Cow genome map

Conread name: rsag031_n10.y1

Conread position: 1-295
Cow position: chr1:52693689-52693382 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 210
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 35, 274

Conread position: 73-354
Cow position: chr1:35241572-35241857 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 199
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 34, 113

Conread position: 1-207
Cow position: chr10:31696544-31696325 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 160
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 21, 85

Conread position: 1-225
Cow position: chr10:25945315-25945556 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 168
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 28, 178

Conread position: 1-248
Cow position: chr10:7652912-7653172 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 189
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 28, 70

Conread position: 1-316
Cow position: chr10:39295603-39295282 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 227
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 29, 63

Conread position: 24-355
Cow position: chr10:4402480-4402818 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 235
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 88, 80

Conread position: 27-295
Cow position: chr10:2529771-2530046 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 199
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 77, 20

Conread position: 72-325
Cow position: chr10:38832539-38832807 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 183
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 34, 202

Conread position: 118-355
Cow position: chr10:39248607-39248370 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 179
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 55, 9

Conread position: 164-355
Cow position: chr10:69566002-69565815 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 135
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 34, 57

Conread position: 1-355
Cow position: chr11:22998303-22998669 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 254
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 22, 303

Conread position: 1-355
Cow position: chr11:56303216-56303561 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 260
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 28, 55

Conread position: 5-355
Cow position: chr11:72720039-72720401 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 240
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 21, 188

Conread position: 22-355
Cow position: chr11:49486328-49486671 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 237
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 51, 39

Conread position: 94-283
Cow position: chr11:60332685-60332495 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 135
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 105, 0

Conread position: 76-355
Cow position: chr12:13225338-13225627 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 197
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 36, 60

Conread position: 1-355
Cow position: chr13:46641484-46641851 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 255
Alignm E-value: 9e-36
Alignm gaps (pig, cow): 30, 267

Conread position: 101-355
Cow position: chr13:21277389-21277137 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 174
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 101, 73

Conread position: 107-301
Cow position: chr13:37636250-37636056 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 136
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 93, 25

Conread position: 68-355
Cow position: chr14:34193937-34193655 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 203
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 48, 134

Conread position: 75-263
Cow position: chr14:18880352-18880164 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 137
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 48, 69

Conread position: 188-355
Cow position: chr14:25132463-25132297 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 124
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 115, 15

Conread position: 3-251
Cow position: chr15:33784231-33784471 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 172
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 67, 27

Conread position: 24-279
Cow position: chr15:23103410-23103674 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 181
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 86, 39

Conread position: 71-281
Cow position: chr15:35159222-35159443 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 154
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 41, 0

Conread position: 76-281
Cow position: chr15:24963457-24963666 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 145
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 22, 156

Conread position: 101-355
Cow position: chr15:13896579-13896834 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 179
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 103, 214

Conread position: 1-355
Cow position: chr16:20722305-20722672 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 257
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 28, 66

Conread position: 1-355
Cow position: chr16:42244339-42244716 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 268
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 28, 65

Conread position: 27-305
Cow position: chr16:42347947-42347656 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 202
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 11, 122

Conread position: 76-280
Cow position: chr16:42133238-42133452 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 149
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 31, 187

Conread position: 118-355
Cow position: chr16:18247186-18246960 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 165
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 16, 33

Conread position: 1-258
Cow position: chr17:32161462-32161208 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 175
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 71, 49

Conread position: 1-296
Cow position: chr17:21183907-21183592 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 210
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 21, 202

Conread position: 4-271
Cow position: chr17:30770353-30770085 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 182
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 75, 26

Conread position: 29-355
Cow position: chr17:29830057-29830383 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 212
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 45, 36

Conread position: 1-277
Cow position: chr18:45629526-45629231 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 212
Alignm E-value: 8e-36
Alignm gaps (pig, cow): 27, 67

Conread position: 1-281
Cow position: chr18:158674-158388 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 193
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 29, 145

Conread position: 27-289
Cow position: chr18:37845127-37844864 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 186
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 20, 126

Conread position: 27-310
Cow position: chr18:23628773-23629055 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 188
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 170, 38

Conread position: 27-355
Cow position: chr18:49439995-49439657 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 232
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 82, 35

Conread position: 64-295
Cow position: chr18:14456407-14456640 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 182
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 13, 109

Conread position: 144-355
Cow position: chr18:10119294-10119498 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 155
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 164, 131

Conread position: 1-218
Cow position: chr19:19463063-19463287 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 161
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 41, 30

Conread position: 1-355
Cow position: chr19:40079119-40079470 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 252
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 22, 179

Conread position: 29-295
Cow position: chr19:36009287-36009547 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 185
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 171, 69

Conread position: 87-355
Cow position: chr19:36997623-36997359 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 189
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 117, 14

Conread position: 120-350
Cow position: chr19:35569103-35569333 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 159
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 80, 52

Conread position: 1-280
Cow position: chr2:72244599-72244305 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 217
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 22, 66

Conread position: 1-289
Cow position: chr2:53378036-53378335 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 210
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 44, 30

Conread position: 1-314
Cow position: chr2:869698-869385 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 206
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 108, 29

Conread position: 2-353
Cow position: chr2:4486404-4486041 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 255
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 24, 7

Conread position: 27-266
Cow position: chr2:39305804-39306040 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 172
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 170, 21

Conread position: 27-298
Cow position: chr2:42692219-42692497 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 192
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 80, 187

Conread position: 62-281
Cow position: chr2:43645685-43645903 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 152
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 10, 88

Conread position: 104-355
Cow position: chr2:14151893-14152143 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 184
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 57, 188

Conread position: 118-350
Cow position: chr2:64102597-64102366 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 168
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 84, 51

Conread position: 147-355
Cow position: chr2:15304495-15304701 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 150
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 55, 107

Conread position: 80-295
Cow position: chr20:6631688-6631896 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 152
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 133, 11

Conread position: 27-280
Cow position: chr22:28049766-28049515 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 177
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 194, 34

Conread position: 29-273
Cow position: chr22:44375978-44375730 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 168
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 43, 16

Conread position: 31-282
Cow position: chr22:12837846-12837584 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 189
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 32, 95

Conread position: 36-355
Cow position: chr22:27486466-27486784 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 216
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 31, 243

Conread position: 22-271
Cow position: chr23:1952406-1952668 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 185
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 56, 39

Conread position: 1-305
Cow position: chr24:23715929-23715621 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 220
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 21, 68

Conread position: 74-281
Cow position: chr24:5891772-5891558 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 155
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 33, 124

Conread position: 1-355
Cow position: chr25:15205807-15206161 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 246
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 21, 65

Conread position: 1-355
Cow position: chr25:17974222-17974572 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 237
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 38, 25

Conread position: 96-355
Cow position: chr25:24077028-24076764 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 179
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 106, 60

Conread position: 131-355
Cow position: chr25:17449753-17449540 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 163
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 73, 23

Conread position: 27-355
Cow position: chr26:11959966-11959636 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 236
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 34, 19

Conread position: 40-355
Cow position: chr26:8171227-8171535 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 225
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 9, 44

Conread position: 127-355
Cow position: chr26:21659483-21659708 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 162
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 12, 44

Conread position: 1-310
Cow position: chr27:12983465-12983148 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 206
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 28, 275

Conread position: 80-280
Cow position: chr27:11659446-11659248 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 143
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 44, 13

Conread position: 1-249
Cow position: chr28:23281581-23281319 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 189
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 22, 65

Conread position: 27-355
Cow position: chr28:27355773-27355440 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 221
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 75, 147

Conread position: 4-355
Cow position: chr29:19547250-19546894 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 225
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 60, 26

Conread position: 80-328
Cow position: chr29:31960237-31960487 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 162
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 113, 18

Conread position: 118-355
Cow position: chr29:19564750-19564512 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 166
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 81, 105

Conread position: 1-281
Cow position: chr3:66859389-66859685 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 204
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 28, 65

Conread position: 1-355
Cow position: chr3:18595629-18595996 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 259
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 17, 30

Conread position: 21-296
Cow position: chr3:17885318-17885608 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 197
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 52, 42

Conread position: 6-263
Cow position: chr4:42954667-42954938 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 183
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 23, 219

Conread position: 27-295
Cow position: chr4:38845256-38845537 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 197
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 39, 226

Conread position: 106-353
Cow position: chr4:22493572-22493812 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 174
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 79, 0

Conread position: 106-355
Cow position: chr4:22601083-22600834 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 177
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 108, 73

Conread position: 24-278
Cow position: chr5:21184641-21184375 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 183
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 47, 234

Conread position: 36-261
Cow position: chr6:22746368-22746602 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 167
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 71, 189

Conread position: 76-353
Cow position: chr6:31437019-31437299 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 197
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 27, 21

Conread position: 2-355
Cow position: chr7:22805177-22804823 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 237
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 27, 17

Conread position: 4-281
Cow position: chr7:48324130-48323846 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 197
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 26, 62

Conread position: 106-355
Cow position: chr7:7630397-7630156 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 171
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 225, 34

Conread position: 29-304
Cow position: chr8:36942045-36941755 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 201
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 39, 207

Conread position: 67-355
Cow position: chr8:13745859-13746148 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 185
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 71, 60

Conread position: 83-355
Cow position: chr8:21821775-21821507 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 187
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 30, 17

Conread position: 101-292
Cow position: chr8:28982212-28982022 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 138
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 46, 152

Conread position: 118-355
Cow position: chr8:37268941-37269178 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 165
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 189, 82

Conread position: 1-355
Cow position: chr9:49963552-49963187 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 249
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 63, 31

Conread position: 1-355
Cow position: chrX:38391155-38390800 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 250
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 71, 38

Conread position: 22-355
Cow position: chrX:20445514-20445174 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 239
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 35, 255

Conread position: 73-355
Cow position: chrX:29160560-29160846 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 206
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 36, 128

Conread position: 118-354
Cow position: chrX:6683884-6683647 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 172
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 80, 185

Conread position: 159-355
Cow position: chrX:25340983-25341185 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 140
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 125, 0