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Cow genome map

           
Conread name:
           
rspc005_e14.y1
        

               
Conread position:
               
1-267
               

               
Cow position:
               
chr1:91595683-91595411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
201, 16
               

               
Conread position:
               
1-279
               

               
Cow position:
               
chr1:48685995-48685724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
232, 155
               

               
Conread position:
               
1-313
               

               
Cow position:
               
chr1:23578733-23578411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
168, 184
               

               
Conread position:
               
1-313
               

               
Cow position:
               
chr1:65726613-65726301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
202, 65
               

               
Conread position:
               
1-319
               

               
Cow position:
               
chr1:97047818-97047504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
177, 44
               

               
Conread position:
               
1-326
               

               
Cow position:
               
chr1:81868404-81868067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 102
               

               
Conread position:
               
1-329
               

               
Cow position:
               
chr1:34362730-34363057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
169, 44
               

               
Conread position:
               
1-329
               

               
Cow position:
               
chr1:37762086-37761756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
24, 45
               

               
Conread position:
               
1-329
               

               
Cow position:
               
chr1:50939951-50939613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
47, 287
               

               
Conread position:
               
1-334
               

               
Cow position:
               
chr1:44701712-44701363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
163, 0
               

               
Conread position:
               
1-336
               

               
Cow position:
               
chr1:2181191-2181539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 30
               

               
Conread position:
               
3-321
               

               
Cow position:
               
chr1:71017276-71016944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 177
               

               
Conread position:
               
3-328
               

               
Cow position:
               
chr1:66775514-66775849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
166, 15
               

               
Conread position:
               
4-281
               

               
Cow position:
               
chr1:84252758-84252456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
97, 0
               

               
Conread position:
               
8-327
               

               
Cow position:
               
chr1:57670036-57669724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
251, 166
               

               
Conread position:
               
9-321
               

               
Cow position:
               
chr1:50257585-50257899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 147
               

               
Conread position:
               
9-328
               

               
Cow position:
               
chr1:44677752-44678071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
160, 14
               

               
Conread position:
               
9-336
               

               
Cow position:
               
chr1:82486661-82486993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
105, 36
               

               
Conread position:
               
11-321
               

               
Cow position:
               
chr1:51893310-51892998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
158, 259
               

               
Conread position:
               
37-332
               

               
Cow position:
               
chr1:65031705-65031402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
25, 55
               

               
Conread position:
               
39-336
               

               
Cow position:
               
chr1:64698201-64698497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
216, 117
               

               
Conread position:
               
42-334
               

               
Cow position:
               
chr1:42821090-42821390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
127, 0
               

               
Conread position:
               
45-295
               

               
Cow position:
               
chr1:56856952-56857211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
124, 6
               

               
Conread position:
               
46-336
               

               
Cow position:
               
chr1:35246439-35246742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 104
               

               
Conread position:
               
57-335
               

               
Cow position:
               
chr1:5364107-5364398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
83, 101
               

               
Conread position:
               
91-336
               

               
Cow position:
               
chr1:93948503-93948244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
78, 215
               

               
Conread position:
               
93-321
               

               
Cow position:
               
chr1:94707099-94706864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
76, 29
               

               
Conread position:
               
117-329
               

               
Cow position:
               
chr1:34859421-34859198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
55, 194
               

               
Conread position:
               
127-289
               

               
Cow position:
               
chr1:51984272-51984443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
42, 50
               

               
Conread position:
               
132-336
               

               
Cow position:
               
chr1:81838162-81837946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
38, 18
               

               
Conread position:
               
1-275
               

               
Cow position:
               
chr10:22986755-22986482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
90, 105
               

               
Conread position:
               
1-308
               

               
Cow position:
               
chr10:32827831-32828133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
175, 117
               

               
Conread position:
               
1-329
               

               
Cow position:
               
chr10:57296580-57296241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
108, 71
               

               
Conread position:
               
1-336
               

               
Cow position:
               
chr10:31739084-31739421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
196, 32
               

               
Conread position:
               
1-336
               

               
Cow position:
               
chr10:35443054-35443385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
51, 31
               

               
Conread position:
               
1-336
               

               
Cow position:
               
chr10:49185446-49185105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
168, 115
               

               
Conread position:
               
2-257
               

               
Cow position:
               
chr10:28999365-28999108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
137, 74
               

               
Conread position:
               
3-336
               

               
Cow position:
               
chr10:54151383-54151717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
179, 191
               

               
Conread position:
               
9-293
               

               
Cow position:
               
chr10:22679305-22679601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 73
               

               
Conread position:
               
9-336
               

               
Cow position:
               
chr10:16954895-16955232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
93, 84
               

               
Conread position:
               
10-288
               

               
Cow position:
               
chr10:60739819-60740110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
40, 19
               

               
Conread position:
               
37-321
               

               
Cow position:
               
chr10:49553765-49553471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
67, 113
               

               
Conread position:
               
50-321
               

               
Cow position:
               
chr10:10686435-10686710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
154, 113
               

               
Conread position:
               
60-323
               

               
Cow position:
               
chr10:5641248-5640978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
44, 56
               

               
Conread position:
               
61-329
               

               
Cow position:
               
chr10:55534794-55534516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
70, 66
               

               
Conread position:
               
67-275
               

               
Cow position:
               
chr10:18390286-18390072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
56, 99
               

               
Conread position:
               
87-314
               

               
Cow position:
               
chr10:40738212-40738448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
82, 215
               

               
Conread position:
               
89-334
               

               
Cow position:
               
chr10:67450735-67450480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
42, 214
               

               
Conread position:
               
94-320
               

               
Cow position:
               
chr10:30466996-30466775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
16, 62
               

               
Conread position:
               
99-321
               

               
Cow position:
               
chr10:31047031-31047261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
15, 32
               

               
Conread position:
               
1-274
               

               
Cow position:
               
chr11:74192602-74192316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
168, 0
               

               
Conread position:
               
1-278
               

               
Cow position:
               
chr11:45652179-45651892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
16, 24
               

               
Conread position:
               
1-317
               

               
Cow position:
               
chr11:35570478-35570166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
168, 203
               

               
Conread position:
               
1-333
               

               
Cow position:
               
chr11:54367475-54367168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
130, 44
               

               
Conread position:
               
1-335
               

               
Cow position:
               
chr11:2951354-2951011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
18, 162
               

               
Conread position:
               
1-336
               

               
Cow position:
               
chr11:20805117-20804780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
176, 79
               

               
Conread position:
               
1-336
               

               
Cow position:
               
chr11:51423679-51423351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
98, 79
               

               
Conread position:
               
2-318
               

               
Cow position:
               
chr11:13454528-13454206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
53, 16
               

               
Conread position:
               
2-329
               

               
Cow position:
               
chr11:57755188-57754865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
50, 107
               

               
Conread position:
               
2-330
               

               
Cow position:
               
chr11:17452803-17453132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
112, 46
               

               
Conread position:
               
5-333
               

               
Cow position:
               
chr11:73039318-73039625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
304, 60
               

               
Conread position:
               
8-318
               

               
Cow position:
               
chr11:3368258-3367937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
34, 56
               

               
Conread position:
               
8-329
               

               
Cow position:
               
chr11:33863361-33863028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
161, 0
               

               
Conread position:
               
9-333
               

               
Cow position:
               
chr11:42366038-42366367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 280
               

               
Conread position:
               
9-334
               

               
Cow position:
               
chr11:2323132-2322811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
211, 20
               

               
Conread position:
               
16-326
               

               
Cow position:
               
chr11:42229311-42229635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
35-326
               

               
Cow position:
               
chr11:48293578-48293879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
13, 98
               

               
Conread position:
               
56-336
               

               
Cow position:
               
chr11:45549918-45550203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
124, 59
               

               
Conread position:
               
60-336
               

               
Cow position:
               
chr11:54566966-54567257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
72, 21
               

               
Conread position:
               
61-336
               

               
Cow position:
               
chr11:61486019-61485733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
78, 19
               

               
Conread position:
               
67-318
               

               
Cow position:
               
chr11:35956623-35956882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
102, 54
               

               
Conread position:
               
69-336
               

               
Cow position:
               
chr11:31892742-31893023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
63, 238
               

               
Conread position:
               
71-336
               

               
Cow position:
               
chr11:30226283-30226009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
96, 53
               

               
Conread position:
               
72-272
               

               
Cow position:
               
chr11:62787479-62787684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
125, 38
               

               
Conread position:
               
72-336
               

               
Cow position:
               
chr11:36453848-36453583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
68, 113
               

               
Conread position:
               
77-336
               

               
Cow position:
               
chr11:38737187-38736928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
81, 60
               

               
Conread position:
               
87-330
               

               
Cow position:
               
chr11:2541944-2542204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
82, 208
               

               
Conread position:
               
96-255
               

               
Cow position:
               
chr11:50137039-50136871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
22, 88
               

               
Conread position:
               
112-336
               

               
Cow position:
               
chr11:75360994-75360757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
57, 194
               

               
Conread position:
               
120-323
               

               
Cow position:
               
chr11:73327951-73328153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
49, 86
               

               
Conread position:
               
120-328
               

               
Cow position:
               
chr11:40351203-40350987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
123-329
               

               
Cow position:
               
chr11:49981850-49982070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
128-321
               

               
Cow position:
               
chr11:12147951-12148152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
41, 109
               

               
Conread position:
               
134-326
               

               
Cow position:
               
chr11:53855404-53855608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
35, 176
               

               
Conread position:
               
169-336
               

               
Cow position:
               
chr11:9167108-9166929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
1-252
               

               
Cow position:
               
chr12:10403373-10403114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
78, 129
               

               
Conread position:
               
1-329
               

               
Cow position:
               
chr12:6550619-6550957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
48, 17
               

               
Conread position:
               
3-308
               

               
Cow position:
               
chr12:19187914-19188209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
45, 20
               

               
Conread position:
               
5-334
               

               
Cow position:
               
chr12:19966741-19967087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
116, 40
               

               
Conread position:
               
8-252
               

               
Cow position:
               
chr12:4783463-4783220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
161, 100
               

               
Conread position:
               
8-321
               

               
Cow position:
               
chr12:34383975-34384305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
142, 54
               

               
Conread position:
               
25-281
               

               
Cow position:
               
chr12:10637743-10638008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
101, 20
               

               
Conread position:
               
26-332
               

               
Cow position:
               
chr12:8136946-8136633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
143, 39
               

               
Conread position:
               
45-254
               

               
Cow position:
               
chr12:42798069-42798288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
124, 0
               

               
Conread position:
               
61-254
               

               
Cow position:
               
chr12:4378554-4378354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
111, 8
               

               
Conread position:
               
111-307
               

               
Cow position:
               
chr12:22214749-22214544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
58, 160
               

               
Conread position:
               
1-256
               

               
Cow position:
               
chr13:41568517-41568255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
74, 44
               

               
Conread position:
               
1-313
               

               
Cow position:
               
chr13:41362419-41362740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
73, 101
               

               
Conread position:
               
1-324
               

               
Cow position:
               
chr13:14552816-14552483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
168, 36
               

               
Conread position:
               
1-329
               

               
Cow position:
               
chr13:21855151-21855490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
167, 115
               

               
Conread position:
               
1-336
               

               
Cow position:
               
chr13:51441532-51441189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
35, 17
               

               
Conread position:
               
1-336
               

               
Cow position:
               
chr13:51482024-51481681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
41, 22
               

               
Conread position:
               
2-268
               

               
Cow position:
               
chr13:24580276-24580002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
59, 118
               

               
Conread position:
               
2-401
               

               
Cow position:
               
chr13:30036303-30036727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 42
               

               
Conread position:
               
3-336
               

               
Cow position:
               
chr13:58287866-58287522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
199, 56
               

               
Conread position:
               
5-272
               

               
Cow position:
               
chr13:24110245-24109974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
164, 13
               

               
Conread position:
               
6-311
               

               
Cow position:
               
chr13:27539944-27540236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
163, 65
               

               
Conread position:
               
8-321
               

               
Cow position:
               
chr13:41397644-41397963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
161, 51
               

               
Conread position:
               
8-336
               

               
Cow position:
               
chr13:488344-488673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
195, 52
               

               
Conread position:
               
9-282
               

               
Cow position:
               
chr13:11687115-11687391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
161, 224
               

               
Conread position:
               
10-336
               

               
Cow position:
               
chr13:14183134-14182790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
159, 108
               

               
Conread position:
               
41-329
               

               
Cow position:
               
chr13:2507991-2508286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
128, 32
               

               
Conread position:
               
53-336
               

               
Cow position:
               
chr13:14645680-14645380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
22, 209
               

               
Conread position:
               
56-270
               

               
Cow position:
               
chr13:19782630-19782857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
24, 96
               

               
Conread position:
               
59-329
               

               
Cow position:
               
chr13:34814820-34814547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
84, 131
               

               
Conread position:
               
109-321
               

               
Cow position:
               
chr13:37807098-37807327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
58, 28
               

               
Conread position:
               
118-329
               

               
Cow position:
               
chr13:45648405-45648624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
51, 154
               

               
Conread position:
               
119-336
               

               
Cow position:
               
chr13:43033823-43034052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
51, 40
               

               
Conread position:
               
121-318
               

               
Cow position:
               
chr13:41361958-41361762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
83, 11
               

               
Conread position:
               
128-328
               

               
Cow position:
               
chr13:30081785-30081585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
41, 63
               

               
Conread position:
               
1-295
               

               
Cow position:
               
chr14:25235067-25234775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
168, 204
               

               
Conread position:
               
1-318
               

               
Cow position:
               
chr14:1735847-1735517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
48, 150
               

               
Conread position:
               
2-329
               

               
Cow position:
               
chr14:16190241-16190572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
219, 90
               

               
Conread position:
               
2-336
               

               
Cow position:
               
chr14:41798141-41798488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
167, 78
               

               
Conread position:
               
4-275
               

               
Cow position:
               
chr14:13009561-13009294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
166, 66
               

               
Conread position:
               
5-147
               

               
Cow position:
               
chr14:37044436-37044576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
111, 0
               

               
Conread position:
               
7-333
               

               
Cow position:
               
chr14:41477619-41477954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
162, 297
               

               
Conread position:
               
8-332
               

               
Cow position:
               
chr14:26286539-26286870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
42, 91
               

               
Conread position:
               
11-321
               

               
Cow position:
               
chr14:11755813-11756134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
158, 13
               

               
Conread position:
               
27-278
               

               
Cow position:
               
chr14:14075817-14076070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
142, 18
               

               
Conread position:
               
39-272
               

               
Cow position:
               
chr14:3124961-3125206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
67, 45
               

               
Conread position:
               
55-334
               

               
Cow position:
               
chr14:39149610-39149889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 218
               

               
Conread position:
               
57-334
               

               
Cow position:
               
chr14:31182209-31182488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
41, 69
               

               
Conread position:
               
57-336
               

               
Cow position:
               
chr14:41630721-41631009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
146, 46
               

               
Conread position:
               
88-336
               

               
Cow position:
               
chr14:40759164-40759422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
17, 28
               

               
Conread position:
               
109-332
               

               
Cow position:
               
chr14:17776868-17776650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
60, 92
               

               
Conread position:
               
126-334
               

               
Cow position:
               
chr14:20273071-20273298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
43, 186
               

               
Conread position:
               
128-333
               

               
Cow position:
               
chr14:13092623-13092841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
160-334
               

               
Cow position:
               
chr14:25658482-25658312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
9, 24
               

               
Conread position:
               
1-196
               

               
Cow position:
               
chr15:14718506-14718699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
19, 24
               

               
Conread position:
               
1-313
               

               
Cow position:
               
chr15:50870138-50870461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
128, 299
               

               
Conread position:
               
1-321
               

               
Cow position:
               
chr15:40109418-40109753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
123, 39
               

               
Conread position:
               
1-329
               

               
Cow position:
               
chr15:41786027-41785686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
1-331
               

               
Cow position:
               
chr15:46231184-46231519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
168, 26
               

               
Conread position:
               
1-335
               

               
Cow position:
               
chr15:11664376-11664711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 111
               

               
Conread position:
               
1-336
               

               
Cow position:
               
chr15:704953-704626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
117, 44
               

               
Conread position:
               
1-336
               

               
Cow position:
               
chr15:7448027-7447690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
219, 187
               

               
Conread position:
               
1-337
               

               
Cow position:
               
chr15:9438285-9438623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
81, 58
               

               
Conread position:
               
2-257
               

               
Cow position:
               
chr15:3777971-3778235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
167, 0
               

               
Conread position:
               
2-295
               

               
Cow position:
               
chr15:21966719-21967024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
172, 64
               

               
Conread position:
               
3-328
               

               
Cow position:
               
chr15:46105912-46106249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
165, 156
               

               
Conread position:
               
3-337
               

               
Cow position:
               
chr15:37460559-37460889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
166, 203
               

               
Conread position:
               
10-316
               

               
Cow position:
               
chr15:16926003-16925693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
38, 13
               

               
Conread position:
               
10-327
               

               
Cow position:
               
chr15:17442613-17442290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
99, 43
               

               
Conread position:
               
11-336
               

               
Cow position:
               
chr15:53355382-53355061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
217, 89
               

               
Conread position:
               
25-313
               

               
Cow position:
               
chr15:39446594-39446296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
144, 276
               

               
Conread position:
               
26-265
               

               
Cow position:
               
chr15:19257038-19256789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
51, 135
               

               
Conread position:
               
33-318
               

               
Cow position:
               
chr15:25085459-25085166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
143, 29
               

               
Conread position:
               
36-336
               

               
Cow position:
               
chr15:6240930-6241237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
133, 23
               

               
Conread position:
               
45-283
               

               
Cow position:
               
chr15:29245097-29244848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
99, 75
               

               
Conread position:
               
46-336
               

               
Cow position:
               
chr15:12350521-12350805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
30, 79
               

               
Conread position:
               
122-321
               

               
Cow position:
               
chr15:25048120-25048331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
44, 12
               

               
Conread position:
               
211-335
               

               
Cow position:
               
chr15:42101773-42101895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
96, 56
               

               
Conread position:
               
1-333
               

               
Cow position:
               
chr16:42132196-42132528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
51, 127
               

               
Conread position:
               
1-336
               

               
Cow position:
               
chr16:12175743-12175385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
41, 17
               

               
Conread position:
               
2-181
               

               
Cow position:
               
chr16:43647117-43647298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
167, 0
               

               
Conread position:
               
2-275
               

               
Cow position:
               
chr16:45816779-45816495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
200, 0
               

               
Conread position:
               
2-332
               

               
Cow position:
               
chr16:42863246-42862917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
167, 99
               

               
Conread position:
               
8-312
               

               
Cow position:
               
chr16:2202022-2202334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
161, 103
               

               
Conread position:
               
8-323
               

               
Cow position:
               
chr16:52408755-52408431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
8, 26
               

               
Conread position:
               
8-326
               

               
Cow position:
               
chr16:31504264-31504591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 163
               

               
Conread position:
               
8-336
               

               
Cow position:
               
chr16:11309691-11310025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
161, 138
               

               
Conread position:
               
9-270
               

               
Cow position:
               
chr16:11640271-11640543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
160, 167
               

               
Conread position:
               
10-336
               

               
Cow position:
               
chr16:44703967-44704297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 79
               

               
Conread position:
               
15-272
               

               
Cow position:
               
chr16:7340133-7340397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
179, 0
               

               
Conread position:
               
18-336
               

               
Cow position:
               
chr16:4748599-4748271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
163, 193
               

               
Conread position:
               
27-268
               

               
Cow position:
               
chr16:49387651-49387900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
142, 21
               

               
Conread position:
               
80-332
               

               
Cow position:
               
chr16:42126138-42126392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
90, 57
               

               
Conread position:
               
120-329
               

               
Cow position:
               
chr16:19327079-19327294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
50, 184
               

               
Conread position:
               
131-321
               

               
Cow position:
               
chr16:23317636-23317437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
38, 174
               

               
Conread position:
               
1-251
               

               
Cow position:
               
chr17:597932-597674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
168, 32
               

               
Conread position:
               
1-271
               

               
Cow position:
               
chr17:43145464-43145188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
49, 31
               

               
Conread position:
               
1-308
               

               
Cow position:
               
chr17:3550360-3550056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
202, 49
               

               
Conread position:
               
1-333
               

               
Cow position:
               
chr17:41479299-41478978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
202, 41
               

               
Conread position:
               
1-336
               

               
Cow position:
               
chr17:11588179-11587843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 265
               

               
Conread position:
               
2-281
               

               
Cow position:
               
chr17:26474329-26474592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
169, 108
               

               
Conread position:
               
3-272
               

               
Cow position:
               
chr17:1220078-1219800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
3-336
               

               
Cow position:
               
chr17:12133108-12132767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
47, 95
               

               
Conread position:
               
4-319
               

               
Cow position:
               
chr17:10285962-10285660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
136, 161
               

               
Conread position:
               
9-296
               

               
Cow position:
               
chr17:37460278-37460574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
159, 261
               

               
Conread position:
               
10-321
               

               
Cow position:
               
chr17:1386889-1386578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
26, 13
               

               
Conread position:
               
19-329
               

               
Cow position:
               
chr17:19599258-19598939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
96, 52
               

               
Conread position:
               
23-336
               

               
Cow position:
               
chr17:36310620-36310928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
124, 43
               

               
Conread position:
               
27-326
               

               
Cow position:
               
chr17:28184072-28183771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
142, 76
               

               
Conread position:
               
35-272
               

               
Cow position:
               
chr17:23041503-23041749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
8.96831e-44
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
36-337
               

               
Cow position:
               
chr17:16319987-16320296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
133, 44
               

               
Conread position:
               
40-296
               

               
Cow position:
               
chr17:20497704-20497974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
57-332
               

               
Cow position:
               
chr17:29228826-29229101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
94, 47
               

               
Conread position:
               
63-308
               

               
Cow position:
               
chr17:8859675-8859428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
106, 65
               

               
Conread position:
               
112-336
               

               
Cow position:
               
chr17:37700967-37701192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
90, 44
               

               
Conread position:
               
120-321
               

               
Cow position:
               
chr17:43227355-43227559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
50, 152
               

               
Conread position:
               
202-336
               

               
Cow position:
               
chr17:4303496-4303632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
58, 88
               

               
Conread position:
               
1-242
               

               
Cow position:
               
chr18:22681908-22682157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
169, 36
               

               
Conread position:
               
1-301
               

               
Cow position:
               
chr18:48529233-48529542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
1-321
               

               
Cow position:
               
chr18:17454892-17454566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 31
               

               
Conread position:
               
1-323
               

               
Cow position:
               
chr18:28268800-28268472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
166, 84
               

               
Conread position:
               
1-336
               

               
Cow position:
               
chr18:902147-902494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
113, 137
               

               
Conread position:
               
1-336
               

               
Cow position:
               
chr18:33347209-33347552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
168, 87
               

               
Conread position:
               
1-336
               

               
Cow position:
               
chr18:44403958-44404297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 112
               

               
Conread position:
               
3-321
               

               
Cow position:
               
chr18:51300379-51300710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
52, 303
               

               
Conread position:
               
8-282
               

               
Cow position:
               
chr18:10978129-10978397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
36, 184
               

               
Conread position:
               
9-329
               

               
Cow position:
               
chr18:37874651-37874310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
95, 21
               

               
Conread position:
               
9-336
               

               
Cow position:
               
chr18:14816340-14816685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
160, 109
               

               
Conread position:
               
12-273
               

               
Cow position:
               
chr18:12275253-12275511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
7, 111
               

               
Conread position:
               
22-336
               

               
Cow position:
               
chr18:18854566-18854891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
147, 30
               

               
Conread position:
               
24-264
               

               
Cow position:
               
chr18:44180583-44180344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
146, 39
               

               
Conread position:
               
48-336
               

               
Cow position:
               
chr18:17753300-17753003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 259
               

               
Conread position:
               
72-272
               

               
Cow position:
               
chr18:44047716-44047506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
97, 65
               

               
Conread position:
               
72-336
               

               
Cow position:
               
chr18:40078985-40078708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
16, 204
               

               
Conread position:
               
81-305
               

               
Cow position:
               
chr18:14761352-14761593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
25, 230
               

               
Conread position:
               
90-307
               

               
Cow position:
               
chr18:13420194-13420413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
79, 60
               

               
Conread position:
               
98-309
               

               
Cow position:
               
chr18:42162036-42162243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
71, 170
               

               
Conread position:
               
145-335
               

               
Cow position:
               
chr18:19401938-19401746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
34, 15
               

               
Conread position:
               
1-321
               

               
Cow position:
               
chr19:33641196-33641520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
192, 44
               

               
Conread position:
               
1-328
               

               
Cow position:
               
chr19:24672370-24672031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 24
               

               
Conread position:
               
1-329
               

               
Cow position:
               
chr19:49882496-49882821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
43, 85
               

               
Conread position:
               
1-336
               

               
Cow position:
               
chr19:6173410-6173079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
18, 24
               

               
Conread position:
               
2-252
               

               
Cow position:
               
chr19:28014880-28015145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
74, 87
               

               
Conread position:
               
2-268
               

               
Cow position:
               
chr19:38559163-38558899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
142, 56
               

               
Conread position:
               
2-295
               

               
Cow position:
               
chr19:3585702-3585399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
59, 80
               

               
Conread position:
               
2-336
               

               
Cow position:
               
chr19:29088875-29089213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 62
               

               
Conread position:
               
3-326
               

               
Cow position:
               
chr19:4551999-4551650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
155, 0
               

               
Conread position:
               
23-267
               

               
Cow position:
               
chr19:24214024-24214276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
146, 21
               

               
Conread position:
               
35-336
               

               
Cow position:
               
chr19:35784975-35785284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
17, 58
               

               
Conread position:
               
51-336
               

               
Cow position:
               
chr19:41786615-41786329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
145, 29
               

               
Conread position:
               
78-321
               

               
Cow position:
               
chr19:28804376-28804632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
109-336
               

               
Cow position:
               
chr19:6981132-6980894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
112-336
               

               
Cow position:
               
chr19:43510845-43511081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
57, 25
               

               
Conread position:
               
119-329
               

               
Cow position:
               
chr19:4359749-4359963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
51, 106
               

               
Conread position:
               
121-295
               

               
Cow position:
               
chr19:6614323-6614507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
126-329
               

               
Cow position:
               
chr19:6629215-6629003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
43, 175
               

               
Conread position:
               
1-295
               

               
Cow position:
               
chr2:3768895-3768600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
168, 22
               

               
Conread position:
               
1-314
               

               
Cow position:
               
chr2:39692557-39692872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
172, 41
               

               
Conread position:
               
1-336
               

               
Cow position:
               
chr2:853085-852735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
168, 26
               

               
Conread position:
               
1-336
               

               
Cow position:
               
chr2:78645619-78645263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
105, 12
               

               
Conread position:
               
1-336
               

               
Cow position:
               
chr2:79907736-79907393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 81
               

               
Conread position:
               
2-254
               

               
Cow position:
               
chr2:78518477-78518725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
170, 13
               

               
Conread position:
               
2-316
               

               
Cow position:
               
chr2:64525073-64525397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
192, 60
               

               
Conread position:
               
2-332
               

               
Cow position:
               
chr2:1957486-1957817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
167, 15
               

               
Conread position:
               
2-336
               

               
Cow position:
               
chr2:62435964-62435619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
33, 48
               

               
Conread position:
               
2-337
               

               
Cow position:
               
chr2:44057246-44056902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
152, 49
               

               
Conread position:
               
3-271
               

               
Cow position:
               
chr2:44616141-44616422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
122, 0
               

               
Conread position:
               
4-336
               

               
Cow position:
               
chr2:60946362-60946720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
101, 41
               

               
Conread position:
               
8-294
               

               
Cow position:
               
chr2:43868409-43868704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
9-161
               

               
Cow position:
               
chr2:82374946-82374797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
108, 40
               

               
Conread position:
               
10-321
               

               
Cow position:
               
chr2:57699516-57699839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
157, 295
               

               
Conread position:
               
12-287
               

               
Cow position:
               
chr2:52653532-52653822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
128, 215
               

               
Conread position:
               
12-336
               

               
Cow position:
               
chr2:4699318-4699650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
157, 56
               

               
Conread position:
               
13-317
               

               
Cow position:
               
chr2:76827729-76828019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
249, 124
               

               
Conread position:
               
15-296
               

               
Cow position:
               
chr2:16099449-16099155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
34, 210
               

               
Conread position:
               
26-308
               

               
Cow position:
               
chr2:56463363-56463640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
233, 40
               

               
Conread position:
               
35-278
               

               
Cow position:
               
chr2:34053194-34052934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
44, 159
               

               
Conread position:
               
48-337
               

               
Cow position:
               
chr2:871633-871330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 102
               

               
Conread position:
               
49-336
               

               
Cow position:
               
chr2:72646723-72646434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 14
               

               
Conread position:
               
55-336
               

               
Cow position:
               
chr2:15215192-15215461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
114, 56
               

               
Conread position:
               
57-314
               

               
Cow position:
               
chr2:38560936-38561193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
35, 24
               

               
Conread position:
               
57-336
               

               
Cow position:
               
chr2:42656340-42656625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
112, 56
               

               
Conread position:
               
61-329
               

               
Cow position:
               
chr2:16562681-16562947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
109, 83
               

               
Conread position:
               
73-336
               

               
Cow position:
               
chr2:20554729-20554459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 30
               

               
Conread position:
               
74-316
               

               
Cow position:
               
chr2:2714575-2714828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
5, 201
               

               
Conread position:
               
74-329
               

               
Cow position:
               
chr2:43929610-43929855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
178, 42
               

               
Conread position:
               
89-299
               

               
Cow position:
               
chr2:39606299-39606080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
80, 211
               

               
Conread position:
               
92-336
               

               
Cow position:
               
chr2:64447394-64447156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
76, 28
               

               
Conread position:
               
102-336
               

               
Cow position:
               
chr2:76985805-76985566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
67, 164
               

               
Conread position:
               
106-295
               

               
Cow position:
               
chr2:1837802-1837608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
106-336
               

               
Cow position:
               
chr2:1369755-1369997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
131-337
               

               
Cow position:
               
chr2:42206822-42206601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
38, 52
               

               
Conread position:
               
141-327
               

               
Cow position:
               
chr2:22669954-22669768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
8, 160
               

               
Conread position:
               
1-275
               

               
Cow position:
               
chr20:11657068-11657347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
201, 165
               

               
Conread position:
               
1-336
               

               
Cow position:
               
chr20:1534449-1534105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
91, 123
               

               
Conread position:
               
1-336
               

               
Cow position:
               
chr20:2016724-2016377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
168, 136
               

               
Conread position:
               
1-336
               

               
Cow position:
               
chr20:17480678-17480328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
30, 55
               

               
Conread position:
               
3-317
               

               
Cow position:
               
chr20:4240754-4241068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
164, 97
               

               
Conread position:
               
8-332
               

               
Cow position:
               
chr20:26458783-26458445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
161, 133
               

               
Conread position:
               
11-329
               

               
Cow position:
               
chr20:4243130-4243452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
95, 13
               

               
Conread position:
               
23-336
               

               
Cow position:
               
chr20:23839314-23838998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
147, 27
               

               
Conread position:
               
25-272
               

               
Cow position:
               
chr20:29054426-29054684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
70, 128
               

               
Conread position:
               
35-323
               

               
Cow position:
               
chr20:24494116-24494400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
139, 213
               

               
Conread position:
               
57-318
               

               
Cow position:
               
chr20:24446594-24446320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
13, 242
               

               
Conread position:
               
60-321
               

               
Cow position:
               
chr20:8364635-8364369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
45, 76
               

               
Conread position:
               
88-333
               

               
Cow position:
               
chr20:7875705-7875450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
82, 53
               

               
Conread position:
               
103-336
               

               
Cow position:
               
chr20:42931041-42931283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
66, 42
               

               
Conread position:
               
1-252
               

               
Cow position:
               
chr21:32895023-32894765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
168, 47
               

               
Conread position:
               
1-296
               

               
Cow position:
               
chr21:27032648-27032949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
34, 69
               

               
Conread position:
               
1-318
               

               
Cow position:
               
chr21:21623476-21623800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
168, 50
               

               
Conread position:
               
1-321
               

               
Cow position:
               
chr21:39074685-39074359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
43, 21
               

               
Conread position:
               
1-323
               

               
Cow position:
               
chr21:40082734-40083072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
17, 23
               

               
Conread position:
               
1-327
               

               
Cow position:
               
chr21:21032176-21032514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
168, 65
               

               
Conread position:
               
1-329
               

               
Cow position:
               
chr21:48895689-48896014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
163, 20
               

               
Conread position:
               
1-332
               

               
Cow position:
               
chr21:22944009-22944349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
168, 79
               

               
Conread position:
               
1-334
               

               
Cow position:
               
chr21:33948518-33948851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
168, 17
               

               
Conread position:
               
1-336
               

               
Cow position:
               
chr21:21478826-21478488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
168, 24
               

               
Conread position:
               
2-320
               

               
Cow position:
               
chr21:11155076-11154753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
46, 19
               

               
Conread position:
               
2-323
               

               
Cow position:
               
chr21:14122263-14121940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
116, 64
               

               
Conread position:
               
3-287
               

               
Cow position:
               
chr21:12099732-12100024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
139, 181
               

               
Conread position:
               
3-329
               

               
Cow position:
               
chr21:30162012-30161693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
155, 140
               

               
Conread position:
               
3-335
               

               
Cow position:
               
chr21:36621281-36620936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
166, 42
               

               
Conread position:
               
4-326
               

               
Cow position:
               
chr21:44262406-44262728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
165, 120
               

               
Conread position:
               
10-321
               

               
Cow position:
               
chr21:11327714-11327401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
41, 8
               

               
Conread position:
               
13-329
               

               
Cow position:
               
chr21:29908863-29908538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
80, 43
               

               
Conread position:
               
26-327
               

               
Cow position:
               
chr21:13286398-13286698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
15, 34
               

               
Conread position:
               
40-329
               

               
Cow position:
               
chr21:46968461-46968188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
129, 42
               

               
Conread position:
               
61-294
               

               
Cow position:
               
chr21:30354115-30354361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
64-269
               

               
Cow position:
               
chr21:20231614-20231407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
27, 7
               

               
Conread position:
               
120-335
               

               
Cow position:
               
chr21:13199256-13199475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
49, 148
               

               
Conread position:
               
123-336
               

               
Cow position:
               
chr21:40647160-40647384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
46, 14
               

               
Conread position:
               
134-335
               

               
Cow position:
               
chr21:40628611-40628813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
35, 80
               

               
Conread position:
               
1-289
               

               
Cow position:
               
chr22:13588010-13587718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
49, 127
               

               
Conread position:
               
1-323
               

               
Cow position:
               
chr22:13826766-13826437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
199, 102
               

               
Conread position:
               
1-336
               

               
Cow position:
               
chr22:13289882-13290230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 47
               

               
Conread position:
               
2-335
               

               
Cow position:
               
chr22:8646745-8646412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
203, 41
               

               
Conread position:
               
3-311
               

               
Cow position:
               
chr22:36852808-36852493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
166, 42
               

               
Conread position:
               
9-318
               

               
Cow position:
               
chr22:32504251-32504564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
160, 263
               

               
Conread position:
               
9-334
               

               
Cow position:
               
chr22:36357089-36357427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
9, 16
               

               
Conread position:
               
10-334
               

               
Cow position:
               
chr22:28312430-28312743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
141, 57
               

               
Conread position:
               
15-337
               

               
Cow position:
               
chr22:4944153-4944487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
154, 23
               

               
Conread position:
               
18-336
               

               
Cow position:
               
chr22:24048793-24048472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
151, 54
               

               
Conread position:
               
25-336
               

               
Cow position:
               
chr22:17923545-17923230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
151, 125
               

               
Conread position:
               
28-321
               

               
Cow position:
               
chr22:9147444-9147754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
108, 17
               

               
Conread position:
               
51-336
               

               
Cow position:
               
chr22:10562752-10563049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
118, 0
               

               
Conread position:
               
55-304
               

               
Cow position:
               
chr22:35692798-35692550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
114, 35
               

               
Conread position:
               
57-337
               

               
Cow position:
               
chr22:28992458-28992753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
112, 70
               

               
Conread position:
               
71-336
               

               
Cow position:
               
chr22:14490231-14490510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
20, 85
               

               
Conread position:
               
74-336
               

               
Cow position:
               
chr22:4637107-4636850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
95, 70
               

               
Conread position:
               
79-329
               

               
Cow position:
               
chr22:9637935-9638185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
90, 188
               

               
Conread position:
               
123-401
               

               
Cow position:
               
chr22:40392656-40392934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
11, 33
               

               
Conread position:
               
132-332
               

               
Cow position:
               
chr22:12631675-12631464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
37, 18
               

               
Conread position:
               
147-336
               

               
Cow position:
               
chr22:12060638-12060437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
22, 164
               

               
Conread position:
               
1-321
               

               
Cow position:
               
chr23:9607917-9608230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
169, 68
               

               
Conread position:
               
1-334
               

               
Cow position:
               
chr23:36676126-36675788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 119
               

               
Conread position:
               
1-336
               

               
Cow position:
               
chr23:15351230-15351565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
168, 75
               

               
Conread position:
               
8-327
               

               
Cow position:
               
chr23:8389104-8388783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
161, 55
               

               
Conread position:
               
9-328
               

               
Cow position:
               
chr23:35275254-35275588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
52, 12
               

               
Conread position:
               
9-329
               

               
Cow position:
               
chr23:9542811-9542481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
161, 294
               

               
Conread position:
               
10-333
               

               
Cow position:
               
chr23:8322791-8323128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
160, 127
               

               
Conread position:
               
36-321
               

               
Cow position:
               
chr23:20389969-20389673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
133, 269
               

               
Conread position:
               
57-273
               

               
Cow position:
               
chr23:15657765-15657537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
112, 0
               

               
Conread position:
               
79-313
               

               
Cow position:
               
chr23:22873656-22873409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
66, 234
               

               
Conread position:
               
97-271
               

               
Cow position:
               
chr23:11088900-11088717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
207-329
               

               
Cow position:
               
chr23:26541873-26541751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
54, 94
               

               
Conread position:
               
1-307
               

               
Cow position:
               
chr24:30449294-30449609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
29, 40
               

               
Conread position:
               
1-321
               

               
Cow position:
               
chr24:32363226-32362894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 247
               

               
Conread position:
               
1-329
               

               
Cow position:
               
chr24:1067307-1066988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
278, 44
               

               
Conread position:
               
1-334
               

               
Cow position:
               
chr24:17030885-17030563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 206
               

               
Conread position:
               
2-304
               

               
Cow position:
               
chr24:23806119-23806420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
155, 26
               

               
Conread position:
               
8-329
               

               
Cow position:
               
chr24:22911790-22912123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
27, 22
               

               
Conread position:
               
10-336
               

               
Cow position:
               
chr24:37886463-37886801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
159, 42
               

               
Conread position:
               
31-274
               

               
Cow position:
               
chr24:36563129-36562897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
138, 14
               

               
Conread position:
               
45-329
               

               
Cow position:
               
chr24:5768906-5768609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
11, 56
               

               
Conread position:
               
46-334
               

               
Cow position:
               
chr24:28730219-28730504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
122, 17
               

               
Conread position:
               
120-336
               

               
Cow position:
               
chr24:29395123-29394902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
49, 79
               

               
Conread position:
               
1-329
               

               
Cow position:
               
chr25:32566674-32567009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
85, 151
               

               
Conread position:
               
1-336
               

               
Cow position:
               
chr25:9077385-9077723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
81, 9
               

               
Conread position:
               
1-336
               

               
Cow position:
               
chr25:9646772-9647113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
168, 26
               

               
Conread position:
               
1-336
               

               
Cow position:
               
chr25:24664468-24664121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
168, 23
               

               
Conread position:
               
2-327
               

               
Cow position:
               
chr25:21147061-21147389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
46, 12
               

               
Conread position:
               
3-265
               

               
Cow position:
               
chr25:12865588-12865861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
166, 0
               

               
Conread position:
               
3-317
               

               
Cow position:
               
chr25:26753512-26753187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
6, 225
               

               
Conread position:
               
3-336
               

               
Cow position:
               
chr25:19107291-19107620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
55, 100
               

               
Conread position:
               
9-295
               

               
Cow position:
               
chr25:23740428-23740133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
160, 86
               

               
Conread position:
               
12-334
               

               
Cow position:
               
chr25:23895090-23895402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
91, 12
               

               
Conread position:
               
18-318
               

               
Cow position:
               
chr25:28661659-28661971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
62, 146
               

               
Conread position:
               
22-332
               

               
Cow position:
               
chr25:14619184-14618862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
153, 112
               

               
Conread position:
               
24-329
               

               
Cow position:
               
chr25:19073487-19073783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
120, 21
               

               
Conread position:
               
26-332
               

               
Cow position:
               
chr25:32449066-32449385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
143, 280
               

               
Conread position:
               
96-320
               

               
Cow position:
               
chr25:19425714-19425485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
96-337
               

               
Cow position:
               
chr25:12216033-12215779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
23, 223
               

               
Conread position:
               
100-336
               

               
Cow position:
               
chr25:33027906-33028152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
102, 136
               

               
Conread position:
               
126-336
               

               
Cow position:
               
chr25:30444479-30444688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
82, 63
               

               
Conread position:
               
206-405
               

               
Cow position:
               
chr25:50583-50780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
165, 87
               

               
Conread position:
               
1-304
               

               
Cow position:
               
chr26:4107380-4107679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
25, 81
               

               
Conread position:
               
3-336
               

               
Cow position:
               
chr26:4112199-4111873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
66, 15
               

               
Conread position:
               
8-322
               

               
Cow position:
               
chr26:35148805-35148484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
161, 129
               

               
Conread position:
               
11-336
               

               
Cow position:
               
chr26:232243-231921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
31, 128
               

               
Conread position:
               
23-336
               

               
Cow position:
               
chr26:19564254-19563933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
127, 28
               

               
Conread position:
               
26-303
               

               
Cow position:
               
chr26:19873497-19873228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
24, 158
               

               
Conread position:
               
42-336
               

               
Cow position:
               
chr26:19012967-19013267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
127, 11
               

               
Conread position:
               
51-336
               

               
Cow position:
               
chr26:12991977-12992270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
118, 83
               

               
Conread position:
               
54-336
               

               
Cow position:
               
chr26:17573013-17573288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
170, 83
               

               
Conread position:
               
60-308
               

               
Cow position:
               
chr26:30047204-30046941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
63-278
               

               
Cow position:
               
chr26:2388175-2387948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
35, 167
               

               
Conread position:
               
87-334
               

               
Cow position:
               
chr26:7307142-7307393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
82, 40
               

               
Conread position:
               
137-321
               

               
Cow position:
               
chr26:29488301-29488489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
63, 26
               

               
Conread position:
               
202-336
               

               
Cow position:
               
chr26:26281059-26281198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
7, 96
               

               
Conread position:
               
1-201
               

               
Cow position:
               
chr27:865641-865842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
167, 0
               

               
Conread position:
               
1-336
               

               
Cow position:
               
chr27:26621233-26620901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
15, 76
               

               
Conread position:
               
2-334
               

               
Cow position:
               
chr27:31547522-31547176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
95, 117
               

               
Conread position:
               
5-321
               

               
Cow position:
               
chr27:25873663-25873970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
192, 89
               

               
Conread position:
               
36-336
               

               
Cow position:
               
chr27:27822984-27822681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
79, 90
               

               
Conread position:
               
87-336
               

               
Cow position:
               
chr27:4874220-4873971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
115, 14
               

               
Conread position:
               
1-268
               

               
Cow position:
               
chr28:6812260-6811993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
198, 24
               

               
Conread position:
               
1-293
               

               
Cow position:
               
chr28:33768089-33768389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
169, 268
               

               
Conread position:
               
1-329
               

               
Cow position:
               
chr28:32198482-32198813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
168, 50
               

               
Conread position:
               
1-333
               

               
Cow position:
               
chr28:11256821-11256478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
97, 22
               

               
Conread position:
               
1-336
               

               
Cow position:
               
chr28:22234416-22234072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
168, 99
               

               
Conread position:
               
4-329
               

               
Cow position:
               
chr28:14447670-14448002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
155, 78
               

               
Conread position:
               
8-308
               

               
Cow position:
               
chr28:8619457-8619148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
35, 10
               

               
Conread position:
               
8-328
               

               
Cow position:
               
chr28:24734606-24734941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
8, 240
               

               
Conread position:
               
8-329
               

               
Cow position:
               
chr28:25913728-25913404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 15
               

               
Conread position:
               
9-272
               

               
Cow position:
               
chr28:31068682-31068963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
116, 0
               

               
Conread position:
               
9-334
               

               
Cow position:
               
chr28:21629751-21630071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
46, 95
               

               
Conread position:
               
10-336
               

               
Cow position:
               
chr28:20630010-20629681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
160, 57
               

               
Conread position:
               
12-269
               

               
Cow position:
               
chr28:31850756-31850492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
157, 33
               

               
Conread position:
               
21-307
               

               
Cow position:
               
chr28:31480088-31480381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
89, 30
               

               
Conread position:
               
32-275
               

               
Cow position:
               
chr28:28441829-28442084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
125, 0
               

               
Conread position:
               
41-334
               

               
Cow position:
               
chr28:33281019-33281308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
130, 152
               

               
Conread position:
               
53-336
               

               
Cow position:
               
chr28:14505938-14506223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
117, 59
               

               
Conread position:
               
65-273
               

               
Cow position:
               
chr28:2865334-2865122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
95, 128
               

               
Conread position:
               
72-337
               

               
Cow position:
               
chr28:24620727-24620451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
97, 69
               

               
Conread position:
               
87-329
               

               
Cow position:
               
chr28:27777532-27777293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
65, 174
               

               
Conread position:
               
111-289
               

               
Cow position:
               
chr28:30899603-30899421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
12, 82
               

               
Conread position:
               
1-267
               

               
Cow position:
               
chr29:23384364-23384629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
54, 166
               

               
Conread position:
               
1-276
               

               
Cow position:
               
chr29:39371423-39371707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
134, 117
               

               
Conread position:
               
1-308
               

               
Cow position:
               
chr29:26967754-26968064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
169, 22
               

               
Conread position:
               
1-336
               

               
Cow position:
               
chr29:13646862-13646541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
43, 79
               

               
Conread position:
               
1-336
               

               
Cow position:
               
chr29:34121466-34121127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
202, 44
               

               
Conread position:
               
2-336
               

               
Cow position:
               
chr29:4489541-4489885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
167, 31
               

               
Conread position:
               
2-337
               

               
Cow position:
               
chr29:18399306-18399643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
167, 150
               

               
Conread position:
               
3-252
               

               
Cow position:
               
chr29:15802621-15802871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
166, 33
               

               
Conread position:
               
3-321
               

               
Cow position:
               
chr29:20972506-20972172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 145
               

               
Conread position:
               
9-330
               

               
Cow position:
               
chr29:18266440-18266106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
160, 36
               

               
Conread position:
               
26-334
               

               
Cow position:
               
chr29:17649816-17650131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
22, 28
               

               
Conread position:
               
36-329
               

               
Cow position:
               
chr29:41163821-41163521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
14, 50
               

               
Conread position:
               
38-272
               

               
Cow position:
               
chr29:15262185-15262421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
131, 74
               

               
Conread position:
               
42-336
               

               
Cow position:
               
chr29:39553716-39553418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
142, 59
               

               
Conread position:
               
51-329
               

               
Cow position:
               
chr29:19565815-19565528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
60, 181
               

               
Conread position:
               
63-318
               

               
Cow position:
               
chr29:31748692-31748439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
106, 33
               

               
Conread position:
               
79-336
               

               
Cow position:
               
chr29:6536502-6536770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
91, 226
               

               
Conread position:
               
98-329
               

               
Cow position:
               
chr29:3680311-3680550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
71, 20
               

               
Conread position:
               
109-304
               

               
Cow position:
               
chr29:7331318-7331110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
60, 36
               

               
Conread position:
               
113-280
               

               
Cow position:
               
chr29:40933640-40933818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
118-343
               

               
Cow position:
               
chr29:1643963-1644196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
15, 198
               

               
Conread position:
               
1-272
               

               
Cow position:
               
chr3:58026062-58025782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 85
               

               
Conread position:
               
1-285
               

               
Cow position:
               
chr3:70096999-70096694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
100, 23
               

               
Conread position:
               
1-299
               

               
Cow position:
               
chr3:14881575-14881261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
140, 24
               

               
Conread position:
               
1-313
               

               
Cow position:
               
chr3:31383999-31383695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
168, 50
               

               
Conread position:
               
1-336
               

               
Cow position:
               
chr3:322902-322568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
177, 22
               

               
Conread position:
               
1-336
               

               
Cow position:
               
chr3:16884348-16884021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
201, 81
               

               
Conread position:
               
1-336
               

               
Cow position:
               
chr3:19831204-19830861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 8
               

               
Conread position:
               
1-336
               

               
Cow position:
               
chr3:51068953-51068614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
43, 249
               

               
Conread position:
               
1-337
               

               
Cow position:
               
chr3:57977599-57977257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
91, 246
               

               
Conread position:
               
2-294
               

               
Cow position:
               
chr3:45615290-45615585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
167, 115
               

               
Conread position:
               
2-313
               

               
Cow position:
               
chr3:66847439-66847133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
68, 112
               

               
Conread position:
               
3-336
               

               
Cow position:
               
chr3:24456064-24455733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 42
               

               
Conread position:
               
9-336
               

               
Cow position:
               
chr3:36170977-36170646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
160, 36
               

               
Conread position:
               
11-336
               

               
Cow position:
               
chr3:63139302-63138978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
90, 48
               

               
Conread position:
               
18-336
               

               
Cow position:
               
chr3:27091217-27090896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
79, 42
               

               
Conread position:
               
18-336
               

               
Cow position:
               
chr3:82930034-82930348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
151, 113
               

               
Conread position:
               
24-307
               

               
Cow position:
               
chr3:48995735-48996031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
79, 21
               

               
Conread position:
               
29-313
               

               
Cow position:
               
chr3:42993900-42993603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
136, 0
               

               
Conread position:
               
29-336
               

               
Cow position:
               
chr3:27515253-27515569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
140, 152
               

               
Conread position:
               
36-329
               

               
Cow position:
               
chr3:10891745-10892049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
127, 65
               

               
Conread position:
               
49-259
               

               
Cow position:
               
chr3:83911316-83911546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
57-318
               

               
Cow position:
               
chr3:11659456-11659729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 92
               

               
Conread position:
               
57-329
               

               
Cow position:
               
chr3:80580049-80580326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
146, 61
               

               
Conread position:
               
74-328
               

               
Cow position:
               
chr3:57593918-57594190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
67, 20
               

               
Conread position:
               
74-336
               

               
Cow position:
               
chr3:16635015-16635269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
95, 176
               

               
Conread position:
               
76-328
               

               
Cow position:
               
chr3:49165379-49165117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
104, 32
               

               
Conread position:
               
95-336
               

               
Cow position:
               
chr3:65204753-65204512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
63, 26
               

               
Conread position:
               
96-336
               

               
Cow position:
               
chr3:16716786-16716539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
28, 79
               

               
Conread position:
               
140-336
               

               
Cow position:
               
chr3:27674628-27674423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
63, 117
               

               
Conread position:
               
1-335
               

               
Cow position:
               
chr4:45470894-45471252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
168, 14
               

               
Conread position:
               
1-336
               

               
Cow position:
               
chr4:3971143-3971490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
197, 0
               

               
Conread position:
               
10-330
               

               
Cow position:
               
chr4:995231-994902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
159, 123
               

               
Conread position:
               
18-272
               

               
Cow position:
               
chr4:25823240-25822984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
185, 74
               

               
Conread position:
               
18-329
               

               
Cow position:
               
chr4:47079619-47079311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
185, 53
               

               
Conread position:
               
25-280
               

               
Cow position:
               
chr4:43236320-43236057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
145, 63
               

               
Conread position:
               
27-336
               

               
Cow position:
               
chr4:20789576-20789888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
21, 70
               

               
Conread position:
               
36-256
               

               
Cow position:
               
chr4:46456847-46457077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
134, 0
               

               
Conread position:
               
37-329
               

               
Cow position:
               
chr4:48502638-48502937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
170, 87
               

               
Conread position:
               
45-335
               

               
Cow position:
               
chr4:28181589-28181880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
108, 169
               

               
Conread position:
               
47-272
               

               
Cow position:
               
chr4:9105248-9105481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
122, 49
               

               
Conread position:
               
50-295
               

               
Cow position:
               
chr4:30699837-30700096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
120, 0
               

               
Conread position:
               
64-321
               

               
Cow position:
               
chr4:23309343-23309610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
75, 21
               

               
Conread position:
               
74-336
               

               
Cow position:
               
chr4:64181246-64180975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
44, 192
               

               
Conread position:
               
79-318
               

               
Cow position:
               
chr4:52960886-52960636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
9, 185
               

               
Conread position:
               
93-272
               

               
Cow position:
               
chr4:49990047-49989858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
99-285
               

               
Cow position:
               
chr4:12743273-12743474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
6, 0
               

               
Conread position:
               
1-147
               

               
Cow position:
               
chr5:33792098-33792243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
133, 0
               

               
Conread position:
               
1-242
               

               
Cow position:
               
chr5:16960564-16960316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
168, 23
               

               
Conread position:
               
1-246
               

               
Cow position:
               
chr5:30360597-30360346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
168, 14
               

               
Conread position:
               
1-274
               

               
Cow position:
               
chr5:41575166-41575440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
168, 43
               

               
Conread position:
               
1-321
               

               
Cow position:
               
chr5:21185476-21185145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 56
               

               
Conread position:
               
1-321
               

               
Cow position:
               
chr5:76413602-76413928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
168, 21
               

               
Conread position:
               
1-334
               

               
Cow position:
               
chr5:51818446-51818778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
164, 75
               

               
Conread position:
               
1-336
               

               
Cow position:
               
chr5:15123428-15123093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 81
               

               
Conread position:
               
2-296
               

               
Cow position:
               
chr5:4042338-4042043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
199, 116
               

               
Conread position:
               
3-292
               

               
Cow position:
               
chr5:50166374-50166669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
117, 42
               

               
Conread position:
               
23-238
               

               
Cow position:
               
chr5:21920945-21921170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
65, 103
               

               
Conread position:
               
36-336
               

               
Cow position:
               
chr5:70771049-70771353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
12, 91
               

               
Conread position:
               
50-327
               

               
Cow position:
               
chr5:76141793-76142067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
101, 53
               

               
Conread position:
               
68-333
               

               
Cow position:
               
chr5:23889970-23889693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
99, 22
               

               
Conread position:
               
75-327
               

               
Cow position:
               
chr5:62384321-62384571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
61, 183
               

               
Conread position:
               
87-321
               

               
Cow position:
               
chr5:52611616-52611371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
82, 218
               

               
Conread position:
               
103-318
               

               
Cow position:
               
chr5:70083031-70082823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
70, 89
               

               
Conread position:
               
1-296
               

               
Cow position:
               
chr6:41050990-41051292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
134, 43
               

               
Conread position:
               
1-321
               

               
Cow position:
               
chr6:14305617-14305943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
168, 276
               

               
Conread position:
               
2-336
               

               
Cow position:
               
chr6:53773045-53773399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
70, 312
               

               
Conread position:
               
3-252
               

               
Cow position:
               
chr6:52301735-52301994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
166, 190
               

               
Conread position:
               
3-263
               

               
Cow position:
               
chr6:62852578-62852832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
166, 77
               

               
Conread position:
               
3-327
               

               
Cow position:
               
chr6:47614837-47614511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
192, 22
               

               
Conread position:
               
3-334
               

               
Cow position:
               
chr6:34056875-34056538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
132, 55
               

               
Conread position:
               
26-337
               

               
Cow position:
               
chr6:7759234-7758910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
74, 7
               

               
Conread position:
               
27-295
               

               
Cow position:
               
chr6:15471791-15471513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
97, 33
               

               
Conread position:
               
27-332
               

               
Cow position:
               
chr6:10236215-10236532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
142, 283
               

               
Conread position:
               
38-327
               

               
Cow position:
               
chr6:7049037-7049334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
134, 106
               

               
Conread position:
               
46-336
               

               
Cow position:
               
chr6:28053616-28053332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
30, 79
               

               
Conread position:
               
53-319
               

               
Cow position:
               
chr6:19243081-19243359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
116, 0
               

               
Conread position:
               
63-335
               

               
Cow position:
               
chr6:43103006-43102722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
110, 22
               

               
Conread position:
               
66-309
               

               
Cow position:
               
chr6:16234101-16233849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
103, 59
               

               
Conread position:
               
69-328
               

               
Cow position:
               
chr6:35724445-35724719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 0
               

               
Conread position:
               
72-287
               

               
Cow position:
               
chr6:28844597-28844375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
97, 151
               

               
Conread position:
               
80-336
               

               
Cow position:
               
chr6:54376635-54376902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
91, 21
               

               
Conread position:
               
96-334
               

               
Cow position:
               
chr6:57395653-57395897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
8, 97
               

               
Conread position:
               
97-334
               

               
Cow position:
               
chr6:65011264-65011502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
54, 23
               

               
Conread position:
               
112-329
               

               
Cow position:
               
chr6:38802073-38801858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
38, 81
               

               
Conread position:
               
1-258
               

               
Cow position:
               
chr7:53360202-53359941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
172, 9
               

               
Conread position:
               
1-267
               

               
Cow position:
               
chr7:51703580-51703317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
54, 166
               

               
Conread position:
               
1-321
               

               
Cow position:
               
chr7:10824469-10824154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 201
               

               
Conread position:
               
1-322
               

               
Cow position:
               
chr7:48105114-48105441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
168, 99
               

               
Conread position:
               
1-336
               

               
Cow position:
               
chr7:698593-698941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
168, 62
               

               
Conread position:
               
1-336
               

               
Cow position:
               
chr7:889311-888962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
168, 65
               

               
Conread position:
               
1-336
               

               
Cow position:
               
chr7:21877631-21877291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
168, 71
               

               
Conread position:
               
1-336
               

               
Cow position:
               
chr7:48024446-48024779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
144, 84
               

               
Conread position:
               
1-336
               

               
Cow position:
               
chr7:66274026-66273679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 22
               

               
Conread position:
               
2-336
               

               
Cow position:
               
chr7:22760697-22761061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 15
               

               
Conread position:
               
3-304
               

               
Cow position:
               
chr7:1009947-1009615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
94, 0
               

               
Conread position:
               
8-252
               

               
Cow position:
               
chr7:56092684-56092934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
161, 37
               

               
Conread position:
               
8-308
               

               
Cow position:
               
chr7:39166094-39166395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
186, 50
               

               
Conread position:
               
9-328
               

               
Cow position:
               
chr7:30716505-30716182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
160, 110
               

               
Conread position:
               
9-336
               

               
Cow position:
               
chr7:32438209-32437886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
114, 77
               

               
Conread position:
               
10-329
               

               
Cow position:
               
chr7:26021883-26022207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
159, 34
               

               
Conread position:
               
11-336
               

               
Cow position:
               
chr7:32328936-32329262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
196, 77
               

               
Conread position:
               
18-276
               

               
Cow position:
               
chr7:60942614-60942346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
38, 63
               

               
Conread position:
               
25-316
               

               
Cow position:
               
chr7:51941366-51941667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
144, 37
               

               
Conread position:
               
35-336
               

               
Cow position:
               
chr7:28597374-28597683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
134, 117
               

               
Conread position:
               
39-336
               

               
Cow position:
               
chr7:39146421-39146719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
143, 14
               

               
Conread position:
               
45-308
               

               
Cow position:
               
chr7:51922104-51922364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
125, 17
               

               
Conread position:
               
52-329
               

               
Cow position:
               
chr7:33355715-33355997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
117, 229
               

               
Conread position:
               
55-322
               

               
Cow position:
               
chr7:30546242-30545966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
115, 100
               

               
Conread position:
               
110-318
               

               
Cow position:
               
chr7:34832214-34832436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
1-259
               

               
Cow position:
               
chr8:24386201-24385933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 183
               

               
Conread position:
               
1-269
               

               
Cow position:
               
chr8:615399-615110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
77, 99
               

               
Conread position:
               
1-295
               

               
Cow position:
               
chr8:27561884-27561592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
40, 60
               

               
Conread position:
               
1-297
               

               
Cow position:
               
chr8:44050967-44051275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
168, 0
               

               
Conread position:
               
1-319
               

               
Cow position:
               
chr8:4902176-4902502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
169, 17
               

               
Conread position:
               
1-319
               

               
Cow position:
               
chr8:40108449-40108776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
139, 0
               

               
Conread position:
               
1-332
               

               
Cow position:
               
chr8:30554650-30554299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
1-336
               

               
Cow position:
               
chr8:47821230-47820899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
168, 39
               

               
Conread position:
               
2-265
               

               
Cow position:
               
chr8:56255865-56256139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
2-334
               

               
Cow position:
               
chr8:39049054-39048713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 106
               

               
Conread position:
               
2-336
               

               
Cow position:
               
chr8:38016044-38015702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
167, 31
               

               
Conread position:
               
4-274
               

               
Cow position:
               
chr8:47652227-47651952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
165, 39
               

               
Conread position:
               
4-337
               

               
Cow position:
               
chr8:55981490-55981162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
114, 23
               

               
Conread position:
               
9-252
               

               
Cow position:
               
chr8:16758543-16758294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
160, 116
               

               
Conread position:
               
9-256
               

               
Cow position:
               
chr8:27535586-27535336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
194, 67
               

               
Conread position:
               
10-268
               

               
Cow position:
               
chr8:26338547-26338797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
193, 29
               

               
Conread position:
               
10-329
               

               
Cow position:
               
chr8:17958858-17958533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
159, 127
               

               
Conread position:
               
25-309
               

               
Cow position:
               
chr8:36855376-36855088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
144, 51
               

               
Conread position:
               
26-329
               

               
Cow position:
               
chr8:29273581-29273270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
26, 56
               

               
Conread position:
               
48-298
               

               
Cow position:
               
chr8:56752707-56752965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
122, 93
               

               
Conread position:
               
55-336
               

               
Cow position:
               
chr8:26671755-26672037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
114, 60
               

               
Conread position:
               
56-333
               

               
Cow position:
               
chr8:46518118-46518398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
113, 64
               

               
Conread position:
               
59-270
               

               
Cow position:
               
chr8:55586469-55586248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
60-336
               

               
Cow position:
               
chr8:8225036-8224754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
41, 94
               

               
Conread position:
               
96-327
               

               
Cow position:
               
chr8:36957581-36957338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
73, 94
               

               
Conread position:
               
107-321
               

               
Cow position:
               
chr8:47949336-47949559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
62, 11
               

               
Conread position:
               
122-336
               

               
Cow position:
               
chr8:51999735-51999959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
47, 119
               

               
Conread position:
               
130-336
               

               
Cow position:
               
chr8:25842742-25842956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
39, 168
               

               
Conread position:
               
1-263
               

               
Cow position:
               
chr9:27486987-27486717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
169, 22
               

               
Conread position:
               
1-264
               

               
Cow position:
               
chr9:49754491-49754233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
167, 94
               

               
Conread position:
               
1-320
               

               
Cow position:
               
chr9:31411810-31411482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
46, 91
               

               
Conread position:
               
1-336
               

               
Cow position:
               
chr9:43643731-43643371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
126, 174
               

               
Conread position:
               
1-337
               

               
Cow position:
               
chr9:27004410-27004742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
107, 51
               

               
Conread position:
               
2-329
               

               
Cow position:
               
chr9:7536367-7536695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
168, 43
               

               
Conread position:
               
2-336
               

               
Cow position:
               
chr9:3438495-3438822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
167, 80
               

               
Conread position:
               
2-336
               

               
Cow position:
               
chr9:35022895-35023225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
167, 21
               

               
Conread position:
               
7-299
               

               
Cow position:
               
chr9:51591555-51591863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
42, 23
               

               
Conread position:
               
8-336
               

               
Cow position:
               
chr9:49618837-49619180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 47
               

               
Conread position:
               
10-336
               

               
Cow position:
               
chr9:27690526-27690206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
94, 62
               

               
Conread position:
               
12-296
               

               
Cow position:
               
chr9:62734225-62733939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
69, 27
               

               
Conread position:
               
20-257
               

               
Cow position:
               
chr9:48039699-48039449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
36-274
               

               
Cow position:
               
chr9:14344087-14343836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
22, 80
               

               
Conread position:
               
37-336
               

               
Cow position:
               
chr9:7618690-7618998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
132, 227
               

               
Conread position:
               
45-329
               

               
Cow position:
               
chr9:49202204-49201902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
45, 106
               

               
Conread position:
               
53-336
               

               
Cow position:
               
chr9:39032343-39032638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
21, 63
               

               
Conread position:
               
76-322
               

               
Cow position:
               
chr9:11523393-11523645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
93, 20
               

               
Conread position:
               
111-336
               

               
Cow position:
               
chr9:19537005-19536769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
58, 7
               

               
Conread position:
               
125-272
               

               
Cow position:
               
chr9:12037889-12038047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
128-335
               

               
Cow position:
               
chr9:49683885-49683670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
1-272
               

               
Cow position:
               
chrX:502856-502576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
168, 99
               

               
Conread position:
               
1-295
               

               
Cow position:
               
chrX:37959460-37959763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
94, 71
               

               
Conread position:
               
1-323
               

               
Cow position:
               
chrX:17159287-17158952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
144, 0
               

               
Conread position:
               
1-324
               

               
Cow position:
               
chrX:23236873-23237208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
113, 303
               

               
Conread position:
               
1-326
               

               
Cow position:
               
chrX:27646039-27646361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
168, 44
               

               
Conread position:
               
1-329
               

               
Cow position:
               
chrX:164737-165068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
78, 141
               

               
Conread position:
               
1-334
               

               
Cow position:
               
chrX:21190695-21191034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 49
               

               
Conread position:
               
1-335
               

               
Cow position:
               
chrX:29029860-29029521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
168, 114
               

               
Conread position:
               
1-336
               

               
Cow position:
               
chrX:15989662-15989312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 44
               

               
Conread position:
               
1-337
               

               
Cow position:
               
chrX:2878906-2878579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
168, 52
               

               
Conread position:
               
2-272
               

               
Cow position:
               
chrX:9067898-9068175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
167, 13
               

               
Conread position:
               
2-274
               

               
Cow position:
               
chrX:24889280-24889012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
206, 46
               

               
Conread position:
               
2-327
               

               
Cow position:
               
chrX:16344746-16345083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
59, 105
               

               
Conread position:
               
3-336
               

               
Cow position:
               
chrX:1449019-1449370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 78
               

               
Conread position:
               
8-336
               

               
Cow position:
               
chrX:4063399-4063081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
160, 44
               

               
Conread position:
               
9-287
               

               
Cow position:
               
chrX:4326852-4326552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
95, 0
               

               
Conread position:
               
9-323
               

               
Cow position:
               
chrX:9392026-9391699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
29, 21
               

               
Conread position:
               
10-302
               

               
Cow position:
               
chrX:13654333-13654641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
159, 0
               

               
Conread position:
               
11-308
               

               
Cow position:
               
chrX:26341363-26341061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
38, 90
               

               
Conread position:
               
11-320
               

               
Cow position:
               
chrX:23314963-23314649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 276
               

               
Conread position:
               
11-336
               

               
Cow position:
               
chrX:5567190-5566856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
159, 28
               

               
Conread position:
               
15-336
               

               
Cow position:
               
chrX:23032325-23032648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
78, 123
               

               
Conread position:
               
39-336
               

               
Cow position:
               
chrX:37105078-37105375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
131, 79
               

               
Conread position:
               
55-334
               

               
Cow position:
               
chrX:25737961-25738237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
114, 63
               

               
Conread position:
               
57-313
               

               
Cow position:
               
chrX:28914487-28914739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
141, 106
               

               
Conread position:
               
68-329
               

               
Cow position:
               
chrX:7810096-7809822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
82-336
               

               
Cow position:
               
chrX:12103041-12102784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
87, 24
               

               
Conread position:
               
127-336
               

               
Cow position:
               
chrX:15153990-15154205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
42, 28
               

               
Conread position:
               
128-321
               

               
Cow position:
               
chrX:22102795-22102597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
22, 0