Cow genome map
| Conread name: | rplun0138_e5.y1 |
| Conread position: | 155-410 |
| Cow position: | chr1:74746209-74746455 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 167, 26 |
| Conread position: | 157-404 |
| Cow position: | chr1:57179883-57180133 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 40, 93 |
| Conread position: | 158-391 |
| Cow position: | chr1:68832801-68833039 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 176 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 158-398 |
| Cow position: | chr1:95549327-95549082 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 170 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 34, 167 |
| Conread position: | 159-410 |
| Cow position: | chr1:20062815-20062559 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 184 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 38, 70 |
| Conread position: | 160-397 |
| Cow position: | chr1:93189913-93190152 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 21, 102 |
| Conread position: | 160-410 |
| Cow position: | chr1:22159536-22159775 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 17, 12 |
| Conread position: | 162-406 |
| Cow position: | chr1:15748232-15747978 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 174 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 34, 183 |
| Conread position: | 176-410 |
| Cow position: | chr1:33990326-33990566 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 166 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 232-410 |
| Cow position: | chr1:40492740-40492558 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 130 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 151-407 |
| Cow position: | chr10:17323612-17323362 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 175 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 46, 115 |
| Conread position: | 157-410 |
| Cow position: | chr10:58047208-58047466 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 172 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 40, 19 |
| Conread position: | 159-409 |
| Cow position: | chr10:66707956-66707702 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 170 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 37, 14 |
| Conread position: | 160-409 |
| Cow position: | chr10:15486596-15486345 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 169 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 91, 139 |
| Conread position: | 1-407 |
| Cow position: | chr11:8723686-8723282 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 197, 25 |
| Conread position: | 78-410 |
| Cow position: | chr11:12060760-12060435 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 235 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 93, 18 |
| Conread position: | 136-410 |
| Cow position: | chr11:50551371-50551650 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 197 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 25, 195 |
| Conread position: | 147-397 |
| Cow position: | chr11:63572881-63573138 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 171 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 159-408 |
| Cow position: | chr11:16361873-16362128 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 158-410 |
| Cow position: | chr12:41478317-41478062 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 179 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 38, 19 |
| Conread position: | 213-408 |
| Cow position: | chr12:40354288-40354487 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 141 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 39, 43 |
| Conread position: | 176-410 |
| Cow position: | chr13:55313540-55313777 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 93, 130 |
| Conread position: | 163-409 |
| Cow position: | chr15:30525048-30525292 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 169 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 34, 92 |
| Conread position: | 179-390 |
| Cow position: | chr15:53690740-53690532 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 17, 12 |
| Conread position: | 253-410 |
| Cow position: | chr15:41787768-41787607 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 116 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 161-410 |
| Cow position: | chr16:26323787-26324036 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 168 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 36, 159 |
| Conread position: | 161-410 |
| Cow position: | chr16:29065881-29065635 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 35, 102 |
| Conread position: | 163-410 |
| Cow position: | chr16:6978454-6978687 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 106, 38 |
| Conread position: | 160-410 |
| Cow position: | chr17:31716413-31716669 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 159-410 |
| Cow position: | chr18:28997073-28997338 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 181 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 38, 24 |
| Conread position: | 179-410 |
| Cow position: | chr18:23624251-23624015 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 161 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 27, 130 |
| Conread position: | 162-397 |
| Cow position: | chr19:53124879-53125118 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 15, 10 |
| Conread position: | 153-392 |
| Cow position: | chr2:24690862-24691104 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 165 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 116, 11 |
| Conread position: | 159-388 |
| Cow position: | chr2:18498838-18499059 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 158 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 45, 60 |
| Conread position: | 160-404 |
| Cow position: | chr2:16825901-16825659 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 173 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 20, 12 |
| Conread position: | 160-410 |
| Cow position: | chr2:68194789-68195035 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 176 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 37, 166 |
| Conread position: | 158-409 |
| Cow position: | chr20:8747021-8746751 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 186 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 205-409 |
| Cow position: | chr20:7151248-7151044 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 151 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 64, 6 |
| Conread position: | 187-405 |
| Cow position: | chr21:18047055-18047274 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 82, 68 |
| Conread position: | 159-392 |
| Cow position: | chr22:20181812-20181579 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 161 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 37, 128 |
| Conread position: | 160-410 |
| Cow position: | chr22:27151454-27151211 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 36, 96 |
| Conread position: | 160-410 |
| Cow position: | chr23:27645902-27645643 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 184 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 20, 12 |
| Conread position: | 179-410 |
| Cow position: | chr23:22919010-22919240 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 167 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 18, 61 |
| Conread position: | 161-410 |
| Cow position: | chr24:30799407-30799665 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 176 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 23, 129 |
| Conread position: | 144-410 |
| Cow position: | chr26:11669771-11670031 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 189 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 53, 15 |
| Conread position: | 159-392 |
| Cow position: | chr26:14142447-14142685 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 28, 122 |
| Conread position: | 161-410 |
| Cow position: | chr28:29462197-29461940 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 84, 30 |
| Conread position: | 178-410 |
| Cow position: | chr28:6853995-6854222 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 164 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 19, 112 |
| Conread position: | 158-410 |
| Cow position: | chr29:16507164-16506921 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 38, 124 |
| Conread position: | 132-409 |
| Cow position: | chr3:77716210-77715923 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 191 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 23, 10 |
| Conread position: | 158-393 |
| Cow position: | chr3:42337839-42337595 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 172 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 14, 19 |
| Conread position: | 159-387 |
| Cow position: | chr3:74489361-74489595 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 155 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 160-410 |
| Cow position: | chr3:36548009-36547758 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 37, 28 |
| Conread position: | 178-392 |
| Cow position: | chr3:29503249-29503468 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 18, 133 |
| Conread position: | 196-410 |
| Cow position: | chr3:43868816-43868599 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 84, 196 |
| Conread position: | 228-410 |
| Cow position: | chr3:33215309-33215493 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 135 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 36, 101 |
| Conread position: | 155-403 |
| Cow position: | chr4:56529877-56529626 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 41, 105 |
| Conread position: | 158-410 |
| Cow position: | chr4:46877551-46877301 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 185 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 38, 67 |
| Conread position: | 182-410 |
| Cow position: | chr4:9580989-9580756 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 164 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 157-410 |
| Cow position: | chr5:21328952-21329205 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 5, 17 |
| Conread position: | 157-410 |
| Cow position: | chr5:55678134-55677880 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 40, 63 |
| Conread position: | 160-410 |
| Cow position: | chr5:13291667-13291920 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 11, 18 |
| Conread position: | 160-410 |
| Cow position: | chr5:40611230-40611485 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 36, 191 |
| Conread position: | 196-403 |
| Cow position: | chr5:37365588-37365793 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 73, 55 |
| Conread position: | 152-316 |
| Cow position: | chr6:19954739-19954571 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 121 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 156-409 |
| Cow position: | chr6:26440743-26440481 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 41, 101 |
| Conread position: | 158-392 |
| Cow position: | chr6:15496109-15495872 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 169 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 38, 99 |
| Conread position: | 158-410 |
| Cow position: | chr6:7543232-7542986 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 180 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 19, 15 |
| Conread position: | 162-396 |
| Cow position: | chr6:8594555-8594316 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 35, 185 |
| Conread position: | 176-410 |
| Cow position: | chr7:14254507-14254746 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 165 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 156-396 |
| Cow position: | chr8:24303558-24303795 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 166 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 40, 59 |
| Conread position: | 160-410 |
| Cow position: | chr8:50388729-50388984 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 177 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 20, 12 |
| Conread position: | 160-392 |
| Cow position: | chr9:62532286-62532516 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 109, 151 |
| Conread position: | 161-410 |
| Cow position: | chr9:12640264-12640508 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 108, 24 |
| Conread position: | 179-410 |
| Cow position: | chr9:25373946-25374184 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 164 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 156-410 |
| Cow position: | chrX:23894574-23894315 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 40, 91 |
| Conread position: | 182-410 |
| Cow position: | chrX:17252620-17252851 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 15, 136 |
| Conread position: | 197-392 |
| Cow position: | chrX:22900154-22900353 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 66, 8 |