Cow genome map

Conread name: rsag15_d6.y1

Conread position: 3-439
Cow position: chr10:40623737-40624194 (view UCSC Genome Browser custom track)
Alignm length: 473
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 7

Conread position: 6-186
Cow position: chr10:28771080-28770900 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 132
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 88, 13

Conread position: 14-186
Cow position: chr10:3739301-3739462 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 128
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 9, 20

Conread position: 187-398
Cow position: chr10:21528391-21528597 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 155
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 123, 62

Conread position: 187-398
Cow position: chr10:21545763-21545969 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 155
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 123, 62

Conread position: 198-443
Cow position: chr10:27742098-27741855 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 187
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 149, 63

Conread position: 204-442
Cow position: chr10:32122676-32122436 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 196
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 143, 49

Conread position: 263-445
Cow position: chr10:36850932-36851118 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 139
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 43, 22

Conread position: 1-444
Cow position: chr11:47174568-47174109 (view UCSC Genome Browser custom track)
Alignm length: 473
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 9

Conread position: 95-445
Cow position: chr11:10132906-10133256 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 262
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 93, 183

Conread position: 202-361
Cow position: chr11:22728016-22728176 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 131
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 108, 53

Conread position: 263-445
Cow position: chr11:58109422-58109611 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 151
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 43, 22

Conread position: 297-445
Cow position: chr11:24247372-24247530 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 123
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 32, 0

Conread position: 93-445
Cow position: chr12:374565-374949 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 277
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 58, 180

Conread position: 99-445
Cow position: chr12:17361886-17361529 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 235
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 40, 93

Conread position: 265-445
Cow position: chr12:26723919-26724113 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 155
Alignm E-value: 9e-35
Alignm gaps (pig, cow): 82, 23

Conread position: 1-367
Cow position: chr13:12450087-12450467 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 161, 9

Conread position: 1-420
Cow position: chr13:51917397-51917829 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 9

Conread position: 1-434
Cow position: chr13:41263585-41263157 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 9

Conread position: 258-416
Cow position: chr13:21117262-21117103 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 127
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 52, 7

Conread position: 1-445
Cow position: chr14:13983391-13982962 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 254, 9

Conread position: 25-445
Cow position: chr14:4723943-4724367 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 293
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 163, 45

Conread position: 31-445
Cow position: chr14:22088022-22087595 (view UCSC Genome Browser custom track)
Alignm length: 447
Alignm identity: 310
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 137, 41

Conread position: 206-436
Cow position: chr14:16574114-16573888 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 172
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 104, 32

Conread position: 270-445
Cow position: chr14:16840471-16840653 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 145
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 41, 12

Conread position: 126-367
Cow position: chr15:32055537-32055783 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 200
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 7, 119

Conread position: 1-442
Cow position: chr16:27144045-27144472 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 309, 9

Conread position: 15-445
Cow position: chr16:27961567-27962034 (view UCSC Genome Browser custom track)
Alignm length: 475
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 18

Conread position: 35-445
Cow position: chr16:46530864-46530434 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 250

Conread position: 171-320
Cow position: chr16:10186162-10186015 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 116
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 125, 89

Conread position: 269-445
Cow position: chr16:24686516-24686703 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 148
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 28, 16

Conread position: 83-359
Cow position: chr17:24603995-24603706 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 215
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 104, 193

Conread position: 187-398
Cow position: chr17:9085702-9085494 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 170
Alignm E-value: 0
Alignm gaps (pig, cow): 160, 66

Conread position: 1-445
Cow position: chr18:43024737-43025192 (view UCSC Genome Browser custom track)
Alignm length: 474
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 9

Conread position: 14-181
Cow position: chr18:24452031-24451859 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 135
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 46, 19

Conread position: 1-186
Cow position: chr19:1800202-1800031 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 135
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 9, 0

Conread position: 186-398
Cow position: chr19:13088051-13088262 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 173
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 123, 67

Conread position: 199-316
Cow position: chr19:1799595-1799479 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 102
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 111, 61

Conread position: 1-445
Cow position: chr2:79191854-79191435 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 309, 9

Conread position: 13-360
Cow position: chr2:36131208-36131572 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 255
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 175, 65

Conread position: 30-442
Cow position: chr2:7139940-7140367 (view UCSC Genome Browser custom track)
Alignm length: 443
Alignm identity: 309
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 56, 39

Conread position: 38-228
Cow position: chr2:16282234-16282039 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 148
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 23, 13

Conread position: 186-402
Cow position: chr2:26194239-26194034 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 161
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 124, 63

Conread position: 1-308
Cow position: chr20:15313227-15312909 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 242
Alignm E-value: 7.00649e-45
Alignm gaps (pig, cow): 59, 9

Conread position: 1-446
Cow position: chr20:27192519-27192063 (view UCSC Genome Browser custom track)
Alignm length: 477
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 9

Conread position: 38-445
Cow position: chr20:27359276-27359669 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 290
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 56, 13

Conread position: 93-434
Cow position: chr21:36445912-36446234 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 263
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 257, 70

Conread position: 109-445
Cow position: chr21:29071068-29070728 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 63

Conread position: 1-174
Cow position: chr22:41078-40913 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 131
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 59, 9

Conread position: 1-186
Cow position: chr23:25398809-25398623 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 140
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 40, 9

Conread position: 187-325
Cow position: chr23:12894057-12893921 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 109
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 123, 68

Conread position: 258-365
Cow position: chr23:29283319-29283210 (view UCSC Genome Browser custom track)
Alignm length: 111
Alignm identity: 93
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 39, 31

Conread position: 1-367
Cow position: chr24:37176564-37176221 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 271
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 100, 9

Conread position: 1-400
Cow position: chr24:36849423-36849022 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 297
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 163, 9

Conread position: 15-434
Cow position: chr24:6133918-6133506 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 171, 30

Conread position: 111-329
Cow position: chr24:6191323-6191543 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 173
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 78, 148

Conread position: 249-400
Cow position: chr24:7883105-7883262 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 125
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 11, 40

Conread position: 1-425
Cow position: chr25:18346869-18347314 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 314
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 30, 9

Conread position: 193-445
Cow position: chr25:16827617-16827351 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 202
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 91, 63

Conread position: 8-445
Cow position: chr26:3000252-2999847 (view UCSC Genome Browser custom track)
Alignm length: 447
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 16

Conread position: 37-456
Cow position: chr26:29174711-29174265 (view UCSC Genome Browser custom track)
Alignm length: 458
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 14

Conread position: 38-442
Cow position: chr26:4267062-4266643 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 181

Conread position: 274-445
Cow position: chr26:2955406-2955580 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 127
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 73, 29

Conread position: 25-367
Cow position: chr27:4595355-4595711 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 133

Conread position: 42-445
Cow position: chr27:27157005-27156585 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 309
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 132, 86

Conread position: 25-445
Cow position: chr29:38012015-38012431 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 44

Conread position: 34-398
Cow position: chr29:36187909-36187531 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 200

Conread position: 114-445
Cow position: chr29:40149105-40148762 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 252
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 52, 134

Conread position: 1-366
Cow position: chr3:1811863-1811496 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 267
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 59, 9

Conread position: 8-175
Cow position: chr3:31080911-31080741 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 134
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 25, 45

Conread position: 8-186
Cow position: chr3:2879925-2880100 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 133
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 80, 25

Conread position: 8-445
Cow position: chr3:28151950-28151498 (view UCSC Genome Browser custom track)
Alignm length: 466
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 15

Conread position: 204-441
Cow position: chr3:2880696-2880933 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 185
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 81, 11

Conread position: 56-424
Cow position: chr4:68976187-68976548 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 262
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 125, 70

Conread position: 241-445
Cow position: chr4:43754526-43754321 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 156
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 69, 24

Conread position: 1-445
Cow position: chr5:47052703-47052271 (view UCSC Genome Browser custom track)
Alignm length: 457
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 9

Conread position: 3-439
Cow position: chr5:53952860-53953303 (view UCSC Genome Browser custom track)
Alignm length: 462
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 160, 7

Conread position: 8-400
Cow position: chr5:55421064-55420676 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 271
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 152, 24

Conread position: 177-373
Cow position: chr5:72454630-72454431 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 149
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 129, 76

Conread position: 187-445
Cow position: chr5:12578700-12578435 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 204
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 123, 61

Conread position: 195-445
Cow position: chr5:38636867-38637126 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 199
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 9, 59

Conread position: 198-445
Cow position: chr5:53687596-53687349 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 58

Conread position: 205-443
Cow position: chr5:37821779-37822034 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 192
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 47, 53

Conread position: 1-380
Cow position: chr6:32132677-32133064 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 290
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 38, 9

Conread position: 1-400
Cow position: chr6:38260629-38260198 (view UCSC Genome Browser custom track)
Alignm length: 436
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 9

Conread position: 1-445
Cow position: chr6:44643341-44643778 (view UCSC Genome Browser custom track)
Alignm length: 469
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 187, 33

Conread position: 28-352
Cow position: chr6:11450079-11449748 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 242
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 156, 246

Conread position: 34-434
Cow position: chr6:33398619-33398210 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 17

Conread position: 92-397
Cow position: chr6:36498382-36498684 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 219
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 82, 23

Conread position: 187-306
Cow position: chr6:42046122-42046238 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 97
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 6, 0

Conread position: 198-440
Cow position: chr6:35363854-35363615 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 185
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 111, 62

Conread position: 263-398
Cow position: chr6:41636047-41635907 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 109
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 47, 25

Conread position: 1-376
Cow position: chr7:62524729-62525091 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 9

Conread position: 24-400
Cow position: chr7:51022731-51022339 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 283
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 33, 57

Conread position: 92-181
Cow position: chr7:51630222-51630133 (view UCSC Genome Browser custom track)
Alignm length: 90
Alignm identity: 77
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 1-173
Cow position: chr8:24204943-24205110 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 131
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 87, 9

Conread position: 38-445
Cow position: chr8:23107755-23108170 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 293
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 22, 13

Conread position: 192-331
Cow position: chr8:24205250-24205384 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 115
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 118, 65

Conread position: 1-197
Cow position: chr9:41856222-41856029 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 145
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 77, 9

Conread position: 1-367
Cow position: chr9:26234372-26234745 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 9

Conread position: 103-434
Cow position: chr9:2105805-2105451 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 251
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 54, 168

Conread position: 94-445
Cow position: chrX:42531753-42531381 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 179