow position:
               
chr10:26922790-26923056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
35, 188
               

               
Conread position:
               
2-265
               

               
Cow position:
               
chr10:29174723-29174457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 257
               

               
Conread position:
               
2-265
               

               
Cow position:
               
chr10:30682001-30682261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
124, 38
               

               
Conread position:
               
2-265
               

               
Cow position:
               
chr10:38273616-38273359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
34, 67
               

               
Conread position:
               
2-270
               

               
Cow position:
               
chr10:37908651-37908924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 188
               

               
Conread position:
               
2-270
               

               
Cow position:
               
chr10:47910114-47909842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 188
               
2-272UCSC Genome Browser

               
Conread position:
               

               

               
Cow position:
               
chr10:50110708-50110981 (view  custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 170
               
2-282UCSC Genome Browser

               
               
               
Conread position:

               
               
               
Cow position:
chr10:63776327-63776042 (view  custom track)

               
               
               
Alignm length:
292

               
               
               
Alignm identity:
222

               
               
               
Alignm E-value:
0

               
               
               
Alignm gaps (pig, cow):
35, 187
3-187UCSC Genome Browser

               
               
               
Conread position:

               
               
               
Cow position:
chr10:9799020-9799205 (view  custom track)

               
               
               
Alignm length:
187

               
               
               
Alignm identity:
160

               
               
               
Alignm E-value:
0

               
               
               
Alignm gaps (pig, cow):
34, 105

               
               
               Conread position:3-187
               
               
               Cow position:chr10:43288883-43289066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:151
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):32, 119

               
               
               Conread position:3-235
               
               
               Cow position:chr10:24963-24728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:186
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 23

               
               
               Conread position:3-239
               
               
               Cow position:chr10:53157925-53158163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:182
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 190

               
               
               Conread position:3-252
               
               
               Cow position:chr10:41160903-41160649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 188

               
               
               Conread position:3-253
               
               
               Cow position:chr10:60029219-60028966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):32, 162

               
               
               Conread position:3-256
               
               
               Cow position:chr10:2516531-2516277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 75

               
               
               Conread position:3-256
               
               
               Cow position:chr10:3317246-3317002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):34, 95

               
               
               Conread position:3-256
               
               
               Cow position:chr10:11216696-11216951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 188

               
               
               Conread position:3-256
               
               
               Cow position:chr10:14948258-14947998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:190
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:3-256
               
               
               Cow position:chr10:18885750-18886007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):34, 82

               
               
               Conread position:3-256
               
               
               Cow position:chr10:20372929-20373190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 191

               
               
               Conread position:3-256
               
               
               Cow position:chr10:21709741-21709994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:195
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):34, 54

               
               
               Conread position:3-256
               
               
               Cow position:chr10:29628772-29629027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):124, 37

               
               
               Conread position:3-256
               
               
               Cow position:chr10:33556165-33556416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:191
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):34, 124

               
               
               Conread position:3-256
               
               
               Cow position:chr10:34666415-34666671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:190
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):34, 60

               
               
               Conread position:3-256
               
               
               Cow position:chr10:37530326-37530569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:187
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):34, 49

               
               
               Conread position:3-256
               
               
               Cow position:chr10:38941617-38941359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:201
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):34, 60

               
               
               Conread position:3-256
               
               
               Cow position:chr10:40269362-40269108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 153

               
               
               Conread position:3-256
               
               
               Cow position:chr10:45484510-45484763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:194
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):34, 142

               
               
               Conread position:3-256
               
               
               Cow position:chr10:46226317-46226065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 109

               
               
               Conread position:3-256
               
               
               Cow position:chr10:47772912-47772658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 141

               
               
               Conread position:3-256
               
               
               Cow position:chr10:55096558-55096304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:190
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:3-256
               
               
               Cow position:chr10:63881736-63881479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:3-258
               
               
               Cow position:chr10:22320717-22320462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:189
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 189

               
               
               Conread position:3-265
               
               
               Cow position:chr10:10570655-10570393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):34, 92

               
               
               Conread position:3-265
               
               
               Cow position:chr10:25341604-25341342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 191

               
               
               Conread position:3-270
               
               
               Cow position:chr10:50016887-50017139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):34, 59

               
               
               Conread position:3-272
               
               
               Cow position:chr10:59173572-59173844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 63

               
               
               Conread position:3-275
               
               
               Cow position:chr10:31527195-31526922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 119

               
               
               Conread position:3-291
               
               
               Cow position:chr10:20380490-20380790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:4-256
               
               
               Cow position:chr10:31374919-31375175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:4-256
               
               
               Cow position:chr10:35353578-35353829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 189

               
               
               Conread position:4-270
               
               
               Cow position:chr10:60960107-60959838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:195
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):33, 62

               
               
               Conread position:4-272
               
               
               Cow position:chr10:2466408-2466678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 132

               
               
               Conread position:5-246
               
               
               Cow position:chr10:39638197-39637952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:189
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):32, 185

               
               
               Conread position:8-252
               
               
               Cow position:chr10:14982482-14982716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):29, 75

               
               
               Conread position:8-256
               
               
               Cow position:chr10:20516407-20516153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 181

               
               
               Conread position:8-256
               
               
               Cow position:chr10:68095577-68095828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:180
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):29, 44

               
               
               Conread position:8-259
               
               
               Cow position:chr10:185554-185299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:8-274
               
               
               Cow position:chr10:55286435-55286171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):28, 72

               
               
               Conread position:8-283
               
               
               Cow position:chr10:22978666-22978945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:9-253
               
               
               Cow position:chr10:19522661-19522909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 108

               
               
               Conread position:9-256
               
               
               Cow position:chr10:1979490-1979740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):28, 60

               
               
               Conread position:9-256
               
               
               Cow position:chr10:27120420-27120668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:184
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):28, 148

               
               
               Conread position:9-256
               
               
               Cow position:chr10:55011297-55011047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:181
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):28, 65

               
               
               Conread position:9-256
               
               
               Cow position:chr10:64347456-64347211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 123

               
               
               Conread position:9-261
               
               
               Cow position:chr10:28568922-28568673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):117, 31

               
               
               Conread position:9-277
               
               
               Cow position:chr10:1720374-1720646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 182

               
               
               Conread position:10-250
               
               
               Cow position:chr10:21414018-21414260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:189
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 183

               
               
               Conread position:10-256
               
               
               Cow position:chr10:40737166-40736923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 117

               
               
               Conread position:10-256
               
               
               Cow position:chr10:41623067-41622819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 152

               
               
               Conread position:13-256
               
               
               Cow position:chr10:21449707-21449958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:195
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):24, 181

               
               
               Conread position:13-256
               
               
               Cow position:chr10:32087169-32086923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:193
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 177

               
               
               Conread position:13-256
               
               
               Cow position:chr10:63954983-63954745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:191
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 117

               
               
               Conread position:14-256
               
               
               Cow position:chr10:19894489-19894251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 113

               
               
               Conread position:14-256
               
               
               Cow position:chr10:41139535-41139780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 33

               
               
               Conread position:14-257
               
               
               Cow position:chr10:50452039-50451797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:191
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):23, 158

               
               
               Conread position:15-256
               
               
               Cow position:chr10:10721765-10722010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:180
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:15-256
               
               
               Cow position:chr10:11110754-11110510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 11

               
               
               Conread position:15-256
               
               
               Cow position:chr10:40643507-40643259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:186
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):22, 32

               
               
               Conread position:15-256
               
               
               Cow position:chr10:49914273-49914518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:191
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):21, 178

               
               
               Conread position:15-256
               
               
               Cow position:chr10:54928446-54928674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:179
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):20, 97

               
               
               Conread position:15-256
               
               
               Cow position:chr10:59840295-59840534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):20, 42

               
               
               Conread position:15-256
               
               
               Cow position:chr10:65790816-65791065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):112, 25

               
               
               Conread position:15-272
               
               
               Cow position:chr10:37788518-37788784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:200
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):22, 177

               
               
               Conread position:16-186
               
               
               Cow position:chr10:39079893-39079721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:135
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:17-253
               
               
               Cow position:chr10:17491923-17492157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:189
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 105

               
               
               Conread position:17-256
               
               
               Cow position:chr10:45670417-45670658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:177
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:17-256
               
               
               Cow position:chr10:50199459-50199223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:190
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):20, 33

               
               
               Conread position:18-256
               
               
               Cow position:chr10:69935625-69935862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:185
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):17, 111

               
               
               Conread position:19-253
               
               
               Cow position:chr10:55036901-55036660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 175

               
               
               Conread position:22-272
               
               
               Cow position:chr10:40148679-40148922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:194
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):15, 27

               
               
               Conread position:23-257
               
               
               Cow position:chr10:24757598-24757363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:169
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):14, 170

               
               
               Conread position:24-256
               
               
               Cow position:chr10:16929640-16929404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:192
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 165

               
               
               Conread position:24-256
               
               
               Cow position:chr10:42745058-42744832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):13, 38

               
               
               Conread position:29-253
               
               
               Cow position:chr10:41917468-41917696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):8, 21

               
               
               Conread position:30-253
               
               
               Cow position:chr10:31465751-31465526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):96, 31

               
               
               Conread position:37-256
               
               
               Cow position:chr10:19491310-19491536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):9, 156

               
               
               Conread position:44-256
               
               
               Cow position:chr10:18041432-18041222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):83, 45

               
               
               Conread position:45-239
               
               
               Cow position:chr10:14849003-14849194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):146, 71

               
               
               Conread position:45-253
               
               
               Cow position:chr10:42754507-42754303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):169, 21

               
               
               Conread position:46-256
               
               
               Cow position:chr10:40376461-40376248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:166
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):80, 143

               
               
               Conread position:54-256
               
               
               Cow position:chr10:19069235-19069031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):72, 29

               
               
               Conread position:59-256
               
               
               Cow position:chr10:38818348-38818148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):68, 130

               
               
               Conread position:72-243
               
               
               Cow position:chr10:13419329-13419499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):119, 48

               
               
               Conread position:81-256
               
               
               Cow position:chr10:14621770-14621592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):46, 108

               
               
               Conread position:81-256
               
               
               Cow position:chr10:61312903-61312725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:88-256
               
               
               Cow position:chr10:3181153-3181315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):39, 83

               
               
               Conread position:89-252
               
               
               Cow position:chr10:27004169-27004335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:132
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):38, 101

               
               
               Conread position:89-256
               
               
               Cow position:chr10:26957350-26957183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):38, 100

               
               
               Conread position:94-256
               
               
               Cow position:chr10:18106970-18106805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:128
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):33, 123

               
               
               Conread position:98-257
               
               
               Cow position:chr10:31741214-31741376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:127
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):29, 91

               
               
               Conread position:1-253
               
               
               Cow position:chr11:44915546-44915803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:195
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):30, 42

               
               
               Conread position:1-256
               
               
               Cow position:chr11:417334-417594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 191

               
               
               Conread position:1-256
               
               
               Cow position:chr11:56463500-56463241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 190

               
               
               Conread position:1-256
               
               
               Cow position:chr11:71332639-71332380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 13

               
               
               Conread position:1-257
               
               
               Cow position:chr11:32077645-32077903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 227

               
               
               Conread position:1-275
               
               
               Cow position:chr11:84967246-84966965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 189

               
               
               Conread position:1-302
               
               
               Cow position:chr11:10851251-10850947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):125, 257

               
               
               Conread position:2-177
               
               
               Cow position:chr11:31236266-31236439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):35, 101

               
               
               Conread position:2-183
               
               
               Cow position:chr11:38842757-38842580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):93, 35

               
               
               Conread position:2-187
               
               
               Cow position:chr11:75256327-75256140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:150
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-190
               
               
               Cow position:chr11:38097599-38097783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):35, 96

               
               
               Conread position:2-210
               
               
               Cow position:chr11:47757851-47758057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:172
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 191

               
               
               Conread position:2-210
               
               
               Cow position:chr11:74389336-74389130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:162
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-210
               
               
               Cow position:chr11:77033955-77034161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:165
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):35, 184

               
               
               Conread position:2-247
               
               
               Cow position:chr11:48411665-48411412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:186
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:2-249
               
               
               Cow position:chr11:76566602-76566350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-252
               
               
               Cow position:chr11:9153768-9154013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:193
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):190, 26

               
               
               Conread position:2-252
               
               
               Cow position:chr11:31836321-31836073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-252
               
               
               Cow position:chr11:37279445-37279691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:185
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):33, 7

               
               
               Conread position:2-252
               
               
               Cow position:chr11:45155611-45155864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:191
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):34, 60

               
               
               Conread position:2-252
               
               
               Cow position:chr11:67453790-67453538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:195
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):35, 59

               
               
               Conread position:2-253
               
               
               Cow position:chr11:7229497-7229242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-253
               
               
               Cow position:chr11:10958966-10958711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-253
               
               
               Cow position:chr11:31834124-31834379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-253
               
               
               Cow position:chr11:65760470-65760724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 93

               
               
               Conread position:2-256
               
               
               Cow position:chr11:1504859-1505118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:192
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr11:2285850-2285592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr11:3238439-3238180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr11:3496180-3495922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr11:4024218-4024470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:195
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):38, 60

               
               
               Conread position:2-256
               
               
               Cow position:chr11:4267018-4267276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 183

               
               
               Conread position:2-256
               
               
               Cow position:chr11:5273437-5273695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr11:5482309-5482567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 184

               
               
               Conread position:2-256
               
               
               Cow position:chr11:6343596-6343339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:191
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr11:7719378-7719636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr11:8366697-8366439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 191

               
               
               Conread position:2-256
               
               
               Cow position:chr11:9388474-9388216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr11:9708285-9708027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:198
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):36, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr11:10698609-10698867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr11:10871688-10871946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr11:11592117-11591856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr11:11991136-11990876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 186

               
               
               Conread position:2-256
               
               
               Cow position:chr11:12178225-12177967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:193
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr11:12316933-12317191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr11:12353755-12354013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr11:14259824-14260078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 191

               
               
               Conread position:2-256
               
               
               Cow position:chr11:15047596-15047338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr11:15495525-15495267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr11:15836048-15835791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr11:15988425-15988167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:193
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr11:16547813-16548071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr11:17549295-17549037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr11:17832071-17832314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:186
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):56, 96

               
               
               Conread position:2-256
               
               
               Cow position:chr11:17854231-17853973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr11:17980157-17980413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 67

               
               
               Conread position:2-256
               
               
               Cow position:chr11:17997797-17998054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 164

               
               
               Conread position:2-256
               
               
               Cow position:chr11:19060937-19061195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 187

               
               
               Conread position:2-256
               
               
               Cow position:chr11:19099348-19099606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr11:20285481-20285739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr11:20731085-20731343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr11:21620278-21620019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr11:22617809-22618067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr11:22933490-22933744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 130

               
               
               Conread position:2-256
               
               
               Cow position:chr11:23883484-23883226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 185

               
               
               Conread position:2-256
               
               
               Cow position:chr11:24333856-24334114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr11:24493671-24493929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr11:25564889-25564632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 178

               
               
               Conread position:2-256
               
               
               Cow position:chr11:25759879-25759632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:201
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):35, 26

               
               
               Conread position:2-256
               
               
               Cow position:chr11:25808613-25808868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):35, 170

               
               
               Conread position:2-256
               
               
               Cow position:chr11:26550613-26550356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 228

               
               
               Conread position:2-256
               
               
               Cow position:chr11:26592640-26592898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr11:27724764-27725022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr11:27922933-27922673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr11:28125650-28125394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 66

               
               
               Conread position:2-256
               
               
               Cow position:chr11:28631670-28631412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr11:30200562-30200814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:191
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 119

               
               
               Conread position:2-256
               
               
               Cow position:chr11:30255575-30255312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:196
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr11:30700631-30700373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:193
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr11:30777100-30776842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 187

               
               
               Conread position:2-256
               
               
               Cow position:chr11:30929519-30929261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr11:31929577-31929329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):35, 12

               
               
               Conread position:2-256
               
               
               Cow position:chr11:32455191-32454933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr11:32762589-32762331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 187

               
               
               Conread position:2-256
               
               
               Cow position:chr11:32875806-32876064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr11:34638367-34638625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr11:35541933-35542189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 47

               
               
               Conread position:2-256
               
               
               Cow position:chr11:35738207-35738463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 161

               
               
               Conread position:2-256
               
               
               Cow position:chr11:36930397-36930651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 191

               
               
               Conread position:2-256
               
               
               Cow position:chr11:38599577-38599835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr11:38832342-38832598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 184

               
               
               Conread position:2-256
               
               
               Cow position:chr11:40772933-40773176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr11:41093725-41093983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr11:41167557-41167815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr11:41260791-41261049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr11:41314432-41314175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 190

               
               
               Conread position:2-256
               
               
               Cow position:chr11:43510838-43511096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 187

               
               
               Conread position:2-256
               
               
               Cow position:chr11:44153946-44154199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 172

               
               
               Conread position:2-256
               
               
               Cow position:chr11:44255210-44254953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr11:44580097-44580354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:197
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr11:46780933-46781189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:193
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):35, 60

               
               
               Conread position:2-256
               
               
               Cow position:chr11:47972715-47972973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr11:50510535-50510793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr11:51034413-51034155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr11:52846612-52846353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 186

               
               
               Conread position:2-256
               
               
               Cow position:chr11:53428886-53429143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):124, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr11:54302674-54302416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr11:54728600-54728343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:201
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):35, 198

               
               
               Conread position:2-256
               
               
               Cow position:chr11:58049790-58050046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 191

               
               
               Conread position:2-256
               
               
               Cow position:chr11:58136854-58136596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr11:58139831-58139584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 172

               
               
               Conread position:2-256
               
               
               Cow position:chr11:59583567-59583309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr11:59871947-59871695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):124, 35

               
               
               Conread position:2-256
               
               
               Cow position:chr11:62792031-62791774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):124, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr11:63390345-63390600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 170

               
               
               Conread position:2-256
               
               
               Cow position:chr11:63478988-63478730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr11:63860507-63860764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 88

               
               
               Conread position:2-256
               
               
               Cow position:chr11:65282147-65281898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 173

               
               
               Conread position:2-256
               
               
               Cow position:chr11:66389874-66390128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 61

               
               
               Conread position:2-256
               
               
               Cow position:chr11:67295870-67296128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr11:70030556-70030300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:191
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):35, 187

               
               
               Conread position:2-256
               
               
               Cow position:chr11:72369191-72368932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr11:74990757-74990499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr11:75711116-75711374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr11:83001166-83000908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:198
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):35, 191

               
               
               Conread position:2-257
               
               
               Cow position:chr11:11315692-11315951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:197
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-257
               
               
               Cow position:chr11:38505094-38505352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-260
               
               
               Cow position:chr11:44893738-44893998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 255

               
               
               Conread position:2-265
               
               
               Cow position:chr11:26121783-26122049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 240

               
               
               Conread position:2-265
               
               
               Cow position:chr11:80591494-80591234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 125

               
               
               Conread position:2-270
               
               
               Cow position:chr11:5584308-5584573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):7, 89

               
               
               Conread position:2-270
               
               
               Cow position:chr11:28226641-28226916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-270
               
               
               Cow position:chr11:62009664-62009939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-270
               
               
               Cow position:chr11:73137731-73137454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 109

               
               
               Conread position:2-271
               
               
               Cow position:chr11:26067973-26068252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 262

               
               
               Conread position:2-275
               
               
               Cow position:chr11:61397484-61397764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-275
               
               
               Cow position:chr11:67920205-67920481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 61

               
               
               Conread position:3-189
               
               
               Cow position:chr11:21371945-21372133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:156
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:3-189
               
               
               Cow position:chr11:52298026-52298215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:3-190
               
               
               Cow position:chr11:66858852-66859041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:3-209
               
               
               Cow position:chr11:8246319-8246123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:157
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):34, 114

               
               
               Conread position:3-222
               
               
               Cow position:chr11:1626022-1626241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:168
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):34, 141

               
               
               Conread position:3-240
               
               
               Cow position:chr11:38235634-38235874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:186
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):34, 77

               
               
               Conread position:3-247
               
               
               Cow position:chr11:15995630-15995382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:189
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):32, 187

               
               
               Conread position:3-252
               
               
               Cow position:chr11:40458312-40458058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:3-256
               
               
               Cow position:chr11:1492724-1492969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:189
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):123, 76

               
               
               Conread position:3-256
               
               
               Cow position:chr11:4053216-4053458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):32, 95

               
               
               Conread position:3-256
               
               
               Cow position:chr11:4675497-4675736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:191
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):34, 60

               
               
               Conread position:3-256
               
               
               Cow position:chr11:8829649-8829890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:189
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):34, 87

               
               
               Conread position:3-256
               
               
               Cow position:chr11:17104566-17104811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):34, 157

               
               
               Conread position:3-256
               
               
               Cow position:chr11:17781895-17782148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):210, 86

               
               
               Conread position:3-256
               
               
               Cow position:chr11:18920461-18920707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:191
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):35, 124

               
               
               Conread position:3-256
               
               
               Cow position:chr11:21728885-21729141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:183
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):34, 88

               
               
               Conread position:3-256
               
               
               Cow position:chr11:21853115-21853372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 187

               
               
               Conread position:3-256
               
               
               Cow position:chr11:21896567-21896816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):34, 19

               
               
               Conread position:3-256
               
               
               Cow position:chr11:23494881-23494630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 46

               
               
               Conread position:3-256
               
               
               Cow position:chr11:25336275-25336018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 188

               
               
               Conread position:3-256
               
               
               Cow position:chr11:26482706-26482451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:3-256
               
               
               Cow position:chr11:28381803-28381550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):124, 39

               
               
               Conread position:3-256
               
               
               Cow position:chr11:30164706-30164451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 69

               
               
               Conread position:3-256
               
               
               Cow position:chr11:44106818-44106562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 191

               
               
               Conread position:3-256
               
               
               Cow position:chr11:59368899-59369156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:190
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):40, 187

               
               
               Conread position:3-256
               
               
               Cow position:chr11:67848836-67849101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:3-256
               
               
               Cow position:chr11:80789254-80789512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 188

               
               
               Conread position:3-256
               
               
               Cow position:chr11:81067875-81067628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:200
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):35, 66

               
               
               Conread position:3-256
               
               
               Cow position:chr11:83285017-83284772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:189
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):34, 109

               
               
               Conread position:3-256
               
               
               Cow position:chr11:84532130-84532382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):36, 167

               
               
               Conread position:3-256
               
               
               Cow position:chr11:85390726-85390971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:197
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):35, 125

               
               
               Conread position:3-256
               
               
               Cow position:chr11:87154874-87155124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 124

               
               
               Conread position:3-257
               
               
               Cow position:chr11:10094005-10093754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 87

               
               
               Conread position:3-258
               
               
               Cow position:chr11:38069434-38069174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:198
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):34, 71

               
               
               Conread position:3-265
               
               
               Cow position:chr11:74928932-74928674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:196
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):34, 92

               
               
               Conread position:3-268
               
               
               Cow position:chr11:16229516-16229779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 127

               
               
               Conread position:3-268
               
               
               Cow position:chr11:69403087-69403352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:193
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):34, 154

               
               
               Conread position:4-256
               
               
               Cow position:chr11:13087532-13087788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 186

               
               
               Conread position:4-272
               
               
               Cow position:chr11:33601504-33601773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:204
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):36, 183

               
               
               Conread position:8-253
               
               
               Cow position:chr11:12077273-12077524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 146

               
               
               Conread position:8-256
               
               
               Cow position:chr11:7152131-7151879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:187
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:8-263
               
               
               Cow position:chr11:39151730-39151469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:194
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:8-272
               
               
               Cow position:chr11:48167950-48168213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:202
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):29, 86

               
               
               Conread position:9-256
               
               
               Cow position:chr11:73798572-73798819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:189
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):118, 180

               
               
               Conread position:10-256
               
               
               Cow position:chr11:29662925-29663171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:190
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 183

               
               
               Conread position:10-256
               
               
               Cow position:chr11:63652548-63652796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:186
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:12-253
               
               
               Cow position:chr11:4206299-4206062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:185
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):25, 84

               
               
               Conread position:13-191
               
               
               Cow position:chr11:17891510-17891679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:13-253
               
               
               Cow position:chr11:26400607-26400366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:186
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):23, 65

               
               
               Conread position:13-256
               
               
               Cow position:chr11:59444420-59444667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 178

               
               
               Conread position:14-256
               
               
               Cow position:chr11:35241744-35241990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:189
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 173

               
               
               Conread position:14-265
               
               
               Cow position:chr11:49171368-49171627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:194
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):23, 250

               
               
               Conread position:15-249
               
               
               Cow position:chr11:31865757-31865519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:181
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):22, 37

               
               
               Conread position:15-253
               
               
               Cow position:chr11:18146426-18146664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:177
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):22, 142

               
               
               Conread position:15-256
               
               
               Cow position:chr11:21471749-21471506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):21, 147

               
               
               Conread position:15-256
               
               
               Cow position:chr11:50950074-50949827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:178
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):22, 81

               
               
               Conread position:15-271
               
               
               Cow position:chr11:56652118-56652372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 148

               
               
               Conread position:15-272
               
               
               Cow position:chr11:67744506-67744253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):22, 152

               
               
               Conread position:16-256
               
               
               Cow position:chr11:7120840-7121084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 174

               
               
               Conread position:17-256
               
               
               Cow position:chr11:67863163-67863398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:170
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):18, 35

               
               
               Conread position:18-168
               
               
               Cow position:chr11:37069131-37069278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):18, 29

               
               
               Conread position:18-256
               
               
               Cow position:chr11:84774286-84774044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:177
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):19, 41

               
               
               Conread position:18-271
               
               
               Cow position:chr11:260022-260286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):19, 217

               
               
               Conread position:19-250
               
               
               Cow position:chr11:3796351-3796120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:177
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):21, 55

               
               
               Conread position:22-210
               
               
               Cow position:chr11:53772790-53772613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):15, 59

               
               
               Conread position:22-253
               
               
               Cow position:chr11:40487265-40487038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:175
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):15, 30

               
               
               Conread position:22-256
               
               
               Cow position:chr11:38793694-38793466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):14, 35

               
               
               Conread position:22-256
               
               
               Cow position:chr11:43361603-43361840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:174
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:25-256
               
               
               Cow position:chr11:29614506-29614271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):15, 166

               
               
               Conread position:28-257
               
               
               Cow position:chr11:32477706-32477934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:172
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):99, 21

               
               
               Conread position:29-272
               
               
               Cow position:chr11:3999396-3999629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):8, 34

               
               
               Conread position:35-253
               
               
               Cow position:chr11:52463392-52463164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):73, 152

               
               
               Conread position:37-256
               
               
               Cow position:chr11:81316780-81316997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):94, 12

               
               
               Conread position:47-256
               
               
               Cow position:chr11:52128300-52128088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:165
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:51-257
               
               
               Cow position:chr11:31487311-31487111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:153
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:57-256
               
               
               Cow position:chr11:27938691-27938489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:150
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:59-256
               
               
               Cow position:chr11:77749143-77748945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:155
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):135, 76

               
               
               Conread position:62-272
               
               
               Cow position:chr11:2567607-2567821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):67, 130

               
               
               Conread position:73-252
               
               
               Cow position:chr11:65852092-65852275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):53, 118

               
               
               Conread position:74-170
               
               
               Cow position:chr11:72313534-72313437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:98
               
               
               Alignm identity:82
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:74-256
               
               
               Cow position:chr11:41177980-41177798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):138, 54

               
               
               Conread position:75-256
               
               
               Cow position:chr11:57185428-57185244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):52, 115

               
               
               Conread position:81-256
               
               
               Cow position:chr11:10043026-10043204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):46, 109

               
               
               Conread position:82-271
               
               
               Cow position:chr11:64353266-64353455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):45, 108

               
               
               Conread position:86-256
               
               
               Cow position:chr11:44516125-44516290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:126
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:89-243
               
               
               Cow position:chr11:40133774-40133931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:90-239
               
               
               Cow position:chr11:43913576-43913411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:94-265
               
               
               Cow position:chr11:18438991-18438819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):35, 133

               
               
               Conread position:95-256
               
               
               Cow position:chr11:23896563-23896399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:128
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):32, 94

               
               
               Conread position:102-256
               
               
               Cow position:chr11:8494538-8494381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:121
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):24, 88

               
               
               Conread position:1-253
               
               
               Cow position:chr12:15720145-15720397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:196
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):36, 120

               
               
               Conread position:1-256
               
               
               Cow position:chr12:6105933-6106186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 189

               
               
               Conread position:1-256
               
               
               Cow position:chr12:10359117-10358858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 189

               
               
               Conread position:1-256
               
               
               Cow position:chr12:18586094-18585835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 190

               
               
               Conread position:1-256
               
               
               Cow position:chr12:21075249-21074998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 89

               
               
               Conread position:1-256
               
               
               Cow position:chr12:25148197-25148455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 189

               
               
               Conread position:1-256
               
               
               Cow position:chr12:27929368-27929629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:198
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):21, 187

               
               
               Conread position:1-265
               
               
               Cow position:chr12:36445807-36445541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 69

               
               
               Conread position:1-272
               
               
               Cow position:chr12:3180830-3180552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 185

               
               
               Conread position:2-141
               
               
               Cow position:chr12:10490268-10490129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:120
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):124, 38

               
               
               Conread position:2-171
               
               
               Cow position:chr12:30016653-30016821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):124, 44

               
               
               Conread position:2-184
               
               
               Cow position:chr12:23441519-23441703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:148
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-186
               
               
               Cow position:chr12:21946409-21946231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):33, 82

               
               
               Conread position:2-187
               
               
               Cow position:chr12:5226654-5226467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:151
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:2-187
               
               
               Cow position:chr12:25838703-25838516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-189
               
               
               Cow position:chr12:23475171-23474984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:146
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):35, 118

               
               
               Conread position:2-190
               
               
               Cow position:chr12:6186729-6186916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:150
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):34, 128

               
               
               Conread position:2-210
               
               
               Cow position:chr12:14214481-14214275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:163
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-236
               
               
               Cow position:chr12:22480545-22480307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:185
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):35, 184

               
               
               Conread position:2-250
               
               
               Cow position:chr12:10931505-10931253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 193

               
               
               Conread position:2-250
               
               
               Cow position:chr12:11101668-11101416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 193

               
               
               Conread position:2-250
               
               
               Cow position:chr12:17718720-17718469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:191
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):35, 60

               
               
               Conread position:2-251
               
               
               Cow position:chr12:21611023-21610771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:182
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:2-251
               
               
               Cow position:chr12:31260989-31261250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-251
               
               
               Cow position:chr12:36213698-36213445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 188

               
               
               Conread position:2-253
               
               
               Cow position:chr12:21718752-21719012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:186
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):35, 113

               
               
               Conread position:2-253
               
               
               Cow position:chr12:22517434-22517687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 130

               
               
               Conread position:2-253
               
               
               Cow position:chr12:22979473-22979726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:193
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 193

               
               
               Conread position:2-253
               
               
               Cow position:chr12:25096845-25097100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 191

               
               
               Conread position:2-253
               
               
               Cow position:chr12:41337812-41338067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-253
               
               
               Cow position:chr12:42856111-42856366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 60

               
               
               Conread position:2-256
               
               
               Cow position:chr12:61787-62045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr12:259150-258892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr12:1056088-1056345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 149

               
               
               Conread position:2-256
               
               
               Cow position:chr12:1476242-1476499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:187
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):35, 50

               
               
               Conread position:2-256
               
               
               Cow position:chr12:1511344-1511601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 104

               
               
               Conread position:2-256
               
               
               Cow position:chr12:2228991-2228733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr12:3716853-3717111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 187

               
               
               Conread position:2-256
               
               
               Cow position:chr12:5107478-5107220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr12:5110644-5110898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 191

               
               
               Conread position:2-256
               
               
               Cow position:chr12:7674322-7674064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr12:8839674-8839416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr12:9988267-9988524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 99

               
               
               Conread position:2-256
               
               
               Cow position:chr12:10076078-10075824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:192
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 78

               
               
               Conread position:2-256
               
               
               Cow position:chr12:10164544-10164798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):35, 68

               
               
               Conread position:2-256
               
               
               Cow position:chr12:12754737-12754994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 82

               
               
               Conread position:2-256
               
               
               Cow position:chr12:12928490-12928744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:193
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr12:13042821-13043079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr12:14423770-14423512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr12:14568404-14568652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):35, 96

               
               
               Conread position:2-256
               
               
               Cow position:chr12:15925333-15925589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 215

               
               
               Conread position:2-256
               
               
               Cow position:chr12:16301918-16302176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr12:20459302-20459557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 115

               
               
               Conread position:2-256
               
               
               Cow position:chr12:20994347-20994602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 12

               
               
               Conread position:2-256
               
               
               Cow position:chr12:21212203-21211946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:196
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):125, 186

               
               
               Conread position:2-256
               
               
               Cow position:chr12:21452557-21452815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr12:21665556-21665298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr12:21888622-21888880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr12:21904777-21904529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 48

               
               
               Conread position:2-256
               
               
               Cow position:chr12:22748636-22748377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 191

               
               
               Conread position:2-256
               
               
               Cow position:chr12:23137908-23138166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr12:23294653-23294397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 19

               
               
               Conread position:2-256
               
               
               Cow position:chr12:24981128-24980884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:190
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):93, 52

               
               
               Conread position:2-256
               
               
               Cow position:chr12:25265913-25266171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr12:27506229-27506487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr12:27958105-27958363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:193
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr12:31027400-31027657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr12:31829029-31829287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr12:32011357-32011615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:197
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr12:32147209-32147467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 187

               
               
               Conread position:2-256
               
               
               Cow position:chr12:32339836-32340094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr12:32656969-32656711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr12:32758117-32757859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr12:33925277-33925535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 207

               
               
               Conread position:2-256
               
               
               Cow position:chr12:36287595-36287850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 154

               
               
               Conread position:2-256
               
               
               Cow position:chr12:37562424-37562169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:186
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):125, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr12:38893784-38893526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr12:43681425-43681167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr12:46111697-46111955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-257
               
               
               Cow position:chr12:1405867-1405610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:195
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):35, 92

               
               
               Conread position:2-265
               
               
               Cow position:chr12:1007436-1007170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:205
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):35, 15

               
               
               Conread position:2-265
               
               
               Cow position:chr12:24029062-24029325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 162

               
               
               Conread position:2-265
               
               
               Cow position:chr12:28012811-28013077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-265
               
               
               Cow position:chr12:28763595-28763858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:193
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):124, 88

               
               
               Conread position:2-265
               
               
               Cow position:chr12:31328909-31329176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:197
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):34, 258

               
               
               Conread position:2-272
               
               
               Cow position:chr12:249900-250175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 187

               
               
               Conread position:2-272
               
               
               Cow position:chr12:27435741-27436012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:193
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):129, 33

               
               
               Conread position:2-290
               
               
               Cow position:chr12:34176975-34176683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 186

               
               
               Conread position:3-256
               
               
               Cow position:chr12:11582579-11582332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 64

               
               
               Conread position:3-256
               
               
               Cow position:chr12:15939459-15939699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:183
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):34, 95

               
               
               Conread position:3-256
               
               
               Cow position:chr12:21057294-21057544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:188
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):34, 63

               
               
               Conread position:3-256
               
               
               Cow position:chr12:24205949-24205697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:197
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):33, 76

               
               
               Conread position:3-256
               
               
               Cow position:chr12:27994520-27994263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:3-256
               
               
               Cow position:chr12:28571795-28571546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):209, 54

               
               
               Conread position:3-256
               
               
               Cow position:chr12:33297049-33296795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 127

               
               
               Conread position:3-256
               
               
               Cow position:chr12:35547712-35547966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 21

               
               
               Conread position:3-256
               
               
               Cow position:chr12:42604764-42605013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:189
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):34, 186

               
               
               Conread position:3-259
               
               
               Cow position:chr12:26869837-26870097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 78

               
               
               Conread position:3-265
               
               
               Cow position:chr12:35311489-35311757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:204
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):40, 134

               
               
               Conread position:3-272
               
               
               Cow position:chr12:35367819-35367543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 118

               
               
               Conread position:4-187
               
               
               Cow position:chr12:1885921-1886106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:4-248
               
               
               Cow position:chr12:15821140-15820902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):33, 58

               
               
               Conread position:4-250
               
               
               Cow position:chr12:48416323-48416578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:191
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):32, 147

               
               
               Conread position:4-256
               
               
               Cow position:chr12:2242572-2242825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 24

               
               
               Conread position:4-256
               
               
               Cow position:chr12:39930583-39930331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:193
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):33, 117

               
               
               Conread position:8-256
               
               
               Cow position:chr12:2285684-2285438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:168
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):183, 0

               
               
               Conread position:8-256
               
               
               Cow position:chr12:21250900-21251151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:187
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:8-256
               
               
               Cow position:chr12:21314017-21314267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:193
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 82

               
               
               Conread position:8-265
               
               
               Cow position:chr12:8774078-8773820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 141

               
               
               Conread position:9-253
               
               
               Cow position:chr12:41973359-41973607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 151

               
               
               Conread position:9-256
               
               
               Cow position:chr12:15231444-15231197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:181
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):28, 54

               
               
               Conread position:9-256
               
               
               Cow position:chr12:30687155-30686904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 178

               
               
               Conread position:15-256
               
               
               Cow position:chr12:19871621-19871374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:15-256
               
               
               Cow position:chr12:23378536-23378294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:186
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):22, 199

               
               
               Conread position:15-256
               
               
               Cow position:chr12:25313306-25313551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:185
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):22, 179

               
               
               Conread position:16-256
               
               
               Cow position:chr12:23159105-23159339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:172
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:17-223
               
               
               Cow position:chr12:1108516-1108318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:162
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):20, 9

               
               
               Conread position:17-256
               
               
               Cow position:chr12:24557981-24557742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):20, 73

               
               
               Conread position:18-256
               
               
               Cow position:chr12:21862033-21862261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:180
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):19, 37

               
               
               Conread position:18-259
               
               
               Cow position:chr12:24447469-24447710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:181
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):19, 174

               
               
               Conread position:18-270
               
               
               Cow position:chr12:42795319-42795063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:180
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):19, 52

               
               
               Conread position:18-302
               
               
               Cow position:chr12:15797319-15797040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):19, 52

               
               
               Conread position:36-247
               
               
               Cow position:chr12:18936214-18936000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):91, 153

               
               
               Conread position:44-210
               
               
               Cow position:chr12:21672730-21672567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):83, 145

               
               
               Conread position:44-247
               
               
               Cow position:chr12:19496000-19496203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:145
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):107, 76

               
               
               Conread position:48-256
               
               
               Cow position:chr12:34176738-34176527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:126
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):79, 144

               
               
               Conread position:59-165
               
               
               Cow position:chr12:19862062-19861955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:108
               
               
               Alignm identity:89
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:65-252
               
               
               Cow position:chr12:42232666-42232476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:65-256
               
               
               Cow position:chr12:8674710-8674903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:148
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):61, 85

               
               
               Conread position:68-247
               
               
               Cow position:chr12:43601903-43602085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):59, 121

               
               
               Conread position:74-256
               
               
               Cow position:chr12:551471-551652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):135, 46

               
               
               Conread position:86-256
               
               
               Cow position:chr12:1438244-1438072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:100-256
               
               
               Cow position:chr12:19040936-19040776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:116
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:1-186
               
               
               Cow position:chr13:28171806-28171993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:149
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:1-256
               
               
               Cow position:chr13:5622498-5622743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:196
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):36, 62

               
               
               Conread position:1-256
               
               
               Cow position:chr13:9048814-9048549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:203
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):34, 192

               
               
               Conread position:1-256
               
               
               Cow position:chr13:13126500-13126761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 6

               
               
               Conread position:1-256
               
               
               Cow position:chr13:14399862-14400123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 191

               
               
               Conread position:1-256
               
               
               Cow position:chr13:31510357-31510098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 189

               
               
               Conread position:1-256
               
               
               Cow position:chr13:34345515-34345258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 189

               
               
               Conread position:1-256
               
               
               Cow position:chr13:50112679-50112420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:185
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:2-187
               
               
               Cow position:chr13:28449481-28449668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-210
               
               
               Cow position:chr13:6343094-6342888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:167
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-210
               
               
               Cow position:chr13:15525556-15525762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:163
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-210
               
               
               Cow position:chr13:48627759-48627557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:160
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):35, 46

               
               
               Conread position:2-237
               
               
               Cow position:chr13:24931608-24931845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:176
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):35, 191

               
               
               Conread position:2-239
               
               
               Cow position:chr13:32152574-32152812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:184
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 64

               
               
               Conread position:2-252
               
               
               Cow position:chr13:32081088-32080834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-253
               
               
               Cow position:chr13:561177-561429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:199
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):34, 16

               
               
               Conread position:2-253
               
               
               Cow position:chr13:2725595-2725850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-253
               
               
               Cow position:chr13:14302774-14303029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 184

               
               
               Conread position:2-253
               
               
               Cow position:chr13:32794131-32794384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 201

               
               
               Conread position:2-254
               
               
               Cow position:chr13:28131718-28131462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-255
               
               
               Cow position:chr13:28130811-28131066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:199
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr13:645146-644891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 174

               
               
               Conread position:2-256
               
               
               Cow position:chr13:838195-838453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr13:1590942-1591202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 190

               
               
               Conread position:2-256
               
               
               Cow position:chr13:3556623-3556366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:189
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):35, 96

               
               
               Conread position:2-256
               
               
               Cow position:chr13:3657138-3657396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:191
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr13:4487065-4486807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr13:4944603-4944344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr13:5331550-5331292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 191

               
               
               Conread position:2-256
               
               
               Cow position:chr13:5498589-5498848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr13:6664916-6665174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr13:6718952-6719210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr13:8782119-8781862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):124, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr13:9301369-9301124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:195
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):35, 84

               
               
               Conread position:2-256
               
               
               Cow position:chr13:11390470-11390212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr13:13332741-13333000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 190

               
               
               Conread position:2-256
               
               
               Cow position:chr13:13903068-13902810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr13:15280499-15280241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr13:18121659-18121916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 68

               
               
               Conread position:2-256
               
               
               Cow position:chr13:18329913-18330171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr13:22275999-22275734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):33, 47

               
               
               Conread position:2-256
               
               
               Cow position:chr13:26204247-26204505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr13:29055216-29055474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr13:30468906-30469164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr13:31990085-31989828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr13:32922101-32922356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:189
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):31, 192

               
               
               Conread position:2-256
               
               
               Cow position:chr13:33162153-33161895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr13:33333169-33333427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr13:33522744-33523004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 191

               
               
               Conread position:2-256
               
               
               Cow position:chr13:35540616-35540360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr13:38612430-38612178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 110

               
               
               Conread position:2-256
               
               
               Cow position:chr13:39911610-39911359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:197
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):125, 35

               
               
               Conread position:2-256
               
               
               Cow position:chr13:41337472-41337715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:189
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):35, 22

               
               
               Conread position:2-256
               
               
               Cow position:chr13:42086918-42087174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 193

               
               
               Conread position:2-256
               
               
               Cow position:chr13:42088270-42088514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:192
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):35, 80

               
               
               Conread position:2-256
               
               
               Cow position:chr13:43974741-43974997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 45

               
               
               Conread position:2-256
               
               
               Cow position:chr13:46056154-46055896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr13:49976882-49976624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr13:51298276-51298534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr13:53052048-53051790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr13:53157177-53157435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr13:55337949-55337697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 125

               
               
               Conread position:2-256
               
               
               Cow position:chr13:56692482-56692224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr13:58313544-58313286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr13:60465802-60466060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 191

               
               
               Conread position:2-256
               
               
               Cow position:chr13:60646374-60646632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr13:61954454-61954196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 170

               
               
               Conread position:2-257
               
               
               Cow position:chr13:2137966-2138225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:193
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-264
               
               
               Cow position:chr13:9537453-9537189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 184

               
               
               Conread position:2-265
               
               
               Cow position:chr13:681263-680997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-265
               
               
               Cow position:chr13:1461322-1461586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 88

               
               
               Conread position:2-265
               
               
               Cow position:chr13:21837085-21837351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-265
               
               
               Cow position:chr13:32733975-32734241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 187

               
               
               Conread position:2-265
               
               
               Cow position:chr13:50189860-50190125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-270
               
               
               Cow position:chr13:11795488-11795757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 119

               
               
               Conread position:2-270
               
               
               Cow position:chr13:36936943-36936670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-271
               
               
               Cow position:chr13:26822918-26823178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:204
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-271
               
               
               Cow position:chr13:52085088-52085355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:202
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):35, 167

               
               
               Conread position:2-272
               
               
               Cow position:chr13:35760754-35760478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 270

               
               
               Conread position:2-276
               
               
               Cow position:chr13:5229763-5230030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:203
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):32, 130

               
               
               Conread position:3-186
               
               
               Cow position:chr13:15446801-15446981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:159
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 114

               
               
               Conread position:3-186
               
               
               Cow position:chr13:16344936-16345120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):35, 72

               
               
               Conread position:3-187
               
               
               Cow position:chr13:34113047-34113228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:144
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):34, 24

               
               
               Conread position:3-187
               
               
               Cow position:chr13:47189227-47189042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):34, 94

               
               
               Conread position:3-210
               
               
               Cow position:chr13:30241776-30241571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:168
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 183

               
               
               Conread position:3-252
               
               
               Cow position:chr13:30652074-30652326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 187

               
               
               Conread position:3-253
               
               
               Cow position:chr13:20563777-20564024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 54

               
               
               Conread position:3-253
               
               
               Cow position:chr13:22715100-22714858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):123, 34

               
               
               Conread position:3-253
               
               
               Cow position:chr13:22774513-22774260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:190
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):28, 54

               
               
               Conread position:3-253
               
               
               Cow position:chr13:28700031-28699777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 185

               
               
               Conread position:3-256
               
               
               Cow position:chr13:3314834-3314581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 190

               
               
               Conread position:3-256
               
               
               Cow position:chr13:3784340-3784086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:186
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):28, 74

               
               
               Conread position:3-256
               
               
               Cow position:chr13:4663832-4663577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:186
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):34, 154

               
               
               Conread position:3-256
               
               
               Cow position:chr13:11826552-11826798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 71

               
               
               Conread position:3-256
               
               
               Cow position:chr13:12618328-12618077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:190
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):34, 47

               
               
               Conread position:3-256
               
               
               Cow position:chr13:19393913-19394168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 141

               
               
               Conread position:3-256
               
               
               Cow position:chr13:20571504-20571755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 37

               
               
               Conread position:3-256
               
               
               Cow position:chr13:32955249-32955507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 187

               
               
               Conread position:3-256
               
               
               Cow position:chr13:32982190-32982448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 187

               
               
               Conread position:3-256
               
               
               Cow position:chr13:34190454-34190201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):37, 59

               
               
               Conread position:3-256
               
               
               Cow position:chr13:42114791-42115039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:188
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):34, 45

               
               
               Conread position:3-256
               
               
               Cow position:chr13:47574361-47574611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 124

               
               
               Conread position:3-256
               
               
               Cow position:chr13:49805736-49805988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 59

               
               
               Conread position:3-256
               
               
               Cow position:chr13:60426241-60425982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:194
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):34, 239

               
               
               Conread position:3-271
               
               
               Cow position:chr13:54238237-54238501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:204
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):34, 70

               
               
               Conread position:3-272
               
               
               Cow position:chr13:9570803-9571072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 54

               
               
               Conread position:4-187
               
               
               Cow position:chr13:46736977-46737148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:145
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:4-256
               
               
               Cow position:chr13:3021275-3021531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 189

               
               
               Conread position:4-256
               
               
               Cow position:chr13:15921250-15921503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:192
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):33, 168

               
               
               Conread position:4-256
               
               
               Cow position:chr13:19102463-19102719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 187

               
               
               Conread position:6-249
               
               
               Cow position:chr13:39944702-39944468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:176
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):24, 79

               
               
               Conread position:8-253
               
               
               Cow position:chr13:34871166-34870917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:192
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):29, 186

               
               
               Conread position:8-256
               
               
               Cow position:chr13:17318172-17318422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:182
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:9-186
               
               
               Cow position:chr13:31580033-31579867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):117, 30

               
               
               Conread position:9-256
               
               
               Cow position:chr13:16807795-16807551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):28, 160

               
               
               Conread position:9-256
               
               
               Cow position:chr13:17277356-17277113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:185
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):26, 91

               
               
               Conread position:9-256
               
               
               Cow position:chr13:34376324-34376576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 134

               
               
               Conread position:9-256
               
               
               Cow position:chr13:58740774-58740529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:189
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):26, 54

               
               
               Conread position:10-180
               
               
               Cow position:chr13:32016971-32016805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):27, 88

               
               
               Conread position:10-256
               
               
               Cow position:chr13:18097418-18097668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:185
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):27, 209

               
               
               Conread position:10-256
               
               
               Cow position:chr13:46488688-46488927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:176
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):26, 130

               
               
               Conread position:12-256
               
               
               Cow position:chr13:34508626-34508868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):25, 54

               
               
               Conread position:14-174
               
               
               Cow position:chr13:49195147-49194987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):23, 83

               
               
               Conread position:15-256
               
               
               Cow position:chr13:2805083-2805328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:183
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:15-257
               
               
               Cow position:chr13:7609344-7609098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 87

               
               
               Conread position:15-265
               
               
               Cow position:chr13:52860037-52860289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 101

               
               
               Conread position:16-253
               
               
               Cow position:chr13:52251112-52250874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:173
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):20, 7

               
               
               Conread position:16-256
               
               
               Cow position:chr13:50079370-50079614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:185
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):21, 177

               
               
               Conread position:16-257
               
               
               Cow position:chr13:58718743-58718510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:177
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):21, 46

               
               
               Conread position:18-256
               
               
               Cow position:chr13:16248745-16248988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:18-256
               
               
               Cow position:chr13:34298776-34298534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:180
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:18-256
               
               
               Cow position:chr13:34905384-34905619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:189
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 104

               
               
               Conread position:19-250
               
               
               Cow position:chr13:20538350-20538584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:188
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 9

               
               
               Conread position:19-256
               
               
               Cow position:chr13:45933946-45933705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:190
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 172

               
               
               Conread position:21-265
               
               
               Cow position:chr13:34332879-34332632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):16, 238

               
               
               Conread position:22-256
               
               
               Cow position:chr13:38897511-38897268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):15, 174

               
               
               Conread position:25-256
               
               
               Cow position:chr13:31730382-31730617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:180
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):12, 168

               
               
               Conread position:26-256
               
               
               Cow position:chr13:504522-504288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:186
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 164

               
               
               Conread position:47-270
               
               
               Cow position:chr13:19566887-19566658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:176
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):80, 143

               
               
               Conread position:63-256
               
               
               Cow position:chr13:32549903-32549713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):63, 31

               
               
               Conread position:67-256
               
               
               Cow position:chr13:52459023-52459207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:144
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):129, 63

               
               
               Conread position:68-252
               
               
               Cow position:chr13:33351586-33351413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):144, 52

               
               
               Conread position:69-256
               
               
               Cow position:chr13:30243471-30243281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:153
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):57, 121

               
               
               Conread position:73-256
               
               
               Cow position:chr13:47301765-47301579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):54, 116

               
               
               Conread position:80-239
               
               
               Cow position:chr13:29721655-29721492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:122
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):19, 114

               
               
               Conread position:81-256
               
               
               Cow position:chr13:19811882-19812060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):46, 108

               
               
               Conread position:81-256
               
               
               Cow position:chr13:32253219-32253397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:140
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):46, 109

               
               
               Conread position:85-256
               
               
               Cow position:chr13:18987506-18987674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):127, 41

               
               
               Conread position:91-302
               
               
               Cow position:chr13:34762869-34763079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):36, 103

               
               
               Conread position:96-256
               
               
               Cow position:chr13:14411054-14411217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:97-256
               
               
               Cow position:chr13:28526195-28526356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:128
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):30, 89

               
               
               Conread position:106-256
               
               
               Cow position:chr13:8068095-8068248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):21, 84

               
               
               Conread position:112-256
               
               
               Cow position:chr13:33500838-33500985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):14, 89

               
               
               Conread position:112-272
               
               
               Cow position:chr13:34321879-34322045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:1-250
               
               
               Cow position:chr14:13581952-13581699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:193
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:1-253
               
               
               Cow position:chr14:29773044-29773302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:201
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):82, 6

               
               
               Conread position:1-256
               
               
               Cow position:chr14:2289330-2289077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:202
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):36, 77

               
               
               Conread position:1-256
               
               
               Cow position:chr14:9047915-9047662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:200
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):36, 67

               
               
               Conread position:1-256
               
               
               Cow position:chr14:35016444-35016183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):27, 192

               
               
               Conread position:1-270
               
               
               Cow position:chr14:13619363-13619632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 84

               
               
               Conread position:2-183
               
               
               Cow position:chr14:11474240-11474422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:141
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-186
               
               
               Cow position:chr14:21728105-21727919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:149
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:2-187
               
               
               Cow position:chr14:24895753-24895566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-187
               
               
               Cow position:chr14:38016632-38016445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:160
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:2-187
               
               
               Cow position:chr14:41211988-41212166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:145
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):57, 119

               
               
               Conread position:2-187
               
               
               Cow position:chr14:41717138-41717332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:2-190
               
               
               Cow position:chr14:14786235-14786424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:160
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 114

               
               
               Conread position:2-190
               
               
               Cow position:chr14:45996490-45996674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:140
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):38, 98

               
               
               Conread position:2-244
               
               
               Cow position:chr14:5501009-5500770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:192
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 55

               
               
               Conread position:2-247
               
               
               Cow position:chr14:26449442-26449687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):125, 46

               
               
               Conread position:2-248
               
               
               Cow position:chr14:34667768-34668017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 185

               
               
               Conread position:2-250
               
               
               Cow position:chr14:7475938-7475687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:194
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):35, 110

               
               
               Conread position:2-251
               
               
               Cow position:chr14:32500243-32500001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):125, 35

               
               
               Conread position:2-251
               
               
               Cow position:chr14:37444050-37443797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-252
               
               
               Cow position:chr14:15272183-15272434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:190
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 185

               
               
               Conread position:2-252
               
               
               Cow position:chr14:30581383-30581638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 99

               
               
               Conread position:2-253
               
               
               Cow position:chr14:10541810-10542062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:187
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):124, 24

               
               
               Conread position:2-253
               
               
               Cow position:chr14:13105023-13104768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-253
               
               
               Cow position:chr14:22026693-22026947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:192
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 158

               
               
               Conread position:2-253
               
               
               Cow position:chr14:41446092-41445832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 200

               
               
               Conread position:2-254
               
               
               Cow position:chr14:47873042-47873298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr14:193231-192974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:197
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):35, 184

               
               
               Conread position:2-256
               
               
               Cow position:chr14:1727227-1726970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 30

               
               
               Conread position:2-256
               
               
               Cow position:chr14:5645490-5645230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 190

               
               
               Conread position:2-256
               
               
               Cow position:chr14:8396698-8396956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr14:8925178-8924920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr14:9449450-9449709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr14:9811762-9811505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr14:10310641-10310383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr14:11150834-11151092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 191

               
               
               Conread position:2-256
               
               
               Cow position:chr14:11461998-11462256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 192

               
               
               Conread position:2-256
               
               
               Cow position:chr14:12066366-12066624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr14:12833932-12833674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 187

               
               
               Conread position:2-256
               
               
               Cow position:chr14:12903415-12903158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 49

               
               
               Conread position:2-256
               
               
               Cow position:chr14:13308813-13308556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:188
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr14:13370307-13370051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr14:13769214-13769467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:192
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 83

               
               
               Conread position:2-256
               
               
               Cow position:chr14:13860454-13860717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 193

               
               
               Conread position:2-256
               
               
               Cow position:chr14:14271439-14271181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 191

               
               
               Conread position:2-256
               
               
               Cow position:chr14:15336551-15336809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr14:17488257-17488515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:192
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr14:17690202-17689952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:194
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):35, 53

               
               
               Conread position:2-256
               
               
               Cow position:chr14:17762306-17762565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr14:19419176-19418918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 207

               
               
               Conread position:2-256
               
               
               Cow position:chr14:19524134-19523876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr14:22689813-22690071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr14:24797608-24797866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr14:24980629-24980371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 176

               
               
               Conread position:2-256
               
               
               Cow position:chr14:26129098-26129358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:196
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):35, 190

               
               
               Conread position:2-256
               
               
               Cow position:chr14:27040304-27040559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:200
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):35, 184

               
               
               Conread position:2-256
               
               
               Cow position:chr14:28212035-28211784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 172

               
               
               Conread position:2-256
               
               
               Cow position:chr14:28993266-28993524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 138

               
               
               Conread position:2-256
               
               
               Cow position:chr14:29044591-29044849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr14:31881807-31882064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 101

               
               
               Conread position:2-256
               
               
               Cow position:chr14:32450038-32449780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 184

               
               
               Conread position:2-256
               
               
               Cow position:chr14:32471819-32472076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:198
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):35, 162

               
               
               Conread position:2-256
               
               
               Cow position:chr14:34168380-34168123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr14:34629113-34629371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr14:34675180-34674924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr14:34763811-34763553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr14:34906607-34906349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr14:38047258-38047004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 119

               
               
               Conread position:2-256
               
               
               Cow position:chr14:38238014-38238272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr14:38436110-38435855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 22

               
               
               Conread position:2-256
               
               
               Cow position:chr14:38459073-38459329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr14:38651993-38651735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr14:40483380-40483638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr14:40969237-40968979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr14:41219966-41220224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr14:44026734-44026991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 175

               
               
               Conread position:2-256
               
               
               Cow position:chr14:44076604-44076861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:198
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):35, 163

               
               
               Conread position:2-256
               
               
               Cow position:chr14:44692231-44691989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):35, 119

               
               
               Conread position:2-256
               
               
               Cow position:chr14:45084994-45084739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 120

               
               
               Conread position:2-256
               
               
               Cow position:chr14:45739243-45739498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:191
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 76

               
               
               Conread position:2-256
               
               
               Cow position:chr14:46302987-46302728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr14:46636459-46636711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):34, 76

               
               
               Conread position:2-256
               
               
               Cow position:chr14:46848964-46849216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:193
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 182

               
               
               Conread position:2-256
               
               
               Cow position:chr14:46960469-46960211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr14:48572272-48572534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr14:49995463-49995719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr14:50137350-50137095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:191
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr14:50141942-50142199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 166

               
               
               Conread position:2-258
               
               
               Cow position:chr14:41081560-41081820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 254

               
               
               Conread position:2-265
               
               
               Cow position:chr14:12739967-12740233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-265
               
               
               Cow position:chr14:12858555-12858821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-265
               
               
               Cow position:chr14:20786464-20786200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):124, 38

               
               
               Conread position:2-265
               
               
               Cow position:chr14:21390300-21390546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):35, 89

               
               
               Conread position:2-265
               
               
               Cow position:chr14:30476262-30476525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 55

               
               
               Conread position:2-265
               
               
               Cow position:chr14:31289940-31289675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-265
               
               
               Cow position:chr14:44293699-44293437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 24

               
               
               Conread position:2-271
               
               
               Cow position:chr14:31155908-31155637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 187

               
               
               Conread position:2-272
               
               
               Cow position:chr14:35419949-35419676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 160

               
               
               Conread position:2-272
               
               
               Cow position:chr14:50069116-50069393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 189

               
               
               Conread position:3-187
               
               
               Cow position:chr14:18497060-18496880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:153
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):33, 124

               
               
               Conread position:3-188
               
               
               Cow position:chr14:105751-105568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):34, 101

               
               
               Conread position:3-233
               
               
               Cow position:chr14:45067041-45066814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):124, 87

               
               
               Conread position:3-239
               
               
               Cow position:chr14:34354630-34354391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:182
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):34, 55

               
               
               Conread position:3-245
               
               
               Cow position:chr14:44382359-44382114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 186

               
               
               Conread position:3-252
               
               
               Cow position:chr14:37883078-37882821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:194
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):34, 59

               
               
               Conread position:3-253
               
               
               Cow position:chr14:5532420-5532167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:194
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):123, 184

               
               
               Conread position:3-253
               
               
               Cow position:chr14:30662956-30663213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:186
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):34, 194

               
               
               Conread position:3-253
               
               
               Cow position:chr14:42626598-42626850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 63

               
               
               Conread position:3-253
               
               
               Cow position:chr14:44554921-44554673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:192
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 82

               
               
               Conread position:3-256
               
               
               Cow position:chr14:424261-424010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 60

               
               
               Conread position:3-256
               
               
               Cow position:chr14:9483032-9482775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 187

               
               
               Conread position:3-256
               
               
               Cow position:chr14:24922864-24922607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 102

               
               
               Conread position:3-256
               
               
               Cow position:chr14:28796506-28796753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:193
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):34, 118

               
               
               Conread position:3-256
               
               
               Cow position:chr14:30593193-30593439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):34, 11

               
               
               Conread position:3-256
               
               
               Cow position:chr14:33834929-33835186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:194
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):124, 153

               
               
               Conread position:3-256
               
               
               Cow position:chr14:35497600-35497343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 149

               
               
               Conread position:3-266
               
               
               Cow position:chr14:24990201-24990466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:181
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):135, 29

               
               
               Conread position:3-271
               
               
               Cow position:chr14:34394814-34394550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 157

               
               
               Conread position:3-276
               
               
               Cow position:chr14:23527913-23528191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):34, 206

               
               
               Conread position:4-183
               
               
               Cow position:chr14:23215280-23215102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):31, 126

               
               
               Conread position:4-253
               
               
               Cow position:chr14:48251374-48251621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:186
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):33, 123

               
               
               Conread position:4-256
               
               
               Cow position:chr14:28350618-28350874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:197
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):33, 190

               
               
               Conread position:4-256
               
               
               Cow position:chr14:45025549-45025805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 187

               
               
               Conread position:4-257
               
               
               Cow position:chr14:48495315-48495065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:195
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):33, 91

               
               
               Conread position:5-252
               
               
               Cow position:chr14:32583952-32584197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:185
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):187, 0

               
               
               Conread position:6-256
               
               
               Cow position:chr14:42259539-42259294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:171
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):31, 52

               
               
               Conread position:8-256
               
               
               Cow position:chr14:8884806-8885057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 178

               
               
               Conread position:8-256
               
               
               Cow position:chr14:19490055-19489805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:183
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):28, 151

               
               
               Conread position:8-256
               
               
               Cow position:chr14:44367753-44367501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:188
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:8-256
               
               
               Cow position:chr14:48828300-48828041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:8-302
               
               
               Cow position:chr14:16996962-16997267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 182

               
               
               Conread position:9-189
               
               
               Cow position:chr14:45299997-45299822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):19, 56

               
               
               Conread position:9-253
               
               
               Cow position:chr14:21200996-21200750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 178

               
               
               Conread position:9-256
               
               
               Cow position:chr14:40475647-40475890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 97

               
               
               Conread position:9-257
               
               
               Cow position:chr14:45848231-45847981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):28, 123

               
               
               Conread position:9-265
               
               
               Cow position:chr14:43561271-43561019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:190
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):27, 145

               
               
               Conread position:12-252
               
               
               Cow position:chr14:25683726-25683967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:186
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 203

               
               
               Conread position:13-256
               
               
               Cow position:chr14:23254267-23254514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:192
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):24, 178

               
               
               Conread position:14-256
               
               
               Cow position:chr14:16916657-16916903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 173

               
               
               Conread position:15-236
               
               
               Cow position:chr14:9876215-9876438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):23, 79

               
               
               Conread position:15-249
               
               
               Cow position:chr14:7647183-7646946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):23, 150

               
               
               Conread position:15-250
               
               
               Cow position:chr14:21540850-21541082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:178
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):22, 116

               
               
               Conread position:15-292
               
               
               Cow position:chr14:44584308-44584031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:186
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):22, 52

               
               
               Conread position:18-253
               
               
               Cow position:chr14:10820307-10820069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):19, 72

               
               
               Conread position:18-253
               
               
               Cow position:chr14:31400422-31400656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):19, 73

               
               
               Conread position:18-256
               
               
               Cow position:chr14:45583376-45583138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):19, 33

               
               
               Conread position:18-278
               
               
               Cow position:chr14:35382433-35382683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:206
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):19, 80

               
               
               Conread position:19-253
               
               
               Cow position:chr14:48491627-48491396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:184
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):24, 108

               
               
               Conread position:20-270
               
               
               Cow position:chr14:30664870-30665120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:193
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):17, 148

               
               
               Conread position:27-256
               
               
               Cow position:chr14:8998675-8998439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:182
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):10, 151

               
               
               Conread position:43-272
               
               
               Cow position:chr14:21596393-21596611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):149, 77

               
               
               Conread position:54-256
               
               
               Cow position:chr14:50145257-50145050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:165
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:57-256
               
               
               Cow position:chr14:17757022-17757216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):135, 63

               
               
               Conread position:60-256
               
               
               Cow position:chr14:8900250-8900452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):131, 60

               
               
               Conread position:64-256
               
               
               Cow position:chr14:748579-748774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:64-256
               
               
               Cow position:chr14:19550212-19550019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:65-256
               
               
               Cow position:chr14:13683584-13683390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):62, 125

               
               
               Conread position:74-256
               
               
               Cow position:chr14:36710054-36710237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:141
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):139, 90

               
               
               Conread position:78-256
               
               
               Cow position:chr14:50114371-50114191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):48, 15

               
               
               Conread position:82-256
               
               
               Cow position:chr14:44236646-44236471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:123
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):45, 106

               
               
               Conread position:83-256
               
               
               Cow position:chr14:36289298-36289120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:134
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:85-256
               
               
               Cow position:chr14:33550433-33550607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:86-256
               
               
               Cow position:chr14:37227170-37226997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):40, 102

               
               
               Conread position:86-273
               
               
               Cow position:chr14:21455728-21455540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:139
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):41, 171

               
               
               Conread position:92-253
               
               
               Cow position:chr14:45789962-45789798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):34, 95

               
               
               Conread position:1-253
               
               
               Cow position:chr15:13286019-13286275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:190
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):36, 58

               
               
               Conread position:1-256
               
               
               Cow position:chr15:18421-18167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 171

               
               
               Conread position:1-256
               
               
               Cow position:chr15:442702-442959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 35

               
               
               Conread position:1-256
               
               
               Cow position:chr15:6120466-6120205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:1-256
               
               
               Cow position:chr15:17193476-17193735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:1-256
               
               
               Cow position:chr15:17267602-17267342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:1-256
               
               
               Cow position:chr15:26158103-26157838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):36, 165

               
               
               Conread position:1-265
               
               
               Cow position:chr15:7962955-7963215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:196
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):7, 17

               
               
               Conread position:1-271
               
               
               Cow position:chr15:4629159-4629430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 192

               
               
               Conread position:2-171
               
               
               Cow position:chr15:11596296-11596467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-183
               
               
               Cow position:chr15:24568967-24569150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-185
               
               
               Cow position:chr15:17773263-17773448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:148
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-185
               
               
               Cow position:chr15:20944457-20944272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-208
               
               
               Cow position:chr15:31768464-31768667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:167
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):35, 144

               
               
               Conread position:2-224
               
               
               Cow position:chr15:20647250-20647030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:173
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-237
               
               
               Cow position:chr15:50142345-50142106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:188
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-238
               
               
               Cow position:chr15:35825-35591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:176
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):34, 61

               
               
               Conread position:2-238
               
               
               Cow position:chr15:7271425-7271184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:182
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-246
               
               
               Cow position:chr15:20404597-20404838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:187
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-248
               
               
               Cow position:chr15:4821985-4822233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:186
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-250
               
               
               Cow position:chr15:8753946-8753695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:181
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):35, 24

               
               
               Conread position:2-252
               
               
               Cow position:chr15:4712993-4712739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 184

               
               
               Conread position:2-252
               
               
               Cow position:chr15:6464151-6463905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:193
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):124, 32

               
               
               Conread position:2-252
               
               
               Cow position:chr15:9522113-9522368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 184

               
               
               Conread position:2-252
               
               
               Cow position:chr15:18264675-18264930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-252
               
               
               Cow position:chr15:25165018-25165272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-253
               
               
               Cow position:chr15:2080417-2080162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-253
               
               
               Cow position:chr15:6805799-6805543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 192

               
               
               Conread position:2-253
               
               
               Cow position:chr15:13388263-13388516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:194
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):35, 7

               
               
               Conread position:2-253
               
               
               Cow position:chr15:17074276-17074532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 189

               
               
               Conread position:2-253
               
               
               Cow position:chr15:44073531-44073278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 130

               
               
               Conread position:2-253
               
               
               Cow position:chr15:45944609-45944865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 190

               
               
               Conread position:2-256
               
               
               Cow position:chr15:67480-67731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:188
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):35, 125

               
               
               Conread position:2-256
               
               
               Cow position:chr15:312713-312973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:195
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):35, 191

               
               
               Conread position:2-256
               
               
               Cow position:chr15:481665-481412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:194
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):35, 119

               
               
               Conread position:2-256
               
               
               Cow position:chr15:561812-561557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 184

               
               
               Conread position:2-256
               
               
               Cow position:chr15:678147-677889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr15:1774531-1774276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:193
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):35, 88

               
               
               Conread position:2-256
               
               
               Cow position:chr15:2664472-2664216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:194
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):35, 66

               
               
               Conread position:2-256
               
               
               Cow position:chr15:3007753-3008010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 178

               
               
               Conread position:2-256
               
               
               Cow position:chr15:3257429-3257677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:192
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):35, 76

               
               
               Conread position:2-256
               
               
               Cow position:chr15:4082087-4081829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:197
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr15:4122869-4122612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr15:4139822-4140081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 191

               
               
               Conread position:2-256
               
               
               Cow position:chr15:4214246-4213997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):35, 125

               
               
               Conread position:2-256
               
               
               Cow position:chr15:4642286-4642031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 185

               
               
               Conread position:2-256
               
               
               Cow position:chr15:4689119-4688861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 238

               
               
               Conread position:2-256
               
               
               Cow position:chr15:5198041-5197783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 187

               
               
               Conread position:2-256
               
               
               Cow position:chr15:5640505-5640763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr15:6152558-6152816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr15:6164018-6164265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 191

               
               
               Conread position:2-256
               
               
               Cow position:chr15:6550528-6550786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 187

               
               
               Conread position:2-256
               
               
               Cow position:chr15:6563978-6563721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):35, 114

               
               
               Conread position:2-256
               
               
               Cow position:chr15:6616884-6616626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:188
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr15:6758391-6758649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr15:7267687-7267429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr15:7319651-7319394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr15:7566089-7565831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr15:7586700-7586953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):43, 167

               
               
               Conread position:2-256
               
               
               Cow position:chr15:7985341-7985599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr15:9910016-9910273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 154

               
               
               Conread position:2-256
               
               
               Cow position:chr15:12417629-12417882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:190
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 95

               
               
               Conread position:2-256
               
               
               Cow position:chr15:12859227-12858969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:197
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):35, 187

               
               
               Conread position:2-256
               
               
               Cow position:chr15:13430906-13430652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr15:13545984-13546224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:183
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):156, 77

               
               
               Conread position:2-256
               
               
               Cow position:chr15:13683420-13683171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 60

               
               
               Conread position:2-256
               
               
               Cow position:chr15:15344022-15344275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:191
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 73

               
               
               Conread position:2-256
               
               
               Cow position:chr15:16784406-16784154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:193
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):35, 96

               
               
               Conread position:2-256
               
               
               Cow position:chr15:16801360-16801102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr15:17034548-17034799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):35, 95

               
               
               Conread position:2-256
               
               
               Cow position:chr15:17700273-17700013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr15:18579808-18579554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:189
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):35, 187

               
               
               Conread position:2-256
               
               
               Cow position:chr15:18661572-18661315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 60

               
               
               Conread position:2-256
               
               
               Cow position:chr15:19734713-19734971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr15:20413660-20413403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr15:21152735-21152993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr15:21533051-21533309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr15:21607860-21607603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 247

               
               
               Conread position:2-256
               
               
               Cow position:chr15:21637358-21637099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 191

               
               
               Conread position:2-256
               
               
               Cow position:chr15:21644741-21644993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:199
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):35, 96

               
               
               Conread position:2-256
               
               
               Cow position:chr15:21806935-21806677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 191

               
               
               Conread position:2-256
               
               
               Cow position:chr15:21825951-21825693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:187
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr15:21939937-21940195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr15:22539753-22540009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr15:22759918-22760176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr15:23666408-23666666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr15:25069408-25069666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr15:26591261-26591518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 187

               
               
               Conread position:2-256
               
               
               Cow position:chr15:27747434-27747692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 184

               
               
               Conread position:2-256
               
               
               Cow position:chr15:31269788-31270043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:188
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):125, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr15:31357513-31357770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:195
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):35, 20

               
               
               Conread position:2-256
               
               
               Cow position:chr15:32065203-32065461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr15:32490804-32491060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr15:32701652-32701903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):35, 98

               
               
               Conread position:2-256
               
               
               Cow position:chr15:32714786-32714531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 16

               
               
               Conread position:2-256
               
               
               Cow position:chr15:33753196-33753452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr15:34064039-34063784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:191
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 19

               
               
               Conread position:2-256
               
               
               Cow position:chr15:35750211-35750468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 95

               
               
               Conread position:2-256
               
               
               Cow position:chr15:35838188-35837943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:176
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):35, 56

               
               
               Conread position:2-256
               
               
               Cow position:chr15:36940297-36940554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:193
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):35, 147

               
               
               Conread position:2-256
               
               
               Cow position:chr15:37394801-37394555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:192
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):35, 56

               
               
               Conread position:2-256
               
               
               Cow position:chr15:42533136-42532878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr15:42597166-42597424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr15:42939996-42939739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 24

               
               
               Conread position:2-256
               
               
               Cow position:chr15:48556805-48556547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:197
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):35, 172

               
               
               Conread position:2-256
               
               
               Cow position:chr15:50151785-50151528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:191
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr15:50308386-50308637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:190
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):31, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr15:51220829-51220570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 99

               
               
               Conread position:2-257
               
               
               Cow position:chr15:7578247-7577993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:198
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):42, 148

               
               
               Conread position:2-257
               
               
               Cow position:chr15:12442611-12442352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 191

               
               
               Conread position:2-257
               
               
               Cow position:chr15:25133048-25132784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 155

               
               
               Conread position:2-260
               
               
               Cow position:chr15:17399057-17398795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-265
               
               
               Cow position:chr15:2015556-2015294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 60

               
               
               Conread position:2-265
               
               
               Cow position:chr15:2899172-2899438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 187

               
               
               Conread position:2-265
               
               
               Cow position:chr15:3892671-3892406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 93

               
               
               Conread position:2-265
               
               
               Cow position:chr15:4388833-4388567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 257

               
               
               Conread position:2-265
               
               
               Cow position:chr15:4769590-4769324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 257

               
               
               Conread position:2-265
               
               
               Cow position:chr15:4925235-4924978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):35, 112

               
               
               Conread position:2-270
               
               
               Cow position:chr15:29222-29496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-270
               
               
               Cow position:chr15:18214648-18214383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:197
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):35, 144

               
               
               Conread position:2-270
               
               
               Cow position:chr15:20172910-20173178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:207
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):35, 111

               
               
               Conread position:2-271
               
               
               Cow position:chr15:26388883-26389154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 55

               
               
               Conread position:2-302
               
               
               Cow position:chr15:4787715-4788023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 130

               
               
               Conread position:3-186
               
               
               Cow position:chr15:33455446-33455269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:156
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):123, 34

               
               
               Conread position:3-187
               
               
               Cow position:chr15:22095984-22096168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:151
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):34, 49

               
               
               Conread position:3-189
               
               
               Cow position:chr15:29811660-29811847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:145
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):32, 141

               
               
               Conread position:3-218
               
               
               Cow position:chr15:49306879-49306666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):35, 59

               
               
               Conread position:3-249
               
               
               Cow position:chr15:1601651-1601401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 86

               
               
               Conread position:3-250
               
               
               Cow position:chr15:4953406-4953161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:179
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):48, 70

               
               
               Conread position:3-251
               
               
               Cow position:chr15:47201490-47201736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 124

               
               
               Conread position:3-256
               
               
               Cow position:chr15:336765-336513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:181
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):35, 151

               
               
               Conread position:3-256
               
               
               Cow position:chr15:1776246-1775989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 189

               
               
               Conread position:3-256
               
               
               Cow position:chr15:2533816-2533559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 188

               
               
               Conread position:3-256
               
               
               Cow position:chr15:2560504-2560247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:3-256
               
               
               Cow position:chr15:2806187-2806426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):36, 55

               
               
               Conread position:3-256
               
               
               Cow position:chr15:6648331-6648582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:192
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):34, 93

               
               
               Conread position:3-256
               
               
               Cow position:chr15:8629391-8629136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):34, 72

               
               
               Conread position:3-256
               
               
               Cow position:chr15:10243201-10242957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:198
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):120, 33

               
               
               Conread position:3-256
               
               
               Cow position:chr15:17681204-17681458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:169
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):177, 71

               
               
               Conread position:3-256
               
               
               Cow position:chr15:32689844-32690098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:194
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):33, 129

               
               
               Conread position:3-256
               
               
               Cow position:chr15:33304713-33304958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:192
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):188, 96

               
               
               Conread position:3-256
               
               
               Cow position:chr15:35643376-35643623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:191
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):123, 37

               
               
               Conread position:3-256
               
               
               Cow position:chr15:37382504-37382761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:3-265
               
               
               Cow position:chr15:2644263-2644526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:196
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):124, 62

               
               
               Conread position:3-270
               
               
               Cow position:chr15:2632623-2632897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):37, 98

               
               
               Conread position:3-272
               
               
               Cow position:chr15:7941502-7941229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 188

               
               
               Conread position:3-276
               
               
               Cow position:chr15:20348183-20348454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 143

               
               
               Conread position:3-283
               
               
               Cow position:chr15:6331201-6330921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):32, 59

               
               
               Conread position:4-187
               
               
               Cow position:chr15:7574894-7574700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:4-253
               
               
               Cow position:chr15:13076603-13076351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:193
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 163

               
               
               Conread position:4-256
               
               
               Cow position:chr15:1785850-1785594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 186

               
               
               Conread position:4-256
               
               
               Cow position:chr15:3721056-3721305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:186
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):33, 123

               
               
               Conread position:4-256
               
               
               Cow position:chr15:4815630-4815387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):33, 63

               
               
               Conread position:4-256
               
               
               Cow position:chr15:8102528-8102279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:189
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):33, 58

               
               
               Conread position:4-256
               
               
               Cow position:chr15:32717533-32717783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):100, 29

               
               
               Conread position:4-256
               
               
               Cow position:chr15:36329376-36329632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 187

               
               
               Conread position:5-253
               
               
               Cow position:chr15:363894-364139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 77

               
               
               Conread position:5-256
               
               
               Cow position:chr15:6658030-6658287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:191
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:5-274
               
               
               Cow position:chr15:25554222-25553953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 56

               
               
               Conread position:6-256
               
               
               Cow position:chr15:28487047-28487301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:191
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:8-253
               
               
               Cow position:chr15:37373047-37373293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 194

               
               
               Conread position:8-256
               
               
               Cow position:chr15:5197430-5197178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 178

               
               
               Conread position:8-265
               
               
               Cow position:chr15:44550-44293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:198
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):28, 92

               
               
               Conread position:9-252
               
               
               Cow position:chr15:22855477-22855724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:187
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):7, 157

               
               
               Conread position:9-253
               
               
               Cow position:chr15:21831017-21830772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 142

               
               
               Conread position:9-256
               
               
               Cow position:chr15:5498133-5497887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 54

               
               
               Conread position:9-256
               
               
               Cow position:chr15:5983707-5983455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:185
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:9-256
               
               
               Cow position:chr15:14573241-14573479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):120, 49

               
               
               Conread position:9-256
               
               
               Cow position:chr15:25463445-25463696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 181

               
               
               Conread position:9-275
               
               
               Cow position:chr15:33700583-33700309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):136, 28

               
               
               Conread position:9-276
               
               
               Cow position:chr15:51910460-51910727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:192
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):130, 23

               
               
               Conread position:10-256
               
               
               Cow position:chr15:609039-609291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 57

               
               
               Conread position:12-256
               
               
               Cow position:chr15:4218841-4219086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:184
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):114, 48

               
               
               Conread position:12-256
               
               
               Cow position:chr15:33527493-33527731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:187
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):114, 27

               
               
               Conread position:13-187
               
               
               Cow position:chr15:53342086-53341909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:13-256
               
               
               Cow position:chr15:6081768-6081530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:183
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):24, 50

               
               
               Conread position:14-256
               
               
               Cow position:chr15:21662667-21662914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 179

               
               
               Conread position:14-256
               
               
               Cow position:chr15:38937840-38937596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:187
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 80

               
               
               Conread position:14-264
               
               
               Cow position:chr15:43267176-43266928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 36

               
               
               Conread position:15-253
               
               
               Cow position:chr15:50344663-50344899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 112

               
               
               Conread position:15-256
               
               
               Cow position:chr15:4674406-4674161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:187
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:15-256
               
               
               Cow position:chr15:11574944-11575183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):22, 52

               
               
               Conread position:15-256
               
               
               Cow position:chr15:36619082-36619324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:182
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):21, 98

               
               
               Conread position:15-265
               
               
               Cow position:chr15:23173006-23173249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:173
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):22, 55

               
               
               Conread position:15-266
               
               
               Cow position:chr15:14321242-14321004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):21, 53

               
               
               Conread position:15-270
               
               
               Cow position:chr15:16741130-16740870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:188
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):22, 130

               
               
               Conread position:16-252
               
               
               Cow position:chr15:10477057-10477293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):21, 100

               
               
               Conread position:17-253
               
               
               Cow position:chr15:45244667-45244430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:191
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):20, 104

               
               
               Conread position:17-256
               
               
               Cow position:chr15:4859883-4860121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:176
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):20, 151

               
               
               Conread position:17-256
               
               
               Cow position:chr15:29273176-29273414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:184
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):20, 125

               
               
               Conread position:18-256
               
               
               Cow position:chr15:22162200-22162428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:163
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):19, 41

               
               
               Conread position:18-256
               
               
               Cow position:chr15:37632073-37631834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):19, 168

               
               
               Conread position:18-257
               
               
               Cow position:chr15:1298586-1298826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:182
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):18, 112

               
               
               Conread position:19-253
               
               
               Cow position:chr15:4077064-4077298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:180
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):17, 168

               
               
               Conread position:21-256
               
               
               Cow position:chr15:36622603-36622834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:184
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):105, 15

               
               
               Conread position:26-253
               
               
               Cow position:chr15:44378579-44378352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:176
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):11, 103

               
               
               Conread position:27-248
               
               
               Cow position:chr15:25436015-25436238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:172
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):10, 105

               
               
               Conread position:27-256
               
               
               Cow position:chr15:29884253-29884483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:175
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):10, 162

               
               
               Conread position:33-256
               
               
               Cow position:chr15:2952100-2952320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):165, 18

               
               
               Conread position:34-256
               
               
               Cow position:chr15:3152519-3152738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):92, 9

               
               
               Conread position:37-256
               
               
               Cow position:chr15:31585348-31585570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:170
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):90, 155

               
               
               Conread position:44-256
               
               
               Cow position:chr15:24090871-24090656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:163
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):83, 146

               
               
               Conread position:46-256
               
               
               Cow position:chr15:4654509-4654296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:170
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):80, 148

               
               
               Conread position:46-256
               
               
               Cow position:chr15:30984610-30984399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:157
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):80, 97

               
               
               Conread position:46-256
               
               
               Cow position:chr15:38983702-38983489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:161
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):80, 170

               
               
               Conread position:50-256
               
               
               Cow position:chr15:32647394-32647188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):11, 25

               
               
               Conread position:51-259
               
               
               Cow position:chr15:12439777-12439572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:158
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):122, 69

               
               
               Conread position:59-256
               
               
               Cow position:chr15:18230093-18229893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):70, 131

               
               
               Conread position:59-265
               
               
               Cow position:chr15:4728192-4727984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):67, 199

               
               
               Conread position:63-256
               
               
               Cow position:chr15:2897977-2898169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):149, 57

               
               
               Conread position:65-256
               
               
               Cow position:chr15:7547889-7547696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):61, 175

               
               
               Conread position:65-256
               
               
               Cow position:chr15:49242293-49242488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):17, 125

               
               
               Conread position:76-256
               
               
               Cow position:chr15:6762085-6762268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):51, 114

               
               
               Conread position:86-256
               
               
               Cow position:chr15:42943611-42943778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):126, 34

               
               
               Conread position:98-256
               
               
               Cow position:chr15:26079471-26079632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):29, 92

               
               
               Conread position:1-248
               
               
               Cow position:chr16:2408153-2408406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:196
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):36, 191

               
               
               Conread position:1-250
               
               
               Cow position:chr16:14662369-14662622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:1-256
               
               
               Cow position:chr16:41273-41014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 184

               
               
               Conread position:1-256
               
               
               Cow position:chr16:4756749-4756505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:200
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):126, 65

               
               
               Conread position:1-256
               
               
               Cow position:chr16:8813366-8813623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 162

               
               
               Conread position:1-272
               
               
               Cow position:chr16:3349744-3349470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 12

               
               
               Conread position:2-183
               
               
               Cow position:chr16:51640985-51640804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:143
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):35, 89

               
               
               Conread position:2-186
               
               
               Cow position:chr16:32118317-32118131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:148
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-187
               
               
               Cow position:chr16:23772937-23773124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:152
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-187
               
               
               Cow position:chr16:42745746-42745921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):35, 96

               
               
               Conread position:2-187
               
               
               Cow position:chr16:46385810-46385988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):35, 87

               
               
               Conread position:2-210
               
               
               Cow position:chr16:5350770-5350976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:165
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):35, 184

               
               
               Conread position:2-210
               
               
               Cow position:chr16:29539073-29539275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):33, 119

               
               
               Conread position:2-250
               
               
               Cow position:chr16:31585964-31586214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 104

               
               
               Conread position:2-251
               
               
               Cow position:chr16:658688-658445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):35, 64

               
               
               Conread position:2-251
               
               
               Cow position:chr16:14351946-14352197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 184

               
               
               Conread position:2-252
               
               
               Cow position:chr16:4426828-4426575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 190

               
               
               Conread position:2-252
               
               
               Cow position:chr16:24636776-24637030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-253
               
               
               Cow position:chr16:701997-701744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 63

               
               
               Conread position:2-253
               
               
               Cow position:chr16:1734477-1734221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-253
               
               
               Cow position:chr16:2480417-2480666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 90

               
               
               Conread position:2-253
               
               
               Cow position:chr16:14040163-14039908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 188

               
               
               Conread position:2-253
               
               
               Cow position:chr16:16680857-16681112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr16:193200-193455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 83

               
               
               Conread position:2-256
               
               
               Cow position:chr16:417633-417375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr16:1563650-1563908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr16:2960417-2960159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr16:3769270-3769531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:200
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):35, 187

               
               
               Conread position:2-256
               
               
               Cow position:chr16:4343168-4343425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:189
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):35, 168

               
               
               Conread position:2-256
               
               
               Cow position:chr16:4722217-4721964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:190
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):35, 210

               
               
               Conread position:2-256
               
               
               Cow position:chr16:5435563-5435305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 185

               
               
               Conread position:2-256
               
               
               Cow position:chr16:5488609-5488351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr16:5525361-5525624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr16:5665839-5665581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 192

               
               
               Conread position:2-256
               
               
               Cow position:chr16:6677459-6677201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:197
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr16:7303494-7303236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr16:7385503-7385245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:191
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr16:7673724-7673981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 16

               
               
               Conread position:2-256
               
               
               Cow position:chr16:10372698-10372954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 130

               
               
               Conread position:2-256
               
               
               Cow position:chr16:10440977-10440719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr16:11633106-11633364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 184

               
               
               Conread position:2-256
               
               
               Cow position:chr16:12160545-12160800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 184

               
               
               Conread position:2-256
               
               
               Cow position:chr16:12485562-12485820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr16:13721851-13722109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 187

               
               
               Conread position:2-256
               
               
               Cow position:chr16:15187802-15187548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 191

               
               
               Conread position:2-256
               
               
               Cow position:chr16:15312019-15311763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr16:15485525-15485271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:188
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):35, 11

               
               
               Conread position:2-256
               
               
               Cow position:chr16:15570508-15570249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 184

               
               
               Conread position:2-256
               
               
               Cow position:chr16:15812820-15812548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:200
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):35, 20

               
               
               Conread position:2-256
               
               
               Cow position:chr16:15979640-15979898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 184

               
               
               Conread position:2-256
               
               
               Cow position:chr16:16150010-16150268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr16:16540144-16539889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 61

               
               
               Conread position:2-256
               
               
               Cow position:chr16:18212457-18212715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr16:18975606-18975348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr16:19081784-19081532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:196
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):125, 35

               
               
               Conread position:2-256
               
               
               Cow position:chr16:20278578-20278320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr16:20378183-20377933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 125

               
               
               Conread position:2-256
               
               
               Cow position:chr16:21018297-21018039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 192

               
               
               Conread position:2-256
               
               
               Cow position:chr16:21189996-21189738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr16:22798966-22799224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr16:23533262-23533519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 88

               
               
               Conread position:2-256
               
               
               Cow position:chr16:23711549-23711807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr16:23986051-23985793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr16:24209660-24209918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr16:24240662-24240920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 187

               
               
               Conread position:2-256
               
               
               Cow position:chr16:24407650-24407390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 190

               
               
               Conread position:2-256
               
               
               Cow position:chr16:24987766-24988024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr16:25075331-25075073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr16:25344717-25344458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 186

               
               
               Conread position:2-256
               
               
               Cow position:chr16:25444614-25444357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 187

               
               
               Conread position:2-256
               
               
               Cow position:chr16:25880054-25879796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 207

               
               
               Conread position:2-256
               
               
               Cow position:chr16:26627490-26627232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr16:26666442-26666184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr16:26990202-26990460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr16:27730643-27730901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr16:28193563-28193820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 78

               
               
               Conread position:2-256
               
               
               Cow position:chr16:28206373-28206631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr16:28468385-28468643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr16:29050383-29050124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 191

               
               
               Conread position:2-256
               
               
               Cow position:chr16:36247207-36246953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):208, 187

               
               
               Conread position:2-256
               
               
               Cow position:chr16:37053776-37053518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:194
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr16:37445966-37446218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:191
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):35, 103

               
               
               Conread position:2-256
               
               
               Cow position:chr16:40293432-40293690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 176

               
               
               Conread position:2-256
               
               
               Cow position:chr16:40879330-40879072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr16:41164036-41164291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):35, 184

               
               
               Conread position:2-256
               
               
               Cow position:chr16:41515872-41515612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 113

               
               
               Conread position:2-256
               
               
               Cow position:chr16:42211234-42210976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr16:43894523-43894782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:191
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr16:46101881-46102137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 173

               
               
               Conread position:2-256
               
               
               Cow position:chr16:46555160-46554902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 187

               
               
               Conread position:2-256
               
               
               Cow position:chr16:47404118-47403862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 193

               
               
               Conread position:2-256
               
               
               Cow position:chr16:48411373-48411115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:192
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr16:49780212-49780470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr16:51087521-51087264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 191

               
               
               Conread position:2-256
               
               
               Cow position:chr16:52526969-52526713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr16:53612539-53612283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:185
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):36, 82

               
               
               Conread position:2-256
               
               
               Cow position:chr16:54179626-54179884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:187
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr16:54322685-54322938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 181

               
               
               Conread position:2-265
               
               
               Cow position:chr16:15495191-15494930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 60

               
               
               Conread position:2-265
               
               
               Cow position:chr16:23249217-23249483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 257

               
               
               Conread position:2-272
               
               
               Cow position:chr16:3148301-3148575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 170

               
               
               Conread position:2-275
               
               
               Cow position:chr16:13422186-13422465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:207
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):35, 88

               
               
               Conread position:3-164
               
               
               Cow position:chr16:39457122-39456963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:138
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):33, 60

               
               
               Conread position:3-184
               
               
               Cow position:chr16:15179417-15179245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):34, 47

               
               
               Conread position:3-187
               
               
               Cow position:chr16:15369728-15369547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:156
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):32, 125

               
               
               Conread position:3-189
               
               
               Cow position:chr16:48341472-48341658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):33, 87

               
               
               Conread position:3-208
               
               
               Cow position:chr16:7541219-7541018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:168
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 118

               
               
               Conread position:3-210
               
               
               Cow position:chr16:44676091-44675885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:165
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):34, 191

               
               
               Conread position:3-231
               
               
               Cow position:chr16:15409348-15409584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:190
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 196

               
               
               Conread position:3-232
               
               
               Cow position:chr16:9786052-9785812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:184
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):32, 140

               
               
               Conread position:3-248
               
               
               Cow position:chr16:24445180-24444929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:185
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:3-250
               
               
               Cow position:chr16:53509794-53510038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:190
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):34, 20

               
               
               Conread position:3-253
               
               
               Cow position:chr16:600157-599908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 126

               
               
               Conread position:3-253
               
               
               Cow position:chr16:42074161-42074416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 189

               
               
               Conread position:3-253
               
               
               Cow position:chr16:49253515-49253759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 70

               
               
               Conread position:3-256
               
               
               Cow position:chr16:1957990-1958242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 190

               
               
               Conread position:3-256
               
               
               Cow position:chr16:4972790-4973045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 47

               
               
               Conread position:3-256
               
               
               Cow position:chr16:7457249-7457502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:199
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):32, 63

               
               
               Conread position:3-256
               
               
               Cow position:chr16:12244308-12244561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 102

               
               
               Conread position:3-256
               
               
               Cow position:chr16:14100589-14100332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:3-256
               
               
               Cow position:chr16:15349417-15349667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:191
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):34, 125

               
               
               Conread position:3-256
               
               
               Cow position:chr16:18745303-18745550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):188, 45

               
               
               Conread position:3-256
               
               
               Cow position:chr16:23810254-23810001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:200
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):34, 101

               
               
               Conread position:3-256
               
               
               Cow position:chr16:26500383-26500143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):35, 75

               
               
               Conread position:3-256
               
               
               Cow position:chr16:39475571-39475310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):34, 141

               
               
               Conread position:3-256
               
               
               Cow position:chr16:44049187-44049443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 118

               
               
               Conread position:3-256
               
               
               Cow position:chr16:45465180-45465437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 187

               
               
               Conread position:3-256
               
               
               Cow position:chr16:45534199-45533942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:3-256
               
               
               Cow position:chr16:50190381-50190634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 60

               
               
               Conread position:3-256
               
               
               Cow position:chr16:54231611-54231862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:195
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):34, 147

               
               
               Conread position:3-256
               
               
               Cow position:chr16:56913501-56913754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:193
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 188

               
               
               Conread position:3-257
               
               
               Cow position:chr16:29158349-29158102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:189
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):33, 40

               
               
               Conread position:3-259
               
               
               Cow position:chr16:42733549-42733808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:183
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):34, 94

               
               
               Conread position:3-265
               
               
               Cow position:chr16:45609146-45608887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 124

               
               
               Conread position:3-265
               
               
               Cow position:chr16:50712702-50712967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 256

               
               
               Conread position:3-271
               
               
               Cow position:chr16:5756676-5756400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:206
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):33, 200

               
               
               Conread position:3-271
               
               
               Cow position:chr16:12737017-12736747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:193
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):34, 254

               
               
               Conread position:3-272
               
               
               Cow position:chr16:41804720-41804985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 79

               
               
               Conread position:3-296
               
               
               Cow position:chr16:25743438-25743149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):34, 60

               
               
               Conread position:4-253
               
               
               Cow position:chr16:43562660-43562912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 181

               
               
               Conread position:4-256
               
               
               Cow position:chr16:18650848-18651102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:193
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:4-256
               
               
               Cow position:chr16:20204735-20204484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 43

               
               
               Conread position:4-256
               
               
               Cow position:chr16:25088347-25088089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:4-256
               
               
               Cow position:chr16:25454725-25454980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 185

               
               
               Conread position:4-256
               
               
               Cow position:chr16:27593086-27593342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 187

               
               
               Conread position:4-256
               
               
               Cow position:chr16:32326599-32326344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:191
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):33, 193

               
               
               Conread position:4-256
               
               
               Cow position:chr16:41834602-41834361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 118

               
               
               Conread position:4-256
               
               
               Cow position:chr16:45704061-45704314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 128

               
               
               Conread position:4-256
               
               
               Cow position:chr16:49219217-49219469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 54

               
               
               Conread position:4-256
               
               
               Cow position:chr16:52856108-52856355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:192
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):122, 33

               
               
               Conread position:5-184
               
               
               Cow position:chr16:16267174-16267347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:136
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):121, 24

               
               
               Conread position:8-256
               
               
               Cow position:chr16:840003-839761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:190
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 119

               
               
               Conread position:8-256
               
               
               Cow position:chr16:12535222-12535468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:195
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):29, 123

               
               
               Conread position:8-256
               
               
               Cow position:chr16:14569467-14569717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:196
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):27, 60

               
               
               Conread position:9-256
               
               
               Cow position:chr16:37454753-37455001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 164

               
               
               Conread position:9-271
               
               
               Cow position:chr16:16095932-16095667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:198
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):28, 249

               
               
               Conread position:10-183
               
               
               Cow position:chr16:2224220-2224394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:146
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):27, 47

               
               
               Conread position:10-256
               
               
               Cow position:chr16:49742800-49743043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 85

               
               
               Conread position:11-256
               
               
               Cow position:chr16:4398982-4398737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:191
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):26, 116

               
               
               Conread position:12-257
               
               
               Cow position:chr16:8481903-8482141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):25, 50

               
               
               Conread position:14-272
               
               
               Cow position:chr16:45560019-45559760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 176

               
               
               Conread position:15-248
               
               
               Cow position:chr16:13601917-13602149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:168
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):22, 83

               
               
               Conread position:15-250
               
               
               Cow position:chr16:41623965-41624194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):21, 106

               
               
               Conread position:15-251
               
               
               Cow position:chr16:3332619-3332392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):24, 33

               
               
               Conread position:15-256
               
               
               Cow position:chr16:27013122-27012882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):22, 139

               
               
               Conread position:15-256
               
               
               Cow position:chr16:34482882-34482645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):28, 47

               
               
               Conread position:15-257
               
               
               Cow position:chr16:7155325-7155083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:191
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):28, 52

               
               
               Conread position:16-256
               
               
               Cow position:chr16:5763563-5763326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:191
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 114

               
               
               Conread position:17-177
               
               
               Cow position:chr16:5844629-5844468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):20, 46

               
               
               Conread position:18-256
               
               
               Cow position:chr16:2305083-2304840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:181
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:18-256
               
               
               Cow position:chr16:12651650-12651408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:189
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):19, 173

               
               
               Conread position:18-256
               
               
               Cow position:chr16:41036303-41036546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:187
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:19-253
               
               
               Cow position:chr16:34533011-34532777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:176
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):25, 102

               
               
               Conread position:19-256
               
               
               Cow position:chr16:49126987-49127210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):18, 37

               
               
               Conread position:19-265
               
               
               Cow position:chr16:15255761-15255997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 172

               
               
               Conread position:22-256
               
               
               Cow position:chr16:10859609-10859847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:166
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):21, 153

               
               
               Conread position:23-256
               
               
               Cow position:chr16:51041252-51041030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):14, 39

               
               
               Conread position:26-256
               
               
               Cow position:chr16:6706001-6706235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):11, 165

               
               
               Conread position:28-253
               
               
               Cow position:chr16:29036583-29036360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):134, 8

               
               
               Conread position:30-256
               
               
               Cow position:chr16:2395074-2394842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:163
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:40-256
               
               
               Cow position:chr16:37486556-37486777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:41-210
               
               
               Cow position:chr16:5726090-5725923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:128
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):17, 62

               
               
               Conread position:42-256
               
               
               Cow position:chr16:6264280-6264497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):84, 147

               
               
               Conread position:42-256
               
               
               Cow position:chr16:26388471-26388685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):85, 134

               
               
               Conread position:44-256
               
               
               Cow position:chr16:43855-43642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:161
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):83, 171

               
               
               Conread position:65-257
               
               
               Cow position:chr16:20968278-20968468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):61, 108

               
               
               Conread position:66-256
               
               
               Cow position:chr16:46365129-46365322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:156
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):61, 124

               
               
               Conread position:69-256
               
               
               Cow position:chr16:23875869-23876060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:153
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):59, 122

               
               
               Conread position:73-210
               
               
               Cow position:chr16:7998410-7998275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):22, 117

               
               
               Conread position:74-256
               
               
               Cow position:chr16:37146638-37146457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):138, 46

               
               
               Conread position:75-236
               
               
               Cow position:chr16:24702425-24702588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:124
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:75-252
               
               
               Cow position:chr16:4461648-4461827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:86-256
               
               
               Cow position:chr16:53225667-53225840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):40, 100

               
               
               Conread position:89-257
               
               
               Cow position:chr16:49170334-49170504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):37, 136

               
               
               Conread position:104-256
               
               
               Cow position:chr16:20643123-20642969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):22, 88

               
               
               Conread position:1-168
               
               
               Cow position:chr17:1709652-1709489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):36, 126

               
               
               Conread position:1-256
               
               
               Cow position:chr17:2177278-2177020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 51

               
               
               Conread position:1-256
               
               
               Cow position:chr17:4480584-4480842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 90

               
               
               Conread position:2-183
               
               
               Cow position:chr17:2201595-2201412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:149
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-187
               
               
               Cow position:chr17:254391-254208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):35, 49

               
               
               Conread position:2-190
               
               
               Cow position:chr17:15558870-15558680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:149
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-210
               
               
               Cow position:chr17:21716760-21716554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:163
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-237
               
               
               Cow position:chr17:2521142-2521381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:188
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-246
               
               
               Cow position:chr17:36284565-36284317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:191
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-249
               
               
               Cow position:chr17:453143-452899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:183
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):124, 202

               
               
               Conread position:2-250
               
               
               Cow position:chr17:8205249-8204992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-252
               
               
               Cow position:chr17:14006712-14006471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:182
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):35, 56

               
               
               Conread position:2-253
               
               
               Cow position:chr17:14871981-14871726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:2-253
               
               
               Cow position:chr17:15374688-15374448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):130, 38

               
               
               Conread position:2-253
               
               
               Cow position:chr17:16854799-16855054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:189
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):35, 195

               
               
               Conread position:2-253
               
               
               Cow position:chr17:43991782-43991531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):126, 64

               
               
               Conread position:2-256
               
               
               Cow position:chr17:138900-138648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):35, 79

               
               
               Conread position:2-256
               
               
               Cow position:chr17:148204-147962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr17:184445-184187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr17:731200-731451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 82

               
               
               Conread position:2-256
               
               
               Cow position:chr17:1311465-1311722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 114

               
               
               Conread position:2-256
               
               
               Cow position:chr17:1970449-1970191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr17:2583685-2583432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 60

               
               
               Conread position:2-256
               
               
               Cow position:chr17:4063636-4063380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 191

               
               
               Conread position:2-256
               
               
               Cow position:chr17:4635485-4635735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:193
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):124, 38

               
               
               Conread position:2-256
               
               
               Cow position:chr17:5638590-5638849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 190

               
               
               Conread position:2-256
               
               
               Cow position:chr17:5672218-5672477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 190

               
               
               Conread position:2-256
               
               
               Cow position:chr17:5806191-5806449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr17:6071839-6071575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr17:6123081-6122823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr17:6612320-6612062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr17:6955937-6955687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr17:8212354-8212101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:188
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):35, 119

               
               
               Conread position:2-256
               
               
               Cow position:chr17:8223003-8222745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr17:11083837-11084095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr17:13910319-13910568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):33, 83

               
               
               Conread position:2-256
               
               
               Cow position:chr17:14029049-14029306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 10

               
               
               Conread position:2-256
               
               
               Cow position:chr17:14243124-14242869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 187

               
               
               Conread position:2-256
               
               
               Cow position:chr17:15118115-15117857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr17:15439089-15438831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr17:15708695-15708953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr17:15809285-15809027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:191
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr17:15854033-15853774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 209

               
               
               Conread position:2-256
               
               
               Cow position:chr17:18777534-18777790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:199
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):35, 11

               
               
               Conread position:2-256
               
               
               Cow position:chr17:19215113-19215355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:180
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):35, 96

               
               
               Conread position:2-256
               
               
               Cow position:chr17:20225900-20225642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr17:20391072-20390814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr17:20546435-20546177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr17:21666297-21666044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 119

               
               
               Conread position:2-256
               
               
               Cow position:chr17:21770978-21770720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr17:22248954-22249212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr17:23321122-23321376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 187

               
               
               Conread position:2-256
               
               
               Cow position:chr17:24026688-24026943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 22

               
               
               Conread position:2-256
               
               
               Cow position:chr17:24785488-24785230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 208

               
               
               Conread position:2-256
               
               
               Cow position:chr17:25739594-25739336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 186

               
               
               Conread position:2-256
               
               
               Cow position:chr17:26829446-26829704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:197
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr17:29079655-29079419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):35, 56

               
               
               Conread position:2-256
               
               
               Cow position:chr17:29950510-29950255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 184

               
               
               Conread position:2-256
               
               
               Cow position:chr17:34235953-34236211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr17:37528674-37528932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr17:38992050-38991793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 162

               
               
               Conread position:2-256
               
               
               Cow position:chr17:43471293-43471550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 188

               
               
               Conread position:2-258
               
               
               Cow position:chr17:39823896-39824155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-265
               
               
               Cow position:chr17:18099776-18100042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 187

               
               
               Conread position:2-265
               
               
               Cow position:chr17:29824662-29824929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 164

               
               
               Conread position:2-265
               
               
               Cow position:chr17:30182283-30182548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 88

               
               
               Conread position:2-270
               
               
               Cow position:chr17:15307119-15307366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:194
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):211, 34

               
               
               Conread position:2-270
               
               
               Cow position:chr17:15328579-15328305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 184

               
               
               Conread position:2-275
               
               
               Cow position:chr17:2265486-2265207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 158

               
               
               Conread position:2-275
               
               
               Cow position:chr17:27791490-27791764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 96

               
               
               Conread position:2-276
               
               
               Cow position:chr17:17957895-17957615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:3-170
               
               
               Cow position:chr17:12290189-12290359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:142
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:3-174
               
               
               Cow position:chr17:42313181-42313008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:144
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:3-223
               
               
               Cow position:chr17:38829177-38828956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:178
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):34, 41

               
               
               Conread position:3-252
               
               
               Cow position:chr17:31232967-31232721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:193
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 124

               
               
               Conread position:3-253
               
               
               Cow position:chr17:36265976-36266216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:192
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):26, 49

               
               
               Conread position:3-256
               
               
               Cow position:chr17:50808-51059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:188
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):34, 78

               
               
               Conread position:3-256
               
               
               Cow position:chr17:1568923-1569174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:191
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):33, 173

               
               
               Conread position:3-256
               
               
               Cow position:chr17:20084514-20084773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:202
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):34, 44

               
               
               Conread position:3-256
               
               
               Cow position:chr17:20093863-20094117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 70

               
               
               Conread position:3-263
               
               
               Cow position:chr17:16870000-16870247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:194
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):34, 64

               
               
               Conread position:3-265
               
               
               Cow position:chr17:22563441-22563177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 255

               
               
               Conread position:3-265
               
               
               Cow position:chr17:37415595-37415856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:197
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):124, 34

               
               
               Conread position:3-270
               
               
               Cow position:chr17:18201018-18200762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):209, 93

               
               
               Conread position:3-270
               
               
               Cow position:chr17:33289677-33289936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):34, 131

               
               
               Conread position:3-302
               
               
               Cow position:chr17:17221609-17221304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 18

               
               
               Conread position:4-256
               
               
               Cow position:chr17:6263150-6262896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 62

               
               
               Conread position:4-256
               
               
               Cow position:chr17:17128300-17128045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 58

               
               
               Conread position:5-265
               
               
               Cow position:chr17:16118170-16118426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 117

               
               
               Conread position:8-256
               
               
               Cow position:chr17:21767186-21766937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:186
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):29, 91

               
               
               Conread position:9-190
               
               
               Cow position:chr17:22134486-22134305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:145
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:9-252
               
               
               Cow position:chr17:11032440-11032195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:181
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):30, 149

               
               
               Conread position:9-256
               
               
               Cow position:chr17:16447191-16447438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 184

               
               
               Conread position:9-256
               
               
               Cow position:chr17:29897930-29897683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):28, 86

               
               
               Conread position:10-253
               
               
               Cow position:chr17:15351328-15351090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:187
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):116, 87

               
               
               Conread position:10-256
               
               
               Cow position:chr17:14249815-14250068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:186
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:10-256
               
               
               Cow position:chr17:18591704-18591462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):23, 31

               
               
               Conread position:12-190
               
               
               Cow position:chr17:36747241-36747413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):25, 84

               
               
               Conread position:14-256
               
               
               Cow position:chr17:14212733-14212977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 48

               
               
               Conread position:14-256
               
               
               Cow position:chr17:40811032-40810791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:192
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):115, 10

               
               
               Conread position:15-253
               
               
               Cow position:chr17:2698839-2698596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):21, 32

               
               
               Conread position:15-256
               
               
               Cow position:chr17:1654478-1654722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):22, 135

               
               
               Conread position:15-256
               
               
               Cow position:chr17:20055403-20055167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):21, 47

               
               
               Conread position:15-256
               
               
               Cow position:chr17:20078390-20078627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:192
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 130

               
               
               Conread position:15-270
               
               
               Cow position:chr17:4085352-4085094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:193
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):21, 176

               
               
               Conread position:16-252
               
               
               Cow position:chr17:5043308-5043549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):21, 123

               
               
               Conread position:17-256
               
               
               Cow position:chr17:2078921-2078683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:174
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):20, 45

               
               
               Conread position:17-256
               
               
               Cow position:chr17:15140056-15140299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:193
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 174

               
               
               Conread position:17-256
               
               
               Cow position:chr17:20215366-20215131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):19, 149

               
               
               Conread position:17-256
               
               
               Cow position:chr17:27978386-27978151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):18, 40

               
               
               Conread position:17-265
               
               
               Cow position:chr17:13989981-13990222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:176
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):22, 130

               
               
               Conread position:18-210
               
               
               Cow position:chr17:29083450-29083269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:140
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):17, 32

               
               
               Conread position:18-253
               
               
               Cow position:chr17:1672580-1672342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:187
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 123

               
               
               Conread position:18-256
               
               
               Cow position:chr17:4211211-4210969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 147

               
               
               Conread position:18-256
               
               
               Cow position:chr17:33792353-33792123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:179
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):19, 40

               
               
               Conread position:19-247
               
               
               Cow position:chr17:45878914-45878682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):19, 175

               
               
               Conread position:22-256
               
               
               Cow position:chr17:29471712-29471479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:185
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):104, 11

               
               
               Conread position:23-256
               
               
               Cow position:chr17:11337892-11338109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:171
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):14, 40

               
               
               Conread position:25-253
               
               
               Cow position:chr17:1784271-1784498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:165
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):108, 26

               
               
               Conread position:26-246
               
               
               Cow position:chr17:2839296-2839075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):11, 136

               
               
               Conread position:37-249
               
               
               Cow position:chr17:13674223-13674435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:149
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):175, 103

               
               
               Conread position:46-256
               
               
               Cow position:chr17:28024649-28024862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:168
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):80, 142

               
               
               Conread position:53-182
               
               
               Cow position:chr17:37699465-37699589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:106
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:59-256
               
               
               Cow position:chr17:42247624-42247810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):104, 57

               
               
               Conread position:69-256
               
               
               Cow position:chr17:14932637-14932827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:146
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):58, 123

               
               
               Conread position:90-256
               
               
               Cow position:chr17:14865175-14865344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):37, 99

               
               
               Conread position:101-256
               
               
               Cow position:chr17:5546086-5546245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:117
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:1-187
               
               
               Cow position:chr18:27194025-27193843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):36, 97

               
               
               Conread position:1-256
               
               
               Cow position:chr18:16094407-16094148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 189

               
               
               Conread position:1-256
               
               
               Cow position:chr18:33272157-33271901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:201
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):10, 6

               
               
               Conread position:1-256
               
               
               Cow position:chr18:37509484-37509231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:200
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):32, 149

               
               
               Conread position:2-171
               
               
               Cow position:chr18:4949679-4949512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):33, 119

               
               
               Conread position:2-181
               
               
               Cow position:chr18:36223954-36223783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:139
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):35, 7

               
               
               Conread position:2-187
               
               
               Cow position:chr18:55436613-55436800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-211
               
               
               Cow position:chr18:45981017-45980816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):36, 129

               
               
               Conread position:2-240
               
               
               Cow position:chr18:30844385-30844625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:189
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):35, 130

               
               
               Conread position:2-249
               
               
               Cow position:chr18:43284798-43285035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):189, 34

               
               
               Conread position:2-252
               
               
               Cow position:chr18:10292252-10291998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-252
               
               
               Cow position:chr18:14419498-14419244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 184

               
               
               Conread position:2-253
               
               
               Cow position:chr18:27990278-27990023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 184

               
               
               Conread position:2-253
               
               
               Cow position:chr18:38158021-38158276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-253
               
               
               Cow position:chr18:40195633-40195379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-253
               
               
               Cow position:chr18:47745274-47745019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr18:602943-603201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr18:5536494-5536235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 185

               
               
               Conread position:2-256
               
               
               Cow position:chr18:11870008-11869750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 187

               
               
               Conread position:2-256
               
               
               Cow position:chr18:13270431-13270173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr18:14127766-14128023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 24

               
               
               Conread position:2-256
               
               
               Cow position:chr18:16173092-16173350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr18:16463125-16463383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr18:16857306-16857051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr18:17944031-17943775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 11

               
               
               Conread position:2-256
               
               
               Cow position:chr18:18215492-18215750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr18:19310673-19310430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:189
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):36, 96

               
               
               Conread position:2-256
               
               
               Cow position:chr18:19461801-19461543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 184

               
               
               Conread position:2-256
               
               
               Cow position:chr18:23688693-23688435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr18:23701282-23701535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 126

               
               
               Conread position:2-256
               
               
               Cow position:chr18:23802544-23802286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr18:24037325-24037583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr18:24619944-24619692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:195
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):35, 96

               
               
               Conread position:2-256
               
               
               Cow position:chr18:25355042-25354780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 199

               
               
               Conread position:2-256
               
               
               Cow position:chr18:25923891-25923649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:193
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):125, 143

               
               
               Conread position:2-256
               
               
               Cow position:chr18:26242938-26243195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 61

               
               
               Conread position:2-256
               
               
               Cow position:chr18:28968768-28969026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr18:29071942-29071684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr18:29079258-29079000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr18:29863083-29863341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr18:30607217-30606959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr18:31139273-31139015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr18:32164410-32164668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr18:35293636-35293379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:192
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):129, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr18:35443856-35444105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:194
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):35, 87

               
               
               Conread position:2-256
               
               
               Cow position:chr18:36512152-36511897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 22

               
               
               Conread position:2-256
               
               
               Cow position:chr18:36776797-36776539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 184

               
               
               Conread position:2-256
               
               
               Cow position:chr18:37733210-37732952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr18:40484520-40484263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 95

               
               
               Conread position:2-256
               
               
               Cow position:chr18:41837569-41837827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 184

               
               
               Conread position:2-256
               
               
               Cow position:chr18:43430524-43430270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):124, 32

               
               
               Conread position:2-256
               
               
               Cow position:chr18:43473118-43472861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 103

               
               
               Conread position:2-256
               
               
               Cow position:chr18:50092923-50093181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr18:51459324-51459578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:197
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):35, 76

               
               
               Conread position:2-256
               
               
               Cow position:chr18:51602144-51602402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr18:51654116-51653863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:192
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):35, 119

               
               
               Conread position:2-256
               
               
               Cow position:chr18:51663695-51663440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:194
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):35, 96

               
               
               Conread position:2-256
               
               
               Cow position:chr18:51690318-51690060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr18:52574622-52574378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:200
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):35, 157

               
               
               Conread position:2-256
               
               
               Cow position:chr18:52629737-52629995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 88

               
               
               Conread position:2-256
               
               
               Cow position:chr18:52656315-52656070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 149

               
               
               Conread position:2-256
               
               
               Cow position:chr18:54047400-54047142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-257
               
               
               Cow position:chr18:51485108-51484853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:195
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):35, 107

               
               
               Conread position:2-257
               
               
               Cow position:chr18:55554772-55554513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-265
               
               
               Cow position:chr18:6733444-6733708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-265
               
               
               Cow position:chr18:30876752-30877010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:184
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):35, 56

               
               
               Conread position:2-265
               
               
               Cow position:chr18:51698161-51697901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:190
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):35, 209

               
               
               Conread position:2-270
               
               
               Cow position:chr18:54033229-54032965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:201
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):35, 187

               
               
               Conread position:2-272
               
               
               Cow position:chr18:3190265-3190002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-274
               
               
               Cow position:chr18:1145030-1145306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:207
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):35, 129

               
               
               Conread position:3-170
               
               
               Cow position:chr18:32122163-32122329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):34, 142

               
               
               Conread position:3-190
               
               
               Cow position:chr18:29240839-29240652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):34, 44

               
               
               Conread position:3-239
               
               
               Cow position:chr18:37692765-37693007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:192
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):34, 59

               
               
               Conread position:3-244
               
               
               Cow position:chr18:12269673-12269428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):90, 190

               
               
               Conread position:3-252
               
               
               Cow position:chr18:33607747-33607502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:198
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):37, 59

               
               
               Conread position:3-253
               
               
               Cow position:chr18:41238051-41237805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:183
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):32, 79

               
               
               Conread position:3-256
               
               
               Cow position:chr18:1022502-1022756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 190

               
               
               Conread position:3-256
               
               
               Cow position:chr18:8965811-8965574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:189
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):34, 58

               
               
               Conread position:3-256
               
               
               Cow position:chr18:10113528-10113278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:188
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):34, 87

               
               
               Conread position:3-256
               
               
               Cow position:chr18:16226742-16226495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 155

               
               
               Conread position:3-256
               
               
               Cow position:chr18:35057545-35057289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 118

               
               
               Conread position:3-256
               
               
               Cow position:chr18:36771014-36771269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):34, 29

               
               
               Conread position:3-265
               
               
               Cow position:chr18:5570047-5569796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:3-265
               
               
               Cow position:chr18:33406828-33406562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:191
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:3-265
               
               
               Cow position:chr18:33522738-33522482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 105

               
               
               Conread position:3-272
               
               
               Cow position:chr18:10896708-10896438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:199
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):34, 109

               
               
               Conread position:3-302
               
               
               Cow position:chr18:25972546-25972850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:209
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):30, 130

               
               
               Conread position:3-302
               
               
               Cow position:chr18:54065554-54065856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 224

               
               
               Conread position:4-170
               
               
               Cow position:chr18:26305791-26305624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:138
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):33, 86

               
               
               Conread position:4-186
               
               
               Cow position:chr18:89671-89481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:4-187
               
               
               Cow position:chr18:42242829-42243009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:139
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):33, 9

               
               
               Conread position:4-253
               
               
               Cow position:chr18:23659376-23659628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:6-258
               
               
               Cow position:chr18:48240851-48240613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:184
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):12, 31

               
               
               Conread position:8-253
               
               
               Cow position:chr18:10221169-10221418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 183

               
               
               Conread position:9-253
               
               
               Cow position:chr18:47985404-47985162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 86

               
               
               Conread position:13-256
               
               
               Cow position:chr18:19356023-19355776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 177

               
               
               Conread position:13-256
               
               
               Cow position:chr18:56483156-56483401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):24, 45

               
               
               Conread position:15-247
               
               
               Cow position:chr18:17335233-17335468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:182
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:15-253
               
               
               Cow position:chr18:36648902-36648671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:177
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):21, 35

               
               
               Conread position:15-253
               
               
               Cow position:chr18:42080516-42080750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:180
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):22, 78

               
               
               Conread position:15-256
               
               
               Cow position:chr18:17323883-17323643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):22, 86

               
               
               Conread position:15-275
               
               
               Cow position:chr18:29946958-29946700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:185
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):22, 80

               
               
               Conread position:16-251
               
               
               Cow position:chr18:4890019-4889785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):21, 178

               
               
               Conread position:18-175
               
               
               Cow position:chr18:39002624-39002778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):19, 44

               
               
               Conread position:18-250
               
               
               Cow position:chr18:16045825-16046055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:171
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):8, 173

               
               
               Conread position:18-253
               
               
               Cow position:chr18:23716158-23716394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:162
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):17, 154

               
               
               Conread position:18-276
               
               
               Cow position:chr18:21797598-21797336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):19, 242

               
               
               Conread position:28-249
               
               
               Cow position:chr18:33501488-33501712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):98, 164

               
               
               Conread position:28-256
               
               
               Cow position:chr18:27539927-27539695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:178
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:29-256
               
               
               Cow position:chr18:37582964-37583194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:178
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):8, 161

               
               
               Conread position:47-216
               
               
               Cow position:chr18:27834351-27834519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):37, 140

               
               
               Conread position:48-256
               
               
               Cow position:chr18:50834911-50835122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:168
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):79, 142

               
               
               Conread position:52-256
               
               
               Cow position:chr18:32436631-32436838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:158
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):75, 148

               
               
               Conread position:74-256
               
               
               Cow position:chr18:19468980-19468795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):53, 111

               
               
               Conread position:103-256
               
               
               Cow position:chr18:22182120-22182276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):23, 86

               
               
               Conread position:108-256
               
               
               Cow position:chr18:17381227-17381076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):19, 81

               
               
               Conread position:1-256
               
               
               Cow position:chr19:12652403-12652139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:1-272
               
               
               Cow position:chr19:36351796-36351518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 97

               
               
               Conread position:2-183
               
               
               Cow position:chr19:30237235-30237054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:149
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):35, 59

               
               
               Conread position:2-186
               
               
               Cow position:chr19:14528348-14528171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):124, 35

               
               
               Conread position:2-189
               
               
               Cow position:chr19:26518804-26518993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-216
               
               
               Cow position:chr19:8273546-8273758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:167
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-253
               
               
               Cow position:chr19:930346-930091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 191

               
               
               Conread position:2-253
               
               
               Cow position:chr19:1293877-1293622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 185

               
               
               Conread position:2-253
               
               
               Cow position:chr19:19389361-19389106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 187

               
               
               Conread position:2-253
               
               
               Cow position:chr19:20611861-20611606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-253
               
               
               Cow position:chr19:39339544-39339796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 16

               
               
               Conread position:2-256
               
               
               Cow position:chr19:6628-6376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:193
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):34, 93

               
               
               Conread position:2-256
               
               
               Cow position:chr19:41860-41602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr19:176004-175737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr19:405675-405416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 191

               
               
               Conread position:2-256
               
               
               Cow position:chr19:435809-436069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr19:444411-444666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:188
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):35, 142

               
               
               Conread position:2-256
               
               
               Cow position:chr19:1581382-1581640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:187
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr19:2269774-2270032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr19:3086319-3086062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:196
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):35, 89

               
               
               Conread position:2-256
               
               
               Cow position:chr19:5733022-5732764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 187

               
               
               Conread position:2-256
               
               
               Cow position:chr19:5902554-5902296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr19:7480416-7480665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):35, 109

               
               
               Conread position:2-256
               
               
               Cow position:chr19:9118337-9118079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr19:10195940-10195682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr19:10613755-10613497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr19:12209403-12209665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr19:14157935-14157683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr19:22512771-22512514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 190

               
               
               Conread position:2-256
               
               
               Cow position:chr19:24734664-24734412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:191
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):35, 106

               
               
               Conread position:2-256
               
               
               Cow position:chr19:29393869-29393611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr19:30037380-30037638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr19:31782097-31781840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr19:33119197-33119455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr19:33528374-33528116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr19:33876943-33876685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr19:33945093-33944836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr19:34905798-34906056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr19:35781403-35781145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:191
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr19:37844261-37844511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 124

               
               
               Conread position:2-256
               
               
               Cow position:chr19:39182013-39182271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr19:40016065-40016318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:185
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):211, 38

               
               
               Conread position:2-256
               
               
               Cow position:chr19:40790831-40791087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):124, 26

               
               
               Conread position:2-256
               
               
               Cow position:chr19:40848962-40849220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr19:41204700-41204958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr19:43149108-43148850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:193
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr19:48626586-48626328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr19:55164130-55164388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-257
               
               
               Cow position:chr19:5044170-5044414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:202
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):35, 130

               
               
               Conread position:2-257
               
               
               Cow position:chr19:28596903-28596644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 187

               
               
               Conread position:2-269
               
               
               Cow position:chr19:7078783-7078513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:205
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-272
               
               
               Cow position:chr19:28794804-28795075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:211
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):37, 166

               
               
               Conread position:2-275
               
               
               Cow position:chr19:27081888-27082167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 174

               
               
               Conread position:2-296
               
               
               Cow position:chr19:29367055-29366754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 289

               
               
               Conread position:2-296
               
               
               Cow position:chr19:29624563-29624262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 289

               
               
               Conread position:3-179
               
               
               Cow position:chr19:14180475-14180652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:146
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):34, 102

               
               
               Conread position:3-256
               
               
               Cow position:chr19:777038-776782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 140

               
               
               Conread position:3-256
               
               
               Cow position:chr19:799892-799646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:195
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):40, 87

               
               
               Conread position:3-256
               
               
               Cow position:chr19:2588708-2588458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):33, 59

               
               
               Conread position:3-256
               
               
               Cow position:chr19:7472573-7472329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):124, 34

               
               
               Conread position:3-256
               
               
               Cow position:chr19:9704666-9704917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:188
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):34, 139

               
               
               Conread position:3-256
               
               
               Cow position:chr19:32952347-32952095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):31, 61

               
               
               Conread position:3-256
               
               
               Cow position:chr19:39697010-39696759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 184

               
               
               Conread position:3-256
               
               
               Cow position:chr19:46821377-46821125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:183
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):34, 49

               
               
               Conread position:3-260
               
               
               Cow position:chr19:27347542-27347787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):34, 58

               
               
               Conread position:4-256
               
               
               Cow position:chr19:39394726-39394470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:8-257
               
               
               Cow position:chr19:542103-542355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):27, 87

               
               
               Conread position:8-272
               
               
               Cow position:chr19:45464654-45464391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:200
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):29, 55

               
               
               Conread position:9-251
               
               
               Cow position:chr19:55843518-55843278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:188
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):28, 89

               
               
               Conread position:9-256
               
               
               Cow position:chr19:28450335-28450094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):28, 58

               
               
               Conread position:11-256
               
               
               Cow position:chr19:208018-207769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 180

               
               
               Conread position:12-256
               
               
               Cow position:chr19:743199-743433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:185
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):25, 91

               
               
               Conread position:12-256
               
               
               Cow position:chr19:35982286-35982040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:167
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):25, 73

               
               
               Conread position:12-265
               
               
               Cow position:chr19:255610-255864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:186
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):23, 66

               
               
               Conread position:14-256
               
               
               Cow position:chr19:4389092-4388852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:188
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):23, 10

               
               
               Conread position:14-256
               
               
               Cow position:chr19:23488274-23488030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:192
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 177

               
               
               Conread position:14-256
               
               
               Cow position:chr19:48534243-48533997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:191
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):22, 54

               
               
               Conread position:15-252
               
               
               Cow position:chr19:3221625-3221379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 80

               
               
               Conread position:16-256
               
               
               Cow position:chr19:33593984-33594230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:168
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):23, 81

               
               
               Conread position:18-168
               
               
               Cow position:chr19:32683076-32682925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):19, 79

               
               
               Conread position:19-256
               
               
               Cow position:chr19:55378403-55378164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:181
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):18, 188

               
               
               Conread position:20-256
               
               
               Cow position:chr19:46873516-46873756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 173

               
               
               Conread position:26-256
               
               
               Cow position:chr19:22391720-22391486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:181
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):11, 165

               
               
               Conread position:28-238
               
               
               Cow position:chr19:27613003-27613216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:158
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):99, 177

               
               
               Conread position:29-256
               
               
               Cow position:chr19:5026692-5026923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:180
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):8, 162

               
               
               Conread position:34-265
               
               
               Cow position:chr19:267598-267367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:171
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):131, 97

               
               
               Conread position:43-172
               
               
               Cow position:chr19:33616275-33616145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:113
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:52-253
               
               
               Cow position:chr19:17883440-17883237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:145
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):140, 155

               
               
               Conread position:53-252
               
               
               Cow position:chr19:344853-344659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):75, 129

               
               
               Conread position:59-256
               
               
               Cow position:chr19:33573251-33573448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:161
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):67, 130

               
               
               Conread position:73-253
               
               
               Cow position:chr19:730539-730719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:141
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):53, 88

               
               
               Conread position:102-256
               
               
               Cow position:chr19:1564370-1564527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):25, 88

               
               
               Conread position:105-256
               
               
               Cow position:chr19:16478444-16478598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:121
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):21, 80

               
               
               Conread position:1-253
               
               
               Cow position:chr2:74761858-74761596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:1-256
               
               
               Cow position:chr2:981972-981713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:1-256
               
               
               Cow position:chr2:4417090-4417346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 163

               
               
               Conread position:1-256
               
               
               Cow position:chr2:10183257-10183515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 61

               
               
               Conread position:1-256
               
               
               Cow position:chr2:10608824-10609075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:204
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):36, 12

               
               
               Conread position:1-256
               
               
               Cow position:chr2:11705615-11705356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:1-256
               
               
               Cow position:chr2:53003234-53003491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 151

               
               
               Conread position:1-257
               
               
               Cow position:chr2:4017633-4017879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):193, 43

               
               
               Conread position:1-257
               
               
               Cow position:chr2:4804767-4805027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:1-265
               
               
               Cow position:chr2:79967012-79967271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 130

               
               
               Conread position:2-168
               
               
               Cow position:chr2:34572255-34572422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):35, 16

               
               
               Conread position:2-170
               
               
               Cow position:chr2:36435231-36435062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):33, 56

               
               
               Conread position:2-170
               
               
               Cow position:chr2:36467379-36467210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):33, 56

               
               
               Conread position:2-171
               
               
               Cow position:chr2:1199879-1200049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:140
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-186
               
               
               Cow position:chr2:42839107-42839293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:149
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:2-187
               
               
               Cow position:chr2:12747475-12747284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-187
               
               
               Cow position:chr2:38512960-38512773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-187
               
               
               Cow position:chr2:52857342-52857529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:148
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-231
               
               
               Cow position:chr2:47618551-47618318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:175
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-232
               
               
               Cow position:chr2:19809567-19809333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-240
               
               
               Cow position:chr2:1186885-1187128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:187
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):35, 192

               
               
               Conread position:2-246
               
               
               Cow position:chr2:13006276-13006034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):33, 61

               
               
               Conread position:2-248
               
               
               Cow position:chr2:11153010-11153260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:191
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-248
               
               
               Cow position:chr2:30657385-30657633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:188
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-249
               
               
               Cow position:chr2:4400160-4400411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:190
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):34, 191

               
               
               Conread position:2-250
               
               
               Cow position:chr2:45917801-45918053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:2-250
               
               
               Cow position:chr2:67417799-67418048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:198
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):35, 157

               
               
               Conread position:2-252
               
               
               Cow position:chr2:6528799-6528545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-252
               
               
               Cow position:chr2:49461390-49461136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-252
               
               
               Cow position:chr2:53663484-53663232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 157

               
               
               Conread position:2-252
               
               
               Cow position:chr2:84101699-84101953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:193
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-253
               
               
               Cow position:chr2:5901768-5902018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 83

               
               
               Conread position:2-253
               
               
               Cow position:chr2:11726345-11726093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:196
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):35, 86

               
               
               Conread position:2-253
               
               
               Cow position:chr2:21981785-21982040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 190

               
               
               Conread position:2-253
               
               
               Cow position:chr2:33080806-33081061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 191

               
               
               Conread position:2-253
               
               
               Cow position:chr2:57938366-57938111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-255
               
               
               Cow position:chr2:53182746-53183002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 60

               
               
               Conread position:2-256
               
               
               Cow position:chr2:104773-105030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr2:279278-279531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:196
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):35, 47

               
               
               Conread position:2-256
               
               
               Cow position:chr2:362555-362812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 78

               
               
               Conread position:2-256
               
               
               Cow position:chr2:825982-826229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:197
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):35, 166

               
               
               Conread position:2-256
               
               
               Cow position:chr2:1693879-1693621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:197
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr2:2018530-2018278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr2:2095837-2096094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:191
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):35, 146

               
               
               Conread position:2-256
               
               
               Cow position:chr2:2181302-2181558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 72

               
               
               Conread position:2-256
               
               
               Cow position:chr2:2208696-2208953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr2:2212520-2212777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr2:2558355-2558611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:199
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):35, 110

               
               
               Conread position:2-256
               
               
               Cow position:chr2:2603632-2603379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 154

               
               
               Conread position:2-256
               
               
               Cow position:chr2:3623492-3623234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr2:3669031-3668773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr2:4237573-4237829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 202

               
               
               Conread position:2-256
               
               
               Cow position:chr2:4340329-4340071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr2:4742336-4742078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:197
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr2:4833348-4833605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 174

               
               
               Conread position:2-256
               
               
               Cow position:chr2:4917098-4917356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr2:5116909-5116661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:189
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):35, 96

               
               
               Conread position:2-256
               
               
               Cow position:chr2:5606373-5606115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr2:6003865-6004123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:196
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):33, 191

               
               
               Conread position:2-256
               
               
               Cow position:chr2:7370638-7370380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr2:7506613-7506868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:198
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):33, 119

               
               
               Conread position:2-256
               
               
               Cow position:chr2:8121669-8121409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:195
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):35, 93

               
               
               Conread position:2-256
               
               
               Cow position:chr2:8529642-8529385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:193
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr2:9688331-9688588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr2:9700495-9700237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr2:9911248-9910992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 14

               
               
               Conread position:2-256
               
               
               Cow position:chr2:10123078-10123336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr2:10262437-10262695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 187

               
               
               Conread position:2-256
               
               
               Cow position:chr2:10882406-10882148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr2:10972041-10971784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 71

               
               
               Conread position:2-256
               
               
               Cow position:chr2:11813579-11813837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:197
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr2:12752308-12752566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr2:12935273-12935519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):35, 90

               
               
               Conread position:2-256
               
               
               Cow position:chr2:13067034-13067292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr2:16326954-16327211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 88

               
               
               Conread position:2-256
               
               
               Cow position:chr2:16717932-16718190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr2:17119107-17119365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 191

               
               
               Conread position:2-256
               
               
               Cow position:chr2:17265464-17265720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):125, 32

               
               
               Conread position:2-256
               
               
               Cow position:chr2:17807597-17807845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:193
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):35, 19

               
               
               Conread position:2-256
               
               
               Cow position:chr2:18020942-18021194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):35, 77

               
               
               Conread position:2-256
               
               
               Cow position:chr2:18350427-18350685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr2:18520851-18521101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:193
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):35, 115

               
               
               Conread position:2-256
               
               
               Cow position:chr2:19048899-19049156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 187

               
               
               Conread position:2-256
               
               
               Cow position:chr2:19540460-19540718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr2:24688651-24688393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr2:24876232-24876480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:188
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):35, 73

               
               
               Conread position:2-256
               
               
               Cow position:chr2:25024081-25023831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:188
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):35, 96

               
               
               Conread position:2-256
               
               
               Cow position:chr2:26129898-26130156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr2:28646655-28646913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr2:28796816-28796559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:198
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):33, 12

               
               
               Conread position:2-256
               
               
               Cow position:chr2:28847543-28847287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr2:29218934-29218678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 99

               
               
               Conread position:2-256
               
               
               Cow position:chr2:29956105-29956357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 121

               
               
               Conread position:2-256
               
               
               Cow position:chr2:29967364-29967622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr2:30380246-30379988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 186

               
               
               Conread position:2-256
               
               
               Cow position:chr2:31047836-31047578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr2:31407374-31407632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:198
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr2:34502103-34501845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr2:35883498-35883756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:191
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr2:36722020-36721762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr2:36867588-36867839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr2:36910173-36910431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr2:37324855-37324599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 89

               
               
               Conread position:2-256
               
               
               Cow position:chr2:37396351-37396093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr2:38487347-38487089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr2:38636341-38636599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr2:39119573-39119315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr2:39675786-39676033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:198
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):35, 119

               
               
               Conread position:2-256
               
               
               Cow position:chr2:43046799-43047057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr2:44094336-44094080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 191

               
               
               Conread position:2-256
               
               
               Cow position:chr2:44476518-44476775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 184

               
               
               Conread position:2-256
               
               
               Cow position:chr2:46182565-46182822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 45

               
               
               Conread position:2-256
               
               
               Cow position:chr2:47181776-47182037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:196
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):35, 192

               
               
               Conread position:2-256
               
               
               Cow position:chr2:48850271-48850529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:191
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr2:49301055-49301308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 126

               
               
               Conread position:2-256
               
               
               Cow position:chr2:49474872-49474614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr2:49630294-49630039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 194

               
               
               Conread position:2-256
               
               
               Cow position:chr2:49827567-49827825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr2:50060025-50060283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr2:50080536-50080277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 193

               
               
               Conread position:2-256
               
               
               Cow position:chr2:51921593-51921852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:203
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):28, 95

               
               
               Conread position:2-256
               
               
               Cow position:chr2:52621746-52621488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr2:53204156-53204414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr2:53332775-53332516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 190

               
               
               Conread position:2-256
               
               
               Cow position:chr2:53542910-53542652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr2:56306859-56307117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 191

               
               
               Conread position:2-256
               
               
               Cow position:chr2:57338926-57338668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:198
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):36, 187

               
               
               Conread position:2-256
               
               
               Cow position:chr2:62731495-62731239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr2:62735140-62734882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr2:63707179-63707437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr2:63890269-63890523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:189
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr2:64531261-64531003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr2:67187874-67188132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 191

               
               
               Conread position:2-256
               
               
               Cow position:chr2:67682755-67682497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:197
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):35, 191

               
               
               Conread position:2-256
               
               
               Cow position:chr2:68422523-68422266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 89

               
               
               Conread position:2-256
               
               
               Cow position:chr2:70524727-70524469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:193
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr2:70669678-70669423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:197
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):35, 149

               
               
               Conread position:2-256
               
               
               Cow position:chr2:72016786-72016528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr2:72535256-72534996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:204
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):34, 169

               
               
               Conread position:2-256
               
               
               Cow position:chr2:72931118-72931372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:200
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):34, 106

               
               
               Conread position:2-256
               
               
               Cow position:chr2:74237694-74237950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr2:74469022-74469280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr2:79978120-79978368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):35, 96

               
               
               Conread position:2-256
               
               
               Cow position:chr2:80162048-80162292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr2:86496622-86496368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 93

               
               
               Conread position:2-257
               
               
               Cow position:chr2:9956259-9956518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 191

               
               
               Conread position:2-257
               
               
               Cow position:chr2:9962099-9962358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 191

               
               
               Conread position:2-257
               
               
               Cow position:chr2:37120421-37120163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 21

               
               
               Conread position:2-259
               
               
               Cow position:chr2:30815763-30816023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:197
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):37, 59

               
               
               Conread position:2-260
               
               
               Cow position:chr2:11792273-11792013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 118

               
               
               Conread position:2-265
               
               
               Cow position:chr2:10741182-10741435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):211, 38

               
               
               Conread position:2-265
               
               
               Cow position:chr2:36983623-36983357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-265
               
               
               Cow position:chr2:81147008-81147278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 261

               
               
               Conread position:2-266
               
               
               Cow position:chr2:24928354-24928084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-270
               
               
               Cow position:chr2:4451079-4451352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-270
               
               
               Cow position:chr2:50431677-50431945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 119

               
               
               Conread position:2-272
               
               
               Cow position:chr2:817418-817150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):35, 45

               
               
               Conread position:2-272
               
               
               Cow position:chr2:3840211-3839942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:203
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):35, 89

               
               
               Conread position:2-272
               
               
               Cow position:chr2:52128363-52128632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 191

               
               
               Conread position:2-274
               
               
               Cow position:chr2:21169312-21169044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:206
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):35, 60

               
               
               Conread position:2-275
               
               
               Cow position:chr2:209135-209415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-275
               
               
               Cow position:chr2:14207880-14208154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:213
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):35, 96

               
               
               Conread position:2-275
               
               
               Cow position:chr2:21606518-21606230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 194

               
               
               Conread position:2-275
               
               
               Cow position:chr2:57054532-57054249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:212
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-278
               
               
               Cow position:chr2:63070318-63070596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 191

               
               
               Conread position:2-299
               
               
               Cow position:chr2:2084412-2084712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:185
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):35, 146

               
               
               Conread position:2-303
               
               
               Cow position:chr2:77859291-77858989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 119

               
               
               Conread position:3-167
               
               
               Cow position:chr2:24436120-24436285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):34, 156

               
               
               Conread position:3-179
               
               
               Cow position:chr2:78749751-78749574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):124, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr2:16313754-16313571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:147
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):28, 101

               
               
               Conread position:3-185
               
               
               Cow position:chr2:2688346-2688163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):32, 45

               
               
               Conread position:3-187
               
               
               Cow position:chr2:36135869-36135680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):72, 37

               
               
               Conread position:3-189
               
               
               Cow position:chr2:37008634-37008447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):32, 165

               
               
               Conread position:3-190
               
               
               Cow position:chr2:77281148-77280960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:156
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):34, 92

               
               
               Conread position:3-226
               
               
               Cow position:chr2:67743862-67743639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:180
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 190

               
               
               Conread position:3-252
               
               
               Cow position:chr2:4180147-4180400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:193
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):34, 188

               
               
               Conread position:3-252
               
               
               Cow position:chr2:31456701-31456451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:189
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):34, 193

               
               
               Conread position:3-252
               
               
               Cow position:chr2:41953979-41953731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):34, 60

               
               
               Conread position:3-253
               
               
               Cow position:chr2:6064519-6064770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):34, 55

               
               
               Conread position:3-253
               
               
               Cow position:chr2:16319407-16319153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 192

               
               
               Conread position:3-253
               
               
               Cow position:chr2:16331164-16330911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 55

               
               
               Conread position:3-253
               
               
               Cow position:chr2:25885579-25885833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:197
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):35, 186

               
               
               Conread position:3-254
               
               
               Cow position:chr2:41157148-41156894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:199
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):34, 98

               
               
               Conread position:3-256
               
               
               Cow position:chr2:12184737-12184482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:191
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 153

               
               
               Conread position:3-256
               
               
               Cow position:chr2:12286166-12285916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:196
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):34, 88

               
               
               Conread position:3-256
               
               
               Cow position:chr2:12330894-12330643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):33, 40

               
               
               Conread position:3-256
               
               
               Cow position:chr2:12595920-12595667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 190

               
               
               Conread position:3-256
               
               
               Cow position:chr2:15241192-15241449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 188

               
               
               Conread position:3-256
               
               
               Cow position:chr2:16752927-16753183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 52

               
               
               Conread position:3-256
               
               
               Cow position:chr2:27358033-27357791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 92

               
               
               Conread position:3-256
               
               
               Cow position:chr2:32659412-32659161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 54

               
               
               Conread position:3-256
               
               
               Cow position:chr2:33251656-33251917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:208
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):34, 72

               
               
               Conread position:3-256
               
               
               Cow position:chr2:36047348-36047599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:193
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 68

               
               
               Conread position:3-256
               
               
               Cow position:chr2:45936762-45937015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:192
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):191, 54

               
               
               Conread position:3-256
               
               
               Cow position:chr2:52159691-52159935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:182
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):34, 55

               
               
               Conread position:3-256
               
               
               Cow position:chr2:54716403-54716150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):33, 58

               
               
               Conread position:3-256
               
               
               Cow position:chr2:55481256-55481506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:189
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):33, 114

               
               
               Conread position:3-256
               
               
               Cow position:chr2:55876610-55876358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:190
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):34, 140

               
               
               Conread position:3-256
               
               
               Cow position:chr2:58466644-58466387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 182

               
               
               Conread position:3-256
               
               
               Cow position:chr2:62683636-62683378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:3-256
               
               
               Cow position:chr2:68191383-68191642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:202
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):34, 60

               
               
               Conread position:3-256
               
               
               Cow position:chr2:76985512-76985761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:175
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):34, 125

               
               
               Conread position:3-256
               
               
               Cow position:chr2:86349258-86349002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 187

               
               
               Conread position:3-257
               
               
               Cow position:chr2:16324642-16324393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:193
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):35, 124

               
               
               Conread position:3-257
               
               
               Cow position:chr2:26906217-26905960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 188

               
               
               Conread position:3-268
               
               
               Cow position:chr2:21407442-21407173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 186

               
               
               Conread position:3-270
               
               
               Cow position:chr2:17941080-17941355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:3-270
               
               
               Cow position:chr2:28617431-28617690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:189
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):35, 125

               
               
               Conread position:3-272
               
               
               Cow position:chr2:77468237-77468500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):123, 58

               
               
               Conread position:3-287
               
               
               Cow position:chr2:15569117-15569407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:211
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):34, 67

               
               
               Conread position:3-302
               
               
               Cow position:chr2:56054712-56054410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 127

               
               
               Conread position:4-186
               
               
               Cow position:chr2:38335344-38335160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:143
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:4-189
               
               
               Cow position:chr2:6698268-6698447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):33, 126

               
               
               Conread position:4-256
               
               
               Cow position:chr2:9714633-9714383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:196
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):33, 94

               
               
               Conread position:4-256
               
               
               Cow position:chr2:28638058-28638304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:186
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):31, 58

               
               
               Conread position:4-256
               
               
               Cow position:chr2:31499195-31498946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):32, 57

               
               
               Conread position:4-256
               
               
               Cow position:chr2:50565283-50565026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:4-256
               
               
               Cow position:chr2:57587114-57587370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 187

               
               
               Conread position:4-256
               
               
               Cow position:chr2:59410787-59411040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:197
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):33, 117

               
               
               Conread position:4-256
               
               
               Cow position:chr2:63067914-63068168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 53

               
               
               Conread position:4-256
               
               
               Cow position:chr2:72939785-72940041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 187

               
               
               Conread position:5-252
               
               
               Cow position:chr2:2409878-2410124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:193
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):32, 59

               
               
               Conread position:8-152
               
               
               Cow position:chr2:28725442-28725298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:129
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):29, 113

               
               
               Conread position:8-164
               
               
               Cow position:chr2:76314839-76314991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:8-183
               
               
               Cow position:chr2:50812312-50812135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:147
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:8-187
               
               
               Cow position:chr2:6038201-6038376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):29, 119

               
               
               Conread position:8-253
               
               
               Cow position:chr2:25742306-25742555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 185

               
               
               Conread position:8-256
               
               
               Cow position:chr2:20977998-20977752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 123

               
               
               Conread position:8-256
               
               
               Cow position:chr2:42667741-42667993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 178

               
               
               Conread position:8-256
               
               
               Cow position:chr2:53557129-53556878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:195
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):29, 61

               
               
               Conread position:8-256
               
               
               Cow position:chr2:54740435-54740186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:192
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:8-265
               
               
               Cow position:chr2:4725927-4725670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:179
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):118, 40

               
               
               Conread position:9-250
               
               
               Cow position:chr2:80840206-80840450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 159

               
               
               Conread position:9-256
               
               
               Cow position:chr2:42502491-42502241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:185
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):28, 99

               
               
               Conread position:9-265
               
               
               Cow position:chr2:5997791-5997533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:192
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:9-272
               
               
               Cow position:chr2:72542768-72542515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:206
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):86, 58

               
               
               Conread position:10-189
               
               
               Cow position:chr2:69648127-69648312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:10-256
               
               
               Cow position:chr2:778489-778737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:179
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:10-256
               
               
               Cow position:chr2:78765612-78765363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 118

               
               
               Conread position:12-256
               
               
               Cow position:chr2:2590731-2590972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):23, 63

               
               
               Conread position:13-256
               
               
               Cow position:chr2:243386-243632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:192
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:14-253
               
               
               Cow position:chr2:19014311-19014071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:187
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 172

               
               
               Conread position:14-256
               
               
               Cow position:chr2:12221333-12221579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:192
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):23, 177

               
               
               Conread position:14-256
               
               
               Cow position:chr2:16301879-16301634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 114

               
               
               Conread position:14-256
               
               
               Cow position:chr2:50980207-50980442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:190
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):21, 50

               
               
               Conread position:14-270
               
               
               Cow position:chr2:70498676-70498932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 177

               
               
               Conread position:14-283
               
               
               Cow position:chr2:78301441-78301708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):117, 23

               
               
               Conread position:15-250
               
               
               Cow position:chr2:43525901-43526130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:165
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):104, 27

               
               
               Conread position:15-256
               
               
               Cow position:chr2:20917225-20917458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):21, 126

               
               
               Conread position:15-256
               
               
               Cow position:chr2:51480126-51479882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:191
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 165

               
               
               Conread position:15-256
               
               
               Cow position:chr2:73992683-73992438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):22, 136

               
               
               Conread position:15-265
               
               
               Cow position:chr2:40312485-40312230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):14, 45

               
               
               Conread position:16-248
               
               
               Cow position:chr2:36058488-36058721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:169
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):21, 190

               
               
               Conread position:17-256
               
               
               Cow position:chr2:56830848-56831084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):110, 19

               
               
               Conread position:17-256
               
               
               Cow position:chr2:80875405-80875649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):18, 159

               
               
               Conread position:17-265
               
               
               Cow position:chr2:9186930-9187175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:188
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):20, 59

               
               
               Conread position:18-252
               
               
               Cow position:chr2:31409927-31410164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:183
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):19, 48

               
               
               Conread position:18-256
               
               
               Cow position:chr2:15060027-15060256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:190
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):19, 109

               
               
               Conread position:18-265
               
               
               Cow position:chr2:36104430-36104177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):18, 132

               
               
               Conread position:18-290
               
               
               Cow position:chr2:15572113-15572385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):17, 111

               
               
               Conread position:19-265
               
               
               Cow position:chr2:7905894-7905650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:191
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):18, 43

               
               
               Conread position:19-328
               
               
               Cow position:chr2:76560543-76560227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 174

               
               
               Conread position:20-172
               
               
               Cow position:chr2:19293844-19293695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:129
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):16, 54

               
               
               Conread position:20-256
               
               
               Cow position:chr2:22306322-22306562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):46, 104

               
               
               Conread position:22-270
               
               
               Cow position:chr2:2059399-2059648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:199
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):13, 140

               
               
               Conread position:23-209
               
               
               Cow position:chr2:33402953-33403131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:144
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):12, 44

               
               
               Conread position:24-252
               
               
               Cow position:chr2:49481407-49481634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):13, 124

               
               
               Conread position:26-256
               
               
               Cow position:chr2:25961318-25961551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):9, 65

               
               
               Conread position:28-209
               
               
               Cow position:chr2:31511975-31511796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:143
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):9, 162

               
               
               Conread position:31-257
               
               
               Cow position:chr2:47035462-47035690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:177
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):6, 160

               
               
               Conread position:32-271
               
               
               Cow position:chr2:31645177-31644936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):95, 158

               
               
               Conread position:43-238
               
               
               Cow position:chr2:16321988-16321795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:147
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):149, 29

               
               
               Conread position:44-256
               
               
               Cow position:chr2:41764187-41763972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:165
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):83, 146

               
               
               Conread position:45-270
               
               
               Cow position:chr2:58564831-58565056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):83, 206

               
               
               Conread position:46-263
               
               
               Cow position:chr2:40772841-40772621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):15, 115

               
               
               Conread position:47-256
               
               
               Cow position:chr2:56265875-56265667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:156
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):80, 146

               
               
               Conread position:51-265
               
               
               Cow position:chr2:33263435-33263648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:148
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):140, 154

               
               
               Conread position:53-265
               
               
               Cow position:chr2:6965838-6965632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:163
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):159, 8

               
               
               Conread position:58-257
               
               
               Cow position:chr2:28655509-28655309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):68, 134

               
               
               Conread position:59-253
               
               
               Cow position:chr2:46303042-46303237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:160
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):153, 52

               
               
               Conread position:60-256
               
               
               Cow position:chr2:39424840-39424641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):67, 129

               
               
               Conread position:60-256
               
               
               Cow position:chr2:52780182-52779987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):146, 69

               
               
               Conread position:63-256
               
               
               Cow position:chr2:63000834-63000638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):64, 126

               
               
               Conread position:65-256
               
               
               Cow position:chr2:46351168-46351362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:149
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):18, 72

               
               
               Conread position:72-271
               
               
               Cow position:chr2:72757447-72757248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:142
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):55, 120

               
               
               Conread position:75-256
               
               
               Cow position:chr2:72790679-72790864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:76-257
               
               
               Cow position:chr2:40249527-40249348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):50, 29

               
               
               Conread position:77-265
               
               
               Cow position:chr2:44987526-44987716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):49, 112

               
               
               Conread position:83-210
               
               
               Cow position:chr2:21189560-21189436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:101
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):44, 106

               
               
               Conread position:83-256
               
               
               Cow position:chr2:23995464-23995288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:89-256
               
               
               Cow position:chr2:20278769-20278939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):38, 101

               
               
               Conread position:90-256
               
               
               Cow position:chr2:24566892-24567060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):37, 79

               
               
               Conread position:96-256
               
               
               Cow position:chr2:25591143-25590980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:120
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:97-252
               
               
               Cow position:chr2:43756767-43756925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:126
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):30, 93

               
               
               Conread position:97-253
               
               
               Cow position:chr2:54346982-54346825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:120
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):30, 93

               
               
               Conread position:1-256
               
               
               Cow position:chr20:8970399-8970661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:191
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):10, 6

               
               
               Conread position:1-256
               
               
               Cow position:chr20:22209112-22208853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 185

               
               
               Conread position:1-256
               
               
               Cow position:chr20:22222113-22222373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:199
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):36, 191

               
               
               Conread position:1-266
               
               
               Cow position:chr20:19155672-19155940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):36, 166

               
               
               Conread position:2-184
               
               
               Cow position:chr20:11454113-11454297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:155
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-186
               
               
               Cow position:chr20:16526787-16526601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:149
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:2-234
               
               
               Cow position:chr20:14327126-14327360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):35, 93

               
               
               Conread position:2-239
               
               
               Cow position:chr20:34458780-34459024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:181
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-245
               
               
               Cow position:chr20:27876973-27876729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:194
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):35, 24

               
               
               Conread position:2-250
               
               
               Cow position:chr20:6135501-6135753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-252
               
               
               Cow position:chr20:13766381-13766128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 159

               
               
               Conread position:2-252
               
               
               Cow position:chr20:15295507-15295256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:191
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):124, 192

               
               
               Conread position:2-253
               
               
               Cow position:chr20:12826986-12827234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 130

               
               
               Conread position:2-253
               
               
               Cow position:chr20:13325584-13325345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:190
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):35, 96

               
               
               Conread position:2-253
               
               
               Cow position:chr20:35094029-35093773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:198
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):9, 194

               
               
               Conread position:2-256
               
               
               Cow position:chr20:753931-753673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr20:775148-774890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr20:826270-826012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr20:5503257-5503515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr20:6550508-6550766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 191

               
               
               Conread position:2-256
               
               
               Cow position:chr20:7995053-7995311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 191

               
               
               Conread position:2-256
               
               
               Cow position:chr20:9223342-9223084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr20:9339503-9339256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:194
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):35, 93

               
               
               Conread position:2-256
               
               
               Cow position:chr20:9589268-9589008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 187

               
               
               Conread position:2-256
               
               
               Cow position:chr20:10921436-10921691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:193
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 106

               
               
               Conread position:2-256
               
               
               Cow position:chr20:11331184-11331442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr20:11516547-11516807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:189
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):33, 24

               
               
               Conread position:2-256
               
               
               Cow position:chr20:12177000-12177258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr20:12434910-12435167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 185

               
               
               Conread position:2-256
               
               
               Cow position:chr20:13303808-13304066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr20:14925152-14925410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr20:15089882-15090140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr20:15527235-15526977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:192
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr20:15780707-15780968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 148

               
               
               Conread position:2-256
               
               
               Cow position:chr20:16106938-16106680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr20:16515813-16515555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr20:16559042-16559300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr20:20364255-20364510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):125, 140

               
               
               Conread position:2-256
               
               
               Cow position:chr20:20439479-20439737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr20:21398307-21398051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 215

               
               
               Conread position:2-256
               
               
               Cow position:chr20:22048856-22048598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr20:22060687-22060945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr20:23802640-23802382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr20:24567782-24568037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 128

               
               
               Conread position:2-256
               
               
               Cow position:chr20:26052863-26053121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr20:26738267-26738009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr20:28443859-28444115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:191
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr20:28560404-28560653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 172

               
               
               Conread position:2-256
               
               
               Cow position:chr20:28725248-28724989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 59

               
               
               Conread position:2-256
               
               
               Cow position:chr20:29370931-29371189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr20:30146921-30146667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 119

               
               
               Conread position:2-256
               
               
               Cow position:chr20:30431769-30431503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:199
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):35, 197

               
               
               Conread position:2-256
               
               
               Cow position:chr20:30479599-30479340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 193

               
               
               Conread position:2-256
               
               
               Cow position:chr20:31504823-31504562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 192

               
               
               Conread position:2-256
               
               
               Cow position:chr20:33731243-33730988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr20:35159101-35159353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:189
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):35, 125

               
               
               Conread position:2-256
               
               
               Cow position:chr20:36418234-36418487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:172
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):33, 7

               
               
               Conread position:2-256
               
               
               Cow position:chr20:38000967-38000722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:187
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):33, 56

               
               
               Conread position:2-258
               
               
               Cow position:chr20:30384755-30385013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 14

               
               
               Conread position:2-265
               
               
               Cow position:chr20:8445902-8445637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 190

               
               
               Conread position:2-265
               
               
               Cow position:chr20:19845265-19845000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 256

               
               
               Conread position:2-265
               
               
               Cow position:chr20:22185524-22185788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:197
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):35, 154

               
               
               Conread position:2-265
               
               
               Cow position:chr20:28165332-28165072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:202
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):35, 127

               
               
               Conread position:2-265
               
               
               Cow position:chr20:37154476-37154743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-270
               
               
               Cow position:chr20:6239651-6239918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 125

               
               
               Conread position:2-270
               
               
               Cow position:chr20:32352085-32351816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:199
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):35, 63

               
               
               Conread position:2-302
               
               
               Cow position:chr20:34643499-34643196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 125

               
               
               Conread position:3-187
               
               
               Cow position:chr20:19146117-19145935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):34, 47

               
               
               Conread position:3-239
               
               
               Cow position:chr20:28294808-28294570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:187
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 36

               
               
               Conread position:3-242
               
               
               Cow position:chr20:6055242-6055478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:181
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):35, 117

               
               
               Conread position:3-252
               
               
               Cow position:chr20:7597369-7597621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 187

               
               
               Conread position:3-253
               
               
               Cow position:chr20:30689362-30689111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 72

               
               
               Conread position:3-253
               
               
               Cow position:chr20:32164616-32164869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:192
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 65

               
               
               Conread position:3-256
               
               
               Cow position:chr20:5085848-5086105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 188

               
               
               Conread position:3-256
               
               
               Cow position:chr20:12047968-12047725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):34, 128

               
               
               Conread position:3-256
               
               
               Cow position:chr20:13955113-13954856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:186
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):35, 187

               
               
               Conread position:3-256
               
               
               Cow position:chr20:15068306-15068046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:197
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):35, 78

               
               
               Conread position:3-256
               
               
               Cow position:chr20:19017923-19018172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 109

               
               
               Conread position:3-256
               
               
               Cow position:chr20:23466160-23466418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 190

               
               
               Conread position:3-256
               
               
               Cow position:chr20:26999984-26999728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:196
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):34, 189

               
               
               Conread position:3-256
               
               
               Cow position:chr20:32084951-32085222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):34, 154

               
               
               Conread position:3-256
               
               
               Cow position:chr20:40256151-40255895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 157

               
               
               Conread position:3-257
               
               
               Cow position:chr20:7568484-7568733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:189
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):34, 55

               
               
               Conread position:3-257
               
               
               Cow position:chr20:7592970-7593220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:190
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):34, 97

               
               
               Conread position:3-265
               
               
               Cow position:chr20:12333164-12332907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):33, 49

               
               
               Conread position:3-265
               
               
               Cow position:chr20:14756767-14757046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:210
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):53, 197

               
               
               Conread position:3-265
               
               
               Cow position:chr20:20731747-20731482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 256

               
               
               Conread position:3-265
               
               
               Cow position:chr20:31846339-31846603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 241

               
               
               Conread position:3-266
               
               
               Cow position:chr20:29806445-29806721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:207
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):35, 50

               
               
               Conread position:3-267
               
               
               Cow position:chr20:10686218-10685952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):34, 140

               
               
               Conread position:4-238
               
               
               Cow position:chr20:34597872-34598109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:177
               
               
               Alignm E-value:8.96831e-44
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:4-256
               
               
               Cow position:chr20:12567832-12568084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 59

               
               
               Conread position:4-256
               
               
               Cow position:chr20:18092414-18092669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:191
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 85

               
               
               Conread position:4-256
               
               
               Cow position:chr20:37271758-37271503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 191

               
               
               Conread position:4-283
               
               
               Cow position:chr20:10035262-10035537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):33, 44

               
               
               Conread position:8-252
               
               
               Cow position:chr20:13050074-13050320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:192
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):29, 50

               
               
               Conread position:8-256
               
               
               Cow position:chr20:33246827-33247073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 119

               
               
               Conread position:9-253
               
               
               Cow position:chr20:21720039-21719792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:193
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):28, 107

               
               
               Conread position:9-257
               
               
               Cow position:chr20:20935654-20935899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 118

               
               
               Conread position:10-187
               
               
               Cow position:chr20:14836669-14836490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:12-265
               
               
               Cow position:chr20:9536375-9536126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 119

               
               
               Conread position:13-256
               
               
               Cow position:chr20:5269555-5269799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:192
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 119

               
               
               Conread position:14-155
               
               
               Cow position:chr20:29318694-29318560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:14-256
               
               
               Cow position:chr20:5958667-5958913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:191
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 179

               
               
               Conread position:14-265
               
               
               Cow position:chr20:34968461-34968206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 178

               
               
               Conread position:15-181
               
               
               Cow position:chr20:21338628-21338793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):23, 43

               
               
               Conread position:15-256
               
               
               Cow position:chr20:9997013-9996766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:180
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:15-256
               
               
               Cow position:chr20:18490425-18490181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):20, 46

               
               
               Conread position:15-256
               
               
               Cow position:chr20:24399388-24399633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 178

               
               
               Conread position:16-256
               
               
               Cow position:chr20:3808297-3808541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:186
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:16-256
               
               
               Cow position:chr20:41110946-41111189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):21, 149

               
               
               Conread position:17-189
               
               
               Cow position:chr20:18322089-18322256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):110, 20

               
               
               Conread position:17-249
               
               
               Cow position:chr20:17668220-17667980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:170
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):20, 147

               
               
               Conread position:17-256
               
               
               Cow position:chr20:6053877-6054123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):20, 138

               
               
               Conread position:18-256
               
               
               Cow position:chr20:13653866-13654102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:187
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):18, 74

               
               
               Conread position:18-256
               
               
               Cow position:chr20:30579337-30579095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:192
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 171

               
               
               Conread position:18-256
               
               
               Cow position:chr20:35112503-35112263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):17, 55

               
               
               Conread position:21-256
               
               
               Cow position:chr20:13660874-13661113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:162
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):16, 154

               
               
               Conread position:25-253
               
               
               Cow position:chr20:28887841-28887607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:168
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):14, 164

               
               
               Conread position:35-256
               
               
               Cow position:chr20:20092756-20092531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:174
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):66, 156

               
               
               Conread position:46-256
               
               
               Cow position:chr20:33181049-33181266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:163
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):21, 44

               
               
               Conread position:59-256
               
               
               Cow position:chr20:10790886-10790688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):153, 109

               
               
               Conread position:68-265
               
               
               Cow position:chr20:7810419-7810616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:159
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):58, 121

               
               
               Conread position:81-250
               
               
               Cow position:chr20:38957548-38957376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:83-256
               
               
               Cow position:chr20:39234639-39234463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):44, 106

               
               
               Conread position:89-252
               
               
               Cow position:chr20:25845226-25845387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):37, 15

               
               
               Conread position:96-253
               
               
               Cow position:chr20:32639406-32639245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:125
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:97-256
               
               
               Cow position:chr20:30737668-30737506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:131
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):30, 93

               
               
               Conread position:97-265
               
               
               Cow position:chr20:14741580-14741411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:129
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):29, 60

               
               
               Conread position:102-256
               
               
               Cow position:chr20:28282455-28282301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):24, 59

               
               
               Conread position:110-272
               
               
               Cow position:chr20:5538553-5538389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):16, 75

               
               
               Conread position:1-253
               
               
               Cow position:chr21:19627107-19627363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 189

               
               
               Conread position:1-256
               
               
               Cow position:chr21:1196137-1195880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 12

               
               
               Conread position:1-256
               
               
               Cow position:chr21:4586077-4586336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 232

               
               
               Conread position:1-256
               
               
               Cow position:chr21:8071499-8071755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:1-270
               
               
               Cow position:chr21:5009869-5010142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 226

               
               
               Conread position:1-272
               
               
               Cow position:chr21:26699069-26699348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:215
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):34, 13

               
               
               Conread position:2-183
               
               
               Cow position:chr21:42558374-42558191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:149
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-186
               
               
               Cow position:chr21:26628368-26628182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:152
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-187
               
               
               Cow position:chr21:9208909-9208726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):35, 107

               
               
               Conread position:2-210
               
               
               Cow position:chr21:36892632-36892838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:167
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-210
               
               
               Cow position:chr21:47532333-47532128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):35, 7

               
               
               Conread position:2-239
               
               
               Cow position:chr21:4079621-4079383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:190
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):210, 186

               
               
               Conread position:2-246
               
               
               Cow position:chr21:23329743-23329990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-250
               
               
               Cow position:chr21:27065999-27066251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:191
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-250
               
               
               Cow position:chr21:48530771-48530516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:206
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):33, 147

               
               
               Conread position:2-252
               
               
               Cow position:chr21:33316766-33317020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 189

               
               
               Conread position:2-253
               
               
               Cow position:chr21:17144288-17144033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-253
               
               
               Cow position:chr21:27147952-27148207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-253
               
               
               Cow position:chr21:33934314-33934560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):26, 90

               
               
               Conread position:2-256
               
               
               Cow position:chr21:43301-43058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:197
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):35, 7

               
               
               Conread position:2-256
               
               
               Cow position:chr21:149747-149489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 184

               
               
               Conread position:2-256
               
               
               Cow position:chr21:2768243-2768501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):35, 90

               
               
               Conread position:2-256
               
               
               Cow position:chr21:3766170-3766428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr21:3782372-3782115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 45

               
               
               Conread position:2-256
               
               
               Cow position:chr21:4719220-4719478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr21:4812744-4812995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:192
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):35, 125

               
               
               Conread position:2-256
               
               
               Cow position:chr21:4898364-4898622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr21:5642237-5642494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr21:6965872-6966130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr21:7047582-7047837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr21:10570887-10570629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr21:10853865-10853607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr21:11144250-11144508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr21:14534213-14533955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr21:16890240-16890500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:193
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr21:23341251-23340993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr21:24887244-24886992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:184
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):34, 195

               
               
               Conread position:2-256
               
               
               Cow position:chr21:25190252-25189992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:200
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):30, 192

               
               
               Conread position:2-256
               
               
               Cow position:chr21:25987014-25986759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):189, 230

               
               
               Conread position:2-256
               
               
               Cow position:chr21:26400169-26400422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:195
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):35, 148

               
               
               Conread position:2-256
               
               
               Cow position:chr21:26633630-26633887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr21:26757123-26757381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:190
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr21:26875191-26874934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 114

               
               
               Conread position:2-256
               
               
               Cow position:chr21:27287576-27287321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 184

               
               
               Conread position:2-256
               
               
               Cow position:chr21:27375706-27375448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 192

               
               
               Conread position:2-256
               
               
               Cow position:chr21:27608102-27608358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 184

               
               
               Conread position:2-256
               
               
               Cow position:chr21:27619911-27620158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:186
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):125, 26

               
               
               Conread position:2-256
               
               
               Cow position:chr21:28915376-28915633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 88

               
               
               Conread position:2-256
               
               
               Cow position:chr21:29500138-29499880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr21:30565345-30565096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 171

               
               
               Conread position:2-256
               
               
               Cow position:chr21:30595490-30595748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr21:30627483-30627737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):35, 64

               
               
               Conread position:2-256
               
               
               Cow position:chr21:30966343-30966601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr21:31512671-31512928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 106

               
               
               Conread position:2-256
               
               
               Cow position:chr21:32237939-32237681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr21:32773535-32773277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr21:33832376-33832637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:190
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr21:34823776-34823518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr21:34900074-34900332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr21:36376581-36376332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:195
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):35, 61

               
               
               Conread position:2-256
               
               
               Cow position:chr21:36506239-36506496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 95

               
               
               Conread position:2-256
               
               
               Cow position:chr21:37923776-37923529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:194
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):35, 153

               
               
               Conread position:2-256
               
               
               Cow position:chr21:38866012-38866270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr21:39059730-39059977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:204
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):36, 11

               
               
               Conread position:2-256
               
               
               Cow position:chr21:39417675-39417419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:192
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):34, 107

               
               
               Conread position:2-256
               
               
               Cow position:chr21:39429002-39428744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr21:41796125-41796379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 119

               
               
               Conread position:2-256
               
               
               Cow position:chr21:42917393-42917135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr21:47428943-47428685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):30, 192

               
               
               Conread position:2-256
               
               
               Cow position:chr21:47648942-47648682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 66

               
               
               Conread position:2-256
               
               
               Cow position:chr21:48273597-48273855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr21:49655583-49655841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 161

               
               
               Conread position:2-257
               
               
               Cow position:chr21:2537559-2537816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):35, 61

               
               
               Conread position:2-257
               
               
               Cow position:chr21:28881268-28881014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):41, 191

               
               
               Conread position:2-257
               
               
               Cow position:chr21:33728707-33728449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 183

               
               
               Conread position:2-257
               
               
               Cow position:chr21:43403838-43404096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 144

               
               
               Conread position:2-265
               
               
               Cow position:chr21:45302-45037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:195
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):124, 91

               
               
               Conread position:2-265
               
               
               Cow position:chr21:2878240-2878503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 191

               
               
               Conread position:2-265
               
               
               Cow position:chr21:19351261-19351527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-265
               
               
               Cow position:chr21:20244000-20244266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 185

               
               
               Conread position:2-265
               
               
               Cow position:chr21:28259261-28259004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:191
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):33, 113

               
               
               Conread position:2-265
               
               
               Cow position:chr21:33257156-33256890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 257

               
               
               Conread position:2-265
               
               
               Cow position:chr21:33709900-33710165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 190

               
               
               Conread position:2-265
               
               
               Cow position:chr21:47977867-47977601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 191

               
               
               Conread position:2-270
               
               
               Cow position:chr21:36534608-36534882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 270

               
               
               Conread position:2-271
               
               
               Cow position:chr21:39470164-39470435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:3-164
               
               
               Cow position:chr21:21216876-21217037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):34, 110

               
               
               Conread position:3-189
               
               
               Cow position:chr21:13704412-13704600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:3-190
               
               
               Cow position:chr21:1058061-1057872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:155
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:3-190
               
               
               Cow position:chr21:28810988-28811173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:145
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):34, 118

               
               
               Conread position:3-210
               
               
               Cow position:chr21:18819034-18819242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:163
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):34, 82

               
               
               Conread position:3-253
               
               
               Cow position:chr21:6765424-6765680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 109

               
               
               Conread position:3-253
               
               
               Cow position:chr21:17478670-17478421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):124, 183

               
               
               Conread position:3-253
               
               
               Cow position:chr21:18931773-18931524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:188
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):123, 186

               
               
               Conread position:3-253
               
               
               Cow position:chr21:22316123-22315876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:189
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):122, 81

               
               
               Conread position:3-253
               
               
               Cow position:chr21:31275941-31275689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:185
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):34, 114

               
               
               Conread position:3-256
               
               
               Cow position:chr21:2905194-2905447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:185
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):34, 101

               
               
               Conread position:3-256
               
               
               Cow position:chr21:4189141-4188879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:203
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):33, 193

               
               
               Conread position:3-256
               
               
               Cow position:chr21:9895956-9895704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 140

               
               
               Conread position:3-256
               
               
               Cow position:chr21:11509540-11509283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 187

               
               
               Conread position:3-256
               
               
               Cow position:chr21:13302794-13302548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:191
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):34, 49

               
               
               Conread position:3-256
               
               
               Cow position:chr21:18285404-18285148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 5

               
               
               Conread position:3-256
               
               
               Cow position:chr21:20910832-20911083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):34, 73

               
               
               Conread position:3-256
               
               
               Cow position:chr21:22719502-22719755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):35, 54

               
               
               Conread position:3-256
               
               
               Cow position:chr21:28598189-28597934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:197
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):34, 129

               
               
               Conread position:3-256
               
               
               Cow position:chr21:29423660-29423405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:192
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 192

               
               
               Conread position:3-270
               
               
               Cow position:chr21:12153417-12153150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:205
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):123, 32

               
               
               Conread position:3-270
               
               
               Cow position:chr21:34657589-34657323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 139

               
               
               Conread position:3-270
               
               
               Cow position:chr21:37298739-37298472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:205
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):34, 190

               
               
               Conread position:3-271
               
               
               Cow position:chr21:470892-470621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):40, 110

               
               
               Conread position:3-272
               
               
               Cow position:chr21:15546094-15546365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 76

               
               
               Conread position:3-302
               
               
               Cow position:chr21:2419793-2419490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 79

               
               
               Conread position:3-405
               
               
               Cow position:chr21:28476892-28476490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 33

               
               
               Conread position:4-247
               
               
               Cow position:chr21:17418039-17418286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):20, 5

               
               
               Conread position:4-249
               
               
               Cow position:chr21:17413012-17413257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:179
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):55, 39

               
               
               Conread position:4-256
               
               
               Cow position:chr21:6623411-6623156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 156

               
               
               Conread position:4-256
               
               
               Cow position:chr21:32534419-32534171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 139

               
               
               Conread position:4-258
               
               
               Cow position:chr21:36163688-36163949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):159, 0

               
               
               Conread position:5-187
               
               
               Cow position:chr21:1284350-1284533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:147
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):32, 146

               
               
               Conread position:5-247
               
               
               Cow position:chr21:48234723-48234952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:176
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):32, 49

               
               
               Conread position:8-270
               
               
               Cow position:chr21:16277995-16277731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 13

               
               
               Conread position:9-252
               
               
               Cow position:chr21:15274933-15274688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:167
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):26, 153

               
               
               Conread position:9-256
               
               
               Cow position:chr21:2514444-2514193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 182

               
               
               Conread position:9-256
               
               
               Cow position:chr21:5020739-5020488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 181

               
               
               Conread position:9-256
               
               
               Cow position:chr21:11405287-11405538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 181

               
               
               Conread position:9-256
               
               
               Cow position:chr21:32396433-32396682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:187
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:10-256
               
               
               Cow position:chr21:13300411-13300171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:191
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):27, 94

               
               
               Conread position:12-252
               
               
               Cow position:chr21:27125128-27125372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:188
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):25, 178

               
               
               Conread position:14-258
               
               
               Cow position:chr21:4035692-4035921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:182
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):23, 139

               
               
               Conread position:15-256
               
               
               Cow position:chr21:25598260-25598015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:185
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:15-265
               
               
               Cow position:chr21:48291768-48292017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):22, 136

               
               
               Conread position:17-252
               
               
               Cow position:chr21:45782147-45782379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):20, 124

               
               
               Conread position:18-187
               
               
               Cow position:chr21:13090206-13090368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):19, 103

               
               
               Conread position:18-210
               
               
               Cow position:chr21:36892872-36893063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):5, 173

               
               
               Conread position:18-253
               
               
               Cow position:chr21:17415255-17415488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):116, 51

               
               
               Conread position:18-256
               
               
               Cow position:chr21:32203816-32203582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):18, 48

               
               
               Conread position:18-257
               
               
               Cow position:chr21:46974149-46974389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 99

               
               
               Conread position:28-256
               
               
               Cow position:chr21:13315016-13314792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:182
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):182, 6

               
               
               Conread position:33-265
               
               
               Cow position:chr21:3804213-3804446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:175
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):93, 109

               
               
               Conread position:34-256
               
               
               Cow position:chr21:2664598-2664823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:171
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):94, 154

               
               
               Conread position:35-256
               
               
               Cow position:chr21:19099013-19098792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 126

               
               
               Conread position:36-256
               
               
               Cow position:chr21:3046900-3046681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:165
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):90, 20

               
               
               Conread position:38-256
               
               
               Cow position:chr21:8617645-8617856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):89, 108

               
               
               Conread position:49-256
               
               
               Cow position:chr21:34684597-34684391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:166
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):163, 71

               
               
               Conread position:58-272
               
               
               Cow position:chr21:7155929-7155716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):69, 148

               
               
               Conread position:59-256
               
               
               Cow position:chr21:34255036-34255236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:146
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):37, 111

               
               
               Conread position:70-265
               
               
               Cow position:chr21:33965188-33965385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:153
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):56, 188

               
               
               Conread position:81-256
               
               
               Cow position:chr21:15398651-15398475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:145
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):131, 13

               
               
               Conread position:81-256
               
               
               Cow position:chr21:34180578-34180755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):128, 107

               
               
               Conread position:104-256
               
               
               Cow position:chr21:449666-449510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:124
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):24, 86

               
               
               Conread position:108-256
               
               
               Cow position:chr21:48638777-48638929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):19, 78

               
               
               Conread position:1-185
               
               
               Cow position:chr22:45106699-45106884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:155
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 157

               
               
               Conread position:1-249
               
               
               Cow position:chr22:25340580-25340329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 62

               
               
               Conread position:1-253
               
               
               Cow position:chr22:9728555-9728801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:192
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):36, 68

               
               
               Conread position:1-256
               
               
               Cow position:chr22:11036903-11036657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 182

               
               
               Conread position:1-256
               
               
               Cow position:chr22:18603383-18603642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:1-256
               
               
               Cow position:chr22:30675300-30675558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):126, 188

               
               
               Conread position:2-186
               
               
               Cow position:chr22:34901290-34901106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:153
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):36, 114

               
               
               Conread position:2-189
               
               
               Cow position:chr22:18191957-18191768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:155
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):34, 30

               
               
               Conread position:2-209
               
               
               Cow position:chr22:1522046-1522252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):34, 185

               
               
               Conread position:2-210
               
               
               Cow position:chr22:9285315-9285521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-210
               
               
               Cow position:chr22:13552783-13552577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:163
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-210
               
               
               Cow position:chr22:22048773-22048979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:165
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-210
               
               
               Cow position:chr22:28714326-28714120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:164
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-246
               
               
               Cow position:chr22:981749-981501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:186
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-250
               
               
               Cow position:chr22:16203224-16202976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:191
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):34, 189

               
               
               Conread position:2-250
               
               
               Cow position:chr22:36188479-36188226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-251
               
               
               Cow position:chr22:35934540-35934794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:188
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-252
               
               
               Cow position:chr22:8773578-8773833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-252
               
               
               Cow position:chr22:26104712-26104966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-252
               
               
               Cow position:chr22:39465114-39465368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:194
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):35, 187

               
               
               Conread position:2-252
               
               
               Cow position:chr22:40828640-40828895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 190

               
               
               Conread position:2-253
               
               
               Cow position:chr22:540562-540306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:197
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-253
               
               
               Cow position:chr22:19600374-19600630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:190
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):35, 171

               
               
               Conread position:2-253
               
               
               Cow position:chr22:33901876-33902131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 185

               
               
               Conread position:2-256
               
               
               Cow position:chr22:51937-51681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 73

               
               
               Conread position:2-256
               
               
               Cow position:chr22:697359-697101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr22:1517614-1517873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 190

               
               
               Conread position:2-256
               
               
               Cow position:chr22:2561036-2561301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:189
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):35, 65

               
               
               Conread position:2-256
               
               
               Cow position:chr22:3012144-3011901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:189
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):35, 174

               
               
               Conread position:2-256
               
               
               Cow position:chr22:3274930-3275188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr22:3433536-3433794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:193
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr22:7156079-7155827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 119

               
               
               Conread position:2-256
               
               
               Cow position:chr22:8299566-8299315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:197
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):125, 35

               
               
               Conread position:2-256
               
               
               Cow position:chr22:8776291-8776549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:196
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr22:10550293-10550035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr22:10577061-10577319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr22:10906783-10907036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:198
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):35, 64

               
               
               Conread position:2-256
               
               
               Cow position:chr22:11754226-11754473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:189
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):124, 46

               
               
               Conread position:2-256
               
               
               Cow position:chr22:12225477-12225727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:199
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):35, 50

               
               
               Conread position:2-256
               
               
               Cow position:chr22:13696495-13696752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 56

               
               
               Conread position:2-256
               
               
               Cow position:chr22:13897064-13896810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:195
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):15, 100

               
               
               Conread position:2-256
               
               
               Cow position:chr22:14807681-14807431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 186

               
               
               Conread position:2-256
               
               
               Cow position:chr22:15013266-15013520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:199
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):35, 89

               
               
               Conread position:2-256
               
               
               Cow position:chr22:15174645-15174903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr22:15308535-15308794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr22:18807807-18808063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:189
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):35, 161

               
               
               Conread position:2-256
               
               
               Cow position:chr22:18811488-18811744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:189
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):35, 161

               
               
               Conread position:2-256
               
               
               Cow position:chr22:19140279-19140536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 158

               
               
               Conread position:2-256
               
               
               Cow position:chr22:19822619-19822360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr22:20237147-20237405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 187

               
               
               Conread position:2-256
               
               
               Cow position:chr22:20569615-20569872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 149

               
               
               Conread position:2-256
               
               
               Cow position:chr22:22107469-22107212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 6

               
               
               Conread position:2-256
               
               
               Cow position:chr22:22607585-22607327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr22:25241105-25241357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:188
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):35, 91

               
               
               Conread position:2-256
               
               
               Cow position:chr22:25336578-25336320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr22:25968241-25968491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:191
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):124, 38

               
               
               Conread position:2-256
               
               
               Cow position:chr22:26089809-26090067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr22:27306537-27306795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr22:28785538-28785288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:204
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):36, 47

               
               
               Conread position:2-256
               
               
               Cow position:chr22:29012591-29012332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):41, 146

               
               
               Conread position:2-256
               
               
               Cow position:chr22:29397511-29397253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 187

               
               
               Conread position:2-256
               
               
               Cow position:chr22:29464318-29464060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr22:29855276-29855018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr22:31315970-31315712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr22:31331445-31331703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr22:32210039-32209780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 190

               
               
               Conread position:2-256
               
               
               Cow position:chr22:32811784-32812042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 187

               
               
               Conread position:2-256
               
               
               Cow position:chr22:32943875-32943617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr22:33951532-33951783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 184

               
               
               Conread position:2-256
               
               
               Cow position:chr22:34171877-34171619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr22:34758634-34758894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 186

               
               
               Conread position:2-256
               
               
               Cow position:chr22:39473185-39473449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:198
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr22:39902808-39902550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr22:41846142-41846396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 191

               
               
               Conread position:2-256
               
               
               Cow position:chr22:44365783-44366041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr22:44382152-44381894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr22:44462725-44462467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:197
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):35, 185

               
               
               Conread position:2-256
               
               
               Cow position:chr22:44924904-44925157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:187
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):36, 129

               
               
               Conread position:2-257
               
               
               Cow position:chr22:21592850-21592591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 183

               
               
               Conread position:2-257
               
               
               Cow position:chr22:37290427-37290674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 93

               
               
               Conread position:2-264
               
               
               Cow position:chr22:45013554-45013811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:202
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):124, 34

               
               
               Conread position:2-265
               
               
               Cow position:chr22:1036306-1036040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 185

               
               
               Conread position:2-265
               
               
               Cow position:chr22:46578277-46578543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:197
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):26, 65

               
               
               Conread position:2-270
               
               
               Cow position:chr22:3488909-3489184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-270
               
               
               Cow position:chr22:5315668-5315395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 267

               
               
               Conread position:2-272
               
               
               Cow position:chr22:17325075-17325352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:3-184
               
               
               Cow position:chr22:2531677-2531856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):41, 88

               
               
               Conread position:3-186
               
               
               Cow position:chr22:11767414-11767579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):34, 51

               
               
               Conread position:3-246
               
               
               Cow position:chr22:5835972-5835734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:191
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 54

               
               
               Conread position:3-248
               
               
               Cow position:chr22:36572114-36572358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:178
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):34, 212

               
               
               Conread position:3-248
               
               
               Cow position:chr22:36584208-36584452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):34, 91

               
               
               Conread position:3-251
               
               
               Cow position:chr22:13775919-13775673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 88

               
               
               Conread position:3-252
               
               
               Cow position:chr22:14510091-14510344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:187
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):34, 158

               
               
               Conread position:3-253
               
               
               Cow position:chr22:699371-699117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 187

               
               
               Conread position:3-253
               
               
               Cow position:chr22:15057695-15057453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):33, 105

               
               
               Conread position:3-253
               
               
               Cow position:chr22:15858204-15857949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 185

               
               
               Conread position:3-253
               
               
               Cow position:chr22:33448878-33449113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:196
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):35, 15

               
               
               Conread position:3-253
               
               
               Cow position:chr22:43789153-43788900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:185
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:3-255
               
               
               Cow position:chr22:43045288-43045543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):34, 87

               
               
               Conread position:3-256
               
               
               Cow position:chr22:533526-533270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 189

               
               
               Conread position:3-256
               
               
               Cow position:chr22:2415324-2415066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:187
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:3-256
               
               
               Cow position:chr22:5015515-5015256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 190

               
               
               Conread position:3-256
               
               
               Cow position:chr22:8339844-8339586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 188

               
               
               Conread position:3-256
               
               
               Cow position:chr22:8881566-8881315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 58

               
               
               Conread position:3-256
               
               
               Cow position:chr22:10330567-10330329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):34, 56

               
               
               Conread position:3-256
               
               
               Cow position:chr22:10361349-10361094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 192

               
               
               Conread position:3-256
               
               
               Cow position:chr22:10602276-10602024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:196
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):29, 41

               
               
               Conread position:3-256
               
               
               Cow position:chr22:11779346-11779598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):86, 159

               
               
               Conread position:3-256
               
               
               Cow position:chr22:12728237-12728492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 19

               
               
               Conread position:3-256
               
               
               Cow position:chr22:12869031-12869287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:3-256
               
               
               Cow position:chr22:13209806-13209551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:178
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):31, 59

               
               
               Conread position:3-256
               
               
               Cow position:chr22:19048350-19048602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:191
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):30, 61

               
               
               Conread position:3-256
               
               
               Cow position:chr22:23864235-23863983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 124

               
               
               Conread position:3-256
               
               
               Cow position:chr22:24817337-24817592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 248

               
               
               Conread position:3-256
               
               
               Cow position:chr22:26759386-26759134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):34, 128

               
               
               Conread position:3-256
               
               
               Cow position:chr22:30514468-30514212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):34, 18

               
               
               Conread position:3-256
               
               
               Cow position:chr22:30918508-30918259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:188
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):124, 71

               
               
               Conread position:3-256
               
               
               Cow position:chr22:30963325-30963070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 63

               
               
               Conread position:3-256
               
               
               Cow position:chr22:32660701-32660451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 144

               
               
               Conread position:3-256
               
               
               Cow position:chr22:36357482-36357226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:171
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):34, 44

               
               
               Conread position:3-256
               
               
               Cow position:chr22:45281373-45281118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:196
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):34, 58

               
               
               Conread position:3-256
               
               
               Cow position:chr22:46033651-46033395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):34, 87

               
               
               Conread position:3-257
               
               
               Cow position:chr22:32019136-32019391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):34, 129

               
               
               Conread position:3-258
               
               
               Cow position:chr22:33093764-33093516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 187

               
               
               Conread position:3-261
               
               
               Cow position:chr22:43261290-43261029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:192
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:3-267
               
               
               Cow position:chr22:1310517-1310780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:206
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):34, 188

               
               
               Conread position:3-270
               
               
               Cow position:chr22:40373811-40373547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:195
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):34, 49

               
               
               Conread position:3-272
               
               
               Cow position:chr22:46611606-46611870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:200
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):34, 41

               
               
               Conread position:4-188
               
               
               Cow position:chr22:37032453-37032636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):33, 117

               
               
               Conread position:4-251
               
               
               Cow position:chr22:47957842-47958086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:184
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):122, 42

               
               
               Conread position:4-256
               
               
               Cow position:chr22:6340077-6339823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 152

               
               
               Conread position:4-256
               
               
               Cow position:chr22:9269624-9269367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:190
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):33, 187

               
               
               Conread position:4-256
               
               
               Cow position:chr22:14817224-14817471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):32, 46

               
               
               Conread position:4-275
               
               
               Cow position:chr22:44099643-44099913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 186

               
               
               Conread position:8-253
               
               
               Cow position:chr22:15953586-15953828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:188
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):28, 71

               
               
               Conread position:8-265
               
               
               Cow position:chr22:18233293-18233035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):118, 94

               
               
               Conread position:9-190
               
               
               Cow position:chr22:20087786-20087605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):28, 39

               
               
               Conread position:9-252
               
               
               Cow position:chr22:36785119-36784887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:185
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):28, 112

               
               
               Conread position:9-256
               
               
               Cow position:chr22:11260320-11260561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:174
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):27, 41

               
               
               Conread position:9-256
               
               
               Cow position:chr22:12968986-12969235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:189
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 59

               
               
               Conread position:9-256
               
               
               Cow position:chr22:13721318-13721562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 53

               
               
               Conread position:9-256
               
               
               Cow position:chr22:38553653-38553405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 120

               
               
               Conread position:9-257
               
               
               Cow position:chr22:9371777-9371526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 180

               
               
               Conread position:9-270
               
               
               Cow position:chr22:40386053-40385791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:205
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):113, 52

               
               
               Conread position:10-250
               
               
               Cow position:chr22:18122374-18122603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):27, 72

               
               
               Conread position:13-256
               
               
               Cow position:chr22:41946301-41946547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:193
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 62

               
               
               Conread position:13-272
               
               
               Cow position:chr22:35903804-35904058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:201
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):24, 128

               
               
               Conread position:14-256
               
               
               Cow position:chr22:42994588-42994342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 177

               
               
               Conread position:14-265
               
               
               Cow position:chr22:37535925-37536170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):23, 86

               
               
               Conread position:15-193
               
               
               Cow position:chr22:865317-865494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:138
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):22, 12

               
               
               Conread position:15-210
               
               
               Cow position:chr22:31645521-31645333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:157
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):12, 107

               
               
               Conread position:15-247
               
               
               Cow position:chr22:24186441-24186208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:185
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):22, 124

               
               
               Conread position:15-256
               
               
               Cow position:chr22:15920422-15920661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):22, 117

               
               
               Conread position:15-256
               
               
               Cow position:chr22:26243781-26243544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:162
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):111, 19

               
               
               Conread position:15-256
               
               
               Cow position:chr22:32220866-32220629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):23, 70

               
               
               Conread position:15-256
               
               
               Cow position:chr22:33200693-33200450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:186
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):22, 80

               
               
               Conread position:15-265
               
               
               Cow position:chr22:21192793-21193041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):22, 90

               
               
               Conread position:15-310
               
               
               Cow position:chr22:17781537-17781841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:215
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):112, 54

               
               
               Conread position:16-256
               
               
               Cow position:chr22:3065390-3065630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:186
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 146

               
               
               Conread position:17-256
               
               
               Cow position:chr22:5312335-5312578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:191
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 174

               
               
               Conread position:17-256
               
               
               Cow position:chr22:27223429-27223668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:168
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):12, 41

               
               
               Conread position:17-256
               
               
               Cow position:chr22:39443605-39443836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:184
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):20, 46

               
               
               Conread position:18-253
               
               
               Cow position:chr22:11838015-11838247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 98

               
               
               Conread position:18-256
               
               
               Cow position:chr22:11988294-11988537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:188
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:18-256
               
               
               Cow position:chr22:46568680-46568920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):108, 21

               
               
               Conread position:24-256
               
               
               Cow position:chr22:6202067-6202297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:188
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 97

               
               
               Conread position:26-256
               
               
               Cow position:chr22:35910085-35910319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:183
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 167

               
               
               Conread position:28-173
               
               
               Cow position:chr22:31871090-31871238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:34-256
               
               
               Cow position:chr22:46439931-46440148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:160
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):91, 22

               
               
               Conread position:36-262
               
               
               Cow position:chr22:15049346-15049134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:162
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):177, 94

               
               
               Conread position:48-257
               
               
               Cow position:chr22:43236217-43236005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:171
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):79, 144

               
               
               Conread position:50-256
               
               
               Cow position:chr22:4567474-4567280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:147
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):157, 53

               
               
               Conread position:57-185
               
               
               Cow position:chr22:1266722-1266849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:105
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):69, 59

               
               
               Conread position:57-253
               
               
               Cow position:chr22:18195067-18194870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:164
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):69, 129

               
               
               Conread position:58-272
               
               
               Cow position:chr22:1280291-1280500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):136, 8

               
               
               Conread position:59-256
               
               
               Cow position:chr22:3714134-3714334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):68, 130

               
               
               Conread position:63-283
               
               
               Cow position:chr22:42500001-42500226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:173
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):63, 208

               
               
               Conread position:65-256
               
               
               Cow position:chr22:557340-557533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):64, 125

               
               
               Conread position:69-256
               
               
               Cow position:chr22:8480576-8480387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:69-256
               
               
               Cow position:chr22:8504821-8504632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:135
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:70-256
               
               
               Cow position:chr22:37270449-37270265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:146
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):136, 58

               
               
               Conread position:70-256
               
               
               Cow position:chr22:40326650-40326464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:140
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):121, 50

               
               
               Conread position:70-256
               
               
               Cow position:chr22:46022278-46022090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):9, 125

               
               
               Conread position:74-237
               
               
               Cow position:chr22:9355525-9355359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:132
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):53, 115

               
               
               Conread position:74-256
               
               
               Cow position:chr22:31312156-31311976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:132
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):53, 77

               
               
               Conread position:74-272
               
               
               Cow position:chr22:11698254-11698452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:157
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):52, 76

               
               
               Conread position:85-257
               
               
               Cow position:chr22:323830-324000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:131
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):41, 119

               
               
               Conread position:273-397
               
               
               Cow position:chr22:18808217-18808093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:101
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:273-397
               
               
               Cow position:chr22:18811898-18811774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:101
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-183
               
               
               Cow position:chr23:40553701-40553885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:151
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:1-256
               
               
               Cow position:chr23:14970533-14970789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 60

               
               
               Conread position:1-256
               
               
               Cow position:chr23:15180379-15180121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 61

               
               
               Conread position:1-256
               
               
               Cow position:chr23:31704316-31704057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 190

               
               
               Conread position:2-187
               
               
               Cow position:chr23:4266856-4266669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-220
               
               
               Cow position:chr23:29446529-29446744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):35, 132

               
               
               Conread position:2-235
               
               
               Cow position:chr23:24098548-24098311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:179
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-249
               
               
               Cow position:chr23:20152800-20153052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:2-250
               
               
               Cow position:chr23:28306265-28306010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:194
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):35, 93

               
               
               Conread position:2-252
               
               
               Cow position:chr23:11782206-11781951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 191

               
               
               Conread position:2-252
               
               
               Cow position:chr23:32007973-32008210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):35, 80

               
               
               Conread position:2-253
               
               
               Cow position:chr23:9193483-9193729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):35, 83

               
               
               Conread position:2-256
               
               
               Cow position:chr23:671592-671334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr23:771071-771329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr23:954380-954634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 185

               
               
               Conread position:2-256
               
               
               Cow position:chr23:1959547-1959289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr23:2023664-2023922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr23:2472880-2473138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:190
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr23:2761318-2761061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:193
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr23:2791353-2791600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:198
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):35, 119

               
               
               Conread position:2-256
               
               
               Cow position:chr23:3286179-3285921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 89

               
               
               Conread position:2-256
               
               
               Cow position:chr23:3302275-3302017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 89

               
               
               Conread position:2-256
               
               
               Cow position:chr23:4516953-4516703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 119

               
               
               Conread position:2-256
               
               
               Cow position:chr23:4532277-4532535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr23:4636935-4637193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 191

               
               
               Conread position:2-256
               
               
               Cow position:chr23:4892116-4891858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr23:5396159-5396418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:193
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr23:5441337-5441080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:193
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):35, 187

               
               
               Conread position:2-256
               
               
               Cow position:chr23:5624159-5624410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):210, 124

               
               
               Conread position:2-256
               
               
               Cow position:chr23:8707811-8707553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 192

               
               
               Conread position:2-256
               
               
               Cow position:chr23:10424346-10424100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:176
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):35, 56

               
               
               Conread position:2-256
               
               
               Cow position:chr23:10679413-10679671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr23:10936876-10937140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:197
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):35, 195

               
               
               Conread position:2-256
               
               
               Cow position:chr23:11070500-11070239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 191

               
               
               Conread position:2-256
               
               
               Cow position:chr23:11343917-11343659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr23:11376897-11377155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr23:14265763-14265509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 119

               
               
               Conread position:2-256
               
               
               Cow position:chr23:14959537-14959789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:195
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):35, 61

               
               
               Conread position:2-256
               
               
               Cow position:chr23:15215417-15215672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 170

               
               
               Conread position:2-256
               
               
               Cow position:chr23:16495856-16496113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr23:17846411-17846160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 60

               
               
               Conread position:2-256
               
               
               Cow position:chr23:19493269-19493011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr23:20389601-20389859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:176
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):35, 91

               
               
               Conread position:2-256
               
               
               Cow position:chr23:21772489-21772748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr23:22143890-22144147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr23:22170327-22170070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 89

               
               
               Conread position:2-256
               
               
               Cow position:chr23:24119975-24119717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr23:25351780-25351522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr23:26828669-26828415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 119

               
               
               Conread position:2-256
               
               
               Cow position:chr23:27402554-27402299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:192
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 129

               
               
               Conread position:2-256
               
               
               Cow position:chr23:28222122-28221863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:199
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):35, 181

               
               
               Conread position:2-256
               
               
               Cow position:chr23:28915748-28915495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 45

               
               
               Conread position:2-256
               
               
               Cow position:chr23:29043204-29042945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr23:30634174-30634432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr23:31605848-31605590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr23:36027832-36028090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr23:37199090-37199351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr23:38934814-38935052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:188
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):35, 104

               
               
               Conread position:2-256
               
               
               Cow position:chr23:39745280-39745026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:188
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):33, 119

               
               
               Conread position:2-256
               
               
               Cow position:chr23:40773748-40773492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:191
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr23:41015349-41015091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-265
               
               
               Cow position:chr23:14215814-14216070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):35, 89

               
               
               Conread position:2-265
               
               
               Cow position:chr23:15529007-15528741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 257

               
               
               Conread position:2-265
               
               
               Cow position:chr23:27313265-27312999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-270
               
               
               Cow position:chr23:21351534-21351802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 22

               
               
               Conread position:2-272
               
               
               Cow position:chr23:4437038-4436769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):38, 238

               
               
               Conread position:2-276
               
               
               Cow position:chr23:28987762-28987486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 93

               
               
               Conread position:3-233
               
               
               Cow position:chr23:8290873-8290646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:188
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):34, 101

               
               
               Conread position:3-253
               
               
               Cow position:chr23:36308623-36308378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 47

               
               
               Conread position:3-256
               
               
               Cow position:chr23:1398811-1399051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):32, 51

               
               
               Conread position:3-256
               
               
               Cow position:chr23:3549775-3550032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:195
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):34, 188

               
               
               Conread position:3-256
               
               
               Cow position:chr23:3877724-3877980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 173

               
               
               Conread position:3-256
               
               
               Cow position:chr23:25357765-25357508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:190
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:3-263
               
               
               Cow position:chr23:1325896-1326156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 181

               
               
               Conread position:3-271
               
               
               Cow position:chr23:11128437-11128169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 55

               
               
               Conread position:4-252
               
               
               Cow position:chr23:20025352-20025100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 186

               
               
               Conread position:4-252
               
               
               Cow position:chr23:31771850-31772100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:185
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:4-253
               
               
               Cow position:chr23:11078696-11078443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:188
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):33, 78

               
               
               Conread position:4-256
               
               
               Cow position:chr23:1010137-1010382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:193
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):34, 80

               
               
               Conread position:4-256
               
               
               Cow position:chr23:11079803-11079546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 190

               
               
               Conread position:4-256
               
               
               Cow position:chr23:11712248-11712505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 117

               
               
               Conread position:5-244
               
               
               Cow position:chr23:40890188-40889949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:178
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):121, 32

               
               
               Conread position:8-187
               
               
               Cow position:chr23:20541382-20541209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):29, 59

               
               
               Conread position:8-256
               
               
               Cow position:chr23:25554006-25553754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:177
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):29, 158

               
               
               Conread position:8-302
               
               
               Cow position:chr23:38584332-38584028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:215
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):29, 53

               
               
               Conread position:9-253
               
               
               Cow position:chr23:33817863-33817610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:186
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:9-256
               
               
               Cow position:chr23:1338080-1338326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:191
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):28, 122

               
               
               Conread position:14-256
               
               
               Cow position:chr23:2408804-2409049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:14-256
               
               
               Cow position:chr23:3709810-3709567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:187
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):23, 106

               
               
               Conread position:15-253
               
               
               Cow position:chr23:19637494-19637726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:171
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):130, 21

               
               
               Conread position:15-257
               
               
               Cow position:chr23:34347282-34347035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:194
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):24, 56

               
               
               Conread position:15-275
               
               
               Cow position:chr23:16057104-16056841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:186
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):76, 25

               
               
               Conread position:16-256
               
               
               Cow position:chr23:5870999-5871234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):21, 42

               
               
               Conread position:17-256
               
               
               Cow position:chr23:5882708-5882469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:165
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):20, 115

               
               
               Conread position:17-256
               
               
               Cow position:chr23:38027544-38027785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):20, 40

               
               
               Conread position:17-265
               
               
               Cow position:chr23:20170799-20171047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):20, 143

               
               
               Conread position:24-252
               
               
               Cow position:chr23:2369216-2368976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):26, 59

               
               
               Conread position:26-256
               
               
               Cow position:chr23:3730189-3730423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:181
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):11, 165

               
               
               Conread position:26-257
               
               
               Cow position:chr23:29447854-29448087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:187
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 161

               
               
               Conread position:59-256
               
               
               Cow position:chr23:1048511-1048711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):67, 131

               
               
               Conread position:68-253
               
               
               Cow position:chr23:2720807-2720622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):124, 48

               
               
               Conread position:70-256
               
               
               Cow position:chr23:29935625-29935436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:152
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):57, 9

               
               
               Conread position:73-256
               
               
               Cow position:chr23:21008256-21008442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:147
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):54, 117

               
               
               Conread position:84-256
               
               
               Cow position:chr23:15567669-15567844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):43, 106

               
               
               Conread position:93-256
               
               
               Cow position:chr23:2737549-2737384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):33, 67

               
               
               Conread position:102-256
               
               
               Cow position:chr23:3417009-3417166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:121
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):25, 88

               
               
               Conread position:1-253
               
               
               Cow position:chr24:17566358-17566108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 184

               
               
               Conread position:1-256
               
               
               Cow position:chr24:5910332-5910062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):125, 200

               
               
               Conread position:1-256
               
               
               Cow position:chr24:10244047-10244293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):36, 61

               
               
               Conread position:1-256
               
               
               Cow position:chr24:13374000-13374259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:200
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):35, 191

               
               
               Conread position:1-256
               
               
               Cow position:chr24:41005984-41005733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:191
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):36, 68

               
               
               Conread position:2-183
               
               
               Cow position:chr24:17544431-17544614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:147
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-187
               
               
               Cow position:chr24:33639985-33640172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-237
               
               
               Cow position:chr24:30870456-30870693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:185
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):34, 184

               
               
               Conread position:2-246
               
               
               Cow position:chr24:12696610-12696858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:189
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):35, 191

               
               
               Conread position:2-247
               
               
               Cow position:chr24:2948072-2947824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-252
               
               
               Cow position:chr24:6442951-6442697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-253
               
               
               Cow position:chr24:12347881-12348135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-253
               
               
               Cow position:chr24:14352865-14352610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:191
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-253
               
               
               Cow position:chr24:17365466-17365715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 78

               
               
               Conread position:2-253
               
               
               Cow position:chr24:24248988-24249244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):44, 32

               
               
               Conread position:2-253
               
               
               Cow position:chr24:35823692-35823947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 187

               
               
               Conread position:2-256
               
               
               Cow position:chr24:207483-207737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 192

               
               
               Conread position:2-256
               
               
               Cow position:chr24:1841359-1841617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr24:3162983-3162725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr24:3793995-3793737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr24:3851108-3850850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr24:5279725-5279467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr24:5862841-5863098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 193

               
               
               Conread position:2-256
               
               
               Cow position:chr24:5929292-5929034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr24:5990674-5990928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:193
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 191

               
               
               Conread position:2-256
               
               
               Cow position:chr24:6035668-6035926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr24:6067831-6068083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 78

               
               
               Conread position:2-256
               
               
               Cow position:chr24:6325859-6326116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:198
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr24:6412991-6412733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 191

               
               
               Conread position:2-256
               
               
               Cow position:chr24:7597046-7597304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:192
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr24:7749133-7748881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):124, 23

               
               
               Conread position:2-256
               
               
               Cow position:chr24:7960003-7960261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr24:8607842-8607584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 187

               
               
               Conread position:2-256
               
               
               Cow position:chr24:9549775-9549519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 45

               
               
               Conread position:2-256
               
               
               Cow position:chr24:9900884-9900626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr24:11104639-11104897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr24:11208094-11208352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr24:12090493-12090235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:195
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr24:12198843-12199111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:195
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):42, 205

               
               
               Conread position:2-256
               
               
               Cow position:chr24:13235778-13235524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:192
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):35, 64

               
               
               Conread position:2-256
               
               
               Cow position:chr24:13492003-13491751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:189
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):35, 96

               
               
               Conread position:2-256
               
               
               Cow position:chr24:13496797-13496539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr24:14146655-14146910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:191
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):5, 192

               
               
               Conread position:2-256
               
               
               Cow position:chr24:14760406-14760147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr24:15296628-15296370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr24:16080974-16081232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:192
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr24:17161465-17161723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr24:17188761-17189019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:197
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):33, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr24:17309911-17310179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:204
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr24:18112968-18112710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr24:18222966-18223225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr24:19688075-19688324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):34, 92

               
               
               Conread position:2-256
               
               
               Cow position:chr24:20283699-20283955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 184

               
               
               Conread position:2-256
               
               
               Cow position:chr24:20367876-20367621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:199
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):35, 22

               
               
               Conread position:2-256
               
               
               Cow position:chr24:20604262-20604004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr24:22795071-22794814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr24:22954075-22953817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr24:22975320-22975063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 114

               
               
               Conread position:2-256
               
               
               Cow position:chr24:23052371-23052633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 194

               
               
               Conread position:2-256
               
               
               Cow position:chr24:26412560-26412306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:198
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):35, 186

               
               
               Conread position:2-256
               
               
               Cow position:chr24:27148622-27148360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 147

               
               
               Conread position:2-256
               
               
               Cow position:chr24:29084151-29084410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:191
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr24:29190796-29190543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 172

               
               
               Conread position:2-256
               
               
               Cow position:chr24:30681620-30681867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr24:33937441-33937184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:197
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):35, 71

               
               
               Conread position:2-256
               
               
               Cow position:chr24:35067269-35067522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 172

               
               
               Conread position:2-256
               
               
               Cow position:chr24:36779783-36779526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):124, 187

               
               
               Conread position:2-256
               
               
               Cow position:chr24:40428181-40428439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 184

               
               
               Conread position:2-256
               
               
               Cow position:chr24:40466900-40467158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr24:40552132-40551880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:195
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):35, 96

               
               
               Conread position:2-257
               
               
               Cow position:chr24:12147075-12147333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:192
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):33, 110

               
               
               Conread position:2-265
               
               
               Cow position:chr24:14376130-14376396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 49

               
               
               Conread position:2-265
               
               
               Cow position:chr24:31067532-31067798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-265
               
               
               Cow position:chr24:31302196-31301952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:198
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):35, 98

               
               
               Conread position:2-265
               
               
               Cow position:chr24:36028002-36028267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 205

               
               
               Conread position:2-265
               
               
               Cow position:chr24:45087036-45086770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 191

               
               
               Conread position:2-270
               
               
               Cow position:chr24:9088607-9088869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:212
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):35, 49

               
               
               Conread position:2-270
               
               
               Cow position:chr24:22047556-22047828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-271
               
               
               Cow position:chr24:14250071-14250340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-275
               
               
               Cow position:chr24:13191673-13191394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 87

               
               
               Conread position:2-314
               
               
               Cow position:chr24:38296569-38296253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:3-150
               
               
               Cow position:chr24:16646423-16646566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:127
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):34, 59

               
               
               Conread position:3-187
               
               
               Cow position:chr24:41671370-41671184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:150
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:3-250
               
               
               Cow position:chr24:9071335-9071580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 118

               
               
               Conread position:3-253
               
               
               Cow position:chr24:14745872-14745622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):34, 159

               
               
               Conread position:3-256
               
               
               Cow position:chr24:6020566-6020823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 187

               
               
               Conread position:3-256
               
               
               Cow position:chr24:11462494-11462756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:184
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):33, 150

               
               
               Conread position:3-256
               
               
               Cow position:chr24:15667237-15667491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 72

               
               
               Conread position:3-256
               
               
               Cow position:chr24:17324203-17323949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):34, 47

               
               
               Conread position:3-256
               
               
               Cow position:chr24:17764092-17764344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):34, 106

               
               
               Conread position:3-256
               
               
               Cow position:chr24:18266981-18267231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 60

               
               
               Conread position:3-256
               
               
               Cow position:chr24:31357102-31356856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):34, 95

               
               
               Conread position:3-256
               
               
               Cow position:chr24:32608823-32608566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 187

               
               
               Conread position:3-256
               
               
               Cow position:chr24:36036319-36036571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 54

               
               
               Conread position:3-256
               
               
               Cow position:chr24:36308092-36307835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 188

               
               
               Conread position:3-256
               
               
               Cow position:chr24:38814157-38813902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 191

               
               
               Conread position:3-256
               
               
               Cow position:chr24:39501086-39501338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:189
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):32, 60

               
               
               Conread position:3-262
               
               
               Cow position:chr24:36710350-36710089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):34, 67

               
               
               Conread position:4-252
               
               
               Cow position:chr24:36556076-36556320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 123

               
               
               Conread position:4-256
               
               
               Cow position:chr24:25372613-25372358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:193
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 58

               
               
               Conread position:4-257
               
               
               Cow position:chr24:38588294-38588038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:191
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):33, 252

               
               
               Conread position:4-265
               
               
               Cow position:chr24:12332196-12332460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 185

               
               
               Conread position:8-252
               
               
               Cow position:chr24:16558778-16559020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:189
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 54

               
               
               Conread position:8-253
               
               
               Cow position:chr24:36726661-36726414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):29, 77

               
               
               Conread position:9-256
               
               
               Cow position:chr24:6524502-6524252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:191
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 64

               
               
               Conread position:9-256
               
               
               Cow position:chr24:40272353-40272102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 181

               
               
               Conread position:13-251
               
               
               Cow position:chr24:8431869-8431632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:187
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 49

               
               
               Conread position:15-249
               
               
               Cow position:chr24:16056366-16056596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):22, 43

               
               
               Conread position:15-256
               
               
               Cow position:chr24:14515955-14516199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:181
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:15-256
               
               
               Cow position:chr24:26274135-26274370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):21, 34

               
               
               Conread position:15-274
               
               
               Cow position:chr24:16474803-16474545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):22, 65

               
               
               Conread position:17-257
               
               
               Cow position:chr24:39956612-39956847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):20, 73

               
               
               Conread position:18-252
               
               
               Cow position:chr24:7576325-7576561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):19, 73

               
               
               Conread position:18-256
               
               
               Cow position:chr24:12119470-12119707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:181
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):19, 40

               
               
               Conread position:18-256
               
               
               Cow position:chr24:25439702-25439456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):19, 45

               
               
               Conread position:18-256
               
               
               Cow position:chr24:36721942-36721699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 170

               
               
               Conread position:19-250
               
               
               Cow position:chr24:12203021-12203250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:170
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):18, 33

               
               
               Conread position:19-253
               
               
               Cow position:chr24:28601534-28601766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):18, 84

               
               
               Conread position:25-256
               
               
               Cow position:chr24:40347582-40347818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:170
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):12, 154

               
               
               Conread position:27-251
               
               
               Cow position:chr24:40519115-40519343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:184
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 163

               
               
               Conread position:59-256
               
               
               Cow position:chr24:26388438-26388638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):68, 130

               
               
               Conread position:65-183
               
               
               Cow position:chr24:14380982-14381101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:97
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:69-253
               
               
               Cow position:chr24:43732728-43732543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):58, 110

               
               
               Conread position:91-265
               
               
               Cow position:chr24:6079849-6079672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):35, 167

               
               
               Conread position:92-265
               
               
               Cow position:chr24:35568410-35568244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:125
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:98-256
               
               
               Cow position:chr24:5653295-5653456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):28, 91

               
               
               Conread position:102-256
               
               
               Cow position:chr24:9546584-9546427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):25, 88

               
               
               Conread position:1-256
               
               
               Cow position:chr25:29313110-29313367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):36, 84

               
               
               Conread position:1-256
               
               
               Cow position:chr25:29802534-29802793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:2-183
               
               
               Cow position:chr25:34013544-34013726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:146
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-239
               
               
               Cow position:chr25:35446155-35445920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:182
               
               
               Alignm E-value:8.96831e-44
               
               
               Alignm gaps (pig, cow):34, 125

               
               
               Conread position:2-253
               
               
               Cow position:chr25:19367488-19367740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):35, 56

               
               
               Conread position:2-253
               
               
               Cow position:chr25:41097988-41098236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:193
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):36, 105

               
               
               Conread position:2-253
               
               
               Cow position:chr25:41385888-41386133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):33, 102

               
               
               Conread position:2-254
               
               
               Cow position:chr25:29357802-29358058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr25:7223222-7223480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr25:8655501-8655242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 50

               
               
               Conread position:2-256
               
               
               Cow position:chr25:11124976-11124718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr25:13787184-13786926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr25:13960272-13960019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 79

               
               
               Conread position:2-256
               
               
               Cow position:chr25:14756201-14756457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 171

               
               
               Conread position:2-256
               
               
               Cow position:chr25:17554052-17554306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:197
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):35, 19

               
               
               Conread position:2-256
               
               
               Cow position:chr25:17904850-17904592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr25:18190168-18190420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:191
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):35, 66

               
               
               Conread position:2-256
               
               
               Cow position:chr25:18330565-18330824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:197
               
               
               Alignm E-value:8.96831e-44
               
               
               Alignm gaps (pig, cow):36, 190

               
               
               Conread position:2-256
               
               
               Cow position:chr25:19139362-19139620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr25:19337117-19337373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 48

               
               
               Conread position:2-256
               
               
               Cow position:chr25:19923731-19923479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 130

               
               
               Conread position:2-256
               
               
               Cow position:chr25:24654964-24655217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 172

               
               
               Conread position:2-256
               
               
               Cow position:chr25:26282234-26281977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 114

               
               
               Conread position:2-256
               
               
               Cow position:chr25:26353576-26353832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 24

               
               
               Conread position:2-256
               
               
               Cow position:chr25:26705672-26705930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr25:26780876-26781130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:189
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):35, 191

               
               
               Conread position:2-256
               
               
               Cow position:chr25:26896256-26896004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:197
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):42, 23

               
               
               Conread position:2-256
               
               
               Cow position:chr25:27019028-27019285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:189
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr25:28863082-28862824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr25:32577452-32577710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr25:32610210-32610468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr25:34164352-34164609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 114

               
               
               Conread position:2-256
               
               
               Cow position:chr25:34508972-34509227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:197
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):35, 48

               
               
               Conread position:2-256
               
               
               Cow position:chr25:35372403-35372661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr25:35553878-35553622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 190

               
               
               Conread position:2-256
               
               
               Cow position:chr25:35567676-35567931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:191
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):35, 114

               
               
               Conread position:2-256
               
               
               Cow position:chr25:35589287-35589030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 187

               
               
               Conread position:2-256
               
               
               Cow position:chr25:36350948-36350692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:189
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr25:39386619-39386877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-257
               
               
               Cow position:chr25:12938997-12939256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 191

               
               
               Conread position:2-258
               
               
               Cow position:chr25:17992937-17993191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:198
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):35, 125

               
               
               Conread position:2-265
               
               
               Cow position:chr25:17585812-17586076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:198
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):35, 191

               
               
               Conread position:2-265
               
               
               Cow position:chr25:26850007-26850271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:195
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):35, 83

               
               
               Conread position:2-265
               
               
               Cow position:chr25:31073386-31073652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-265
               
               
               Cow position:chr25:41121214-41120953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-268
               
               
               Cow position:chr25:16801650-16801392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 191

               
               
               Conread position:2-270
               
               
               Cow position:chr25:26914440-26914173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 73

               
               
               Conread position:2-270
               
               
               Cow position:chr25:34343698-34343966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 60

               
               
               Conread position:2-271
               
               
               Cow position:chr25:20075687-20075418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:198
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):35, 131

               
               
               Conread position:2-272
               
               
               Cow position:chr25:18072435-18072158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-272
               
               
               Cow position:chr25:20633970-20633694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 99

               
               
               Conread position:2-272
               
               
               Cow position:chr25:28275458-28275732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 185

               
               
               Conread position:2-275
               
               
               Cow position:chr25:29525657-29525937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-304
               
               
               Cow position:chr25:17995080-17995390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 185

               
               
               Conread position:3-239
               
               
               Cow position:chr25:23366876-23366636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 192

               
               
               Conread position:3-247
               
               
               Cow position:chr25:2507479-2507233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):131, 186

               
               
               Conread position:3-249
               
               
               Cow position:chr25:16922582-16922830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 72

               
               
               Conread position:3-253
               
               
               Cow position:chr25:41356588-41356842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 192

               
               
               Conread position:3-256
               
               
               Cow position:chr25:6955277-6955020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:190
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:3-256
               
               
               Cow position:chr25:10137022-10136776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:195
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):35, 128

               
               
               Conread position:3-256
               
               
               Cow position:chr25:11956040-11955783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 187

               
               
               Conread position:3-256
               
               
               Cow position:chr25:18486668-18486418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 142

               
               
               Conread position:3-256
               
               
               Cow position:chr25:23394074-23393824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):34, 63

               
               
               Conread position:3-256
               
               
               Cow position:chr25:26931305-26931048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:191
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:3-256
               
               
               Cow position:chr25:33687998-33688266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:198
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:3-256
               
               
               Cow position:chr25:35755035-35755291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 92

               
               
               Conread position:3-256
               
               
               Cow position:chr25:41135539-41135791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 93

               
               
               Conread position:3-257
               
               
               Cow position:chr25:17657828-17657572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 63

               
               
               Conread position:3-257
               
               
               Cow position:chr25:23325819-23326075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:190
               
               
               Alignm E-value:8.96831e-44
               
               
               Alignm gaps (pig, cow):123, 28

               
               
               Conread position:3-265
               
               
               Cow position:chr25:4522602-4522868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):34, 190

               
               
               Conread position:3-265
               
               
               Cow position:chr25:25826659-25826392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:201
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):34, 60

               
               
               Conread position:3-270
               
               
               Cow position:chr25:37648626-37648370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 25

               
               
               Conread position:3-294
               
               
               Cow position:chr25:33574529-33574819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:219
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):37, 124

               
               
               Conread position:4-256
               
               
               Cow position:chr25:22151313-22151057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:4-270
               
               
               Cow position:chr25:18269685-18269412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:206
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):33, 93

               
               
               Conread position:6-183
               
               
               Cow position:chr25:41364761-41364939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:135
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):20, 39

               
               
               Conread position:8-256
               
               
               Cow position:chr25:13429908-13430157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:185
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):18, 185

               
               
               Conread position:8-256
               
               
               Cow position:chr25:20772130-20772374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 182

               
               
               Conread position:8-256
               
               
               Cow position:chr25:34503018-34503270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 183

               
               
               Conread position:8-265
               
               
               Cow position:chr25:23361689-23361434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):29, 55

               
               
               Conread position:9-233
               
               
               Cow position:chr25:24228134-24228360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:160
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):18, 151

               
               
               Conread position:9-252
               
               
               Cow position:chr25:27231562-27231315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 177

               
               
               Conread position:9-256
               
               
               Cow position:chr25:11043822-11043573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:193
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:9-256
               
               
               Cow position:chr25:11665866-11665628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:185
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):27, 73

               
               
               Conread position:9-256
               
               
               Cow position:chr25:25480403-25480646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:184
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):28, 90

               
               
               Conread position:9-256
               
               
               Cow position:chr25:33838579-33838335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:189
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):27, 32

               
               
               Conread position:9-257
               
               
               Cow position:chr25:9395612-9395366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:186
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):28, 142

               
               
               Conread position:9-257
               
               
               Cow position:chr25:12082148-12082394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:188
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):27, 112

               
               
               Conread position:9-270
               
               
               Cow position:chr25:18490268-18490001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 81

               
               
               Conread position:9-274
               
               
               Cow position:chr25:10633806-10634071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:203
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):47, 146

               
               
               Conread position:10-256
               
               
               Cow position:chr25:40322088-40322338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 164

               
               
               Conread position:14-256
               
               
               Cow position:chr25:18886283-18886529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:190
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:15-252
               
               
               Cow position:chr25:10012865-10013105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:180
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):22, 137

               
               
               Conread position:15-257
               
               
               Cow position:chr25:23998992-23999232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:179
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):21, 134

               
               
               Conread position:18-253
               
               
               Cow position:chr25:13941540-13941783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):19, 183

               
               
               Conread position:18-253
               
               
               Cow position:chr25:37593596-37593357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:187
               
               
               Alignm E-value:8.96831e-44
               
               
               Alignm gaps (pig, cow):20, 40

               
               
               Conread position:18-256
               
               
               Cow position:chr25:24303073-24303313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):19, 44

               
               
               Conread position:19-256
               
               
               Cow position:chr25:25039443-25039217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:178
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):18, 102

               
               
               Conread position:28-272
               
               
               Cow position:chr25:4372511-4372751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):185, 39

               
               
               Conread position:54-256
               
               
               Cow position:chr25:11896774-11896570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):72, 29

               
               
               Conread position:59-256
               
               
               Cow position:chr25:35571971-35571771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):68, 131

               
               
               Conread position:63-265
               
               
               Cow position:chr25:3172252-3172455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):64, 88

               
               
               Conread position:65-190
               
               
               Cow position:chr25:26518432-26518307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:103
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):61, 104

               
               
               Conread position:81-256
               
               
               Cow position:chr25:27076021-27076199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:141
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):46, 107

               
               
               Conread position:92-256
               
               
               Cow position:chr25:21949917-21949750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:127
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):35, 98

               
               
               Conread position:1-256
               
               
               Cow position:chr26:6038227-6038474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:193
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):36, 174

               
               
               Conread position:1-256
               
               
               Cow position:chr26:8885310-8885052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:1-256
               
               
               Cow position:chr26:17429008-17429267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 190

               
               
               Conread position:1-256
               
               
               Cow position:chr26:35560594-35560853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 190

               
               
               Conread position:1-270
               
               
               Cow position:chr26:3564572-3564848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 190

               
               
               Conread position:2-183
               
               
               Cow position:chr26:30725451-30725635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-186
               
               
               Cow position:chr26:30786393-30786207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-187
               
               
               Cow position:chr26:2670354-2670538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):35, 128

               
               
               Conread position:2-210
               
               
               Cow position:chr26:17169296-17169090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-210
               
               
               Cow position:chr26:29433698-29433492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:166
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-239
               
               
               Cow position:chr26:18877272-18877032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:182
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):35, 76

               
               
               Conread position:2-248
               
               
               Cow position:chr26:20019567-20019317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-250
               
               
               Cow position:chr26:26286326-26286073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 189

               
               
               Conread position:2-252
               
               
               Cow position:chr26:6843754-6844008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 187

               
               
               Conread position:2-252
               
               
               Cow position:chr26:17327631-17327374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 190

               
               
               Conread position:2-253
               
               
               Cow position:chr26:3230932-3230679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:186
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):35, 59

               
               
               Conread position:2-253
               
               
               Cow position:chr26:3755479-3755232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:174
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):125, 34

               
               
               Conread position:2-253
               
               
               Cow position:chr26:17393433-17393684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:186
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):46, 127

               
               
               Conread position:2-256
               
               
               Cow position:chr26:387146-386888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr26:1088643-1088392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:194
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):35, 51

               
               
               Conread position:2-256
               
               
               Cow position:chr26:1342829-1343087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr26:1346528-1346786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:191
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr26:1621113-1620863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:190
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):35, 49

               
               
               Conread position:2-256
               
               
               Cow position:chr26:2201994-2201738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:197
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):35, 135

               
               
               Conread position:2-256
               
               
               Cow position:chr26:3157581-3157323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr26:3199837-3199579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr26:3537588-3537330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr26:3833500-3833242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:194
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr26:3862613-3862870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:198
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):35, 88

               
               
               Conread position:2-256
               
               
               Cow position:chr26:4440300-4440546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 168

               
               
               Conread position:2-256
               
               
               Cow position:chr26:4728859-4729116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 93

               
               
               Conread position:2-256
               
               
               Cow position:chr26:5679998-5679738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr26:6430049-6429794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:197
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):35, 48

               
               
               Conread position:2-256
               
               
               Cow position:chr26:7459496-7459756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:201
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):35, 112

               
               
               Conread position:2-256
               
               
               Cow position:chr26:7559150-7559408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr26:8084292-8084034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr26:8738951-8739209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr26:9070028-9069769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:192
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr26:9558414-9558672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 138

               
               
               Conread position:2-256
               
               
               Cow position:chr26:9694330-9694588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr26:12585072-12585330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr26:13806563-13806819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 21

               
               
               Conread position:2-256
               
               
               Cow position:chr26:14487795-14488047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 119

               
               
               Conread position:2-256
               
               
               Cow position:chr26:15145960-15145702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr26:18803903-18804162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 190

               
               
               Conread position:2-256
               
               
               Cow position:chr26:18857581-18857328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:198
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):35, 73

               
               
               Conread position:2-256
               
               
               Cow position:chr26:18928741-18928490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:198
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):36, 144

               
               
               Conread position:2-256
               
               
               Cow position:chr26:22691852-22691598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):125, 32

               
               
               Conread position:2-256
               
               
               Cow position:chr26:22831573-22831828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 20

               
               
               Conread position:2-256
               
               
               Cow position:chr26:23889876-23889620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 59

               
               
               Conread position:2-256
               
               
               Cow position:chr26:30594163-30594421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr26:31138486-31138738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):155, 7

               
               
               Conread position:2-256
               
               
               Cow position:chr26:34265430-34265172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr26:35121776-35122034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr26:35191082-35191339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr26:35423963-35423707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 151

               
               
               Conread position:2-261
               
               
               Cow position:chr26:11370158-11369900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:195
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):33, 24

               
               
               Conread position:2-265
               
               
               Cow position:chr26:15199493-15199228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 190

               
               
               Conread position:2-265
               
               
               Cow position:chr26:23591161-23590895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 192

               
               
               Conread position:2-270
               
               
               Cow position:chr26:1390448-1390173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-270
               
               
               Cow position:chr26:9115504-9115231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):125, 187

               
               
               Conread position:2-270
               
               
               Cow position:chr26:13183776-13183503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:3-252
               
               
               Cow position:chr26:17182526-17182295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):34, 54

               
               
               Conread position:3-254
               
               
               Cow position:chr26:34015302-34015052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):37, 139

               
               
               Conread position:3-256
               
               
               Cow position:chr26:1885475-1885220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:190
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):34, 54

               
               
               Conread position:3-256
               
               
               Cow position:chr26:8308288-8308554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):55, 33

               
               
               Conread position:3-256
               
               
               Cow position:chr26:20256088-20255837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 62

               
               
               Conread position:3-256
               
               
               Cow position:chr26:20496995-20496744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 128

               
               
               Conread position:3-265
               
               
               Cow position:chr26:21012582-21012320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:176
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):124, 71

               
               
               Conread position:3-272
               
               
               Cow position:chr26:4324256-4324525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:210
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):32, 40

               
               
               Conread position:4-253
               
               
               Cow position:chr26:3556653-3556888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:184
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):39, 52

               
               
               Conread position:4-256
               
               
               Cow position:chr26:46187-46442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 54

               
               
               Conread position:4-256
               
               
               Cow position:chr26:1915804-1915550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:186
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:4-256
               
               
               Cow position:chr26:24239163-24238914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):33, 142

               
               
               Conread position:6-253
               
               
               Cow position:chr26:9100532-9100769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):31, 93

               
               
               Conread position:8-253
               
               
               Cow position:chr26:27987140-27987379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):29, 55

               
               
               Conread position:8-256
               
               
               Cow position:chr26:13773511-13773261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:190
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 228

               
               
               Conread position:8-256
               
               
               Cow position:chr26:18800704-18800951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:190
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 88

               
               
               Conread position:14-238
               
               
               Cow position:chr26:20218700-20218481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):23, 76

               
               
               Conread position:15-252
               
               
               Cow position:chr26:26238452-26238214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:179
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):21, 150

               
               
               Conread position:17-256
               
               
               Cow position:chr26:783804-784054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:17-256
               
               
               Cow position:chr26:9063535-9063296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):29, 211

               
               
               Conread position:18-256
               
               
               Cow position:chr26:3700409-3700179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:173
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):19, 38

               
               
               Conread position:18-256
               
               
               Cow position:chr26:9840947-9841190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:182
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):19, 111

               
               
               Conread position:18-265
               
               
               Cow position:chr26:11269671-11269429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:180
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):20, 174

               
               
               Conread position:43-256
               
               
               Cow position:chr26:3722868-3722658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):169, 83

               
               
               Conread position:47-256
               
               
               Cow position:chr26:10011541-10011330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):147, 0

               
               
               Conread position:47-256
               
               
               Cow position:chr26:14291211-14291010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):162, 73

               
               
               Conread position:51-271
               
               
               Cow position:chr26:3689915-3689688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):68, 146

               
               
               Conread position:83-256
               
               
               Cow position:chr26:1637376-1637549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):129, 52

               
               
               Conread position:84-256
               
               
               Cow position:chr26:14897388-14897209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:134
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):23, 110

               
               
               Conread position:85-265
               
               
               Cow position:chr26:756231-756410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):41, 70

               
               
               Conread position:104-256
               
               
               Cow position:chr26:2348808-2348963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):23, 86

               
               
               Conread position:106-265
               
               
               Cow position:chr26:7506352-7506513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:128
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):20, 86

               
               
               Conread position:1-256
               
               
               Cow position:chr27:26330354-26330095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 185

               
               
               Conread position:1-257
               
               
               Cow position:chr27:165498-165757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 13

               
               
               Conread position:1-265
               
               
               Cow position:chr27:3232112-3232379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-183
               
               
               Cow position:chr27:12239488-12239306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:154
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):124, 0

               
               
               Conread position:2-186
               
               
               Cow position:chr27:17476785-17476972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:2-187
               
               
               Cow position:chr27:3649902-3649715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:150
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-252
               
               
               Cow position:chr27:344509-344756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 184

               
               
               Conread position:2-253
               
               
               Cow position:chr27:14380724-14380470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 55

               
               
               Conread position:2-253
               
               
               Cow position:chr27:25799679-25799423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:193
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 88

               
               
               Conread position:2-253
               
               
               Cow position:chr27:29035961-29036214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:192
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 156

               
               
               Conread position:2-253
               
               
               Cow position:chr27:29467349-29467097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:178
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):35, 73

               
               
               Conread position:2-256
               
               
               Cow position:chr27:1081742-1081999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:192
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):35, 88

               
               
               Conread position:2-256
               
               
               Cow position:chr27:1521095-1520843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:195
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):35, 96

               
               
               Conread position:2-256
               
               
               Cow position:chr27:3653279-3653537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 187

               
               
               Conread position:2-256
               
               
               Cow position:chr27:4982793-4982535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr27:5983609-5983867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr27:5990624-5990883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:188
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):35, 196

               
               
               Conread position:2-256
               
               
               Cow position:chr27:8201356-8201101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:193
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 185

               
               
               Conread position:2-256
               
               
               Cow position:chr27:8427271-8427020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:192
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):124, 22

               
               
               Conread position:2-256
               
               
               Cow position:chr27:8972865-8972607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 186

               
               
               Conread position:2-256
               
               
               Cow position:chr27:9333088-9332841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:199
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):35, 119

               
               
               Conread position:2-256
               
               
               Cow position:chr27:9970592-9970334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr27:10383852-10383611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):35, 61

               
               
               Conread position:2-256
               
               
               Cow position:chr27:10579368-10579110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr27:11434588-11434338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:201
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):35, 48

               
               
               Conread position:2-256
               
               
               Cow position:chr27:11481352-11481094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 184

               
               
               Conread position:2-256
               
               
               Cow position:chr27:12006569-12006311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr27:13309065-13308807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr27:13901545-13901287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr27:15033470-15033728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 184

               
               
               Conread position:2-256
               
               
               Cow position:chr27:15633922-15634179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 99

               
               
               Conread position:2-256
               
               
               Cow position:chr27:16030976-16031234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr27:19423956-19424214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 191

               
               
               Conread position:2-256
               
               
               Cow position:chr27:19523288-19523545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 175

               
               
               Conread position:2-256
               
               
               Cow position:chr27:19932135-19932403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:202
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr27:22647211-22647469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr27:22797238-22797494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 174

               
               
               Conread position:2-256
               
               
               Cow position:chr27:24295839-24296106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:202
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):35, 198

               
               
               Conread position:2-256
               
               
               Cow position:chr27:25800790-25801042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 109

               
               
               Conread position:2-256
               
               
               Cow position:chr27:30306848-30307106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-258
               
               
               Cow position:chr27:15866882-15867134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 65

               
               
               Conread position:2-265
               
               
               Cow position:chr27:14297628-14297362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-265
               
               
               Cow position:chr27:20810837-20810576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 172

               
               
               Conread position:2-272
               
               
               Cow position:chr27:30036292-30036015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 190

               
               
               Conread position:2-274
               
               
               Cow position:chr27:2557572-2557845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 119

               
               
               Conread position:2-279
               
               
               Cow position:chr27:27045595-27045317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:212
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):35, 60

               
               
               Conread position:2-295
               
               
               Cow position:chr27:1189083-1188784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:220
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):35, 125

               
               
               Conread position:3-184
               
               
               Cow position:chr27:24205714-24205897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:146
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:3-190
               
               
               Cow position:chr27:10306537-10306349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):45, 18

               
               
               Conread position:3-252
               
               
               Cow position:chr27:21451863-21451611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:3-256
               
               
               Cow position:chr27:1501933-1501688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):34, 55

               
               
               Conread position:3-256
               
               
               Cow position:chr27:2681940-2681686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 189

               
               
               Conread position:3-256
               
               
               Cow position:chr27:8291261-8291006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:191
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 192

               
               
               Conread position:3-256
               
               
               Cow position:chr27:13353726-13353469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 187

               
               
               Conread position:3-256
               
               
               Cow position:chr27:15272656-15272905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 54

               
               
               Conread position:3-256
               
               
               Cow position:chr27:15349075-15348825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):188, 31

               
               
               Conread position:3-256
               
               
               Cow position:chr27:26785237-26784985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 138

               
               
               Conread position:3-256
               
               
               Cow position:chr27:27729071-27729324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:179
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):34, 82

               
               
               Conread position:3-256
               
               
               Cow position:chr27:27930616-27930371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:204
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):25, 60

               
               
               Conread position:3-259
               
               
               Cow position:chr27:21350267-21350010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 155

               
               
               Conread position:3-272
               
               
               Cow position:chr27:16787878-16788153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 188

               
               
               Conread position:4-256
               
               
               Cow position:chr27:2331922-2331666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:5-186
               
               
               Cow position:chr27:16332061-16332243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:153
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:8-253
               
               
               Cow position:chr27:15697758-15697516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:198
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):29, 82

               
               
               Conread position:8-256
               
               
               Cow position:chr27:15870605-15870847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:181
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):31, 58

               
               
               Conread position:8-256
               
               
               Cow position:chr27:27291808-27291552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 185

               
               
               Conread position:9-256
               
               
               Cow position:chr27:1536583-1536333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:187
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):28, 187

               
               
               Conread position:9-256
               
               
               Cow position:chr27:21392424-21392175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:191
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):28, 81

               
               
               Conread position:9-274
               
               
               Cow position:chr27:27279128-27278859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):26, 137

               
               
               Conread position:13-256
               
               
               Cow position:chr27:27557212-27556969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:192
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 100

               
               
               Conread position:14-256
               
               
               Cow position:chr27:4331327-4331577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 181

               
               
               Conread position:14-256
               
               
               Cow position:chr27:26551983-26552220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):21, 129

               
               
               Conread position:14-257
               
               
               Cow position:chr27:5925671-5925435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:186
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):21, 76

               
               
               Conread position:15-251
               
               
               Cow position:chr27:25971192-25971433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):22, 89

               
               
               Conread position:15-256
               
               
               Cow position:chr27:8429419-8429166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:18-253
               
               
               Cow position:chr27:31268615-31268382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):83, 30

               
               
               Conread position:18-256
               
               
               Cow position:chr27:13316964-13316726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:188
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 175

               
               
               Conread position:23-270
               
               
               Cow position:chr27:20765140-20764894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):186, 13

               
               
               Conread position:26-256
               
               
               Cow position:chr27:5914328-5914096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:175
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):11, 65

               
               
               Conread position:46-249
               
               
               Cow position:chr27:24055082-24054880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):30, 122

               
               
               Conread position:63-273
               
               
               Cow position:chr27:9989843-9990060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:167
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):63, 126

               
               
               Conread position:74-252
               
               
               Cow position:chr27:8262116-8261937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):54, 7

               
               
               Conread position:74-272
               
               
               Cow position:chr27:25885174-25884969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):53, 29

               
               
               Conread position:86-256
               
               
               Cow position:chr27:15544351-15544178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):41, 103

               
               
               Conread position:1-189
               
               
               Cow position:chr28:7981494-7981681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:146
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):36, 62

               
               
               Conread position:1-253
               
               
               Cow position:chr28:23868706-23868450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 192

               
               
               Conread position:1-253
               
               
               Cow position:chr28:24487919-24488173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 131

               
               
               Conread position:1-253
               
               
               Cow position:chr28:25409098-25408848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):36, 52

               
               
               Conread position:1-256
               
               
               Cow position:chr28:5825317-5825058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 74

               
               
               Conread position:1-256
               
               
               Cow position:chr28:23544090-23543835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:192
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):36, 185

               
               
               Conread position:1-256
               
               
               Cow position:chr28:34597713-34597453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 191

               
               
               Conread position:1-256
               
               
               Cow position:chr28:34731199-34730941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 31

               
               
               Conread position:2-183
               
               
               Cow position:chr28:1214314-1214497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-183
               
               
               Cow position:chr28:12406697-12406878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):35, 66

               
               
               Conread position:2-186
               
               
               Cow position:chr28:6319684-6319866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):125, 77

               
               
               Conread position:2-186
               
               
               Cow position:chr28:24588779-24588965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:149
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-187
               
               
               Cow position:chr28:9710687-9710874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:149
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-187
               
               
               Cow position:chr28:12701334-12701147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:149
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-235
               
               
               Cow position:chr28:3188550-3188786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):35, 149

               
               
               Conread position:2-237
               
               
               Cow position:chr28:15715438-15715200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):35, 136

               
               
               Conread position:2-247
               
               
               Cow position:chr28:5336338-5336587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:192
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-247
               
               
               Cow position:chr28:5768417-5768168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 168

               
               
               Conread position:2-253
               
               
               Cow position:chr28:444875-444620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 187

               
               
               Conread position:2-253
               
               
               Cow position:chr28:5637517-5637262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-253
               
               
               Cow position:chr28:24886327-24886072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-253
               
               
               Cow position:chr28:28471490-28471237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:196
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):43, 60

               
               
               Conread position:2-256
               
               
               Cow position:chr28:482242-482499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:198
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):35, 96

               
               
               Conread position:2-256
               
               
               Cow position:chr28:786128-785876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:191
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):35, 92

               
               
               Conread position:2-256
               
               
               Cow position:chr28:1198662-1198404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr28:1508346-1508085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:189
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):35, 198

               
               
               Conread position:2-256
               
               
               Cow position:chr28:1943829-1944086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr28:2645180-2644924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:193
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 76

               
               
               Conread position:2-256
               
               
               Cow position:chr28:3627480-3627222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr28:4214357-4214101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:193
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 193

               
               
               Conread position:2-256
               
               
               Cow position:chr28:5111256-5111512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 191

               
               
               Conread position:2-256
               
               
               Cow position:chr28:5211588-5211331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 114

               
               
               Conread position:2-256
               
               
               Cow position:chr28:5312441-5312183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr28:5748239-5748497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:197
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):35, 187

               
               
               Conread position:2-256
               
               
               Cow position:chr28:5940953-5940695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr28:6047262-6047005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 93

               
               
               Conread position:2-256
               
               
               Cow position:chr28:6471973-6472230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr28:6478685-6478428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 174

               
               
               Conread position:2-256
               
               
               Cow position:chr28:6535331-6535589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:191
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr28:6776536-6776794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 208

               
               
               Conread position:2-256
               
               
               Cow position:chr28:7005495-7005236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:198
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):15, 190

               
               
               Conread position:2-256
               
               
               Cow position:chr28:7059697-7059439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr28:7336450-7336192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr28:7907079-7907336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr28:9182336-9182078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr28:9287926-9288184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 217

               
               
               Conread position:2-256
               
               
               Cow position:chr28:10194138-10194396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 207

               
               
               Conread position:2-256
               
               
               Cow position:chr28:10303304-10303047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 64

               
               
               Conread position:2-256
               
               
               Cow position:chr28:10473425-10473176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:191
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):36, 125

               
               
               Conread position:2-256
               
               
               Cow position:chr28:10772543-10772292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:192
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 132

               
               
               Conread position:2-256
               
               
               Cow position:chr28:13323600-13323342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr28:13463430-13463172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 184

               
               
               Conread position:2-256
               
               
               Cow position:chr28:13523150-13522894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 160

               
               
               Conread position:2-256
               
               
               Cow position:chr28:14666612-14666355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 239

               
               
               Conread position:2-256
               
               
               Cow position:chr28:15054623-15054365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr28:15917060-15917316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr28:16181835-16181577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr28:16597614-16597359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 169

               
               
               Conread position:2-256
               
               
               Cow position:chr28:17030631-17030886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):34, 73

               
               
               Conread position:2-256
               
               
               Cow position:chr28:17391900-17391642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr28:17663482-17663740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr28:18516678-18516937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 190

               
               
               Conread position:2-256
               
               
               Cow position:chr28:20934945-20935203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr28:20967202-20967460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:193
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr28:21379960-21379704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 191

               
               
               Conread position:2-256
               
               
               Cow position:chr28:21767837-21768084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):35, 96

               
               
               Conread position:2-256
               
               
               Cow position:chr28:21896749-21896491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr28:23309869-23310127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr28:24992954-24992696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr28:25850028-25849770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr28:26419534-26419792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 187

               
               
               Conread position:2-256
               
               
               Cow position:chr28:28357317-28357575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr28:28934496-28934754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr28:29036185-29036443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr28:29222818-29223076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr28:29435340-29435592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 157

               
               
               Conread position:2-256
               
               
               Cow position:chr28:32589166-32588908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr28:33255788-33255530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr28:33640035-33639779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 214

               
               
               Conread position:2-265
               
               
               Cow position:chr28:25828862-25828596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-265
               
               
               Cow position:chr28:29823652-29823387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 192

               
               
               Conread position:2-272
               
               
               Cow position:chr28:7744565-7744287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-272
               
               
               Cow position:chr28:28723690-28723422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:198
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):35, 108

               
               
               Conread position:2-274
               
               
               Cow position:chr28:6959696-6959421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 191

               
               
               Conread position:2-298
               
               
               Cow position:chr28:10578629-10578931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:188
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:3-181
               
               
               Cow position:chr28:5817087-5816907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:144
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:3-189
               
               
               Cow position:chr28:16211869-16212051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):34, 124

               
               
               Conread position:3-252
               
               
               Cow position:chr28:15687757-15687511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:193
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 72

               
               
               Conread position:3-252
               
               
               Cow position:chr28:29806975-29807226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 190

               
               
               Conread position:3-253
               
               
               Cow position:chr28:26923163-26923418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 190

               
               
               Conread position:3-253
               
               
               Cow position:chr28:34878984-34879228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:187
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:3-254
               
               
               Cow position:chr28:31322652-31322405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:190
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):124, 10

               
               
               Conread position:3-256
               
               
               Cow position:chr28:600717-600975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:3-256
               
               
               Cow position:chr28:1383987-1384246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:3-256
               
               
               Cow position:chr28:1956829-1956578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:197
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):34, 86

               
               
               Conread position:3-256
               
               
               Cow position:chr28:2222898-2223157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:185
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:3-256
               
               
               Cow position:chr28:8717487-8717744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 190

               
               
               Conread position:3-256
               
               
               Cow position:chr28:13373081-13373329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:187
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):123, 33

               
               
               Conread position:3-256
               
               
               Cow position:chr28:15600291-15600528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:3-256
               
               
               Cow position:chr28:30098342-30098087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 188

               
               
               Conread position:3-265
               
               
               Cow position:chr28:6473790-6474053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 190

               
               
               Conread position:3-265
               
               
               Cow position:chr28:23615610-23615344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 257

               
               
               Conread position:3-279
               
               
               Cow position:chr28:21362974-21362701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 145

               
               
               Conread position:4-256
               
               
               Cow position:chr28:7685477-7685727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:191
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 46

               
               
               Conread position:4-256
               
               
               Cow position:chr28:12935809-12936065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:185
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:4-272
               
               
               Cow position:chr28:7784758-7785032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 48

               
               
               Conread position:8-253
               
               
               Cow position:chr28:16543247-16543487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):118, 22

               
               
               Conread position:9-232
               
               
               Cow position:chr28:23794120-23794340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:179
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):28, 82

               
               
               Conread position:9-256
               
               
               Cow position:chr28:5772868-5772627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):28, 64

               
               
               Conread position:9-256
               
               
               Cow position:chr28:10479437-10479681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:194
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):35, 96

               
               
               Conread position:9-256
               
               
               Cow position:chr28:14150448-14150197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:190
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:10-256
               
               
               Cow position:chr28:15605076-15604826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):24, 181

               
               
               Conread position:14-256
               
               
               Cow position:chr28:22254745-22254989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 162

               
               
               Conread position:14-256
               
               
               Cow position:chr28:32785972-32786218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:189
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:15-256
               
               
               Cow position:chr28:1024879-1025124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:187
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):22, 151

               
               
               Conread position:15-256
               
               
               Cow position:chr28:3745410-3745172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):21, 48

               
               
               Conread position:15-256
               
               
               Cow position:chr28:21569350-21569102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):22, 32

               
               
               Conread position:16-253
               
               
               Cow position:chr28:21104526-21104757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:182
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):21, 111

               
               
               Conread position:17-272
               
               
               Cow position:chr28:11501770-11502032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 177

               
               
               Conread position:18-252
               
               
               Cow position:chr28:30960989-30960760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):20, 14

               
               
               Conread position:18-256
               
               
               Cow position:chr28:3004067-3004310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:184
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:20-256
               
               
               Cow position:chr28:24620415-24620654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:161
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):16, 127

               
               
               Conread position:34-256
               
               
               Cow position:chr28:23025806-23025583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:152
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):93, 55

               
               
               Conread position:36-256
               
               
               Cow position:chr28:4929018-4929241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:174
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):90, 154

               
               
               Conread position:37-256
               
               
               Cow position:chr28:7443038-7443260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):90, 153

               
               
               Conread position:57-274
               
               
               Cow position:chr28:23620364-23620157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):137, 74

               
               
               Conread position:65-256
               
               
               Cow position:chr28:30533657-30533848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:142
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):61, 16

               
               
               Conread position:69-245
               
               
               Cow position:chr28:28340255-28340076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):5, 107

               
               
               Conread position:71-256
               
               
               Cow position:chr28:331503-331691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:139
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:74-256
               
               
               Cow position:chr28:22229939-22230123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:145
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):68, 16

               
               
               Conread position:81-256
               
               
               Cow position:chr28:12216902-12217080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:128
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:88-275
               
               
               Cow position:chr28:28929212-28929017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):39, 58

               
               
               Conread position:104-256
               
               
               Cow position:chr28:28184756-28184600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):22, 86

               
               
               Conread position:1-253
               
               
               Cow position:chr29:10452377-10452633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:1-253
               
               
               Cow position:chr29:21167708-21167456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:192
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 193

               
               
               Conread position:1-253
               
               
               Cow position:chr29:40954456-40954712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:194
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):47, 190

               
               
               Conread position:1-253
               
               
               Cow position:chr29:45462670-45462416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 67

               
               
               Conread position:2-190
               
               
               Cow position:chr29:108819-108632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:142
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):35, 77

               
               
               Conread position:2-210
               
               
               Cow position:chr29:1742941-1742736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:168
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):35, 99

               
               
               Conread position:2-210
               
               
               Cow position:chr29:35076562-35076356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:170
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-231
               
               
               Cow position:chr29:10032216-10032449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:182
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):35, 191

               
               
               Conread position:2-239
               
               
               Cow position:chr29:5785932-5785691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:189
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-248
               
               
               Cow position:chr29:28696941-28697191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 184

               
               
               Conread position:2-249
               
               
               Cow position:chr29:5961441-5961192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:191
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-249
               
               
               Cow position:chr29:24951907-24951657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 60

               
               
               Conread position:2-250
               
               
               Cow position:chr29:32316507-32316256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:187
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-253
               
               
               Cow position:chr29:10643977-10644229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 93

               
               
               Conread position:2-253
               
               
               Cow position:chr29:13585647-13585398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:197
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):35, 89

               
               
               Conread position:2-253
               
               
               Cow position:chr29:16035979-16036234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-253
               
               
               Cow position:chr29:16065148-16064893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:192
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-253
               
               
               Cow position:chr29:16347650-16347384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):35, 77

               
               
               Conread position:2-253
               
               
               Cow position:chr29:39076280-39076536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr29:45026-45282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 184

               
               
               Conread position:2-256
               
               
               Cow position:chr29:727167-726909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr29:1478889-1478632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 191

               
               
               Conread position:2-256
               
               
               Cow position:chr29:1688180-1687928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:195
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):35, 96

               
               
               Conread position:2-256
               
               
               Cow position:chr29:2402124-2401868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:191
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):36, 71

               
               
               Conread position:2-256
               
               
               Cow position:chr29:2837898-2838156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr29:3330030-3329772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr29:4164126-4163868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr29:5240833-5240574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 49

               
               
               Conread position:2-256
               
               
               Cow position:chr29:6262571-6262829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 179

               
               
               Conread position:2-256
               
               
               Cow position:chr29:6934921-6934669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 184

               
               
               Conread position:2-256
               
               
               Cow position:chr29:7427704-7427962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 191

               
               
               Conread position:2-256
               
               
               Cow position:chr29:7811758-7812017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr29:7847830-7847572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr29:8623770-8624016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:189
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):33, 184

               
               
               Conread position:2-256
               
               
               Cow position:chr29:10820277-10820535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 184

               
               
               Conread position:2-256
               
               
               Cow position:chr29:11119274-11119532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr29:13128835-13128589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:196
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):35, 124

               
               
               Conread position:2-256
               
               
               Cow position:chr29:13623936-13624194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr29:14313712-14313969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 93

               
               
               Conread position:2-256
               
               
               Cow position:chr29:15072043-15072301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr29:15966116-15966374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:195
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):36, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr29:16097250-16096992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr29:16185341-16185599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr29:18011013-18010755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr29:19657319-19657061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 184

               
               
               Conread position:2-256
               
               
               Cow position:chr29:19891003-19890748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:194
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):35, 120

               
               
               Conread position:2-256
               
               
               Cow position:chr29:20254602-20254346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 153

               
               
               Conread position:2-256
               
               
               Cow position:chr29:21227413-21227156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr29:21255389-21255137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:189
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):36, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr29:21474587-21474329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr29:22279810-22279554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 173

               
               
               Conread position:2-256
               
               
               Cow position:chr29:22746338-22746080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr29:24806893-24806636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr29:24983133-24983387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 104

               
               
               Conread position:2-256
               
               
               Cow position:chr29:25929070-25929327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 186

               
               
               Conread position:2-256
               
               
               Cow position:chr29:26161397-26161653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 71

               
               
               Conread position:2-256
               
               
               Cow position:chr29:27702515-27702257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 191

               
               
               Conread position:2-256
               
               
               Cow position:chr29:27976567-27976825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:191
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr29:31184814-31184556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr29:32353033-32352777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:192
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 193

               
               
               Conread position:2-256
               
               
               Cow position:chr29:32515766-32515508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr29:32543575-32543318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 42

               
               
               Conread position:2-256
               
               
               Cow position:chr29:32556306-32556564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr29:34780547-34780806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):35, 190

               
               
               Conread position:2-256
               
               
               Cow position:chr29:34851192-34850937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 119

               
               
               Conread position:2-256
               
               
               Cow position:chr29:35002236-35002494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 184

               
               
               Conread position:2-256
               
               
               Cow position:chr29:35265355-35265097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr29:35273601-35273859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr29:35955868-35956122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 119

               
               
               Conread position:2-256
               
               
               Cow position:chr29:36633921-36634169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 46

               
               
               Conread position:2-256
               
               
               Cow position:chr29:38229445-38229187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr29:38349924-38350174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 61

               
               
               Conread position:2-256
               
               
               Cow position:chr29:38409635-38409375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr29:40157182-40156924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr29:40294745-40294487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr29:40498438-40498696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr29:42255540-42255798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr29:42807422-42807171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:188
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):35, 66

               
               
               Conread position:2-256
               
               
               Cow position:chr29:43326952-43326694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-257
               
               
               Cow position:chr29:19619831-19620089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 191

               
               
               Conread position:2-257
               
               
               Cow position:chr29:31765478-31765219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 192

               
               
               Conread position:2-264
               
               
               Cow position:chr29:23980148-23979884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-266
               
               
               Cow position:chr29:14208130-14208398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:198
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):36, 73

               
               
               Conread position:2-275
               
               
               Cow position:chr29:16101680-16101957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:204
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):36, 269

               
               
               Conread position:2-275
               
               
               Cow position:chr29:40618417-40618698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):35, 191

               
               
               Conread position:3-189
               
               
               Cow position:chr29:19761495-19761309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):123, 140

               
               
               Conread position:3-241
               
               
               Cow position:chr29:960638-960396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:191
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 187

               
               
               Conread position:3-253
               
               
               Cow position:chr29:21429423-21429677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 186

               
               
               Conread position:3-253
               
               
               Cow position:chr29:34794422-34794680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:200
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):34, 187

               
               
               Conread position:3-256
               
               
               Cow position:chr29:2103279-2103027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:196
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):35, 125

               
               
               Conread position:3-256
               
               
               Cow position:chr29:6218374-6218626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:193
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):23, 49

               
               
               Conread position:3-256
               
               
               Cow position:chr29:6871847-6872097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:191
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 127

               
               
               Conread position:3-256
               
               
               Cow position:chr29:9079360-9079617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:192
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:3-256
               
               
               Cow position:chr29:9639092-9639350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:3-256
               
               
               Cow position:chr29:13027654-13027402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):34, 55

               
               
               Conread position:3-256
               
               
               Cow position:chr29:21535486-21535739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):32, 65

               
               
               Conread position:3-256
               
               
               Cow position:chr29:28656931-28657188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 187

               
               
               Conread position:3-256
               
               
               Cow position:chr29:32732535-32732280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:198
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):123, 33

               
               
               Conread position:3-256
               
               
               Cow position:chr29:43964123-43964378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):34, 144

               
               
               Conread position:3-256
               
               
               Cow position:chr29:45651108-45651361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 31

               
               
               Conread position:3-265
               
               
               Cow position:chr29:24578089-24577824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):124, 155

               
               
               Conread position:3-273
               
               
               Cow position:chr29:7664563-7664835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):34, 78

               
               
               Conread position:3-291
               
               
               Cow position:chr29:35739264-35739558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 165

               
               
               Conread position:4-235
               
               
               Cow position:chr29:34806406-34806621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):193, 20

               
               
               Conread position:4-256
               
               
               Cow position:chr29:607212-607457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:193
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):33, 184

               
               
               Conread position:4-256
               
               
               Cow position:chr29:32292030-32291774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 187

               
               
               Conread position:5-256
               
               
               Cow position:chr29:32289819-32289571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 165

               
               
               Conread position:6-253
               
               
               Cow position:chr29:27007318-27007078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:182
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):120, 152

               
               
               Conread position:8-185
               
               
               Cow position:chr29:21445906-21446085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):31, 143

               
               
               Conread position:8-252
               
               
               Cow position:chr29:32643987-32643751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):29, 82

               
               
               Conread position:8-257
               
               
               Cow position:chr29:45207940-45207689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):29, 183

               
               
               Conread position:9-247
               
               
               Cow position:chr29:19514914-19515157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:184
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:9-253
               
               
               Cow position:chr29:32800699-32800458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:188
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):28, 81

               
               
               Conread position:9-256
               
               
               Cow position:chr29:649464-649232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):28, 118

               
               
               Conread position:9-256
               
               
               Cow position:chr29:2745077-2745322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:190
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):28, 79

               
               
               Conread position:9-256
               
               
               Cow position:chr29:15943779-15943532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:188
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):28, 112

               
               
               Conread position:10-253
               
               
               Cow position:chr29:17408556-17408315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 111

               
               
               Conread position:10-256
               
               
               Cow position:chr29:30432765-30433012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:193
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 81

               
               
               Conread position:15-233
               
               
               Cow position:chr29:42940403-42940184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):22, 37

               
               
               Conread position:15-268
               
               
               Cow position:chr29:4864745-4864482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):14, 129

               
               
               Conread position:15-271
               
               
               Cow position:chr29:11786427-11786171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:192
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):22, 150

               
               
               Conread position:17-250
               
               
               Cow position:chr29:34737279-34737506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:161
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):26, 46

               
               
               Conread position:18-256
               
               
               Cow position:chr29:13849524-13849767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:193
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 77

               
               
               Conread position:26-265
               
               
               Cow position:chr29:45626750-45626512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):11, 25

               
               
               Conread position:28-252
               
               
               Cow position:chr29:5977908-5978134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:29-256
               
               
               Cow position:chr29:34331017-34331248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:46-247
               
               
               Cow position:chr29:26997242-26997041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):164, 111

               
               
               Conread position:53-256
               
               
               Cow position:chr29:4200763-4200558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:158
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):73, 16

               
               
               Conread position:57-253
               
               
               Cow position:chr29:29589613-29589813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:142
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:60-256
               
               
               Cow position:chr29:15117450-15117646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):138, 14

               
               
               Conread position:62-252
               
               
               Cow position:chr29:2184780-2184599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):64, 42

               
               
               Conread position:63-239
               
               
               Cow position:chr29:5787116-5787295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):64, 126

               
               
               Conread position:68-265
               
               
               Cow position:chr29:21325789-21325969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):58, 89

               
               
               Conread position:83-256
               
               
               Cow position:chr29:38746404-38746228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:139
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):44, 107

               
               
               Conread position:89-252
               
               
               Cow position:chr29:2463522-2463688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:1-250
               
               
               Cow position:chr3:73637232-73636980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 112

               
               
               Conread position:1-256
               
               
               Cow position:chr3:13723359-13723618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 189

               
               
               Conread position:1-256
               
               
               Cow position:chr3:21178904-21179165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 192

               
               
               Conread position:1-256
               
               
               Cow position:chr3:21593635-21593378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 89

               
               
               Conread position:1-256
               
               
               Cow position:chr3:31022032-31021776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 61

               
               
               Conread position:1-256
               
               
               Cow position:chr3:46753199-46752940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 190

               
               
               Conread position:1-256
               
               
               Cow position:chr3:50204917-50204659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 192

               
               
               Conread position:1-256
               
               
               Cow position:chr3:54653822-54654081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 185

               
               
               Conread position:1-256
               
               
               Cow position:chr3:56148648-56148386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:1-265
               
               
               Cow position:chr3:12750249-12749986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:200
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):36, 21

               
               
               Conread position:1-274
               
               
               Cow position:chr3:21005169-21004891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 260

               
               
               Conread position:2-165
               
               
               Cow position:chr3:39878827-39878991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:137
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-183
               
               
               Cow position:chr3:11784711-11784532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):35, 61

               
               
               Conread position:2-183
               
               
               Cow position:chr3:17864781-17864598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:149
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):35, 160

               
               
               Conread position:2-186
               
               
               Cow position:chr3:72390268-72390084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:154
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):35, 8

               
               
               Conread position:2-187
               
               
               Cow position:chr3:14613379-14613197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:153
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):35, 80

               
               
               Conread position:2-187
               
               
               Cow position:chr3:40205755-40205568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:148
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-187
               
               
               Cow position:chr3:80818170-80817981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):33, 7

               
               
               Conread position:2-189
               
               
               Cow position:chr3:59118427-59118616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:151
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:2-190
               
               
               Cow position:chr3:14724466-14724281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:158
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):124, 32

               
               
               Conread position:2-190
               
               
               Cow position:chr3:68500811-68500621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-210
               
               
               Cow position:chr3:65536466-65536260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:162
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-210
               
               
               Cow position:chr3:69271953-69271747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:167
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-210
               
               
               Cow position:chr3:70215523-70215317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:164
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-211
               
               
               Cow position:chr3:20999720-20999927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:166
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-231
               
               
               Cow position:chr3:64655560-64655329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:184
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):35, 130

               
               
               Conread position:2-237
               
               
               Cow position:chr3:23010707-23010466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:187
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):35, 193

               
               
               Conread position:2-250
               
               
               Cow position:chr3:14280031-14279786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:191
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):35, 94

               
               
               Conread position:2-251
               
               
               Cow position:chr3:47272527-47272781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 185

               
               
               Conread position:2-251
               
               
               Cow position:chr3:53788200-53787947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-252
               
               
               Cow position:chr3:33124903-33125157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 187

               
               
               Conread position:2-252
               
               
               Cow position:chr3:40336794-40337048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-252
               
               
               Cow position:chr3:57456296-57456056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):35, 117

               
               
               Conread position:2-253
               
               
               Cow position:chr3:2117797-2117543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 47

               
               
               Conread position:2-253
               
               
               Cow position:chr3:26722460-26722715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-253
               
               
               Cow position:chr3:35043511-35043256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-253
               
               
               Cow position:chr3:39327896-39327645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 7

               
               
               Conread position:2-253
               
               
               Cow position:chr3:42846696-42846443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr3:302573-302325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):35, 145

               
               
               Conread position:2-256
               
               
               Cow position:chr3:579524-579268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:188
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):35, 130

               
               
               Conread position:2-256
               
               
               Cow position:chr3:597459-597203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:193
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 235

               
               
               Conread position:2-256
               
               
               Cow position:chr3:822738-822996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr3:1739521-1739779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:190
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr3:2075132-2074876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 164

               
               
               Conread position:2-256
               
               
               Cow position:chr3:2432303-2432559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 66

               
               
               Conread position:2-256
               
               
               Cow position:chr3:2572879-2572621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:197
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr3:2834187-2834445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr3:2866303-2866561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr3:3552668-3552416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 125

               
               
               Conread position:2-256
               
               
               Cow position:chr3:3652950-3653193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:190
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):35, 84

               
               
               Conread position:2-256
               
               
               Cow position:chr3:5887235-5886980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):124, 47

               
               
               Conread position:2-256
               
               
               Cow position:chr3:5951272-5951522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:190
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):35, 115

               
               
               Conread position:2-256
               
               
               Cow position:chr3:6442420-6442162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr3:6529344-6529086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 191

               
               
               Conread position:2-256
               
               
               Cow position:chr3:6785668-6785411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 56

               
               
               Conread position:2-256
               
               
               Cow position:chr3:6838381-6838123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr3:6865010-6864754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr3:7155455-7155713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr3:7245754-7246010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr3:7476568-7476826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 150

               
               
               Conread position:2-256
               
               
               Cow position:chr3:10244011-10243753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr3:11384664-11384412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:197
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):35, 117

               
               
               Conread position:2-256
               
               
               Cow position:chr3:11417898-11417640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr3:12665489-12665231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr3:12797710-12797957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:191
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr3:13035144-13035402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr3:13248672-13248926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:193
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 119

               
               
               Conread position:2-256
               
               
               Cow position:chr3:13275926-13276188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:193
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr3:14212742-14212484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr3:14438636-14438890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:187
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):35, 151

               
               
               Conread position:2-256
               
               
               Cow position:chr3:15416818-15416560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr3:16226226-16225971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:193
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 231

               
               
               Conread position:2-256
               
               
               Cow position:chr3:18814857-18814600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 187

               
               
               Conread position:2-256
               
               
               Cow position:chr3:18862792-18862534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 216

               
               
               Conread position:2-256
               
               
               Cow position:chr3:19753383-19753633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr3:19881401-19881143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr3:19883810-19883564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:191
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):35, 95

               
               
               Conread position:2-256
               
               
               Cow position:chr3:20379367-20379623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 153

               
               
               Conread position:2-256
               
               
               Cow position:chr3:20475859-20475608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 157

               
               
               Conread position:2-256
               
               
               Cow position:chr3:20795645-20795387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr3:23204325-23204580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 185

               
               
               Conread position:2-256
               
               
               Cow position:chr3:23286985-23287241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr3:24265550-24265292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr3:24442751-24443009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr3:24572815-24573073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr3:26742521-26742779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr3:27245342-27245596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 157

               
               
               Conread position:2-256
               
               
               Cow position:chr3:28435347-28435605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr3:29130444-29130189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:193
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):35, 75

               
               
               Conread position:2-256
               
               
               Cow position:chr3:29573776-29574032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):125, 32

               
               
               Conread position:2-256
               
               
               Cow position:chr3:30321608-30321351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr3:30351627-30351369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr3:30615589-30615843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 191

               
               
               Conread position:2-256
               
               
               Cow position:chr3:30623226-30622967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr3:30938850-30938590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:187
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):32, 48

               
               
               Conread position:2-256
               
               
               Cow position:chr3:31422770-31423033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:196
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr3:32490361-32490619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr3:32769136-32768884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:197
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):35, 96

               
               
               Conread position:2-256
               
               
               Cow position:chr3:34015763-34015505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr3:34503784-34504029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:195
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):35, 59

               
               
               Conread position:2-256
               
               
               Cow position:chr3:35109578-35109320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr3:35343002-35342744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr3:35612498-35612248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 191

               
               
               Conread position:2-256
               
               
               Cow position:chr3:35619904-35619651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 183

               
               
               Conread position:2-256
               
               
               Cow position:chr3:35918911-35918658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:197
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):35, 153

               
               
               Conread position:2-256
               
               
               Cow position:chr3:36121527-36121269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 187

               
               
               Conread position:2-256
               
               
               Cow position:chr3:36417091-36416833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr3:36861752-36862006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 106

               
               
               Conread position:2-256
               
               
               Cow position:chr3:36874709-36874967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr3:37894183-37893925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr3:37972380-37972128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 94

               
               
               Conread position:2-256
               
               
               Cow position:chr3:38096252-38095993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 182

               
               
               Conread position:2-256
               
               
               Cow position:chr3:40049240-40048983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr3:40520588-40520846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr3:40826748-40826492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 184

               
               
               Conread position:2-256
               
               
               Cow position:chr3:41018959-41019220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:201
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):35, 191

               
               
               Conread position:2-256
               
               
               Cow position:chr3:42507862-42508115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:199
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):35, 88

               
               
               Conread position:2-256
               
               
               Cow position:chr3:43525388-43525645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 93

               
               
               Conread position:2-256
               
               
               Cow position:chr3:45675426-45675684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr3:45977851-45977596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 184

               
               
               Conread position:2-256
               
               
               Cow position:chr3:46857932-46858190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr3:47078261-47078519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:197
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr3:48273130-48272875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 128

               
               
               Conread position:2-256
               
               
               Cow position:chr3:49564368-49564110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr3:49605090-49605348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr3:49732445-49732701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 88

               
               
               Conread position:2-256
               
               
               Cow position:chr3:49907681-49907939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr3:49931187-49930929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr3:49999487-49999230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 187

               
               
               Conread position:2-256
               
               
               Cow position:chr3:53879915-53880173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr3:55245895-55245637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr3:56297736-56297478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 187

               
               
               Conread position:2-256
               
               
               Cow position:chr3:56697189-56696942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:192
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):35, 99

               
               
               Conread position:2-256
               
               
               Cow position:chr3:57481394-57481643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:191
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):33, 64

               
               
               Conread position:2-256
               
               
               Cow position:chr3:59603153-59602895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr3:59864831-59864576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 184

               
               
               Conread position:2-256
               
               
               Cow position:chr3:60184819-60185077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 190

               
               
               Conread position:2-256
               
               
               Cow position:chr3:64024679-64024938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 190

               
               
               Conread position:2-256
               
               
               Cow position:chr3:64376364-64376617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):124, 24

               
               
               Conread position:2-256
               
               
               Cow position:chr3:64654020-64653762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr3:64876124-64875867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 136

               
               
               Conread position:2-256
               
               
               Cow position:chr3:65085285-65085028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 60

               
               
               Conread position:2-256
               
               
               Cow position:chr3:65989261-65989015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):124, 38

               
               
               Conread position:2-256
               
               
               Cow position:chr3:66829594-66829845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:198
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):124, 38

               
               
               Conread position:2-256
               
               
               Cow position:chr3:66887846-66888102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:192
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr3:66968528-66968785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr3:68274192-68273934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr3:68509987-68510242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 119

               
               
               Conread position:2-256
               
               
               Cow position:chr3:68696614-68696871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 174

               
               
               Conread position:2-256
               
               
               Cow position:chr3:68717358-68717616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr3:68870398-68870656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr3:68889221-68889478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 88

               
               
               Conread position:2-256
               
               
               Cow position:chr3:69930485-69930740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:192
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 73

               
               
               Conread position:2-256
               
               
               Cow position:chr3:72174954-72175212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 187

               
               
               Conread position:2-256
               
               
               Cow position:chr3:72633424-72633167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 56

               
               
               Conread position:2-256
               
               
               Cow position:chr3:72669208-72669468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 191

               
               
               Conread position:2-256
               
               
               Cow position:chr3:74060821-74060563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr3:75038490-75038748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr3:75997537-75997795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr3:76864783-76864525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr3:78520399-78520141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr3:79668462-79668204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr3:83767597-83767347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:192
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-257
               
               
               Cow position:chr3:43189921-43190177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 22

               
               
               Conread position:2-265
               
               
               Cow position:chr3:2707522-2707783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 210

               
               
               Conread position:2-265
               
               
               Cow position:chr3:14864234-14863970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 193

               
               
               Conread position:2-265
               
               
               Cow position:chr3:23216983-23217238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:205
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):35, 55

               
               
               Conread position:2-265
               
               
               Cow position:chr3:33269575-33269317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:206
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):35, 22

               
               
               Conread position:2-265
               
               
               Cow position:chr3:42186820-42186555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):124, 256

               
               
               Conread position:2-265
               
               
               Cow position:chr3:52149934-52150200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 257

               
               
               Conread position:2-265
               
               
               Cow position:chr3:56160474-56160730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:194
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):34, 115

               
               
               Conread position:2-265
               
               
               Cow position:chr3:81101430-81101164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 187

               
               
               Conread position:2-266
               
               
               Cow position:chr3:73450962-73451229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 187

               
               
               Conread position:2-270
               
               
               Cow position:chr3:3837254-3837515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:203
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):124, 31

               
               
               Conread position:2-270
               
               
               Cow position:chr3:47986791-47986517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-272
               
               
               Cow position:chr3:38869918-38869642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 174

               
               
               Conread position:2-274
               
               
               Cow position:chr3:75771783-75772061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-275
               
               
               Cow position:chr3:42977241-42977518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):125, 0

               
               
               Conread position:2-276
               
               
               Cow position:chr3:3300993-3300719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 110

               
               
               Conread position:2-283
               
               
               Cow position:chr3:53519155-53518868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 184

               
               
               Conread position:2-286
               
               
               Cow position:chr3:21779426-21779711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-302
               
               
               Cow position:chr3:22724419-22724729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:233
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):35, 90

               
               
               Conread position:3-153
               
               
               Cow position:chr3:16156873-16156722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:134
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):34, 55

               
               
               Conread position:3-186
               
               
               Cow position:chr3:37600081-37599900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:153
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):34, 51

               
               
               Conread position:3-189
               
               
               Cow position:chr3:25753603-25753417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:147
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):34, 60

               
               
               Conread position:3-190
               
               
               Cow position:chr3:58766494-58766305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:3-223
               
               
               Cow position:chr3:33254511-33254732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:173
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 190

               
               
               Conread position:3-248
               
               
               Cow position:chr3:54087025-54087264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:185
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):35, 88

               
               
               Conread position:3-252
               
               
               Cow position:chr3:34464714-34464465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 60

               
               
               Conread position:3-252
               
               
               Cow position:chr3:49463199-49463457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):34, 197

               
               
               Conread position:3-253
               
               
               Cow position:chr3:16293566-16293812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:193
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 155

               
               
               Conread position:3-253
               
               
               Cow position:chr3:57742863-57742610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 158

               
               
               Conread position:3-253
               
               
               Cow position:chr3:59332934-59332678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:180
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):34, 71

               
               
               Conread position:3-256
               
               
               Cow position:chr3:2904107-2904349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 59

               
               
               Conread position:3-256
               
               
               Cow position:chr3:3984460-3984202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):32, 197

               
               
               Conread position:3-256
               
               
               Cow position:chr3:5474890-5474633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 187

               
               
               Conread position:3-256
               
               
               Cow position:chr3:12676289-12676548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:180
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):38, 20

               
               
               Conread position:3-256
               
               
               Cow position:chr3:13117711-13117959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 129

               
               
               Conread position:3-256
               
               
               Cow position:chr3:14285084-14284829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 139

               
               
               Conread position:3-256
               
               
               Cow position:chr3:18886808-18886553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:192
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:3-256
               
               
               Cow position:chr3:19717918-19718173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:190
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):33, 161

               
               
               Conread position:3-256
               
               
               Cow position:chr3:19942241-19941986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:193
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 105

               
               
               Conread position:3-256
               
               
               Cow position:chr3:22352964-22352711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):34, 138

               
               
               Conread position:3-256
               
               
               Cow position:chr3:30909167-30908897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:191
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):34, 102

               
               
               Conread position:3-256
               
               
               Cow position:chr3:35884770-35885027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:3-256
               
               
               Cow position:chr3:43084590-43084336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 118

               
               
               Conread position:3-256
               
               
               Cow position:chr3:44927168-44926907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:191
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:3-256
               
               
               Cow position:chr3:46506119-46505862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:3-256
               
               
               Cow position:chr3:49387999-49387746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 190

               
               
               Conread position:3-256
               
               
               Cow position:chr3:50347158-50346917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):34, 135

               
               
               Conread position:3-256
               
               
               Cow position:chr3:53047441-53047699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:3-256
               
               
               Cow position:chr3:55895303-55895049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):34, 94

               
               
               Conread position:3-256
               
               
               Cow position:chr3:61677885-61677632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 54

               
               
               Conread position:3-256
               
               
               Cow position:chr3:63148290-63148545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:191
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):34, 183

               
               
               Conread position:3-256
               
               
               Cow position:chr3:73416349-73416091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:179
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:3-265
               
               
               Cow position:chr3:16114757-16114491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):34, 257

               
               
               Conread position:3-265
               
               
               Cow position:chr3:18353018-18353285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:187
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):34, 174

               
               
               Conread position:3-265
               
               
               Cow position:chr3:19794741-19795006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 256

               
               
               Conread position:3-265
               
               
               Cow position:chr3:23497407-23497672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 188

               
               
               Conread position:3-265
               
               
               Cow position:chr3:24638756-24638497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:197
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):34, 55

               
               
               Conread position:3-272
               
               
               Cow position:chr3:3031582-3031314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 135

               
               
               Conread position:3-272
               
               
               Cow position:chr3:27454586-27454852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:205
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):34, 118

               
               
               Conread position:3-274
               
               
               Cow position:chr3:39214726-39214451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:186
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):21, 257

               
               
               Conread position:3-275
               
               
               Cow position:chr3:77697124-77697382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:200
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):34, 97

               
               
               Conread position:3-281
               
               
               Cow position:chr3:42500413-42500141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:205
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):31, 43

               
               
               Conread position:3-303
               
               
               Cow position:chr3:45184637-45184943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 23

               
               
               Conread position:4-187
               
               
               Cow position:chr3:76136671-76136483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:164
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:4-252
               
               
               Cow position:chr3:34116014-34116274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:188
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):52, 35

               
               
               Conread position:4-252
               
               
               Cow position:chr3:37486700-37486944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):32, 48

               
               
               Conread position:4-252
               
               
               Cow position:chr3:46683183-46682931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 186

               
               
               Conread position:4-257
               
               
               Cow position:chr3:49416497-49416754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 187

               
               
               Conread position:5-186
               
               
               Cow position:chr3:22220489-22220306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:145
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:5-256
               
               
               Cow position:chr3:14466512-14466768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:193
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):31, 191

               
               
               Conread position:6-256
               
               
               Cow position:chr3:1034211-1033956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:186
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:8-256
               
               
               Cow position:chr3:78024090-78024342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 178

               
               
               Conread position:9-187
               
               
               Cow position:chr3:74391566-74391741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):28, 23

               
               
               Conread position:9-253
               
               
               Cow position:chr3:13311659-13311909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:189
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:9-253
               
               
               Cow position:chr3:76187883-76187636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:190
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 197

               
               
               Conread position:9-253
               
               
               Cow position:chr3:79595977-79595732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:188
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):117, 216

               
               
               Conread position:9-256
               
               
               Cow position:chr3:2791096-2790845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 184

               
               
               Conread position:9-256
               
               
               Cow position:chr3:6897171-6896920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:181
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):26, 183

               
               
               Conread position:9-256
               
               
               Cow position:chr3:31224620-31224372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 121

               
               
               Conread position:9-256
               
               
               Cow position:chr3:31418878-31418630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:186
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 149

               
               
               Conread position:9-256
               
               
               Cow position:chr3:49610862-49611114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 183

               
               
               Conread position:9-256
               
               
               Cow position:chr3:58950804-58950555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:190
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 9

               
               
               Conread position:9-256
               
               
               Cow position:chr3:68344001-68344233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):27, 91

               
               
               Conread position:10-223
               
               
               Cow position:chr3:22235157-22235372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:176
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):23, 167

               
               
               Conread position:10-272
               
               
               Cow position:chr3:19947545-19947291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:193
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):25, 14

               
               
               Conread position:13-184
               
               
               Cow position:chr3:35056317-35056145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:148
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 77

               
               
               Conread position:14-253
               
               
               Cow position:chr3:2365567-2365800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:181
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):23, 87

               
               
               Conread position:14-256
               
               
               Cow position:chr3:27782983-27783212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):22, 55

               
               
               Conread position:14-256
               
               
               Cow position:chr3:31396711-31396467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:187
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 149

               
               
               Conread position:14-256
               
               
               Cow position:chr3:32412147-32412392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):113, 176

               
               
               Conread position:14-256
               
               
               Cow position:chr3:56484920-56485166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:190
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):21, 176

               
               
               Conread position:14-256
               
               
               Cow position:chr3:65473769-65473524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:186
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:15-186
               
               
               Cow position:chr3:60932604-60932433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):22, 43

               
               
               Conread position:15-252
               
               
               Cow position:chr3:80872270-80872030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:166
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):21, 150

               
               
               Conread position:15-256
               
               
               Cow position:chr3:34557039-34557276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 83

               
               
               Conread position:15-256
               
               
               Cow position:chr3:49134198-49134443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 171

               
               
               Conread position:15-256
               
               
               Cow position:chr3:52725937-52726174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):22, 128

               
               
               Conread position:15-272
               
               
               Cow position:chr3:70913929-70914184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:197
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):22, 43

               
               
               Conread position:15-302
               
               
               Cow position:chr3:66736234-66736524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):112, 25

               
               
               Conread position:16-250
               
               
               Cow position:chr3:24531034-24530801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):21, 93

               
               
               Conread position:17-256
               
               
               Cow position:chr3:38497130-38496890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):20, 147

               
               
               Conread position:17-264
               
               
               Cow position:chr3:63202574-63202327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):20, 176

               
               
               Conread position:18-216
               
               
               Cow position:chr3:51235167-51235352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):19, 9

               
               
               Conread position:18-256
               
               
               Cow position:chr3:48240591-48240346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:189
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):84, 176

               
               
               Conread position:18-257
               
               
               Cow position:chr3:35509185-35508946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):19, 103

               
               
               Conread position:18-266
               
               
               Cow position:chr3:50461645-50461407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:187
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):20, 56

               
               
               Conread position:19-256
               
               
               Cow position:chr3:69962511-69962753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:180
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:20-252
               
               
               Cow position:chr3:2851912-2852139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:179
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):23, 97

               
               
               Conread position:20-257
               
               
               Cow position:chr3:77226065-77225827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:173
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):17, 38

               
               
               Conread position:21-256
               
               
               Cow position:chr3:25057014-25056786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:180
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):16, 41

               
               
               Conread position:25-256
               
               
               Cow position:chr3:63238707-63238936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:167
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):12, 117

               
               
               Conread position:26-256
               
               
               Cow position:chr3:4191609-4191843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:181
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):11, 165

               
               
               Conread position:26-256
               
               
               Cow position:chr3:31120809-31121043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:180
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:27-256
               
               
               Cow position:chr3:76000636-76000867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:182
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 85

               
               
               Conread position:34-256
               
               
               Cow position:chr3:48603571-48603346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:176
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):92, 151

               
               
               Conread position:37-256
               
               
               Cow position:chr3:39856779-39856557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:175
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):89, 148

               
               
               Conread position:42-252
               
               
               Cow position:chr3:44101362-44101150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):89, 9

               
               
               Conread position:44-253
               
               
               Cow position:chr3:18759114-18759325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:160
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):82, 13

               
               
               Conread position:45-255
               
               
               Cow position:chr3:64318058-64317844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):17, 57

               
               
               Conread position:45-256
               
               
               Cow position:chr3:42602965-42602750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:160
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):13, 122

               
               
               Conread position:46-256
               
               
               Cow position:chr3:57996865-57996652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:165
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):81, 144

               
               
               Conread position:47-266
               
               
               Cow position:chr3:51548065-51547843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:172
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):80, 143

               
               
               Conread position:48-256
               
               
               Cow position:chr3:84199084-84198876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):143, 72

               
               
               Conread position:49-236
               
               
               Cow position:chr3:7481203-7481388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:151
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):46, 78

               
               
               Conread position:49-256
               
               
               Cow position:chr3:22339210-22339002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):163, 40

               
               
               Conread position:49-256
               
               
               Cow position:chr3:37280699-37280489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):78, 141

               
               
               Conread position:49-272
               
               
               Cow position:chr3:63000078-63000289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):161, 54

               
               
               Conread position:51-253
               
               
               Cow position:chr3:57555071-57554871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:161
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):40, 16

               
               
               Conread position:51-256
               
               
               Cow position:chr3:6854325-6854533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:159
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:57-264
               
               
               Cow position:chr3:33691754-33691963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:158
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):70, 201

               
               
               Conread position:59-253
               
               
               Cow position:chr3:58034350-58034540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):148, 31

               
               
               Conread position:60-210
               
               
               Cow position:chr3:2366273-2366420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):67, 129

               
               
               Conread position:80-256
               
               
               Cow position:chr3:6714281-6714101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):21, 111

               
               
               Conread position:85-256
               
               
               Cow position:chr3:19797884-19798058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):41, 104

               
               
               Conread position:91-256
               
               
               Cow position:chr3:32211025-32211191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:128
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):118, 48

               
               
               Conread position:97-265
               
               
               Cow position:chr3:13115187-13115351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:131
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):115, 33

               
               
               Conread position:104-256
               
               
               Cow position:chr3:45947574-45947722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:120
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):23, 91

               
               
               Conread position:1-256
               
               
               Cow position:chr4:8673879-8673637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):36, 8

               
               
               Conread position:1-256
               
               
               Cow position:chr4:10553401-10553147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 63

               
               
               Conread position:1-256
               
               
               Cow position:chr4:21843363-21843621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 15

               
               
               Conread position:1-274
               
               
               Cow position:chr4:28835716-28835446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 169

               
               
               Conread position:1-302
               
               
               Cow position:chr4:12238075-12238382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 193

               
               
               Conread position:2-181
               
               
               Cow position:chr4:11918795-11918975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):35, 119

               
               
               Conread position:2-209
               
               
               Cow position:chr4:63195423-63195627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:161
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):35, 47

               
               
               Conread position:2-210
               
               
               Cow position:chr4:1007049-1006844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:167
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):35, 101

               
               
               Conread position:2-210
               
               
               Cow position:chr4:54758098-54758304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:166
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):35, 184

               
               
               Conread position:2-219
               
               
               Cow position:chr4:3129012-3128794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:164
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:2-236
               
               
               Cow position:chr4:61192138-61191907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:176
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):33, 124

               
               
               Conread position:2-248
               
               
               Cow position:chr4:533447-533197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-250
               
               
               Cow position:chr4:16641975-16641723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-252
               
               
               Cow position:chr4:3961739-3961985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:188
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):35, 136

               
               
               Conread position:2-252
               
               
               Cow position:chr4:15802682-15802936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-252
               
               
               Cow position:chr4:23304184-23304438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-253
               
               
               Cow position:chr4:2349562-2349811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 187

               
               
               Conread position:2-253
               
               
               Cow position:chr4:10884795-10884542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 76

               
               
               Conread position:2-253
               
               
               Cow position:chr4:26399943-26399692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 7

               
               
               Conread position:2-253
               
               
               Cow position:chr4:33496716-33496464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:195
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):35, 111

               
               
               Conread position:2-256
               
               
               Cow position:chr4:162237-161981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 76

               
               
               Conread position:2-256
               
               
               Cow position:chr4:359039-358784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 191

               
               
               Conread position:2-256
               
               
               Cow position:chr4:1927478-1927736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr4:2003411-2003655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:193
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):35, 92

               
               
               Conread position:2-256
               
               
               Cow position:chr4:2226607-2226864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 107

               
               
               Conread position:2-256
               
               
               Cow position:chr4:3354785-3355038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:201
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):35, 172

               
               
               Conread position:2-256
               
               
               Cow position:chr4:4379530-4379283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 192

               
               
               Conread position:2-256
               
               
               Cow position:chr4:4419207-4418945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr4:4850498-4850240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr4:6034870-6035128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:193
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr4:6266059-6266315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr4:6806464-6806206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr4:6863077-6863332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 26

               
               
               Conread position:2-256
               
               
               Cow position:chr4:7048913-7049164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:190
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):125, 34

               
               
               Conread position:2-256
               
               
               Cow position:chr4:7779557-7779299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr4:8677958-8677700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr4:9041103-9040845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr4:9357395-9357137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr4:10135048-10135303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 20

               
               
               Conread position:2-256
               
               
               Cow position:chr4:10403558-10403816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr4:10424649-10424391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr4:11217911-11217662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr4:15617851-15617593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr4:15814144-15814395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):125, 21

               
               
               Conread position:2-256
               
               
               Cow position:chr4:16363357-16363099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr4:17033344-17033602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 216

               
               
               Conread position:2-256
               
               
               Cow position:chr4:17067956-17068209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 78

               
               
               Conread position:2-256
               
               
               Cow position:chr4:17235177-17234920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 16

               
               
               Conread position:2-256
               
               
               Cow position:chr4:18004871-18004613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr4:18331243-18330985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr4:18335794-18336051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 88

               
               
               Conread position:2-256
               
               
               Cow position:chr4:18813053-18813311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 184

               
               
               Conread position:2-256
               
               
               Cow position:chr4:19049418-19049160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 207

               
               
               Conread position:2-256
               
               
               Cow position:chr4:19957184-19956924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr4:20243313-20243055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr4:20616561-20616819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 191

               
               
               Conread position:2-256
               
               
               Cow position:chr4:20656908-20657162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:196
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):35, 22

               
               
               Conread position:2-256
               
               
               Cow position:chr4:21297623-21297882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 199

               
               
               Conread position:2-256
               
               
               Cow position:chr4:21342230-21341972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr4:25596328-25596586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 184

               
               
               Conread position:2-256
               
               
               Cow position:chr4:26885766-26886024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr4:27177983-27177727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr4:30508355-30508098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:189
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):33, 163

               
               
               Conread position:2-256
               
               
               Cow position:chr4:30540510-30540768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr4:33020475-33020733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr4:33171313-33171055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr4:33628875-33629133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr4:33831273-33831531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr4:34712973-34712716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:193
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 15

               
               
               Conread position:2-256
               
               
               Cow position:chr4:36026114-36026371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 187

               
               
               Conread position:2-256
               
               
               Cow position:chr4:36074177-36073920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 145

               
               
               Conread position:2-256
               
               
               Cow position:chr4:36899534-36899276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 190

               
               
               Conread position:2-256
               
               
               Cow position:chr4:38153143-38153405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr4:38564537-38564795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 191

               
               
               Conread position:2-256
               
               
               Cow position:chr4:40217995-40217737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr4:40697310-40697568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr4:41472673-41472931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr4:41962053-41961795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 191

               
               
               Conread position:2-256
               
               
               Cow position:chr4:42330575-42330822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:186
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):124, 35

               
               
               Conread position:2-256
               
               
               Cow position:chr4:43316492-43316750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 187

               
               
               Conread position:2-256
               
               
               Cow position:chr4:43884250-43883992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 184

               
               
               Conread position:2-256
               
               
               Cow position:chr4:44778035-44778294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr4:44901411-44901157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):33, 65

               
               
               Conread position:2-256
               
               
               Cow position:chr4:47263934-47263676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr4:47949182-47949440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr4:48375958-48375700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr4:48732833-48732575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr4:50019337-50019594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):125, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr4:54695875-54696132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 60

               
               
               Conread position:2-256
               
               
               Cow position:chr4:57987900-57987643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 66

               
               
               Conread position:2-256
               
               
               Cow position:chr4:60224718-60224973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 114

               
               
               Conread position:2-256
               
               
               Cow position:chr4:60579973-60580231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr4:60855917-60855659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 187

               
               
               Conread position:2-256
               
               
               Cow position:chr4:61242436-61242182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 173

               
               
               Conread position:2-256
               
               
               Cow position:chr4:62906865-62907122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr4:65198644-65198902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr4:67394384-67394126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr4:67767576-67767318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 191

               
               
               Conread position:2-257
               
               
               Cow position:chr4:27337372-27337110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-257
               
               
               Cow position:chr4:54810690-54810949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-257
               
               
               Cow position:chr4:62453831-62454089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 175

               
               
               Conread position:2-265
               
               
               Cow position:chr4:10122563-10122297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-265
               
               
               Cow position:chr4:29034762-29034505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:200
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):35, 61

               
               
               Conread position:2-265
               
               
               Cow position:chr4:29530300-29530566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-265
               
               
               Cow position:chr4:47752479-47752222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):88, 32

               
               
               Conread position:2-265
               
               
               Cow position:chr4:48030015-48029749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 257

               
               
               Conread position:2-265
               
               
               Cow position:chr4:54973207-54972941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:206
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):38, 80

               
               
               Conread position:2-265
               
               
               Cow position:chr4:58291896-58291632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 47

               
               
               Conread position:2-270
               
               
               Cow position:chr4:24140032-24139755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:2-270
               
               
               Cow position:chr4:35144388-35144662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 268

               
               
               Conread position:2-270
               
               
               Cow position:chr4:62962203-62962474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-271
               
               
               Cow position:chr4:6000277-6000548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:198
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):35, 263

               
               
               Conread position:2-272
               
               
               Cow position:chr4:17877114-17876838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-272
               
               
               Cow position:chr4:33069683-33069967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:212
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):35, 60

               
               
               Conread position:2-272
               
               
               Cow position:chr4:67383434-67383161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 119

               
               
               Conread position:2-274
               
               
               Cow position:chr4:39645908-39645636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):35, 20

               
               
               Conread position:2-275
               
               
               Cow position:chr4:606762-606482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-275
               
               
               Cow position:chr4:26874751-26875027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 257

               
               
               Conread position:2-289
               
               
               Cow position:chr4:49744828-49744537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:188
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-298
               
               
               Cow position:chr4:5441504-5441802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:3-155
               
               
               Cow position:chr4:59452362-59452515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:3-178
               
               
               Cow position:chr4:22237261-22237428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):34, 110

               
               
               Conread position:3-183
               
               
               Cow position:chr4:55520509-55520327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:147
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:3-238
               
               
               Cow position:chr4:55509699-55509940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 188

               
               
               Conread position:3-248
               
               
               Cow position:chr4:66174165-66174416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):34, 140

               
               
               Conread position:3-251
               
               
               Cow position:chr4:10822717-10822965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):34, 18

               
               
               Conread position:3-254
               
               
               Cow position:chr4:4673423-4673677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 60

               
               
               Conread position:3-256
               
               
               Cow position:chr4:4185332-4185077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):19, 72

               
               
               Conread position:3-256
               
               
               Cow position:chr4:6167817-6168072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:3-256
               
               
               Cow position:chr4:7214620-7214878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:188
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):40, 146

               
               
               Conread position:3-256
               
               
               Cow position:chr4:11107928-11108175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:191
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):34, 128

               
               
               Conread position:3-256
               
               
               Cow position:chr4:12605724-12605972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:190
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):206, 76

               
               
               Conread position:3-256
               
               
               Cow position:chr4:15463276-15463527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:193
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 37

               
               
               Conread position:3-256
               
               
               Cow position:chr4:15873483-15873735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:194
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):33, 48

               
               
               Conread position:3-256
               
               
               Cow position:chr4:17473236-17472986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:190
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):33, 18

               
               
               Conread position:3-256
               
               
               Cow position:chr4:18844954-18844707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 88

               
               
               Conread position:3-256
               
               
               Cow position:chr4:19237223-19236968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:3-256
               
               
               Cow position:chr4:23525735-23525480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 112

               
               
               Conread position:3-256
               
               
               Cow position:chr4:23552848-23552608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:183
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):137, 34

               
               
               Conread position:3-256
               
               
               Cow position:chr4:25878575-25878322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):34, 55

               
               
               Conread position:3-256
               
               
               Cow position:chr4:26468383-26468131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):30, 73

               
               
               Conread position:3-256
               
               
               Cow position:chr4:27539818-27539565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):34, 63

               
               
               Conread position:3-256
               
               
               Cow position:chr4:35929639-35929381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:192
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):34, 185

               
               
               Conread position:3-256
               
               
               Cow position:chr4:36754940-36754684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:192
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 29

               
               
               Conread position:3-256
               
               
               Cow position:chr4:45654018-45654273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):98, 31

               
               
               Conread position:3-256
               
               
               Cow position:chr4:46530097-46530346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:198
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):34, 59

               
               
               Conread position:3-256
               
               
               Cow position:chr4:61449669-61449412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 190

               
               
               Conread position:3-256
               
               
               Cow position:chr4:65816504-65816758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:190
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):34, 9

               
               
               Conread position:3-265
               
               
               Cow position:chr4:1028067-1028340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):19, 214

               
               
               Conread position:3-265
               
               
               Cow position:chr4:54147272-54147522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):24, 90

               
               
               Conread position:3-274
               
               
               Cow position:chr4:12751520-12751241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:3-275
               
               
               Cow position:chr4:33181130-33181409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):34, 258

               
               
               Conread position:3-282
               
               
               Cow position:chr4:16832394-16832681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:204
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):34, 163

               
               
               Conread position:3-294
               
               
               Cow position:chr4:44733775-44733481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:216
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):34, 114

               
               
               Conread position:4-256
               
               
               Cow position:chr4:3070064-3069816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):33, 170

               
               
               Conread position:4-256
               
               
               Cow position:chr4:3170435-3170181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 136

               
               
               Conread position:4-256
               
               
               Cow position:chr4:23150504-23150758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:198
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):91, 30

               
               
               Conread position:4-256
               
               
               Cow position:chr4:31484827-31485083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 187

               
               
               Conread position:4-256
               
               
               Cow position:chr4:41130992-41131248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 186

               
               
               Conread position:5-256
               
               
               Cow position:chr4:1499937-1500190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 193

               
               
               Conread position:8-188
               
               
               Cow position:chr4:43840830-43841010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:129
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):31, 70

               
               
               Conread position:8-253
               
               
               Cow position:chr4:32949-33190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):29, 43

               
               
               Conread position:8-256
               
               
               Cow position:chr4:8559855-8560100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:188
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):29, 142

               
               
               Conread position:8-256
               
               
               Cow position:chr4:20091251-20091010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:192
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):28, 83

               
               
               Conread position:8-256
               
               
               Cow position:chr4:37786452-37786201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 181

               
               
               Conread position:8-256
               
               
               Cow position:chr4:68795855-68795611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):29, 144

               
               
               Conread position:9-187
               
               
               Cow position:chr4:5578672-5578852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:151
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:9-187
               
               
               Cow position:chr4:11026073-11026245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):117, 28

               
               
               Conread position:9-252
               
               
               Cow position:chr4:11100447-11100692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):28, 66

               
               
               Conread position:9-253
               
               
               Cow position:chr4:13328829-13328585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:178
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):26, 54

               
               
               Conread position:9-253
               
               
               Cow position:chr4:27293946-27294186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):117, 28

               
               
               Conread position:9-253
               
               
               Cow position:chr4:54189913-54189672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:178
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):118, 63

               
               
               Conread position:9-256
               
               
               Cow position:chr4:3849748-3849498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:186
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):28, 69

               
               
               Conread position:9-256
               
               
               Cow position:chr4:65431420-65431180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:192
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):204, 31

               
               
               Conread position:9-257
               
               
               Cow position:chr4:44593252-44593493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 160

               
               
               Conread position:9-265
               
               
               Cow position:chr4:23451870-23452121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 54

               
               
               Conread position:9-270
               
               
               Cow position:chr4:17751784-17752052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 182

               
               
               Conread position:10-191
               
               
               Cow position:chr4:6445910-6445727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:10-252
               
               
               Cow position:chr4:8769187-8768946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:190
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):25, 31

               
               
               Conread position:10-253
               
               
               Cow position:chr4:41097120-41096881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:191
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):25, 45

               
               
               Conread position:10-256
               
               
               Cow position:chr4:41037975-41037727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):27, 81

               
               
               Conread position:10-286
               
               
               Cow position:chr4:14539160-14539428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:200
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):25, 96

               
               
               Conread position:11-256
               
               
               Cow position:chr4:59783824-59783575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:192
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:13-253
               
               
               Cow position:chr4:60651739-60651495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 129

               
               
               Conread position:14-253
               
               
               Cow position:chr4:10044622-10044865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:187
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:14-256
               
               
               Cow position:chr4:31562086-31562332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:191
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):23, 175

               
               
               Conread position:14-256
               
               
               Cow position:chr4:38584025-38583780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 139

               
               
               Conread position:14-256
               
               
               Cow position:chr4:46711459-46711707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 181

               
               
               Conread position:15-250
               
               
               Cow position:chr4:34166892-34167128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:185
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):22, 51

               
               
               Conread position:15-253
               
               
               Cow position:chr4:1368922-1369157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:180
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):22, 36

               
               
               Conread position:15-253
               
               
               Cow position:chr4:65581663-65581417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 176

               
               
               Conread position:15-256
               
               
               Cow position:chr4:8559172-8559408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):175, 41

               
               
               Conread position:15-256
               
               
               Cow position:chr4:26745659-26745417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):21, 35

               
               
               Conread position:15-256
               
               
               Cow position:chr4:27292745-27292991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:185
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):23, 90

               
               
               Conread position:15-256
               
               
               Cow position:chr4:52086300-52086055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:185
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):22, 143

               
               
               Conread position:15-256
               
               
               Cow position:chr4:65890925-65890692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:185
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):22, 47

               
               
               Conread position:16-256
               
               
               Cow position:chr4:19264811-19264579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:189
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):21, 42

               
               
               Conread position:17-256
               
               
               Cow position:chr4:2263561-2263810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:192
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:17-256
               
               
               Cow position:chr4:26911923-26911680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:17-256
               
               
               Cow position:chr4:28739708-28739466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:173
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):20, 35

               
               
               Conread position:17-257
               
               
               Cow position:chr4:12841086-12840840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):20, 11

               
               
               Conread position:17-265
               
               
               Cow position:chr4:48496819-48496568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):20, 135

               
               
               Conread position:18-256
               
               
               Cow position:chr4:3284217-3284459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:181
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):19, 191

               
               
               Conread position:18-256
               
               
               Cow position:chr4:17775622-17775869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:172
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):19, 99

               
               
               Conread position:18-256
               
               
               Cow position:chr4:22850534-22850772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:186
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):19, 172

               
               
               Conread position:19-256
               
               
               Cow position:chr4:34175842-34176085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:186
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:19-256
               
               
               Cow position:chr4:41957901-41957660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:192
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 174

               
               
               Conread position:19-256
               
               
               Cow position:chr4:54931472-54931707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:176
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):17, 102

               
               
               Conread position:19-256
               
               
               Cow position:chr4:68880657-68880412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):18, 151

               
               
               Conread position:27-244
               
               
               Cow position:chr4:27996905-27996687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):12, 30

               
               
               Conread position:27-253
               
               
               Cow position:chr4:1047132-1047362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:179
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:27-256
               
               
               Cow position:chr4:27882024-27881791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:183
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):10, 164

               
               
               Conread position:40-256
               
               
               Cow position:chr4:30171249-30171467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):97, 64

               
               
               Conread position:43-253
               
               
               Cow position:chr4:14142424-14142209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):13, 148

               
               
               Conread position:44-189
               
               
               Cow position:chr4:50977637-50977495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):83, 21

               
               
               Conread position:44-256
               
               
               Cow position:chr4:61625453-61625664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:162
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):83, 17

               
               
               Conread position:47-271
               
               
               Cow position:chr4:18096501-18096725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:173
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):79, 145

               
               
               Conread position:49-256
               
               
               Cow position:chr4:27518263-27518473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):78, 141

               
               
               Conread position:59-256
               
               
               Cow position:chr4:32215252-32215053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:160
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):68, 52

               
               
               Conread position:62-252
               
               
               Cow position:chr4:17919864-17920051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):58, 28

               
               
               Conread position:68-248
               
               
               Cow position:chr4:120806-120622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):59, 123

               
               
               Conread position:71-256
               
               
               Cow position:chr4:6548122-6547934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):56, 119

               
               
               Conread position:75-256
               
               
               Cow position:chr4:25353923-25354103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):54, 119

               
               
               Conread position:83-256
               
               
               Cow position:chr4:27892148-27891972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):44, 107

               
               
               Conread position:96-253
               
               
               Cow position:chr4:19107990-19108151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:125
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:97-265
               
               
               Cow position:chr4:41190108-41190272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):29, 107

               
               
               Conread position:102-265
               
               
               Cow position:chr4:18267148-18266983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:129
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):25, 88

               
               
               Conread position:104-266
               
               
               Cow position:chr4:67680923-67681087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):22, 81

               
               
               Conread position:1-182
               
               
               Cow position:chr5:59892-60072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:145
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):36, 13

               
               
               Conread position:1-256
               
               
               Cow position:chr5:5715832-5716076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 64

               
               
               Conread position:1-256
               
               
               Cow position:chr5:24159193-24158934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 190

               
               
               Conread position:1-256
               
               
               Cow position:chr5:29255956-29256213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:1-257
               
               
               Cow position:chr5:58770614-58770872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 152

               
               
               Conread position:2-183
               
               
               Cow position:chr5:279923-280105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:146
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-183
               
               
               Cow position:chr5:7498728-7498911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-187
               
               
               Cow position:chr5:7175555-7175368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:153
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:2-187
               
               
               Cow position:chr5:35180386-35180199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:156
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:2-207
               
               
               Cow position:chr5:28013114-28012911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:161
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-239
               
               
               Cow position:chr5:39363129-39362888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-239
               
               
               Cow position:chr5:44709115-44709354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:192
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-249
               
               
               Cow position:chr5:44275852-44275607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:188
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 179

               
               
               Conread position:2-250
               
               
               Cow position:chr5:443052-443304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-250
               
               
               Cow position:chr5:12921654-12921403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):35, 60

               
               
               Conread position:2-250
               
               
               Cow position:chr5:54785851-54786103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-252
               
               
               Cow position:chr5:445736-445482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-252
               
               
               Cow position:chr5:23353997-23353744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 173

               
               
               Conread position:2-252
               
               
               Cow position:chr5:27549257-27549489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):47, 78

               
               
               Conread position:2-252
               
               
               Cow position:chr5:41411182-41411435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 58

               
               
               Conread position:2-252
               
               
               Cow position:chr5:51746475-51746227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:197
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):34, 125

               
               
               Conread position:2-253
               
               
               Cow position:chr5:2917718-2917464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 48

               
               
               Conread position:2-253
               
               
               Cow position:chr5:3970779-3970527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 13

               
               
               Conread position:2-253
               
               
               Cow position:chr5:4683244-4683498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 60

               
               
               Conread position:2-253
               
               
               Cow position:chr5:4753876-4754131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 188

               
               
               Conread position:2-253
               
               
               Cow position:chr5:6151575-6151830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-253
               
               
               Cow position:chr5:9002853-9003109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-253
               
               
               Cow position:chr5:24101907-24101652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:2-253
               
               
               Cow position:chr5:24221252-24220999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:175
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):35, 193

               
               
               Conread position:2-253
               
               
               Cow position:chr5:25927172-25927436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:197
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):34, 11

               
               
               Conread position:2-253
               
               
               Cow position:chr5:42283420-42283172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:193
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):125, 35

               
               
               Conread position:2-253
               
               
               Cow position:chr5:71456790-71457044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:192
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 24

               
               
               Conread position:2-256
               
               
               Cow position:chr5:1059310-1059568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr5:1338664-1338922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr5:1395205-1395459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:189
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):35, 191

               
               
               Conread position:2-256
               
               
               Cow position:chr5:3500871-3501129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:192
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr5:3544553-3544307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:194
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):35, 65

               
               
               Conread position:2-256
               
               
               Cow position:chr5:3789480-3789227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:198
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):35, 90

               
               
               Conread position:2-256
               
               
               Cow position:chr5:4015615-4015873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr5:4388438-4388178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:192
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):35, 22

               
               
               Conread position:2-256
               
               
               Cow position:chr5:4434247-4434505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:196
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr5:4963129-4963381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 190

               
               
               Conread position:2-256
               
               
               Cow position:chr5:5106480-5106223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:199
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):35, 71

               
               
               Conread position:2-256
               
               
               Cow position:chr5:5924720-5924970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 191

               
               
               Conread position:2-256
               
               
               Cow position:chr5:6124905-6125163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr5:6455406-6455664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 187

               
               
               Conread position:2-256
               
               
               Cow position:chr5:6585197-6585454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 187

               
               
               Conread position:2-256
               
               
               Cow position:chr5:6694791-6694533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr5:6772822-6772567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:193
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):125, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr5:10066293-10066551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr5:10840207-10840470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:203
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):38, 193

               
               
               Conread position:2-256
               
               
               Cow position:chr5:10853577-10853833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 187

               
               
               Conread position:2-256
               
               
               Cow position:chr5:10922102-10921844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 184

               
               
               Conread position:2-256
               
               
               Cow position:chr5:11631728-11631986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr5:12133850-12133593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 184

               
               
               Conread position:2-256
               
               
               Cow position:chr5:12212790-12212532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr5:12337531-12337273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr5:13807501-13807752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:185
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):125, 95

               
               
               Conread position:2-256
               
               
               Cow position:chr5:14543044-14543302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr5:14636322-14636579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 114

               
               
               Conread position:2-256
               
               
               Cow position:chr5:15677317-15677060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 110

               
               
               Conread position:2-256
               
               
               Cow position:chr5:15761113-15761371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr5:17387160-17387418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 191

               
               
               Conread position:2-256
               
               
               Cow position:chr5:18118718-18118976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr5:18250304-18250052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):204, 22

               
               
               Conread position:2-256
               
               
               Cow position:chr5:18404801-18405055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 66

               
               
               Conread position:2-256
               
               
               Cow position:chr5:18667564-18667306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr5:21189475-21189220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:199
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):35, 56

               
               
               Conread position:2-256
               
               
               Cow position:chr5:24299270-24299012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr5:24577693-24577435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr5:26052988-26052730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr5:27907211-27907463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):35, 91

               
               
               Conread position:2-256
               
               
               Cow position:chr5:29634686-29634428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr5:30582583-30582325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:190
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr5:32755194-32755445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:197
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):35, 88

               
               
               Conread position:2-256
               
               
               Cow position:chr5:34683105-34683361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:199
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):35, 64

               
               
               Conread position:2-256
               
               
               Cow position:chr5:34709026-34708768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr5:36369735-36369993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:197
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr5:36906805-36907063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr5:37380343-37380086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 169

               
               
               Conread position:2-256
               
               
               Cow position:chr5:41067267-41067024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:191
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):35, 61

               
               
               Conread position:2-256
               
               
               Cow position:chr5:41488927-41488669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr5:41586531-41586273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr5:42676500-42676260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 119

               
               
               Conread position:2-256
               
               
               Cow position:chr5:44617402-44617144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr5:45179590-45179847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 187

               
               
               Conread position:2-256
               
               
               Cow position:chr5:46626021-46626277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 7

               
               
               Conread position:2-256
               
               
               Cow position:chr5:46650354-46650091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:199
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):33, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr5:46667331-46667073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr5:46676870-46676612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr5:46735020-46735277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:192
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):33, 160

               
               
               Conread position:2-256
               
               
               Cow position:chr5:47343130-47342873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 184

               
               
               Conread position:2-256
               
               
               Cow position:chr5:47471653-47471392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 198

               
               
               Conread position:2-256
               
               
               Cow position:chr5:47560303-47560562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 186

               
               
               Conread position:2-256
               
               
               Cow position:chr5:48026525-48026268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr5:49117094-49117352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 184

               
               
               Conread position:2-256
               
               
               Cow position:chr5:49221242-49221494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:190
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):35, 96

               
               
               Conread position:2-256
               
               
               Cow position:chr5:51166053-51166310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 71

               
               
               Conread position:2-256
               
               
               Cow position:chr5:52822951-52823208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 60

               
               
               Conread position:2-256
               
               
               Cow position:chr5:53075613-53075871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr5:54136381-54136639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr5:54927662-54927920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr5:54929990-54930248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr5:54951865-54952123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr5:55631321-55631063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr5:57336107-57336365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr5:59064700-59064443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:191
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):35, 73

               
               
               Conread position:2-256
               
               
               Cow position:chr5:59146634-59146376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr5:64061584-64061327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr5:64778744-64779003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr5:72857132-72856873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:199
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):31, 190

               
               
               Conread position:2-256
               
               
               Cow position:chr5:73485629-73485900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:204
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-257
               
               
               Cow position:chr5:10772573-10772828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 126

               
               
               Conread position:2-257
               
               
               Cow position:chr5:23828940-23829176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:189
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:2-257
               
               
               Cow position:chr5:24632782-24633040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 184

               
               
               Conread position:2-257
               
               
               Cow position:chr5:58245589-58245330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:195
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):42, 89

               
               
               Conread position:2-260
               
               
               Cow position:chr5:16085553-16085814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 194

               
               
               Conread position:2-261
               
               
               Cow position:chr5:18901576-18901330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):114, 0

               
               
               Conread position:2-265
               
               
               Cow position:chr5:21188191-21187925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-265
               
               
               Cow position:chr5:24087793-24088061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 259

               
               
               Conread position:2-265
               
               
               Cow position:chr5:26073531-26073795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:202
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):35, 96

               
               
               Conread position:2-265
               
               
               Cow position:chr5:27195805-27196069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 191

               
               
               Conread position:2-265
               
               
               Cow position:chr5:37735632-37735367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 15

               
               
               Conread position:2-265
               
               
               Cow position:chr5:46779772-46779507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 60

               
               
               Conread position:2-265
               
               
               Cow position:chr5:46816846-46817111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 60

               
               
               Conread position:2-265
               
               
               Cow position:chr5:58199266-58199001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 78

               
               
               Conread position:2-270
               
               
               Cow position:chr5:29742304-29742574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 191

               
               
               Conread position:2-272
               
               
               Cow position:chr5:46707894-46707620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 199

               
               
               Conread position:2-272
               
               
               Cow position:chr5:52829529-52829804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 191

               
               
               Conread position:2-275
               
               
               Cow position:chr5:29223008-29223288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-280
               
               
               Cow position:chr5:55722786-55722502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 268

               
               
               Conread position:3-239
               
               
               Cow position:chr5:24643618-24643854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 60

               
               
               Conread position:3-248
               
               
               Cow position:chr5:62159671-62159917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:178
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):124, 33

               
               
               Conread position:3-248
               
               
               Cow position:chr5:72046408-72046656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:179
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):34, 67

               
               
               Conread position:3-249
               
               
               Cow position:chr5:6576336-6576587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:180
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):34, 20

               
               
               Conread position:3-250
               
               
               Cow position:chr5:64845012-64845260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 55

               
               
               Conread position:3-250
               
               
               Cow position:chr5:68593676-68593436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):206, 33

               
               
               Conread position:3-256
               
               
               Cow position:chr5:295521-295264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:196
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):34, 188

               
               
               Conread position:3-256
               
               
               Cow position:chr5:709895-710152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:191
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):34, 189

               
               
               Conread position:3-256
               
               
               Cow position:chr5:6032230-6031988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:190
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):34, 87

               
               
               Conread position:3-256
               
               
               Cow position:chr5:7140844-7141101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 45

               
               
               Conread position:3-256
               
               
               Cow position:chr5:8996755-8997007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:190
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):124, 34

               
               
               Conread position:3-256
               
               
               Cow position:chr5:14551345-14551602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 187

               
               
               Conread position:3-256
               
               
               Cow position:chr5:19978658-19978915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:3-256
               
               
               Cow position:chr5:27178891-27178648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:196
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):34, 144

               
               
               Conread position:3-256
               
               
               Cow position:chr5:29763167-29762924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:186
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):34, 142

               
               
               Conread position:3-256
               
               
               Cow position:chr5:42744046-42743792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:185
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):34, 54

               
               
               Conread position:3-256
               
               
               Cow position:chr5:43991538-43991281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:189
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:3-256
               
               
               Cow position:chr5:45705267-45705020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 155

               
               
               Conread position:3-256
               
               
               Cow position:chr5:46671859-46671609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:195
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):34, 54

               
               
               Conread position:3-256
               
               
               Cow position:chr5:47871852-47872107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:3-256
               
               
               Cow position:chr5:58461437-58461698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:201
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):32, 92

               
               
               Conread position:3-256
               
               
               Cow position:chr5:59082946-59083210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):34, 23

               
               
               Conread position:3-256
               
               
               Cow position:chr5:75755828-75755584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:198
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):34, 24

               
               
               Conread position:3-257
               
               
               Cow position:chr5:1383233-1382979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:200
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):34, 75

               
               
               Conread position:3-257
               
               
               Cow position:chr5:41523739-41524001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:202
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):34, 60

               
               
               Conread position:3-259
               
               
               Cow position:chr5:35207498-35207238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 190

               
               
               Conread position:3-265
               
               
               Cow position:chr5:56442513-56442250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:203
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):34, 23

               
               
               Conread position:3-266
               
               
               Cow position:chr5:31634692-31634424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):33, 69

               
               
               Conread position:3-270
               
               
               Cow position:chr5:47855083-47854818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 163

               
               
               Conread position:3-272
               
               
               Cow position:chr5:17645826-17646105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:3-302
               
               
               Cow position:chr5:49521955-49521656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 171

               
               
               Conread position:4-181
               
               
               Cow position:chr5:50923589-50923768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:149
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:4-249
               
               
               Cow position:chr5:58192170-58191924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):86, 36

               
               
               Conread position:4-250
               
               
               Cow position:chr5:51684362-51684616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):33, 57

               
               
               Conread position:4-256
               
               
               Cow position:chr5:20107775-20108028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 20

               
               
               Conread position:4-256
               
               
               Cow position:chr5:31709555-31709299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 187

               
               
               Conread position:4-265
               
               
               Cow position:chr5:8178389-8178130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 182

               
               
               Conread position:6-256
               
               
               Cow position:chr5:5937559-5937306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:189
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):31, 242

               
               
               Conread position:8-253
               
               
               Cow position:chr5:28223690-28223442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:184
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):29, 93

               
               
               Conread position:8-256
               
               
               Cow position:chr5:2977036-2976785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 67

               
               
               Conread position:8-256
               
               
               Cow position:chr5:18703180-18703426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:197
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):28, 56

               
               
               Conread position:8-270
               
               
               Cow position:chr5:67654575-67654312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:191
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):20, 62

               
               
               Conread position:8-294
               
               
               Cow position:chr5:40792083-40791795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:203
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):201, 15

               
               
               Conread position:8-302
               
               
               Cow position:chr5:62436375-62436069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:9-190
               
               
               Cow position:chr5:39173993-39174176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:9-252
               
               
               Cow position:chr5:30302096-30301859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):28, 53

               
               
               Conread position:9-253
               
               
               Cow position:chr5:9091176-9091420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:194
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):118, 25

               
               
               Conread position:9-253
               
               
               Cow position:chr5:17027315-17027079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):185, 23

               
               
               Conread position:9-256
               
               
               Cow position:chr5:4630010-4629767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:186
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):28, 94

               
               
               Conread position:9-256
               
               
               Cow position:chr5:46685377-46685616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:189
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):162, 28

               
               
               Conread position:9-256
               
               
               Cow position:chr5:54088963-54088729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):131, 48

               
               
               Conread position:9-274
               
               
               Cow position:chr5:41391981-41391713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:197
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):31, 145

               
               
               Conread position:10-256
               
               
               Cow position:chr5:10299716-10299467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:155
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):117, 180

               
               
               Conread position:10-256
               
               
               Cow position:chr5:26096520-26096284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):116, 140

               
               
               Conread position:14-256
               
               
               Cow position:chr5:18126860-18126624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:170
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):22, 32

               
               
               Conread position:14-256
               
               
               Cow position:chr5:18558164-18558405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:192
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):24, 61

               
               
               Conread position:14-256
               
               
               Cow position:chr5:76098785-76099031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 172

               
               
               Conread position:14-265
               
               
               Cow position:chr5:7396488-7396239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:201
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):23, 86

               
               
               Conread position:15-183
               
               
               Cow position:chr5:2704307-2704478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:136
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):22, 77

               
               
               Conread position:15-237
               
               
               Cow position:chr5:21524297-21524071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:172
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:15-248
               
               
               Cow position:chr5:41548307-41548531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):22, 11

               
               
               Conread position:15-256
               
               
               Cow position:chr5:5682265-5682512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:184
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:15-256
               
               
               Cow position:chr5:31560496-31560243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:177
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:15-256
               
               
               Cow position:chr5:41228805-41229048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:189
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 55

               
               
               Conread position:15-256
               
               
               Cow position:chr5:51502128-51501883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:194
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):22, 63

               
               
               Conread position:15-257
               
               
               Cow position:chr5:29769304-29769057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 178

               
               
               Conread position:15-265
               
               
               Cow position:chr5:31921303-31921053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):21, 101

               
               
               Conread position:15-269
               
               
               Cow position:chr5:21828066-21827803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:195
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):23, 87

               
               
               Conread position:15-274
               
               
               Cow position:chr5:14781987-14782245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):23, 129

               
               
               Conread position:17-297
               
               
               Cow position:chr5:41356601-41356871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:197
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):20, 121

               
               
               Conread position:18-256
               
               
               Cow position:chr5:23648189-23648430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:166
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):109, 17

               
               
               Conread position:18-256
               
               
               Cow position:chr5:32810784-32811027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:193
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 173

               
               
               Conread position:20-256
               
               
               Cow position:chr5:38848346-38848586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:186
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):17, 171

               
               
               Conread position:22-250
               
               
               Cow position:chr5:70402116-70401887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:160
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):13, 61

               
               
               Conread position:27-256
               
               
               Cow position:chr5:48535078-48534856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:34-256
               
               
               Cow position:chr5:2203167-2203392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):93, 156

               
               
               Conread position:36-256
               
               
               Cow position:chr5:37626081-37625858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:168
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):91, 154

               
               
               Conread position:37-252
               
               
               Cow position:chr5:46587785-46588001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:164
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):90, 103

               
               
               Conread position:43-256
               
               
               Cow position:chr5:59071828-59072045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):84, 150

               
               
               Conread position:44-256
               
               
               Cow position:chr5:45999962-46000173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:169
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):85, 67

               
               
               Conread position:45-256
               
               
               Cow position:chr5:47696991-47697207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:173
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):10, 149

               
               
               Conread position:49-250
               
               
               Cow position:chr5:70531259-70531459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):78, 12

               
               
               Conread position:51-265
               
               
               Cow position:chr5:25901267-25901483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:157
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):75, 95

               
               
               Conread position:65-256
               
               
               Cow position:chr5:13630301-13630495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):62, 125

               
               
               Conread position:69-256
               
               
               Cow position:chr5:65597614-65597430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):94, 51

               
               
               Conread position:70-256
               
               
               Cow position:chr5:41547818-41548008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):54, 118

               
               
               Conread position:73-256
               
               
               Cow position:chr5:2695617-2695803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):54, 116

               
               
               Conread position:73-276
               
               
               Cow position:chr5:12728975-12729178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:160
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):54, 117

               
               
               Conread position:74-244
               
               
               Cow position:chr5:72345914-72346086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:130
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):53, 91

               
               
               Conread position:81-256
               
               
               Cow position:chr5:30157537-30157359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):46, 109

               
               
               Conread position:83-256
               
               
               Cow position:chr5:11358301-11358125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:136
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):44, 107

               
               
               Conread position:84-256
               
               
               Cow position:chr5:31120033-31120207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):42, 31

               
               
               Conread position:92-256
               
               
               Cow position:chr5:31098082-31098247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):34, 5

               
               
               Conread position:92-256
               
               
               Cow position:chr5:66910270-66910103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):35, 97

               
               
               Conread position:93-256
               
               
               Cow position:chr5:38662497-38662331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:124
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:95-256
               
               
               Cow position:chr5:742584-742744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:126
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):31, 97

               
               
               Conread position:98-256
               
               
               Cow position:chr5:14942656-14942817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):29, 92

               
               
               Conread position:104-256
               
               
               Cow position:chr5:54868177-54868028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):87, 22

               
               
               Conread position:1-238
               
               
               Cow position:chr6:57383810-57383572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:189
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):10, 6

               
               
               Conread position:1-243
               
               
               Cow position:chr6:2111004-2111248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 8

               
               
               Conread position:1-253
               
               
               Cow position:chr6:46633515-46633260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 107

               
               
               Conread position:1-256
               
               
               Cow position:chr6:843430-843690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:1-256
               
               
               Cow position:chr6:4274466-4274208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:190
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:1-265
               
               
               Cow position:chr6:53543086-53543353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 190

               
               
               Conread position:2-177
               
               
               Cow position:chr6:52696980-52696803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:145
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:2-187
               
               
               Cow position:chr6:17773382-17773195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:149
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-187
               
               
               Cow position:chr6:54887197-54887383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:150
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):35, 80

               
               
               Conread position:2-210
               
               
               Cow position:chr6:11389218-11389424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-210
               
               
               Cow position:chr6:20581380-20581586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:163
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-210
               
               
               Cow position:chr6:28136147-28135942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):35, 93

               
               
               Conread position:2-231
               
               
               Cow position:chr6:7448891-7448658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:182
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-235
               
               
               Cow position:chr6:55361399-55361636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:187
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-238
               
               
               Cow position:chr6:7216191-7215951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:188
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-239
               
               
               Cow position:chr6:46225569-46225807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:189
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):35, 22

               
               
               Conread position:2-241
               
               
               Cow position:chr6:12971792-12971551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:152
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-246
               
               
               Cow position:chr6:27887307-27887062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):35, 60

               
               
               Conread position:2-248
               
               
               Cow position:chr6:43187505-43187255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-252
               
               
               Cow position:chr6:5946379-5946633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-252
               
               
               Cow position:chr6:8205583-8205330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 175

               
               
               Conread position:2-252
               
               
               Cow position:chr6:24242683-24242431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 184

               
               
               Conread position:2-252
               
               
               Cow position:chr6:50571587-50571333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 184

               
               
               Conread position:2-253
               
               
               Cow position:chr6:8754059-8754313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 190

               
               
               Conread position:2-253
               
               
               Cow position:chr6:12388066-12388313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:193
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):34, 140

               
               
               Conread position:2-253
               
               
               Cow position:chr6:35601073-35600820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:178
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):35, 7

               
               
               Conread position:2-253
               
               
               Cow position:chr6:40863636-40863888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:190
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):35, 170

               
               
               Conread position:2-256
               
               
               Cow position:chr6:126739-126994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 119

               
               
               Conread position:2-256
               
               
               Cow position:chr6:451867-452125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 192

               
               
               Conread position:2-256
               
               
               Cow position:chr6:478946-478688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 184

               
               
               Conread position:2-256
               
               
               Cow position:chr6:508125-508384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 190

               
               
               Conread position:2-256
               
               
               Cow position:chr6:706394-706136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:192
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr6:888953-888695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr6:917454-917181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:201
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):35, 71

               
               
               Conread position:2-256
               
               
               Cow position:chr6:1537101-1536843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr6:1797021-1796765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr6:1834391-1834133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:193
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr6:2186386-2186644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:193
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr6:2618170-2618428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr6:2875638-2875893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 192

               
               
               Conread position:2-256
               
               
               Cow position:chr6:3272086-3272343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr6:3485023-3485281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr6:6034402-6034659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 187

               
               
               Conread position:2-256
               
               
               Cow position:chr6:6557357-6557099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr6:7467255-7467512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 101

               
               
               Conread position:2-256
               
               
               Cow position:chr6:10598397-10598141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 119

               
               
               Conread position:2-256
               
               
               Cow position:chr6:11020054-11019795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 191

               
               
               Conread position:2-256
               
               
               Cow position:chr6:11289071-11289328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 175

               
               
               Conread position:2-256
               
               
               Cow position:chr6:11401716-11401458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 207

               
               
               Conread position:2-256
               
               
               Cow position:chr6:11453471-11453730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 190

               
               
               Conread position:2-256
               
               
               Cow position:chr6:11869540-11869796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):125, 55

               
               
               Conread position:2-256
               
               
               Cow position:chr6:12997815-12997559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:197
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):35, 113

               
               
               Conread position:2-256
               
               
               Cow position:chr6:14928847-14928597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):34, 87

               
               
               Conread position:2-256
               
               
               Cow position:chr6:15275844-15276102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 184

               
               
               Conread position:2-256
               
               
               Cow position:chr6:16049897-16050154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr6:16418286-16418544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr6:16593344-16593098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:195
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):45, 67

               
               
               Conread position:2-256
               
               
               Cow position:chr6:16766446-16766702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 145

               
               
               Conread position:2-256
               
               
               Cow position:chr6:17111770-17112027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 88

               
               
               Conread position:2-256
               
               
               Cow position:chr6:17121785-17121524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:192
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):35, 83

               
               
               Conread position:2-256
               
               
               Cow position:chr6:17386919-17386661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr6:18803663-18803921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr6:19103512-19103770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr6:19712849-19713096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:200
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):35, 141

               
               
               Conread position:2-256
               
               
               Cow position:chr6:20451355-20451098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 73

               
               
               Conread position:2-256
               
               
               Cow position:chr6:20552847-20553103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:194
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):35, 95

               
               
               Conread position:2-256
               
               
               Cow position:chr6:21163699-21163441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr6:21712102-21711844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr6:21832264-21832522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:193
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr6:21856979-21857227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:191
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):35, 22

               
               
               Conread position:2-256
               
               
               Cow position:chr6:22043613-22043870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 186

               
               
               Conread position:2-256
               
               
               Cow position:chr6:22737310-22737568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 216

               
               
               Conread position:2-256
               
               
               Cow position:chr6:23568197-23568455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr6:23879662-23879918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 11

               
               
               Conread position:2-256
               
               
               Cow position:chr6:25374712-25374970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr6:25790321-25790561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:191
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):35, 56

               
               
               Conread position:2-256
               
               
               Cow position:chr6:26324804-26325061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:191
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr6:26771726-26771983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 190

               
               
               Conread position:2-256
               
               
               Cow position:chr6:27094191-27094448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:197
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):35, 154

               
               
               Conread position:2-256
               
               
               Cow position:chr6:27475800-27475549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 19

               
               
               Conread position:2-256
               
               
               Cow position:chr6:27939429-27939172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):125, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr6:28001000-28001253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr6:28065386-28065129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:193
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr6:28172299-28172049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):135, 21

               
               
               Conread position:2-256
               
               
               Cow position:chr6:31912779-31913037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr6:32420343-32420088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 42

               
               
               Conread position:2-256
               
               
               Cow position:chr6:33301064-33300803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr6:33466353-33466096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:194
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):35, 106

               
               
               Conread position:2-256
               
               
               Cow position:chr6:33809038-33809296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr6:34494071-34493813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 187

               
               
               Conread position:2-256
               
               
               Cow position:chr6:34504125-34504383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 187

               
               
               Conread position:2-256
               
               
               Cow position:chr6:34843317-34843575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr6:35873336-35873591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 56

               
               
               Conread position:2-256
               
               
               Cow position:chr6:36230130-36230388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr6:36531670-36531411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 187

               
               
               Conread position:2-256
               
               
               Cow position:chr6:37387962-37387716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:196
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):35, 170

               
               
               Conread position:2-256
               
               
               Cow position:chr6:39331137-39331393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr6:39912718-39912462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 191

               
               
               Conread position:2-256
               
               
               Cow position:chr6:39999063-39999319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 184

               
               
               Conread position:2-256
               
               
               Cow position:chr6:40251403-40251659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr6:40278448-40278197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):125, 95

               
               
               Conread position:2-256
               
               
               Cow position:chr6:40550304-40550562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 187

               
               
               Conread position:2-256
               
               
               Cow position:chr6:40813757-40813503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:197
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):35, 96

               
               
               Conread position:2-256
               
               
               Cow position:chr6:41231883-41231626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:189
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):35, 73

               
               
               Conread position:2-256
               
               
               Cow position:chr6:42267121-42266876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):124, 26

               
               
               Conread position:2-256
               
               
               Cow position:chr6:43087208-43087458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:189
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):35, 96

               
               
               Conread position:2-256
               
               
               Cow position:chr6:43621127-43620869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr6:43779088-43778844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:200
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):35, 45

               
               
               Conread position:2-256
               
               
               Cow position:chr6:44017432-44017690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr6:44146552-44146809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 47

               
               
               Conread position:2-256
               
               
               Cow position:chr6:45479692-45479950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr6:45666534-45666789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 157

               
               
               Conread position:2-256
               
               
               Cow position:chr6:45975895-45975637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr6:47039815-47040071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 60

               
               
               Conread position:2-256
               
               
               Cow position:chr6:51150338-51150080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr6:51717953-51717693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 186

               
               
               Conread position:2-256
               
               
               Cow position:chr6:52065725-52065983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr6:52557255-52557498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):34, 106

               
               
               Conread position:2-256
               
               
               Cow position:chr6:55593466-55593208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr6:55903485-55903227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr6:56451699-56451957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr6:56926129-56925871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr6:57521571-57521313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr6:57857166-57856908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 183

               
               
               Conread position:2-256
               
               
               Cow position:chr6:58605923-58605668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 46

               
               
               Conread position:2-256
               
               
               Cow position:chr6:60332740-60332481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 185

               
               
               Conread position:2-256
               
               
               Cow position:chr6:60379559-60379301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr6:63177439-63177181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr6:65819186-65819442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:190
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr6:65874888-65875143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):35, 191

               
               
               Conread position:2-256
               
               
               Cow position:chr6:67173952-67173693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:200
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):35, 117

               
               
               Conread position:2-256
               
               
               Cow position:chr6:67448530-67448788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr6:67553628-67553370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-257
               
               
               Cow position:chr6:16645280-16645033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):35, 92

               
               
               Conread position:2-257
               
               
               Cow position:chr6:27526570-27526826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 22

               
               
               Conread position:2-257
               
               
               Cow position:chr6:55538875-55539134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 184

               
               
               Conread position:2-265
               
               
               Cow position:chr6:182157-182410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:194
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):35, 24

               
               
               Conread position:2-265
               
               
               Cow position:chr6:3152611-3152348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 119

               
               
               Conread position:2-265
               
               
               Cow position:chr6:17049769-17049503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-265
               
               
               Cow position:chr6:17556278-17556541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 7

               
               
               Conread position:2-265
               
               
               Cow position:chr6:46764010-46764272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 145

               
               
               Conread position:2-265
               
               
               Cow position:chr6:61829625-61829359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-266
               
               
               Cow position:chr6:28160805-28160538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-270
               
               
               Cow position:chr6:618808-618536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):33, 173

               
               
               Conread position:2-270
               
               
               Cow position:chr6:58031173-58030901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 268

               
               
               Conread position:2-271
               
               
               Cow position:chr6:46948212-46947940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:207
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):35, 130

               
               
               Conread position:2-272
               
               
               Cow position:chr6:11721812-11722089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:2-272
               
               
               Cow position:chr6:60876692-60876415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 184

               
               
               Conread position:2-275
               
               
               Cow position:chr6:2089671-2089392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-275
               
               
               Cow position:chr6:6568835-6569117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-275
               
               
               Cow position:chr6:55239086-55238806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-276
               
               
               Cow position:chr6:1263552-1263277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 96

               
               
               Conread position:3-210
               
               
               Cow position:chr6:5096413-5096615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:167
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):32, 119

               
               
               Conread position:3-239
               
               
               Cow position:chr6:17344594-17344355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:191
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 189

               
               
               Conread position:3-245
               
               
               Cow position:chr6:44510481-44510239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):32, 55

               
               
               Conread position:3-249
               
               
               Cow position:chr6:4903606-4903851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:180
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):34, 107

               
               
               Conread position:3-252
               
               
               Cow position:chr6:51877148-51876907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:190
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):34, 75

               
               
               Conread position:3-253
               
               
               Cow position:chr6:64719711-64719459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:193
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 65

               
               
               Conread position:3-256
               
               
               Cow position:chr6:6471541-6471795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 94

               
               
               Conread position:3-256
               
               
               Cow position:chr6:9839741-9839997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:185
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):30, 149

               
               
               Conread position:3-256
               
               
               Cow position:chr6:10612225-10611965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):33, 54

               
               
               Conread position:3-256
               
               
               Cow position:chr6:12926968-12926711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 183

               
               
               Conread position:3-256
               
               
               Cow position:chr6:13314635-13314891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:193
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):34, 115

               
               
               Conread position:3-256
               
               
               Cow position:chr6:18987525-18987278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):34, 124

               
               
               Conread position:3-256
               
               
               Cow position:chr6:19044601-19044352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:191
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):34, 124

               
               
               Conread position:3-256
               
               
               Cow position:chr6:28184924-28185181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 181

               
               
               Conread position:3-256
               
               
               Cow position:chr6:31941262-31941005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 187

               
               
               Conread position:3-256
               
               
               Cow position:chr6:39136893-39136641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:197
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):34, 41

               
               
               Conread position:3-256
               
               
               Cow position:chr6:49761859-49761608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 127

               
               
               Conread position:3-256
               
               
               Cow position:chr6:50120535-50120788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 118

               
               
               Conread position:3-256
               
               
               Cow position:chr6:50637663-50637419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):34, 59

               
               
               Conread position:3-256
               
               
               Cow position:chr6:58595014-58595268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):34, 102

               
               
               Conread position:3-256
               
               
               Cow position:chr6:59596640-59596381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 216

               
               
               Conread position:3-265
               
               
               Cow position:chr6:21588379-21588114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 256

               
               
               Conread position:3-265
               
               
               Cow position:chr6:50114072-50113814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 64

               
               
               Conread position:3-272
               
               
               Cow position:chr6:11638811-11639086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:204
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):34, 109

               
               
               Conread position:3-272
               
               
               Cow position:chr6:33508641-33508371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:203
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):75, 130

               
               
               Conread position:4-188
               
               
               Cow position:chr6:52249120-52249306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:143
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:4-256
               
               
               Cow position:chr6:14851355-14851608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 81

               
               
               Conread position:4-256
               
               
               Cow position:chr6:15137779-15138035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 182

               
               
               Conread position:5-256
               
               
               Cow position:chr6:9737865-9738116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 53

               
               
               Conread position:6-256
               
               
               Cow position:chr6:43038681-43038929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:191
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):31, 14

               
               
               Conread position:8-256
               
               
               Cow position:chr6:7137952-7138202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:195
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):29, 148

               
               
               Conread position:8-257
               
               
               Cow position:chr6:13308008-13308259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 168

               
               
               Conread position:8-257
               
               
               Cow position:chr6:16410445-16410195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 141

               
               
               Conread position:8-265
               
               
               Cow position:chr6:30269512-30269773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 184

               
               
               Conread position:8-275
               
               
               Cow position:chr6:51868377-51868105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:9-249
               
               
               Cow position:chr6:1402170-1402412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:176
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:9-249
               
               
               Cow position:chr6:1406758-1407000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:177
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:9-256
               
               
               Cow position:chr6:327973-328225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 182

               
               
               Conread position:9-256
               
               
               Cow position:chr6:7105145-7105390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:183
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):119, 31

               
               
               Conread position:9-256
               
               
               Cow position:chr6:43797509-43797763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:9-256
               
               
               Cow position:chr6:59619465-59619214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 182

               
               
               Conread position:9-265
               
               
               Cow position:chr6:7176179-7176435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):28, 104

               
               
               Conread position:9-265
               
               
               Cow position:chr6:14950266-14950522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:199
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):28, 75

               
               
               Conread position:10-265
               
               
               Cow position:chr6:34405690-34405431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 180

               
               
               Conread position:13-256
               
               
               Cow position:chr6:12662930-12663177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:189
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):24, 180

               
               
               Conread position:14-256
               
               
               Cow position:chr6:28102486-28102728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:186
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):23, 49

               
               
               Conread position:14-256
               
               
               Cow position:chr6:50485400-50485646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 175

               
               
               Conread position:14-257
               
               
               Cow position:chr6:3886121-3886367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:189
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 244

               
               
               Conread position:15-256
               
               
               Cow position:chr6:10044598-10044353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:186
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:15-256
               
               
               Cow position:chr6:25179802-25180044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):22, 142

               
               
               Conread position:15-256
               
               
               Cow position:chr6:35416590-35416834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:182
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):22, 181

               
               
               Conread position:15-256
               
               
               Cow position:chr6:35704134-35704383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:190
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):23, 162

               
               
               Conread position:15-257
               
               
               Cow position:chr6:3893255-3893500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):28, 80

               
               
               Conread position:15-265
               
               
               Cow position:chr6:1096347-1096597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:168
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):20, 131

               
               
               Conread position:15-265
               
               
               Cow position:chr6:41556705-41556462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:175
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):22, 94

               
               
               Conread position:15-266
               
               
               Cow position:chr6:45793116-45792859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):19, 75

               
               
               Conread position:15-272
               
               
               Cow position:chr6:6721357-6721093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):12, 94

               
               
               Conread position:16-256
               
               
               Cow position:chr6:62326652-62326412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):20, 52

               
               
               Conread position:17-253
               
               
               Cow position:chr6:48947276-48947515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:180
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):20, 186

               
               
               Conread position:17-256
               
               
               Cow position:chr6:6182339-6182570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:189
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):20, 46

               
               
               Conread position:17-256
               
               
               Cow position:chr6:52977787-52978020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:176
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):20, 104

               
               
               Conread position:18-253
               
               
               Cow position:chr6:10695101-10694863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):19, 34

               
               
               Conread position:18-256
               
               
               Cow position:chr6:53810961-53810728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:174
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):109, 19

               
               
               Conread position:18-265
               
               
               Cow position:chr6:1274468-1274715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:183
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):17, 73

               
               
               Conread position:19-256
               
               
               Cow position:chr6:17149788-17150036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:182
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:20-256
               
               
               Cow position:chr6:68030557-68030317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:184
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):17, 171

               
               
               Conread position:25-256
               
               
               Cow position:chr6:11353800-11354040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:180
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:25-272
               
               
               Cow position:chr6:12099877-12099629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:197
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):12, 92

               
               
               Conread position:26-256
               
               
               Cow position:chr6:11168877-11168645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:182
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):101, 52

               
               
               Conread position:26-256
               
               
               Cow position:chr6:34273498-34273728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):11, 82

               
               
               Conread position:26-256
               
               
               Cow position:chr6:47149600-47149832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:172
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:34-253
               
               
               Cow position:chr6:25357504-25357720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:170
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):158, 96

               
               
               Conread position:34-256
               
               
               Cow position:chr6:27151078-27151303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:36-256
               
               
               Cow position:chr6:18962984-18963204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):179, 163

               
               
               Conread position:38-186
               
               
               Cow position:chr6:65860733-65860584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:115
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:44-256
               
               
               Cow position:chr6:1507157-1507372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):83, 164

               
               
               Conread position:44-256
               
               
               Cow position:chr6:41192678-41192464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):85, 46

               
               
               Conread position:44-256
               
               
               Cow position:chr6:66188447-66188662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:44-270
               
               
               Cow position:chr6:49963599-49963831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:177
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):83, 148

               
               
               Conread position:45-256
               
               
               Cow position:chr6:12629247-12629040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:145
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):71, 6

               
               
               Conread position:52-272
               
               
               Cow position:chr6:58016694-58016469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:181
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):79, 140

               
               
               Conread position:59-187
               
               
               Cow position:chr6:8950922-8951051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:104
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:59-256
               
               
               Cow position:chr6:33489716-33489916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):72, 131

               
               
               Conread position:63-256
               
               
               Cow position:chr6:19718919-19718723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:161
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):63, 126

               
               
               Conread position:69-183
               
               
               Cow position:chr6:3445713-3445828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:95
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:78-256
               
               
               Cow position:chr6:28399454-28399634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):49, 91

               
               
               Conread position:80-256
               
               
               Cow position:chr6:41408721-41408543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:130
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):46, 95

               
               
               Conread position:81-256
               
               
               Cow position:chr6:2453162-2452984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):46, 109

               
               
               Conread position:82-256
               
               
               Cow position:chr6:9587850-9587673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):45, 108

               
               
               Conread position:90-257
               
               
               Cow position:chr6:65892566-65892732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:120
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):106, 161

               
               
               Conread position:92-256
               
               
               Cow position:chr6:43048890-43049057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:93-256
               
               
               Cow position:chr6:20350785-20350951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:132
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):33, 97

               
               
               Conread position:94-253
               
               
               Cow position:chr6:57228895-57228733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:123
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):33, 95

               
               
               Conread position:101-256
               
               
               Cow position:chr6:366186-366023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:123
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):26, 55

               
               
               Conread position:108-256
               
               
               Cow position:chr6:57182103-57181956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):18, 84

               
               
               Conread position:112-250
               
               
               Cow position:chr6:62785054-62784914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:107
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):80, 23

               
               
               Conread position:1-253
               
               
               Cow position:chr7:33064847-33065097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:193
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):34, 79

               
               
               Conread position:1-256
               
               
               Cow position:chr7:14211937-14212200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 179

               
               
               Conread position:1-256
               
               
               Cow position:chr7:34152427-34152171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 67

               
               
               Conread position:1-256
               
               
               Cow position:chr7:37507267-37507524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:192
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 215

               
               
               Conread position:1-256
               
               
               Cow position:chr7:45945367-45945625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:197
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):36, 188

               
               
               Conread position:1-256
               
               
               Cow position:chr7:53070609-53070357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:197
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):34, 61

               
               
               Conread position:1-256
               
               
               Cow position:chr7:54482787-54483045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 190

               
               
               Conread position:1-265
               
               
               Cow position:chr7:982107-982373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 65

               
               
               Conread position:1-265
               
               
               Cow position:chr7:27572731-27572467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 185

               
               
               Conread position:1-265
               
               
               Cow position:chr7:27573306-27573042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 185

               
               
               Conread position:1-265
               
               
               Cow position:chr7:44745362-44745629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 258

               
               
               Conread position:1-272
               
               
               Cow position:chr7:30415272-30415010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:200
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):125, 12

               
               
               Conread position:1-302
               
               
               Cow position:chr7:21231531-21231838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 176

               
               
               Conread position:2-169
               
               
               Cow position:chr7:25101088-25100924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:136
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):35, 73

               
               
               Conread position:2-187
               
               
               Cow position:chr7:41405272-41405459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:156
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-187
               
               
               Cow position:chr7:65729506-65729319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-190
               
               
               Cow position:chr7:27040511-27040704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):33, 73

               
               
               Conread position:2-190
               
               
               Cow position:chr7:34424855-34424663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-210
               
               
               Cow position:chr7:39850634-39850428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-233
               
               
               Cow position:chr7:57666859-57667092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:184
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):33, 188

               
               
               Conread position:2-233
               
               
               Cow position:chr7:67432330-67432099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:172
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):124, 54

               
               
               Conread position:2-247
               
               
               Cow position:chr7:37520966-37520717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:193
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-250
               
               
               Cow position:chr7:5304498-5304750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:192
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-252
               
               
               Cow position:chr7:24805005-24805259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 154

               
               
               Conread position:2-252
               
               
               Cow position:chr7:65870013-65870263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:189
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):35, 110

               
               
               Conread position:2-253
               
               
               Cow position:chr7:5258695-5258949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 175

               
               
               Conread position:2-253
               
               
               Cow position:chr7:18871519-18871775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 81

               
               
               Conread position:2-253
               
               
               Cow position:chr7:19798975-19799230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-253
               
               
               Cow position:chr7:27713070-27712819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 56

               
               
               Conread position:2-253
               
               
               Cow position:chr7:41474845-41474585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:197
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):35, 194

               
               
               Conread position:2-253
               
               
               Cow position:chr7:64355505-64355247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):102, 35

               
               
               Conread position:2-256
               
               
               Cow position:chr7:12424-12682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr7:442775-443030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:194
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):35, 50

               
               
               Conread position:2-256
               
               
               Cow position:chr7:536369-536626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:204
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):34, 101

               
               
               Conread position:2-256
               
               
               Cow position:chr7:759370-759630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 191

               
               
               Conread position:2-256
               
               
               Cow position:chr7:845409-845151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr7:899768-900024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:192
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr7:956145-955907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:190
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr7:1330930-1331184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 119

               
               
               Conread position:2-256
               
               
               Cow position:chr7:1367207-1367465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 183

               
               
               Conread position:2-256
               
               
               Cow position:chr7:1441348-1441606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr7:3297192-3297450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr7:5849823-5850081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 185

               
               
               Conread position:2-256
               
               
               Cow position:chr7:6625890-6626144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:189
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):125, 35

               
               
               Conread position:2-256
               
               
               Cow position:chr7:6628284-6628538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:189
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):125, 35

               
               
               Conread position:2-256
               
               
               Cow position:chr7:6666988-6666730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr7:7249278-7249536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr7:7262002-7261748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 119

               
               
               Conread position:2-256
               
               
               Cow position:chr7:7278044-7277784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 190

               
               
               Conread position:2-256
               
               
               Cow position:chr7:8140595-8140853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:193
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr7:10427933-10428190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:198
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):36, 93

               
               
               Conread position:2-256
               
               
               Cow position:chr7:10604606-10604868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:199
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr7:11460649-11460907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr7:13530418-13530676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 184

               
               
               Conread position:2-256
               
               
               Cow position:chr7:13806160-13806418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr7:14131596-14131338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr7:14135327-14135584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr7:18256450-18256708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr7:19463360-19463618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 184

               
               
               Conread position:2-256
               
               
               Cow position:chr7:19926375-19926633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 24

               
               
               Conread position:2-256
               
               
               Cow position:chr7:21124182-21124440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr7:21323749-21323491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr7:21423881-21424138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:188
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr7:21990130-21989864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr7:22598503-22598245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr7:23141040-23140782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:193
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr7:24423126-24422869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 169

               
               
               Conread position:2-256
               
               
               Cow position:chr7:25416423-25416165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr7:26926689-26926947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 191

               
               
               Conread position:2-256
               
               
               Cow position:chr7:33334936-33334678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr7:33957254-33956989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:203
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):35, 45

               
               
               Conread position:2-256
               
               
               Cow position:chr7:34229244-34229502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr7:34489394-34489136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 191

               
               
               Conread position:2-256
               
               
               Cow position:chr7:34548078-34547822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):125, 236

               
               
               Conread position:2-256
               
               
               Cow position:chr7:34819545-34819288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 88

               
               
               Conread position:2-256
               
               
               Cow position:chr7:36343296-36343553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr7:37190154-37189896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr7:39795354-39795096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr7:40203482-40203224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr7:40318187-40317929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 187

               
               
               Conread position:2-256
               
               
               Cow position:chr7:43394548-43394788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:195
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):33, 56

               
               
               Conread position:2-256
               
               
               Cow position:chr7:45100489-45100231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr7:45171019-45170765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 37

               
               
               Conread position:2-256
               
               
               Cow position:chr7:45765838-45766096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr7:46187507-46187251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 16

               
               
               Conread position:2-256
               
               
               Cow position:chr7:46195401-46195142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr7:46266649-46266397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:197
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):35, 89

               
               
               Conread position:2-256
               
               
               Cow position:chr7:46749469-46749215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 169

               
               
               Conread position:2-256
               
               
               Cow position:chr7:49217239-49216986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:191
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):35, 126

               
               
               Conread position:2-256
               
               
               Cow position:chr7:49844794-49845049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):124, 38

               
               
               Conread position:2-256
               
               
               Cow position:chr7:50535799-50536057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr7:52167276-52167018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr7:52762043-52762302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr7:54186921-54187180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 60

               
               
               Conread position:2-256
               
               
               Cow position:chr7:54807862-54808119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 187

               
               
               Conread position:2-256
               
               
               Cow position:chr7:54822934-54823192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr7:55041999-55041742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr7:55534432-55534690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr7:58196678-58196936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 184

               
               
               Conread position:2-256
               
               
               Cow position:chr7:59437253-59437001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 125

               
               
               Conread position:2-256
               
               
               Cow position:chr7:59774794-59774541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 22

               
               
               Conread position:2-256
               
               
               Cow position:chr7:60279430-60279690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr7:60726966-60727224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 187

               
               
               Conread position:2-256
               
               
               Cow position:chr7:61576647-61576897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr7:61832007-61832264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:189
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr7:62991204-62990947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 184

               
               
               Conread position:2-256
               
               
               Cow position:chr7:64012913-64012655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:197
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr7:64237045-64237303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:194
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):32, 50

               
               
               Conread position:2-256
               
               
               Cow position:chr7:64238573-64238830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 107

               
               
               Conread position:2-256
               
               
               Cow position:chr7:65556931-65557188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 26

               
               
               Conread position:2-256
               
               
               Cow position:chr7:66224192-66224447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:191
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):35, 143

               
               
               Conread position:2-256
               
               
               Cow position:chr7:66298516-66298767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):35, 96

               
               
               Conread position:2-256
               
               
               Cow position:chr7:66908730-66908473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-257
               
               
               Cow position:chr7:11440343-11440601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 175

               
               
               Conread position:2-257
               
               
               Cow position:chr7:13854704-13854448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 130

               
               
               Conread position:2-257
               
               
               Cow position:chr7:58302688-58302945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:190
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):35, 11

               
               
               Conread position:2-257
               
               
               Cow position:chr7:67802816-67802557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 184

               
               
               Conread position:2-265
               
               
               Cow position:chr7:3634258-3634525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 191

               
               
               Conread position:2-265
               
               
               Cow position:chr7:27394613-27394351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:203
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):36, 49

               
               
               Conread position:2-265
               
               
               Cow position:chr7:36128253-36127988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:198
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):35, 191

               
               
               Conread position:2-265
               
               
               Cow position:chr7:49784239-49784495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:199
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):35, 60

               
               
               Conread position:2-268
               
               
               Cow position:chr7:65712134-65711862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-269
               
               
               Cow position:chr7:58138211-58137944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 88

               
               
               Conread position:2-270
               
               
               Cow position:chr7:54662-54935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:210
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):35, 170

               
               
               Conread position:2-270
               
               
               Cow position:chr7:25230517-25230246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):125, 38

               
               
               Conread position:2-270
               
               
               Cow position:chr7:63389480-63389207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 267

               
               
               Conread position:2-302
               
               
               Cow position:chr7:46898889-46899189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-320
               
               
               Cow position:chr7:14539116-14538792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:3-168
               
               
               Cow position:chr7:22358219-22358382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):32, 87

               
               
               Conread position:3-180
               
               
               Cow position:chr7:33803994-33803824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:143
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):34, 124

               
               
               Conread position:3-187
               
               
               Cow position:chr7:23554450-23554267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:154
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 55

               
               
               Conread position:3-187
               
               
               Cow position:chr7:60757728-60757913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:149
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:3-239
               
               
               Cow position:chr7:63947631-63947869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:178
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):38, 190

               
               
               Conread position:3-249
               
               
               Cow position:chr7:49070146-49070396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 198

               
               
               Conread position:3-250
               
               
               Cow position:chr7:53037791-53038041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:193
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):34, 153

               
               
               Conread position:3-252
               
               
               Cow position:chr7:12659730-12659976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):37, 141

               
               
               Conread position:3-252
               
               
               Cow position:chr7:19096810-19097062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:192
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 59

               
               
               Conread position:3-253
               
               
               Cow position:chr7:10070452-10070704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:3-253
               
               
               Cow position:chr7:19398712-19398963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 87

               
               
               Conread position:3-253
               
               
               Cow position:chr7:24797896-24798150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:188
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):34, 72

               
               
               Conread position:3-253
               
               
               Cow position:chr7:41463520-41463266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 137

               
               
               Conread position:3-253
               
               
               Cow position:chr7:49743606-49743356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:190
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):34, 63

               
               
               Conread position:3-253
               
               
               Cow position:chr7:50020462-50020708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:175
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):32, 97

               
               
               Conread position:3-253
               
               
               Cow position:chr7:58614055-58613809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):186, 37

               
               
               Conread position:3-254
               
               
               Cow position:chr7:27142479-27142226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 144

               
               
               Conread position:3-256
               
               
               Cow position:chr7:5250681-5250936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):34, 59

               
               
               Conread position:3-256
               
               
               Cow position:chr7:19467011-19467267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 183

               
               
               Conread position:3-256
               
               
               Cow position:chr7:20435319-20435066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:190
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):34, 118

               
               
               Conread position:3-256
               
               
               Cow position:chr7:20795990-20796241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:197
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):34, 94

               
               
               Conread position:3-256
               
               
               Cow position:chr7:23457529-23457783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:191
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):35, 55

               
               
               Conread position:3-256
               
               
               Cow position:chr7:24873809-24874069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:3-256
               
               
               Cow position:chr7:26884936-26884690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):33, 49

               
               
               Conread position:3-256
               
               
               Cow position:chr7:31877956-31877705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 124

               
               
               Conread position:3-256
               
               
               Cow position:chr7:32713135-32713386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 127

               
               
               Conread position:3-256
               
               
               Cow position:chr7:33069029-33069278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:200
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):34, 59

               
               
               Conread position:3-256
               
               
               Cow position:chr7:33790749-33790492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 189

               
               
               Conread position:3-256
               
               
               Cow position:chr7:38189092-38188839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):124, 64

               
               
               Conread position:3-256
               
               
               Cow position:chr7:41872839-41873090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):40, 154

               
               
               Conread position:3-256
               
               
               Cow position:chr7:42594062-42594313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 128

               
               
               Conread position:3-256
               
               
               Cow position:chr7:42873622-42873374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 55

               
               
               Conread position:3-256
               
               
               Cow position:chr7:49647595-49647340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):36, 162

               
               
               Conread position:3-256
               
               
               Cow position:chr7:49826879-49827130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:189
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):34, 64

               
               
               Conread position:3-256
               
               
               Cow position:chr7:50961564-50961306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 187

               
               
               Conread position:3-256
               
               
               Cow position:chr7:51675418-51675165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 99

               
               
               Conread position:3-256
               
               
               Cow position:chr7:52044928-52044681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:192
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):35, 187

               
               
               Conread position:3-256
               
               
               Cow position:chr7:53362710-53362963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 118

               
               
               Conread position:3-256
               
               
               Cow position:chr7:57161247-57161500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 119

               
               
               Conread position:3-256
               
               
               Cow position:chr7:57910852-57910595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 187

               
               
               Conread position:3-256
               
               
               Cow position:chr7:64104144-64104398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:184
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):33, 93

               
               
               Conread position:3-256
               
               
               Cow position:chr7:64405796-64405541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 186

               
               
               Conread position:3-256
               
               
               Cow position:chr7:67872246-67871992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:197
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):32, 49

               
               
               Conread position:3-257
               
               
               Cow position:chr7:3158773-3158521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 15

               
               
               Conread position:3-257
               
               
               Cow position:chr7:39095037-39095281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):34, 59

               
               
               Conread position:3-257
               
               
               Cow position:chr7:67759708-67759460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:186
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):37, 76

               
               
               Conread position:3-261
               
               
               Cow position:chr7:62394267-62394010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 64

               
               
               Conread position:3-262
               
               
               Cow position:chr7:54785328-54785583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:193
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):32, 44

               
               
               Conread position:3-265
               
               
               Cow position:chr7:56822235-56822498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 187

               
               
               Conread position:4-186
               
               
               Cow position:chr7:63570082-63570267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:150
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:4-187
               
               
               Cow position:chr7:44597451-44597634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:147
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):32, 128

               
               
               Conread position:4-256
               
               
               Cow position:chr7:548260-548004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 189

               
               
               Conread position:4-256
               
               
               Cow position:chr7:12483685-12483433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:193
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 86

               
               
               Conread position:4-256
               
               
               Cow position:chr7:16934790-16934533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 183

               
               
               Conread position:4-256
               
               
               Cow position:chr7:21147917-21147665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:192
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):33, 190

               
               
               Conread position:4-256
               
               
               Cow position:chr7:29473919-29473672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:191
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):33, 70

               
               
               Conread position:4-256
               
               
               Cow position:chr7:40709237-40708982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:193
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 192

               
               
               Conread position:4-257
               
               
               Cow position:chr7:13238120-13238378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:5-250
               
               
               Cow position:chr7:18308197-18308441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:180
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):121, 184

               
               
               Conread position:5-253
               
               
               Cow position:chr7:27995095-27995341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):121, 154

               
               
               Conread position:5-265
               
               
               Cow position:chr7:27552445-27552705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 90

               
               
               Conread position:6-256
               
               
               Cow position:chr7:27098787-27099041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 185

               
               
               Conread position:8-256
               
               
               Cow position:chr7:1556866-1556629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):29, 62

               
               
               Conread position:8-256
               
               
               Cow position:chr7:64353447-64353198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 187

               
               
               Conread position:8-265
               
               
               Cow position:chr7:14081714-14081972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:195
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):28, 82

               
               
               Conread position:9-155
               
               
               Cow position:chr7:42334607-42334460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:126
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):28, 61

               
               
               Conread position:9-171
               
               
               Cow position:chr7:21326304-21326151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:123
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):27, 53

               
               
               Conread position:9-172
               
               
               Cow position:chr7:49735260-49735091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:9-256
               
               
               Cow position:chr7:28162554-28162305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:193
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:9-256
               
               
               Cow position:chr7:29382390-29382139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:194
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):28, 182

               
               
               Conread position:9-256
               
               
               Cow position:chr7:30172768-30173010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 54

               
               
               Conread position:9-256
               
               
               Cow position:chr7:42431112-42430866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 134

               
               
               Conread position:9-256
               
               
               Cow position:chr7:60741461-60741710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 181

               
               
               Conread position:9-256
               
               
               Cow position:chr7:63022359-63022107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:186
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):81, 48

               
               
               Conread position:10-256
               
               
               Cow position:chr7:33308764-33309014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 180

               
               
               Conread position:12-184
               
               
               Cow position:chr7:259310-259484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:142
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:12-252
               
               
               Cow position:chr7:58335546-58335785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:193
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 11

               
               
               Conread position:13-256
               
               
               Cow position:chr7:8741806-8742047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:182
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):22, 77

               
               
               Conread position:14-252
               
               
               Cow position:chr7:26455768-26456009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:186
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 102

               
               
               Conread position:14-256
               
               
               Cow position:chr7:47190265-47190513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 179

               
               
               Conread position:14-256
               
               
               Cow position:chr7:62702171-62702416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):113, 176

               
               
               Conread position:15-176
               
               
               Cow position:chr7:6267653-6267493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:138
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:15-252
               
               
               Cow position:chr7:23130276-23130035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):22, 137

               
               
               Conread position:15-253
               
               
               Cow position:chr7:19949404-19949642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):136, 18

               
               
               Conread position:15-256
               
               
               Cow position:chr7:3128778-3128534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 145

               
               
               Conread position:15-256
               
               
               Cow position:chr7:51019057-51018814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:192
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 106

               
               
               Conread position:15-266
               
               
               Cow position:chr7:24741637-24741895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:15-270
               
               
               Cow position:chr7:5404306-5404559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 115

               
               
               Conread position:15-270
               
               
               Cow position:chr7:51630473-51630219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):20, 64

               
               
               Conread position:16-256
               
               
               Cow position:chr7:65326281-65326507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):21, 111

               
               
               Conread position:17-256
               
               
               Cow position:chr7:38145408-38145644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:178
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):20, 58

               
               
               Conread position:18-189
               
               
               Cow position:chr7:66750572-66750743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):19, 80

               
               
               Conread position:18-256
               
               
               Cow position:chr7:54582922-54582684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:186
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):19, 136

               
               
               Conread position:18-256
               
               
               Cow position:chr7:58921611-58921382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:174
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):17, 40

               
               
               Conread position:19-249
               
               
               Cow position:chr7:44621937-44622171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:187
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):18, 144

               
               
               Conread position:19-275
               
               
               Cow position:chr7:29346477-29346729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 71

               
               
               Conread position:23-272
               
               
               Cow position:chr7:48638159-48637923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:188
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):232, 13

               
               
               Conread position:25-253
               
               
               Cow position:chr7:54638425-54638651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):10, 66

               
               
               Conread position:25-256
               
               
               Cow position:chr7:34413068-34413305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:175
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):7, 41

               
               
               Conread position:26-209
               
               
               Cow position:chr7:28621722-28621541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:145
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):11, 163

               
               
               Conread position:27-256
               
               
               Cow position:chr7:18499534-18499766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):10, 212

               
               
               Conread position:28-256
               
               
               Cow position:chr7:20150267-20150499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:182
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):9, 162

               
               
               Conread position:29-256
               
               
               Cow position:chr7:1600278-1600522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:29-256
               
               
               Cow position:chr7:11420119-11420350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:184
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):8, 162

               
               
               Conread position:30-256
               
               
               Cow position:chr7:61424070-61424298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):7, 80

               
               
               Conread position:34-270
               
               
               Cow position:chr7:62952780-62952543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:186
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 45

               
               
               Conread position:36-256
               
               
               Cow position:chr7:60356669-60356896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):12, 185

               
               
               Conread position:38-256
               
               
               Cow position:chr7:998641-998423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:175
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):88, 51

               
               
               Conread position:38-256
               
               
               Cow position:chr7:59141663-59141444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:160
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):98, 154

               
               
               Conread position:44-256
               
               
               Cow position:chr7:31259513-31259728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:166
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):83, 146

               
               
               Conread position:48-256
               
               
               Cow position:chr7:24955665-24955458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):144, 72

               
               
               Conread position:59-210
               
               
               Cow position:chr7:19457192-19457340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):68, 133

               
               
               Conread position:68-256
               
               
               Cow position:chr7:38400268-38400080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):126, 61

               
               
               Conread position:82-256
               
               
               Cow position:chr7:35919905-35920082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):45, 107

               
               
               Conread position:83-256
               
               
               Cow position:chr7:41747325-41747501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):44, 109

               
               
               Conread position:89-256
               
               
               Cow position:chr7:5207904-5208074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:134
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):38, 100

               
               
               Conread position:104-265
               
               
               Cow position:chr7:6723418-6723256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:127
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):23, 85

               
               
               Conread position:106-256
               
               
               Cow position:chr7:33281356-33281503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:113
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):21, 80

               
               
               Conread position:1-256
               
               
               Cow position:chr8:4690073-4689814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:1-256
               
               
               Cow position:chr8:32042462-32042203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 190

               
               
               Conread position:1-256
               
               
               Cow position:chr8:44113752-44113493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:1-256
               
               
               Cow position:chr8:55270855-55271114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 190

               
               
               Conread position:2-168
               
               
               Cow position:chr8:46480655-46480823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:145
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:2-183
               
               
               Cow position:chr8:45191756-45191585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):31, 98

               
               
               Conread position:2-189
               
               
               Cow position:chr8:28880071-28879882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:149
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):35, 48

               
               
               Conread position:2-209
               
               
               Cow position:chr8:47751473-47751677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:163
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):35, 7

               
               
               Conread position:2-210
               
               
               Cow position:chr8:42159299-42159092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:166
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-235
               
               
               Cow position:chr8:46961691-46961454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:182
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-251
               
               
               Cow position:chr8:5020678-5020425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 188

               
               
               Conread position:2-252
               
               
               Cow position:chr8:1111130-1110878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):200, 189

               
               
               Conread position:2-252
               
               
               Cow position:chr8:3332990-3333245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:192
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-252
               
               
               Cow position:chr8:8382070-8381816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-252
               
               
               Cow position:chr8:11240983-11240729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-253
               
               
               Cow position:chr8:11805448-11805196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 45

               
               
               Conread position:2-253
               
               
               Cow position:chr8:19052956-19052701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 184

               
               
               Conread position:2-253
               
               
               Cow position:chr8:21252910-21252657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):210, 187

               
               
               Conread position:2-253
               
               
               Cow position:chr8:25534800-25534554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:190
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 60

               
               
               Conread position:2-253
               
               
               Cow position:chr8:30158356-30158099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:2-253
               
               
               Cow position:chr8:41650404-41650149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:195
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):22, 185

               
               
               Conread position:2-253
               
               
               Cow position:chr8:42427921-42428176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-253
               
               
               Cow position:chr8:45792066-45792312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:196
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):124, 37

               
               
               Conread position:2-253
               
               
               Cow position:chr8:47676502-47676254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):36, 96

               
               
               Conread position:2-253
               
               
               Cow position:chr8:49964251-49964506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-253
               
               
               Cow position:chr8:50927433-50927687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:187
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):35, 42

               
               
               Conread position:2-256
               
               
               Cow position:chr8:45826-45568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr8:817153-816898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr8:1150621-1150879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr8:1322691-1322433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:200
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):35, 76

               
               
               Conread position:2-256
               
               
               Cow position:chr8:1345300-1345557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:196
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):35, 78

               
               
               Conread position:2-256
               
               
               Cow position:chr8:1468804-1468540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:196
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):35, 88

               
               
               Conread position:2-256
               
               
               Cow position:chr8:1598051-1598294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:193
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):124, 35

               
               
               Conread position:2-256
               
               
               Cow position:chr8:2166853-2167111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr8:2748644-2748400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:183
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):43, 141

               
               
               Conread position:2-256
               
               
               Cow position:chr8:3788092-3787839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:196
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):35, 125

               
               
               Conread position:2-256
               
               
               Cow position:chr8:3853224-3853476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:197
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):34, 125

               
               
               Conread position:2-256
               
               
               Cow position:chr8:3956850-3956593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 71

               
               
               Conread position:2-256
               
               
               Cow position:chr8:4298380-4298120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 11

               
               
               Conread position:2-256
               
               
               Cow position:chr8:4614959-4615217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr8:4727957-4728215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr8:5195784-5195526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr8:6202616-6202873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 139

               
               
               Conread position:2-256
               
               
               Cow position:chr8:6464477-6464735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr8:6747895-6748139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:192
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):35, 68

               
               
               Conread position:2-256
               
               
               Cow position:chr8:7167629-7167371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 191

               
               
               Conread position:2-256
               
               
               Cow position:chr8:7427247-7427505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr8:8016400-8016652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 125

               
               
               Conread position:2-256
               
               
               Cow position:chr8:8227735-8227987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:187
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):35, 65

               
               
               Conread position:2-256
               
               
               Cow position:chr8:8514406-8514663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 88

               
               
               Conread position:2-256
               
               
               Cow position:chr8:8652684-8652942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:191
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):35, 217

               
               
               Conread position:2-256
               
               
               Cow position:chr8:9739193-9738935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr8:10739904-10740162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr8:10752020-10751762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr8:11118286-11118537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 60

               
               
               Conread position:2-256
               
               
               Cow position:chr8:12078137-12078395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr8:12287607-12287349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr8:13831264-13831521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr8:14258746-14258497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:196
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):35, 80

               
               
               Conread position:2-256
               
               
               Cow position:chr8:14588201-14588458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 12

               
               
               Conread position:2-256
               
               
               Cow position:chr8:14925216-14925472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:192
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):35, 103

               
               
               Conread position:2-256
               
               
               Cow position:chr8:15224470-15224216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 119

               
               
               Conread position:2-256
               
               
               Cow position:chr8:15864634-15864893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 190

               
               
               Conread position:2-256
               
               
               Cow position:chr8:16194790-16194532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr8:16384306-16384554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:190
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):35, 19

               
               
               Conread position:2-256
               
               
               Cow position:chr8:18402649-18402914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr8:18657064-18657320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:192
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr8:19334260-19334001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 184

               
               
               Conread position:2-256
               
               
               Cow position:chr8:19893690-19893431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:199
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):35, 190

               
               
               Conread position:2-256
               
               
               Cow position:chr8:21043264-21043006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr8:21090659-21090917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr8:21789157-21789415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 184

               
               
               Conread position:2-256
               
               
               Cow position:chr8:22030786-22030528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr8:22376517-22376774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 99

               
               
               Conread position:2-256
               
               
               Cow position:chr8:22531554-22531812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr8:22568623-22568881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr8:23119863-23119602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:199
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):67, 190

               
               
               Conread position:2-256
               
               
               Cow position:chr8:24724467-24724209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr8:25613944-25613686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr8:25772970-25773227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:196
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):35, 141

               
               
               Conread position:2-256
               
               
               Cow position:chr8:26013940-26013686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 61

               
               
               Conread position:2-256
               
               
               Cow position:chr8:26039288-26039029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 143

               
               
               Conread position:2-256
               
               
               Cow position:chr8:26607150-26606895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 88

               
               
               Conread position:2-256
               
               
               Cow position:chr8:26879210-26878952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:193
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr8:27552010-27552268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr8:27942498-27942756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr8:31976735-31976993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:195
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr8:32314956-32315214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr8:33045331-33045589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr8:33592034-33591773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:194
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):35, 83

               
               
               Conread position:2-256
               
               
               Cow position:chr8:33898249-33898505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:192
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 19

               
               
               Conread position:2-256
               
               
               Cow position:chr8:35128123-35128381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr8:35211929-35212187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:188
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr8:35472974-35472716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr8:35529351-35529093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr8:39141316-39141058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr8:39192238-39192496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr8:39740018-39740276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:192
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr8:40584740-40584482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:193
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr8:42748719-42748461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 191

               
               
               Conread position:2-256
               
               
               Cow position:chr8:46106068-46105826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:199
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):33, 70

               
               
               Conread position:2-256
               
               
               Cow position:chr8:47065931-47066189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr8:49220852-49220600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 106

               
               
               Conread position:2-256
               
               
               Cow position:chr8:49620110-49619854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 110

               
               
               Conread position:2-256
               
               
               Cow position:chr8:50283546-50283804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr8:50430471-50430728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 139

               
               
               Conread position:2-256
               
               
               Cow position:chr8:50682686-50682942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 234

               
               
               Conread position:2-256
               
               
               Cow position:chr8:51019487-51019745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:196
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):35, 187

               
               
               Conread position:2-256
               
               
               Cow position:chr8:51446485-51446743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr8:51603214-51603471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 88

               
               
               Conread position:2-256
               
               
               Cow position:chr8:51674819-51674561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr8:53821745-53821487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr8:53838603-53838346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 154

               
               
               Conread position:2-256
               
               
               Cow position:chr8:54479194-54478936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr8:59258320-59258587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 198

               
               
               Conread position:2-256
               
               
               Cow position:chr8:60064768-60064514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:193
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 119

               
               
               Conread position:2-256
               
               
               Cow position:chr8:60067549-60067292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:192
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):124, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr8:60769731-60769989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr8:61197599-61197857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-261
               
               
               Cow position:chr8:30483577-30483835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):34, 47

               
               
               Conread position:2-265
               
               
               Cow position:chr8:8914397-8914131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 184

               
               
               Conread position:2-265
               
               
               Cow position:chr8:51884089-51884353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):35, 89

               
               
               Conread position:2-266
               
               
               Cow position:chr8:8468946-8468679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 184

               
               
               Conread position:2-270
               
               
               Cow position:chr8:13931269-13931539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 190

               
               
               Conread position:2-270
               
               
               Cow position:chr8:25671963-25671690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:210
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):35, 141

               
               
               Conread position:2-272
               
               
               Cow position:chr8:49284401-49284676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:207
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):35, 191

               
               
               Conread position:2-302
               
               
               Cow position:chr8:17489341-17489633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:216
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):34, 72

               
               
               Conread position:3-154
               
               
               Cow position:chr8:7682357-7682510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:134
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:3-187
               
               
               Cow position:chr8:43109747-43109929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:141
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:3-210
               
               
               Cow position:chr8:42009613-42009408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:172
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 187

               
               
               Conread position:3-239
               
               
               Cow position:chr8:18991627-18991867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:193
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:3-250
               
               
               Cow position:chr8:33585409-33585161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:188
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):32, 201

               
               
               Conread position:3-250
               
               
               Cow position:chr8:34400205-34399962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 44

               
               
               Conread position:3-250
               
               
               Cow position:chr8:46951340-46951097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):173, 37

               
               
               Conread position:3-252
               
               
               Cow position:chr8:30418291-30418044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:184
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):34, 129

               
               
               Conread position:3-253
               
               
               Cow position:chr8:9687995-9687742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 59

               
               
               Conread position:3-256
               
               
               Cow position:chr8:2823488-2823743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 187

               
               
               Conread position:3-256
               
               
               Cow position:chr8:4923573-4923315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:188
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):35, 55

               
               
               Conread position:3-256
               
               
               Cow position:chr8:6061808-6062064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:193
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 153

               
               
               Conread position:3-256
               
               
               Cow position:chr8:11372987-11373236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 49

               
               
               Conread position:3-256
               
               
               Cow position:chr8:12806421-12806179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):210, 37

               
               
               Conread position:3-256
               
               
               Cow position:chr8:13322507-13322773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):34, 196

               
               
               Conread position:3-256
               
               
               Cow position:chr8:17200345-17200599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 15

               
               
               Conread position:3-256
               
               
               Cow position:chr8:19546013-19545758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 140

               
               
               Conread position:3-256
               
               
               Cow position:chr8:20672986-20673240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 70

               
               
               Conread position:3-256
               
               
               Cow position:chr8:43902835-43902581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 156

               
               
               Conread position:3-256
               
               
               Cow position:chr8:47666891-47667148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 187

               
               
               Conread position:3-256
               
               
               Cow position:chr8:51702237-51701977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:198
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):32, 65

               
               
               Conread position:3-256
               
               
               Cow position:chr8:53429061-53428806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 163

               
               
               Conread position:3-256
               
               
               Cow position:chr8:53450716-53450459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:3-256
               
               
               Cow position:chr8:54015486-54015229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 188

               
               
               Conread position:3-265
               
               
               Cow position:chr8:29031019-29031275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):34, 114

               
               
               Conread position:3-265
               
               
               Cow position:chr8:39165733-39165997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:194
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):34, 113

               
               
               Conread position:3-269
               
               
               Cow position:chr8:8010063-8009795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:180
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):32, 165

               
               
               Conread position:3-271
               
               
               Cow position:chr8:1115600-1115859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 125

               
               
               Conread position:3-272
               
               
               Cow position:chr8:1935980-1935711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:209
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):34, 113

               
               
               Conread position:3-272
               
               
               Cow position:chr8:12795058-12794786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 183

               
               
               Conread position:3-272
               
               
               Cow position:chr8:45131066-45131337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:197
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):102, 54

               
               
               Conread position:4-180
               
               
               Cow position:chr8:55358606-55358429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:151
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 17

               
               
               Conread position:4-253
               
               
               Cow position:chr8:51061472-51061727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:4-256
               
               
               Cow position:chr8:38561775-38562031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:4-256
               
               
               Cow position:chr8:46800091-46800339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):33, 96

               
               
               Conread position:4-257
               
               
               Cow position:chr8:41659142-41659397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 186

               
               
               Conread position:8-256
               
               
               Cow position:chr8:45354838-45355070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:188
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):26, 56

               
               
               Conread position:9-145
               
               
               Cow position:chr8:45246167-45246303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):28, 100

               
               
               Conread position:9-210
               
               
               Cow position:chr8:38710649-38710845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):118, 26

               
               
               Conread position:9-253
               
               
               Cow position:chr8:8918053-8918304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):44, 93

               
               
               Conread position:9-256
               
               
               Cow position:chr8:21118113-21118360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:186
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):28, 107

               
               
               Conread position:9-256
               
               
               Cow position:chr8:21219379-21219138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 38

               
               
               Conread position:9-256
               
               
               Cow position:chr8:24193202-24192952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 180

               
               
               Conread position:9-256
               
               
               Cow position:chr8:26625080-26624827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:9-256
               
               
               Cow position:chr8:37933976-37933727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 182

               
               
               Conread position:9-256
               
               
               Cow position:chr8:43858853-43859101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):28, 92

               
               
               Conread position:9-256
               
               
               Cow position:chr8:45070594-45070344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 153

               
               
               Conread position:10-253
               
               
               Cow position:chr8:50734561-50734334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:177
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):205, 24

               
               
               Conread position:10-256
               
               
               Cow position:chr8:1583138-1582888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:192
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):27, 183

               
               
               Conread position:10-256
               
               
               Cow position:chr8:41641579-41641823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:180
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):26, 46

               
               
               Conread position:10-256
               
               
               Cow position:chr8:42117015-42116776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:198
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):26, 116

               
               
               Conread position:13-256
               
               
               Cow position:chr8:4273930-4273688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:189
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):26, 13

               
               
               Conread position:14-210
               
               
               Cow position:chr8:2889358-2889164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:157
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):23, 176

               
               
               Conread position:14-256
               
               
               Cow position:chr8:1500292-1500537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:178
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):22, 133

               
               
               Conread position:15-185
               
               
               Cow position:chr8:9963399-9963570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):20, 150

               
               
               Conread position:15-252
               
               
               Cow position:chr8:44856174-44855935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):22, 152

               
               
               Conread position:15-253
               
               
               Cow position:chr8:21225100-21224865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:178
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):22, 106

               
               
               Conread position:15-256
               
               
               Cow position:chr8:24231100-24230864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:174
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):112, 21

               
               
               Conread position:15-256
               
               
               Cow position:chr8:25342850-25342611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:187
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):23, 47

               
               
               Conread position:15-256
               
               
               Cow position:chr8:41263553-41263297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:185
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):22, 161

               
               
               Conread position:15-256
               
               
               Cow position:chr8:45151999-45152242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:189
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):22, 52

               
               
               Conread position:15-256
               
               
               Cow position:chr8:45688184-45688426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):22, 139

               
               
               Conread position:15-257
               
               
               Cow position:chr8:44703470-44703230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:196
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):21, 13

               
               
               Conread position:15-266
               
               
               Cow position:chr8:31886138-31885884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:177
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):22, 151

               
               
               Conread position:15-270
               
               
               Cow position:chr8:21152644-21152902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):22, 83

               
               
               Conread position:16-256
               
               
               Cow position:chr8:49720336-49720085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:183
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:16-274
               
               
               Cow position:chr8:24372791-24373044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):20, 42

               
               
               Conread position:17-256
               
               
               Cow position:chr8:18568245-18568487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:188
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 160

               
               
               Conread position:18-256
               
               
               Cow position:chr8:26394287-26394045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:190
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:18-256
               
               
               Cow position:chr8:53320174-53319938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:191
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 152

               
               
               Conread position:18-265
               
               
               Cow position:chr8:12057225-12056972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:182
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):19, 244

               
               
               Conread position:18-265
               
               
               Cow position:chr8:41950829-41950587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:173
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):20, 33

               
               
               Conread position:21-256
               
               
               Cow position:chr8:25414265-25414025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:186
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):16, 171

               
               
               Conread position:26-256
               
               
               Cow position:chr8:47889456-47889222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:179
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):10, 121

               
               
               Conread position:26-256
               
               
               Cow position:chr8:49361372-49361151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):100, 8

               
               
               Conread position:27-248
               
               
               Cow position:chr8:48955127-48954903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):10, 69

               
               
               Conread position:28-256
               
               
               Cow position:chr8:24872627-24872848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):162, 39

               
               
               Conread position:29-256
               
               
               Cow position:chr8:49841669-49841438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:179
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):8, 161

               
               
               Conread position:43-256
               
               
               Cow position:chr8:8398513-8398729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:161
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:59-187
               
               
               Cow position:chr8:8160674-8160545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:105
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:63-256
               
               
               Cow position:chr8:51254040-51254234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):64, 9

               
               
               Conread position:65-256
               
               
               Cow position:chr8:47658722-47658917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:156
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):61, 124

               
               
               Conread position:68-265
               
               
               Cow position:chr8:12311282-12311478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):6, 123

               
               
               Conread position:69-256
               
               
               Cow position:chr8:27288132-27288318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:150
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):5, 22

               
               
               Conread position:69-265
               
               
               Cow position:chr8:9169852-9170049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):5, 118

               
               
               Conread position:74-257
               
               
               Cow position:chr8:8902799-8902976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):53, 91

               
               
               Conread position:78-256
               
               
               Cow position:chr8:12740555-12740729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):128, 42

               
               
               Conread position:78-256
               
               
               Cow position:chr8:16733918-16733739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):134, 53

               
               
               Conread position:81-253
               
               
               Cow position:chr8:53981200-53981034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:138
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):45, 108

               
               
               Conread position:86-256
               
               
               Cow position:chr8:45337576-45337750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):9, 105

               
               
               Conread position:101-256
               
               
               Cow position:chr8:7688197-7688355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:124
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):26, 88

               
               
               Conread position:102-294
               
               
               Cow position:chr8:49520953-49520756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):25, 88

               
               
               Conread position:1-210
               
               
               Cow position:chr9:5533614-5533813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:164
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):37, 15

               
               
               Conread position:1-253
               
               
               Cow position:chr9:3546144-3545897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):35, 98

               
               
               Conread position:1-256
               
               
               Cow position:chr9:771922-772179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:193
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:1-256
               
               
               Cow position:chr9:40143027-40143284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 81

               
               
               Conread position:2-183
               
               
               Cow position:chr9:47882964-47883141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:147
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):35, 96

               
               
               Conread position:2-187
               
               
               Cow position:chr9:6304761-6304573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:2-187
               
               
               Cow position:chr9:29106200-29106013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:149
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-190
               
               
               Cow position:chr9:12378770-12378583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:153
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):35, 22

               
               
               Conread position:2-207
               
               
               Cow position:chr9:37908172-37907969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:164
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-250
               
               
               Cow position:chr9:33843648-33843396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-252
               
               
               Cow position:chr9:2548373-2548624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:191
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):124, 26

               
               
               Conread position:2-253
               
               
               Cow position:chr9:1307027-1307282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 188

               
               
               Conread position:2-253
               
               
               Cow position:chr9:2618460-2618727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:191
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-253
               
               
               Cow position:chr9:6764444-6764702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:189
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):35, 175

               
               
               Conread position:2-253
               
               
               Cow position:chr9:10567036-10567295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:193
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):35, 111

               
               
               Conread position:2-253
               
               
               Cow position:chr9:12260040-12260295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:187
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:2-253
               
               
               Cow position:chr9:26326070-26325816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 73

               
               
               Conread position:2-256
               
               
               Cow position:chr9:35236-35484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):135, 38

               
               
               Conread position:2-256
               
               
               Cow position:chr9:174449-174706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 19

               
               
               Conread position:2-256
               
               
               Cow position:chr9:382569-382822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:197
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):35, 86

               
               
               Conread position:2-256
               
               
               Cow position:chr9:777486-777746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 191

               
               
               Conread position:2-256
               
               
               Cow position:chr9:873977-873723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 145

               
               
               Conread position:2-256
               
               
               Cow position:chr9:1099919-1099661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr9:1838275-1838022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 47

               
               
               Conread position:2-256
               
               
               Cow position:chr9:2208349-2208602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 72

               
               
               Conread position:2-256
               
               
               Cow position:chr9:2214464-2214206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:193
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr9:2527601-2527354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:179
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):211, 34

               
               
               Conread position:2-256
               
               
               Cow position:chr9:2834676-2834933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:193
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):125, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr9:2857168-2856911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 162

               
               
               Conread position:2-256
               
               
               Cow position:chr9:2873800-2873541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 190

               
               
               Conread position:2-256
               
               
               Cow position:chr9:3052590-3052332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 187

               
               
               Conread position:2-256
               
               
               Cow position:chr9:3756514-3756764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:192
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):33, 119

               
               
               Conread position:2-256
               
               
               Cow position:chr9:3997445-3997693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:198
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):35, 96

               
               
               Conread position:2-256
               
               
               Cow position:chr9:4940174-4940432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr9:5007290-5007040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:199
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):124, 22

               
               
               Conread position:2-256
               
               
               Cow position:chr9:5430791-5430533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr9:5452315-5452573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr9:5628144-5627886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:191
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr9:6252889-6252635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 173

               
               
               Conread position:2-256
               
               
               Cow position:chr9:6365701-6365444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 139

               
               
               Conread position:2-256
               
               
               Cow position:chr9:6707593-6707851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:193
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr9:7006065-7005808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):124, 183

               
               
               Conread position:2-256
               
               
               Cow position:chr9:7058726-7058983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 183

               
               
               Conread position:2-256
               
               
               Cow position:chr9:7103906-7104164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:195
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr9:8281945-8282201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 205

               
               
               Conread position:2-256
               
               
               Cow position:chr9:9016399-9016141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr9:9210468-9210210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr9:12285383-12285640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 184

               
               
               Conread position:2-256
               
               
               Cow position:chr9:13187529-13187271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr9:13312882-13312630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:191
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):34, 96

               
               
               Conread position:2-256
               
               
               Cow position:chr9:14045990-14045740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:194
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):35, 119

               
               
               Conread position:2-256
               
               
               Cow position:chr9:16178909-16178654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 175

               
               
               Conread position:2-256
               
               
               Cow position:chr9:17061033-17061290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 183

               
               
               Conread position:2-256
               
               
               Cow position:chr9:17302655-17302906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:201
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):35, 66

               
               
               Conread position:2-256
               
               
               Cow position:chr9:18506499-18506757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 187

               
               
               Conread position:2-256
               
               
               Cow position:chr9:18710817-18710560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 110

               
               
               Conread position:2-256
               
               
               Cow position:chr9:18831057-18830805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:198
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):35, 100

               
               
               Conread position:2-256
               
               
               Cow position:chr9:19545835-19545578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 174

               
               
               Conread position:2-256
               
               
               Cow position:chr9:22570429-22570172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 174

               
               
               Conread position:2-256
               
               
               Cow position:chr9:22803326-22803585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr9:24917963-24918221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 187

               
               
               Conread position:2-256
               
               
               Cow position:chr9:27038438-27038174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:205
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):35, 154

               
               
               Conread position:2-256
               
               
               Cow position:chr9:28025145-28024886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr9:28657732-28657985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:199
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):35, 172

               
               
               Conread position:2-256
               
               
               Cow position:chr9:28681525-28681267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr9:28785667-28785411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 64

               
               
               Conread position:2-256
               
               
               Cow position:chr9:30281695-30281949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:195
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):21, 65

               
               
               Conread position:2-256
               
               
               Cow position:chr9:31810902-31810644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr9:32972691-32972434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 83

               
               
               Conread position:2-256
               
               
               Cow position:chr9:33057107-33056850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr9:34059309-34059566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr9:34238434-34238692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr9:35624639-35624381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr9:36829727-36829985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr9:37158287-37158543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:192
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 130

               
               
               Conread position:2-256
               
               
               Cow position:chr9:37174080-37174338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 191

               
               
               Conread position:2-256
               
               
               Cow position:chr9:37253729-37253471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr9:38634104-38633847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:195
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):35, 172

               
               
               Conread position:2-256
               
               
               Cow position:chr9:39303228-39303486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr9:41312716-41312974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr9:42570540-42570281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 185

               
               
               Conread position:2-256
               
               
               Cow position:chr9:42868547-42868806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr9:43494373-43494115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr9:43496459-43496201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr9:44168916-44168656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:203
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):34, 93

               
               
               Conread position:2-256
               
               
               Cow position:chr9:44202755-44203013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr9:45792173-45791915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr9:45876843-45876585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr9:46627636-46627378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr9:46667473-46667731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr9:47045272-47045014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:189
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr9:47171378-47171119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 187

               
               
               Conread position:2-256
               
               
               Cow position:chr9:48794967-48795225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr9:50840757-50840499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr9:51178343-51178602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:2-256
               
               
               Cow position:chr9:52526476-52526218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr9:54413285-54413542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 89

               
               
               Conread position:2-256
               
               
               Cow position:chr9:54459177-54459435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr9:59479532-59479781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:197
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):35, 157

               
               
               Conread position:2-256
               
               
               Cow position:chr9:59495858-59496116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr9:60409727-60409469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr9:62817896-62818154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chr9:63563745-63563481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 181

               
               
               Conread position:2-256
               
               
               Cow position:chr9:64011904-64012162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chr9:64562528-64562278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:198
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):35, 98

               
               
               Conread position:2-257
               
               
               Cow position:chr9:1259761-1259498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:203
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):28, 194

               
               
               Conread position:2-257
               
               
               Cow position:chr9:31417191-31417450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-265
               
               
               Cow position:chr9:1997976-1998237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 83

               
               
               Conread position:2-265
               
               
               Cow position:chr9:3061912-3061646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 257

               
               
               Conread position:2-265
               
               
               Cow position:chr9:3806919-3806655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-265
               
               
               Cow position:chr9:19155967-19156233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 187

               
               
               Conread position:2-265
               
               
               Cow position:chr9:20941803-20941531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 153

               
               
               Conread position:2-265
               
               
               Cow position:chr9:21412628-21412371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:191
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):36, 155

               
               
               Conread position:2-270
               
               
               Cow position:chr9:13220863-13220593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 193

               
               
               Conread position:2-270
               
               
               Cow position:chr9:35565214-35565489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-272
               
               
               Cow position:chr9:53777017-53776741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 103

               
               
               Conread position:2-294
               
               
               Cow position:chr9:55031829-55031537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 110

               
               
               Conread position:2-303
               
               
               Cow position:chr9:4673380-4673075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:3-161
               
               
               Cow position:chr9:17993030-17993186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:131
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):34, 118

               
               
               Conread position:3-188
               
               
               Cow position:chr9:25974666-25974846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):32, 45

               
               
               Conread position:3-188
               
               
               Cow position:chr9:33999556-33999374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:153
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):34, 130

               
               
               Conread position:3-238
               
               
               Cow position:chr9:44821208-44820971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:185
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):34, 186

               
               
               Conread position:3-253
               
               
               Cow position:chr9:4553120-4552878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 138

               
               
               Conread position:3-253
               
               
               Cow position:chr9:34945690-34945944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:3-256
               
               
               Cow position:chr9:1850328-1850576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:182
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):34, 114

               
               
               Conread position:3-256
               
               
               Cow position:chr9:1983695-1983442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 184

               
               
               Conread position:3-256
               
               
               Cow position:chr9:4647319-4647574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:176
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):34, 184

               
               
               Conread position:3-256
               
               
               Cow position:chr9:5058756-5059015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:193
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):32, 145

               
               
               Conread position:3-256
               
               
               Cow position:chr9:13181233-13180987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:198
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):32, 59

               
               
               Conread position:3-256
               
               
               Cow position:chr9:22442804-22442558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:183
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):34, 114

               
               
               Conread position:3-256
               
               
               Cow position:chr9:52001786-52002044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 185

               
               
               Conread position:3-256
               
               
               Cow position:chr9:52408000-52408263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 193

               
               
               Conread position:3-257
               
               
               Cow position:chr9:25547830-25548088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:3-257
               
               
               Cow position:chr9:55796782-55797038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:189
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):40, 190

               
               
               Conread position:3-259
               
               
               Cow position:chr9:62669230-62669487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:178
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):34, 146

               
               
               Conread position:3-260
               
               
               Cow position:chr9:34690206-34690467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 187

               
               
               Conread position:3-261
               
               
               Cow position:chr9:26087681-26087940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):34, 55

               
               
               Conread position:3-265
               
               
               Cow position:chr9:9491632-9491883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:200
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):34, 59

               
               
               Conread position:3-265
               
               
               Cow position:chr9:36844616-36844871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:193
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):34, 126

               
               
               Conread position:3-265
               
               
               Cow position:chr9:49981820-49981563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:203
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):33, 59

               
               
               Conread position:3-265
               
               
               Cow position:chr9:51010866-51010620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:194
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):34, 53

               
               
               Conread position:3-270
               
               
               Cow position:chr9:30401606-30401336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 256

               
               
               Conread position:4-187
               
               
               Cow position:chr9:62400999-62401183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:146
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):35, 108

               
               
               Conread position:4-256
               
               
               Cow position:chr9:1070961-1071217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 187

               
               
               Conread position:4-256
               
               
               Cow position:chr9:17018077-17017821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 187

               
               
               Conread position:8-252
               
               
               Cow position:chr9:18110018-18109773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:180
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):29, 105

               
               
               Conread position:8-256
               
               
               Cow position:chr9:18539976-18539729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:193
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 168

               
               
               Conread position:8-256
               
               
               Cow position:chr9:27781593-27781845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 183

               
               
               Conread position:8-275
               
               
               Cow position:chr9:15052570-15052843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 183

               
               
               Conread position:9-184
               
               
               Cow position:chr9:50900318-50900495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:9-233
               
               
               Cow position:chr9:59539224-59539002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:172
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):28, 15

               
               
               Conread position:9-256
               
               
               Cow position:chr9:790987-791245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:194
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):30, 159

               
               
               Conread position:9-256
               
               
               Cow position:chr9:1519900-1519658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:188
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):182, 23

               
               
               Conread position:9-256
               
               
               Cow position:chr9:13472259-13472496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:185
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):28, 53

               
               
               Conread position:9-256
               
               
               Cow position:chr9:29193252-29193501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:9-256
               
               
               Cow position:chr9:64049579-64049341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):117, 21

               
               
               Conread position:9-270
               
               
               Cow position:chr9:59197168-59196910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 82

               
               
               Conread position:10-256
               
               
               Cow position:chr9:4127639-4127875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):27, 102

               
               
               Conread position:11-256
               
               
               Cow position:chr9:43225389-43225634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):10, 110

               
               
               Conread position:12-256
               
               
               Cow position:chr9:34900789-34900534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:192
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):114, 34

               
               
               Conread position:14-256
               
               
               Cow position:chr9:30675387-30675142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:193
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):23, 94

               
               
               Conread position:15-253
               
               
               Cow position:chr9:9199402-9199166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:170
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):22, 81

               
               
               Conread position:15-256
               
               
               Cow position:chr9:5328055-5328285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:185
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):22, 106

               
               
               Conread position:15-256
               
               
               Cow position:chr9:9957874-9958117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:179
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):22, 43

               
               
               Conread position:15-265
               
               
               Cow position:chr9:19079176-19078924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):22, 150

               
               
               Conread position:16-257
               
               
               Cow position:chr9:37168777-37168538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:182
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):21, 143

               
               
               Conread position:17-253
               
               
               Cow position:chr9:62763996-62764237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):22, 154

               
               
               Conread position:17-256
               
               
               Cow position:chr9:22319106-22319348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:184
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):20, 65

               
               
               Conread position:18-251
               
               
               Cow position:chr9:18071790-18071555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:173
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):19, 94

               
               
               Conread position:18-253
               
               
               Cow position:chr9:33845327-33845088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:165
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):19, 145

               
               
               Conread position:18-253
               
               
               Cow position:chr9:34917926-34917689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:192
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 119

               
               
               Conread position:18-256
               
               
               Cow position:chr9:5887080-5887324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:185
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):18, 109

               
               
               Conread position:18-256
               
               
               Cow position:chr9:59540742-59540516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:170
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):19, 38

               
               
               Conread position:22-270
               
               
               Cow position:chr9:56861865-56862111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):15, 40

               
               
               Conread position:26-256
               
               
               Cow position:chr9:9872240-9872006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:184
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):11, 164

               
               
               Conread position:27-184
               
               
               Cow position:chr9:55621326-55621479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:124
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):10, 68

               
               
               Conread position:31-256
               
               
               Cow position:chr9:2864272-2864498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:155
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):95, 125

               
               
               Conread position:32-253
               
               
               Cow position:chr9:13493040-13492826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:165
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):5, 89

               
               
               Conread position:43-265
               
               
               Cow position:chr9:10939997-10939783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):149, 77

               
               
               Conread position:44-251
               
               
               Cow position:chr9:34460321-34460531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):83, 146

               
               
               Conread position:44-256
               
               
               Cow position:chr9:4191563-4191348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:168
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):83, 146

               
               
               Conread position:49-256
               
               
               Cow position:chr9:9021328-9021538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):78, 168

               
               
               Conread position:49-256
               
               
               Cow position:chr9:14003306-14003104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:164
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):163, 67

               
               
               Conread position:51-256
               
               
               Cow position:chr9:26077602-26077799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):75, 61

               
               
               Conread position:54-252
               
               
               Cow position:chr9:2676959-2677153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:144
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):159, 72

               
               
               Conread position:59-265
               
               
               Cow position:chr9:9261638-9261433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:158
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):67, 56

               
               
               Conread position:63-187
               
               
               Cow position:chr9:14386840-14386715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:102
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:65-250
               
               
               Cow position:chr9:17588398-17588210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):147, 123

               
               
               Conread position:65-256
               
               
               Cow position:chr9:25596912-25596719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:147
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):62, 32

               
               
               Conread position:67-210
               
               
               Cow position:chr9:15214793-15214654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:114
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):60, 11

               
               
               Conread position:68-256
               
               
               Cow position:chr9:50003981-50003790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):59, 122

               
               
               Conread position:70-256
               
               
               Cow position:chr9:15802655-15802466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):57, 119

               
               
               Conread position:73-256
               
               
               Cow position:chr9:59167469-59167655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:148
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):53, 103

               
               
               Conread position:84-265
               
               
               Cow position:chr9:2484381-2484558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:136
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):105, 47

               
               
               Conread position:89-256
               
               
               Cow position:chr9:38679353-38679185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):37, 105

               
               
               Conread position:90-256
               
               
               Cow position:chr9:37182098-37181929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:129
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:96-275
               
               
               Cow position:chr9:127645-127814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):30, 94

               
               
               Conread position:1-183
               
               
               Cow position:chrX:35240106-35239922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:150
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:1-189
               
               
               Cow position:chrX:22601176-22601365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:137
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:1-256
               
               
               Cow position:chrX:2649117-2649375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):78, 9

               
               
               Conread position:1-256
               
               
               Cow position:chrX:14125010-14125269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:1-256
               
               
               Cow position:chrX:19608910-19608651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 190

               
               
               Conread position:1-256
               
               
               Cow position:chrX:23341757-23342016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:1-256
               
               
               Cow position:chrX:24292430-24292688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):125, 230

               
               
               Conread position:1-256
               
               
               Cow position:chrX:24483133-24483387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:189
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):43, 58

               
               
               Conread position:1-256
               
               
               Cow position:chrX:27977600-27977857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 137

               
               
               Conread position:1-256
               
               
               Cow position:chrX:29880046-29880303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 157

               
               
               Conread position:1-256
               
               
               Cow position:chrX:30172472-30172731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:192
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:1-265
               
               
               Cow position:chrX:21833120-21832853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:196
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):27, 139

               
               
               Conread position:1-271
               
               
               Cow position:chrX:14598080-14597809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 190

               
               
               Conread position:2-184
               
               
               Cow position:chrX:39702087-39701914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):33, 88

               
               
               Conread position:2-184
               
               
               Cow position:chrX:41879683-41879874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:157
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):35, 138

               
               
               Conread position:2-185
               
               
               Cow position:chrX:5124126-5124311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:149
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-189
               
               
               Cow position:chrX:15113905-15113716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:151
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-190
               
               
               Cow position:chrX:37134400-37134590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:152
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-210
               
               
               Cow position:chrX:21255012-21254806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:168
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 187

               
               
               Conread position:2-210
               
               
               Cow position:chrX:38330615-38330411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:163
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):35, 59

               
               
               Conread position:2-236
               
               
               Cow position:chrX:2293367-2293605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:188
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-250
               
               
               Cow position:chrX:3652900-3652654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:191
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):10, 83

               
               
               Conread position:2-250
               
               
               Cow position:chrX:18950503-18950755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 184

               
               
               Conread position:2-252
               
               
               Cow position:chrX:4622720-4622974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:191
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-252
               
               
               Cow position:chrX:4905757-4906008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 41

               
               
               Conread position:2-252
               
               
               Cow position:chrX:9095875-9095622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:185
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):35, 47

               
               
               Conread position:2-252
               
               
               Cow position:chrX:12178912-12178653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:193
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-252
               
               
               Cow position:chrX:20356762-20357020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:2-252
               
               
               Cow position:chrX:32584698-32584951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 187

               
               
               Conread position:2-253
               
               
               Cow position:chrX:8590815-8590558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 192

               
               
               Conread position:2-253
               
               
               Cow position:chrX:10445182-10445437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 187

               
               
               Conread position:2-253
               
               
               Cow position:chrX:16526023-16525768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:2-253
               
               
               Cow position:chrX:17782733-17782478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 187

               
               
               Conread position:2-253
               
               
               Cow position:chrX:20953766-20953511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-253
               
               
               Cow position:chrX:24467891-24468145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:194
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):35, 96

               
               
               Conread position:2-253
               
               
               Cow position:chrX:29942389-29942137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:180
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):35, 49

               
               
               Conread position:2-253
               
               
               Cow position:chrX:40225007-40225256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 125

               
               
               Conread position:2-253
               
               
               Cow position:chrX:46296894-46296640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:197
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):35, 110

               
               
               Conread position:2-256
               
               
               Cow position:chrX:671760-672018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 189

               
               
               Conread position:2-256
               
               
               Cow position:chrX:1550198-1549940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 187

               
               
               Conread position:2-256
               
               
               Cow position:chrX:2103638-2103380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chrX:2479391-2479653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:192
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chrX:2500398-2500655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:191
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):118, 188

               
               
               Conread position:2-256
               
               
               Cow position:chrX:2579652-2579394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chrX:3081898-3082158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:195
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):35, 96

               
               
               Conread position:2-256
               
               
               Cow position:chrX:3361054-3360796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chrX:3417903-3418161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chrX:3464844-3465099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:184
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):35, 68

               
               
               Conread position:2-256
               
               
               Cow position:chrX:4342984-4342726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chrX:5248618-5248365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:202
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):34, 12

               
               
               Conread position:2-256
               
               
               Cow position:chrX:5320484-5320739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:189
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):36, 88

               
               
               Conread position:2-256
               
               
               Cow position:chrX:5332200-5332456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:189
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):35, 193

               
               
               Conread position:2-256
               
               
               Cow position:chrX:5334582-5334838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:189
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):35, 193

               
               
               Conread position:2-256
               
               
               Cow position:chrX:5354070-5354325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 88

               
               
               Conread position:2-256
               
               
               Cow position:chrX:5361243-5360985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chrX:5427493-5427246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:190
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chrX:5646871-5647129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chrX:5866379-5866121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chrX:6372413-6372155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chrX:6453930-6453672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 207

               
               
               Conread position:2-256
               
               
               Cow position:chrX:6870331-6870588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 247

               
               
               Conread position:2-256
               
               
               Cow position:chrX:7096691-7096434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chrX:7485040-7484782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chrX:7755138-7754881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 47

               
               
               Conread position:2-256
               
               
               Cow position:chrX:8641021-8640763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:194
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):35, 191

               
               
               Conread position:2-256
               
               
               Cow position:chrX:9011564-9011306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 188

               
               
               Conread position:2-256
               
               
               Cow position:chrX:9128289-9128030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:196
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):35, 190

               
               
               Conread position:2-256
               
               
               Cow position:chrX:9169381-9169630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:200
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):35, 97

               
               
               Conread position:2-256
               
               
               Cow position:chrX:9642199-9642457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chrX:9899110-9899361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 79

               
               
               Conread position:2-256
               
               
               Cow position:chrX:10059698-10059441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chrX:10528553-10528809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:191
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 89

               
               
               Conread position:2-256
               
               
               Cow position:chrX:11146100-11146359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chrX:11409101-11409359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chrX:11461763-11462018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:198
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):35, 115

               
               
               Conread position:2-256
               
               
               Cow position:chrX:11499543-11499799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 215

               
               
               Conread position:2-256
               
               
               Cow position:chrX:11976213-11976470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 194

               
               
               Conread position:2-256
               
               
               Cow position:chrX:12145335-12145074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 191

               
               
               Conread position:2-256
               
               
               Cow position:chrX:12307529-12307787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 191

               
               
               Conread position:2-256
               
               
               Cow position:chrX:12346129-12345871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chrX:12360121-12359863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:198
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chrX:13206185-13205930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 48

               
               
               Conread position:2-256
               
               
               Cow position:chrX:13928509-13928767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chrX:14462547-14462295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:191
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):125, 169

               
               
               Conread position:2-256
               
               
               Cow position:chrX:14801586-14801843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 188

               
               
               Conread position:2-256
               
               
               Cow position:chrX:15039836-15040087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:191
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):35, 103

               
               
               Conread position:2-256
               
               
               Cow position:chrX:15121928-15122185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):35, 170

               
               
               Conread position:2-256
               
               
               Cow position:chrX:15175319-15175574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:188
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):34, 76

               
               
               Conread position:2-256
               
               
               Cow position:chrX:15621299-15621556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 47

               
               
               Conread position:2-256
               
               
               Cow position:chrX:15977720-15977978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:197
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):35, 185

               
               
               Conread position:2-256
               
               
               Cow position:chrX:16085425-16085683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 188

               
               
               Conread position:2-256
               
               
               Cow position:chrX:16086890-16087148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:192
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chrX:16278885-16278631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 119

               
               
               Conread position:2-256
               
               
               Cow position:chrX:16359774-16360032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chrX:16465534-16465282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 130

               
               
               Conread position:2-256
               
               
               Cow position:chrX:16702904-16702646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chrX:16711189-16710931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chrX:16782513-16782257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 185

               
               
               Conread position:2-256
               
               
               Cow position:chrX:16808581-16808839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chrX:17054802-17054543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:200
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):35, 192

               
               
               Conread position:2-256
               
               
               Cow position:chrX:17290413-17290158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 166

               
               
               Conread position:2-256
               
               
               Cow position:chrX:17994692-17994437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chrX:18023759-18024017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chrX:18193923-18193665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chrX:18656572-18656830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 187

               
               
               Conread position:2-256
               
               
               Cow position:chrX:19399011-19398753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chrX:19473926-19474173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):125, 45

               
               
               Conread position:2-256
               
               
               Cow position:chrX:20020812-20020556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:192
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chrX:21226710-21226454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 130

               
               
               Conread position:2-256
               
               
               Cow position:chrX:21343628-21343370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chrX:21415100-21414842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:190
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chrX:21582676-21582418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 191

               
               
               Conread position:2-256
               
               
               Cow position:chrX:21685852-21685594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chrX:21768037-21767775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:202
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):35, 193

               
               
               Conread position:2-256
               
               
               Cow position:chrX:21793824-21793565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 189

               
               
               Conread position:2-256
               
               
               Cow position:chrX:22077109-22077365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chrX:22118261-22118519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:2-256
               
               
               Cow position:chrX:22493264-22493009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 184

               
               
               Conread position:2-256
               
               
               Cow position:chrX:22538800-22539058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chrX:22564454-22564708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):35, 50

               
               
               Conread position:2-256
               
               
               Cow position:chrX:22579154-22579412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:197
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):27, 192

               
               
               Conread position:2-256
               
               
               Cow position:chrX:22612636-22612378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chrX:22887893-22887637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 80

               
               
               Conread position:2-256
               
               
               Cow position:chrX:23038752-23039009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:190
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):36, 95

               
               
               Conread position:2-256
               
               
               Cow position:chrX:23280257-23280002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 187

               
               
               Conread position:2-256
               
               
               Cow position:chrX:23387305-23387558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 172

               
               
               Conread position:2-256
               
               
               Cow position:chrX:23395840-23395582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 187

               
               
               Conread position:2-256
               
               
               Cow position:chrX:23452212-23452472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:197
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):35, 174

               
               
               Conread position:2-256
               
               
               Cow position:chrX:23986483-23986225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chrX:24280153-24279892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chrX:24346282-24346024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:193
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chrX:24413263-24413002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:194
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):35, 191

               
               
               Conread position:2-256
               
               
               Cow position:chrX:24588503-24588759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 60

               
               
               Conread position:2-256
               
               
               Cow position:chrX:25289446-25289704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chrX:26230525-26230783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chrX:26275371-26275114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:198
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):35, 76

               
               
               Conread position:2-256
               
               
               Cow position:chrX:26531206-26530948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 191

               
               
               Conread position:2-256
               
               
               Cow position:chrX:26618357-26618099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:190
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chrX:26760335-26760593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chrX:27305162-27304904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chrX:27318464-27318206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chrX:27754661-27754403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chrX:27758941-27758684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):125, 190

               
               
               Conread position:2-256
               
               
               Cow position:chrX:27983121-27983376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):34, 26

               
               
               Conread position:2-256
               
               
               Cow position:chrX:28058555-28058297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chrX:28503569-28503311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chrX:28518487-28518745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:196
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chrX:28647037-28647295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 106

               
               
               Conread position:2-256
               
               
               Cow position:chrX:29099650-29099394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 189

               
               
               Conread position:2-256
               
               
               Cow position:chrX:29225711-29225453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chrX:29759921-29759665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:191
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 204

               
               
               Conread position:2-256
               
               
               Cow position:chrX:29907969-29908227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:197
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chrX:29916112-29916371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 190

               
               
               Conread position:2-256
               
               
               Cow position:chrX:30053235-30053493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chrX:30060122-30059862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:2-256
               
               
               Cow position:chrX:30159758-30160014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 12

               
               
               Conread position:2-256
               
               
               Cow position:chrX:30164005-30164261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:194
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chrX:30165429-30165687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:188
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chrX:30180694-30180949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 22

               
               
               Conread position:2-256
               
               
               Cow position:chrX:30199759-30200017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chrX:30836620-30836362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chrX:30964753-30965011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chrX:31202074-31201816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 45

               
               
               Conread position:2-256
               
               
               Cow position:chrX:31495969-31495712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 103

               
               
               Conread position:2-256
               
               
               Cow position:chrX:31728696-31728442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 55

               
               
               Conread position:2-256
               
               
               Cow position:chrX:31978608-31978865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chrX:32063934-32064192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:198
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chrX:32643719-32643461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chrX:33685364-33685106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chrX:33763378-33763120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chrX:34094939-34094681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chrX:34761299-34761041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 191

               
               
               Conread position:2-256
               
               
               Cow position:chrX:36195325-36195071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):35, 76

               
               
               Conread position:2-256
               
               
               Cow position:chrX:36729617-36729359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chrX:37080285-37080539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 156

               
               
               Conread position:2-256
               
               
               Cow position:chrX:37404001-37404254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 119

               
               
               Conread position:2-256
               
               
               Cow position:chrX:37852369-37852113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-256
               
               
               Cow position:chrX:38150921-38150664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chrX:38231034-38231292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 189

               
               
               Conread position:2-256
               
               
               Cow position:chrX:39185406-39185148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chrX:39548632-39548374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-256
               
               
               Cow position:chrX:41156544-41156287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-256
               
               
               Cow position:chrX:41847297-41847553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 187

               
               
               Conread position:2-256
               
               
               Cow position:chrX:42733105-42732847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 189

               
               
               Conread position:2-257
               
               
               Cow position:chrX:2048345-2048087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-257
               
               
               Cow position:chrX:18244218-18243968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 125

               
               
               Conread position:2-257
               
               
               Cow position:chrX:24769624-24769882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 47

               
               
               Conread position:2-257
               
               
               Cow position:chrX:28588204-28587947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:199
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):35, 190

               
               
               Conread position:2-257
               
               
               Cow position:chrX:30455388-30455642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 190

               
               
               Conread position:2-257
               
               
               Cow position:chrX:39713784-39713525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-257
               
               
               Cow position:chrX:39730906-39731163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 66

               
               
               Conread position:2-258
               
               
               Cow position:chrX:29892320-29892059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 185

               
               
               Conread position:2-261
               
               
               Cow position:chrX:4767923-4767666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):35, 60

               
               
               Conread position:2-265
               
               
               Cow position:chrX:5289453-5289717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:204
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):35, 67

               
               
               Conread position:2-265
               
               
               Cow position:chrX:14782112-14782378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 257

               
               
               Conread position:2-265
               
               
               Cow position:chrX:18488481-18488747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-265
               
               
               Cow position:chrX:21389811-21389545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 257

               
               
               Conread position:2-265
               
               
               Cow position:chrX:23572583-23572851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 192

               
               
               Conread position:2-265
               
               
               Cow position:chrX:29912572-29912308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:192
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):35, 255

               
               
               Conread position:2-265
               
               
               Cow position:chrX:35533087-35532823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 88

               
               
               Conread position:2-265
               
               
               Cow position:chrX:38961617-38961883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 187

               
               
               Conread position:2-270
               
               
               Cow position:chrX:2559727-2559999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:2-270
               
               
               Cow position:chrX:3155353-3155621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):35, 7

               
               
               Conread position:2-270
               
               
               Cow position:chrX:3372620-3372893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 60

               
               
               Conread position:2-270
               
               
               Cow position:chrX:7551568-7551842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 184

               
               
               Conread position:2-270
               
               
               Cow position:chrX:14049961-14050234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 187

               
               
               Conread position:2-270
               
               
               Cow position:chrX:28633234-28633495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:202
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):35, 21

               
               
               Conread position:2-271
               
               
               Cow position:chrX:28605863-28606126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:194
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):189, 72

               
               
               Conread position:2-272
               
               
               Cow position:chrX:10866636-10866906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 98

               
               
               Conread position:2-272
               
               
               Cow position:chrX:22811123-22810845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-272
               
               
               Cow position:chrX:28624528-28624804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 88

               
               
               Conread position:2-275
               
               
               Cow position:chrX:26447312-26447047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:197
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):35, 66

               
               
               Conread position:2-275
               
               
               Cow position:chrX:29083300-29083019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:2-275
               
               
               Cow position:chrX:29849396-29849670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:214
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):35, 74

               
               
               Conread position:2-305
               
               
               Cow position:chrX:12651587-12651891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 189

               
               
               Conread position:2-333
               
               
               Cow position:chrX:5280621-5280950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 67

               
               
               Conread position:2-503
               
               
               Cow position:chrX:13031419-13031925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:513
               
               
               Alignm identity:209
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):38, 60

               
               
               Conread position:3-183
               
               
               Cow position:chrX:45400785-45400969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):26, 85

               
               
               Conread position:3-189
               
               
               Cow position:chrX:28156764-28156582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:148
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):34, 118

               
               
               Conread position:3-210
               
               
               Cow position:chrX:21662268-21662069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:164
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):34, 54

               
               
               Conread position:3-210
               
               
               Cow position:chrX:24317054-24316849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:169
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):33, 47

               
               
               Conread position:3-223
               
               
               Cow position:chrX:39939521-39939745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:164
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:3-253
               
               
               Cow position:chrX:1056154-1056409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 188

               
               
               Conread position:3-253
               
               
               Cow position:chrX:6279371-6279627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:196
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):35, 155

               
               
               Conread position:3-253
               
               
               Cow position:chrX:18455538-18455792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:190
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):34, 146

               
               
               Conread position:3-253
               
               
               Cow position:chrX:28557593-28557344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):34, 60

               
               
               Conread position:3-253
               
               
               Cow position:chrX:34221997-34221736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:202
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):34, 194

               
               
               Conread position:3-253
               
               
               Cow position:chrX:39697995-39697744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:191
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):32, 118

               
               
               Conread position:3-253
               
               
               Cow position:chrX:45373876-45374129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:195
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):44, 159

               
               
               Conread position:3-256
               
               
               Cow position:chrX:323146-322889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 183

               
               
               Conread position:3-256
               
               
               Cow position:chrX:2382700-2382441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:177
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:3-256
               
               
               Cow position:chrX:3582171-3581912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:175
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):35, 29

               
               
               Conread position:3-256
               
               
               Cow position:chrX:4407115-4406858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 190

               
               
               Conread position:3-256
               
               
               Cow position:chrX:6235624-6235872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:192
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):34, 44

               
               
               Conread position:3-256
               
               
               Cow position:chrX:6581167-6580910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:195
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):34, 187

               
               
               Conread position:3-256
               
               
               Cow position:chrX:21592523-21592268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 187

               
               
               Conread position:3-256
               
               
               Cow position:chrX:22838504-22838247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 188

               
               
               Conread position:3-256
               
               
               Cow position:chrX:28753104-28753361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 190

               
               
               Conread position:3-256
               
               
               Cow position:chrX:28879362-28879606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:192
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):30, 61

               
               
               Conread position:3-256
               
               
               Cow position:chrX:35609218-35608969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:186
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):34, 127

               
               
               Conread position:3-256
               
               
               Cow position:chrX:35937844-35938090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:188
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):40, 113

               
               
               Conread position:3-256
               
               
               Cow position:chrX:36535499-36535754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 188

               
               
               Conread position:3-256
               
               
               Cow position:chrX:38228084-38228341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:200
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):35, 191

               
               
               Conread position:3-256
               
               
               Cow position:chrX:40070379-40070628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:189
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):33, 116

               
               
               Conread position:3-256
               
               
               Cow position:chrX:41791483-41791744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:3-256
               
               
               Cow position:chrX:42222541-42222794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 140

               
               
               Conread position:3-257
               
               
               Cow position:chrX:20675100-20674842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 187

               
               
               Conread position:3-257
               
               
               Cow position:chrX:23221811-23222057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 55

               
               
               Conread position:3-257
               
               
               Cow position:chrX:28133329-28133074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:192
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):34, 94

               
               
               Conread position:3-265
               
               
               Cow position:chrX:38852393-38852130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 254

               
               
               Conread position:3-266
               
               
               Cow position:chrX:41733958-41734217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:190
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):34, 96

               
               
               Conread position:3-272
               
               
               Cow position:chrX:36692062-36691794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):32, 69

               
               
               Conread position:4-253
               
               
               Cow position:chrX:29288224-29287976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 59

               
               
               Conread position:4-256
               
               
               Cow position:chrX:8482678-8482423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 186

               
               
               Conread position:4-270
               
               
               Cow position:chrX:15140305-15140571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 127

               
               
               Conread position:4-272
               
               
               Cow position:chrX:30136638-30136909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):122, 74

               
               
               Conread position:5-253
               
               
               Cow position:chrX:41884949-41885199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:188
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):32, 21

               
               
               Conread position:5-256
               
               
               Cow position:chrX:7120837-7120582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 185

               
               
               Conread position:6-271
               
               
               Cow position:chrX:11744496-11744233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):29, 110

               
               
               Conread position:8-256
               
               
               Cow position:chrX:8434975-8435224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):29, 162

               
               
               Conread position:8-256
               
               
               Cow position:chrX:16040452-16040704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 185

               
               
               Conread position:8-256
               
               
               Cow position:chrX:17663689-17663939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:190
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:8-256
               
               
               Cow position:chrX:39560432-39560684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:187
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:9-189
               
               
               Cow position:chrX:45042657-45042472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:9-253
               
               
               Cow position:chrX:22819304-22819056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 181

               
               
               Conread position:9-256
               
               
               Cow position:chrX:12310163-12310410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 153

               
               
               Conread position:9-256
               
               
               Cow position:chrX:13406060-13406311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:190
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:9-256
               
               
               Cow position:chrX:17891772-17891521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:189
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):28, 149

               
               
               Conread position:9-256
               
               
               Cow position:chrX:22870045-22869794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:190
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:9-256
               
               
               Cow position:chrX:35024286-35024044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:192
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):26, 72

               
               
               Conread position:9-256
               
               
               Cow position:chrX:40184299-40184048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:191
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):30, 182

               
               
               Conread position:9-265
               
               
               Cow position:chrX:13178382-13178639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):28, 107

               
               
               Conread position:9-274
               
               
               Cow position:chrX:20999051-20999310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:186
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):20, 66

               
               
               Conread position:10-265
               
               
               Cow position:chrX:25817596-25817850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 124

               
               
               Conread position:11-253
               
               
               Cow position:chrX:3144853-3144608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):26, 241

               
               
               Conread position:13-252
               
               
               Cow position:chrX:29790597-29790836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:177
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):150, 52

               
               
               Conread position:13-256
               
               
               Cow position:chrX:9763849-9764096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 178

               
               
               Conread position:13-256
               
               
               Cow position:chrX:16803645-16803892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 177

               
               
               Conread position:13-256
               
               
               Cow position:chrX:34442220-34442453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 114

               
               
               Conread position:14-253
               
               
               Cow position:chrX:25573573-25573331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:184
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):23, 177

               
               
               Conread position:15-187
               
               
               Cow position:chrX:21063692-21063519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:145
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):111, 142

               
               
               Conread position:15-187
               
               
               Cow position:chrX:23415475-23415649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:142
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:15-256
               
               
               Cow position:chrX:20792356-20792114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):112, 22

               
               
               Conread position:15-256
               
               
               Cow position:chrX:26755422-26755664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):22, 80

               
               
               Conread position:15-256
               
               
               Cow position:chrX:27450829-27451070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:177
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):22, 137

               
               
               Conread position:15-256
               
               
               Cow position:chrX:29700723-29700966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:187
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 178

               
               
               Conread position:15-256
               
               
               Cow position:chrX:30089826-30090067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:178
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):22, 130

               
               
               Conread position:15-256
               
               
               Cow position:chrX:33803775-33804011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):22, 143

               
               
               Conread position:15-257
               
               
               Cow position:chrX:40693509-40693758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):21, 154

               
               
               Conread position:17-253
               
               
               Cow position:chrX:25282275-25282515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):20, 191

               
               
               Conread position:17-256
               
               
               Cow position:chrX:24309882-24310124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:164
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):18, 134

               
               
               Conread position:18-152
               
               
               Cow position:chrX:11855382-11855246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:120
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:18-253
               
               
               Cow position:chrX:6406571-6406334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:184
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 178

               
               
               Conread position:18-256
               
               
               Cow position:chrX:24447170-24446929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):110, 172

               
               
               Conread position:18-256
               
               
               Cow position:chrX:44193223-44193461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:190
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):19, 103

               
               
               Conread position:19-256
               
               
               Cow position:chrX:47000437-47000678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):17, 140

               
               
               Conread position:20-256
               
               
               Cow position:chrX:27071060-27070822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:164
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):18, 70

               
               
               Conread position:23-256
               
               
               Cow position:chrX:32329420-32329184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:183
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):14, 94

               
               
               Conread position:26-253
               
               
               Cow position:chrX:5375068-5375299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:26-256
               
               
               Cow position:chrX:7572598-7572366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:185
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):100, 8

               
               
               Conread position:27-252
               
               
               Cow position:chrX:21818262-21818476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):10, 29

               
               
               Conread position:28-256
               
               
               Cow position:chrX:26442042-26442275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):50, 34

               
               
               Conread position:28-275
               
               
               Cow position:chrX:23134795-23134544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):87, 20

               
               
               Conread position:38-256
               
               
               Cow position:chrX:17229160-17228947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):103, 115

               
               
               Conread position:42-256
               
               
               Cow position:chrX:40827919-40828131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:165
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):123, 84

               
               
               Conread position:47-256
               
               
               Cow position:chrX:24321440-24321653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):80, 144

               
               
               Conread position:47-257
               
               
               Cow position:chrX:2146160-2145951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):134, 109

               
               
               Conread position:51-252
               
               
               Cow position:chrX:6854540-6854734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):75, 27

               
               
               Conread position:51-256
               
               
               Cow position:chrX:29930209-29930417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):76, 139

               
               
               Conread position:54-252
               
               
               Cow position:chrX:32145075-32145276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:157
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:57-190
               
               
               Cow position:chrX:11074008-11074140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:106
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:59-256
               
               
               Cow position:chrX:12996735-12996935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:165
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):67, 127

               
               
               Conread position:65-256
               
               
               Cow position:chrX:20742022-20741828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):57, 124

               
               
               Conread position:65-256
               
               
               Cow position:chrX:24734836-24734639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):32, 101

               
               
               Conread position:65-256
               
               
               Cow position:chrX:30435448-30435643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:155
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):61, 126

               
               
               Conread position:66-256
               
               
               Cow position:chrX:10438739-10438930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):60, 23

               
               
               Conread position:67-256
               
               
               Cow position:chrX:9227735-9227927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:70-256
               
               
               Cow position:chrX:21750081-21750267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):56, 88

               
               
               Conread position:73-256
               
               
               Cow position:chrX:37815340-37815155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):23, 113

               
               
               Conread position:74-256
               
               
               Cow position:chrX:6655860-6656043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):53, 76

               
               
               Conread position:74-256
               
               
               Cow position:chrX:16854205-16854390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):52, 116

               
               
               Conread position:82-256
               
               
               Cow position:chrX:24928190-24928367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):45, 108

               
               
               Conread position:89-252
               
               
               Cow position:chrX:5294201-5294368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:91-257
               
               
               Cow position:chrX:22616224-22616397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:124
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:92-256
               
               
               Cow position:chrX:21892650-21892483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):35, 98

               
               
               Conread position:93-256
               
               
               Cow position:chrX:2932861-2933027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):34, 97

               
               
               Conread position:100-256
               
               
               Cow position:chrX:27595092-27595251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):27, 90

               
               
               Conread position:114-256
               
               
               Cow position:chrX:29170661-29170806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:114
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):13, 75