Cow genome map
| Conread name: | rspl02_d22.y1 |
| Conread position: | 127-542 |
| Cow position: | chr1:5420037-5420473 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 280 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 35, 199 |
| Conread position: | 28-277 |
| Cow position: | chr10:8298777-8298541 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 208 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 223, 103 |
| Conread position: | 29-421 |
| Cow position: | chr10:29519275-29518910 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 263, 67 |
| Conread position: | 112-400 |
| Cow position: | chr10:54400753-54400463 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 189 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 54, 88 |
| Conread position: | 127-507 |
| Cow position: | chr10:32835374-32834988 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 244 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 41, 67 |
| Conread position: | 128-537 |
| Cow position: | chr10:18885469-18885877 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 267 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 30, 203 |
| Conread position: | 285-555 |
| Cow position: | chr10:8298111-8297843 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 85 |
| Conread position: | 408-551 |
| Cow position: | chr10:29518761-29518623 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 17, 7 |
| Conread position: | 48-536 |
| Cow position: | chr11:74849097-74848608 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 327 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 45, 37 |
| Conread position: | 116-545 |
| Cow position: | chr12:35368112-35367685 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 276 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 45, 134 |
| Conread position: | 127-538 |
| Cow position: | chr13:22189388-22188957 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 275 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 24, 30 |
| Conread position: | 128-537 |
| Cow position: | chr14:9449162-9449579 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 267 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 38, 58 |
| Conread position: | 159-540 |
| Cow position: | chr14:14030058-14030450 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 253 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 23, 31 |
| Conread position: | 199-525 |
| Cow position: | chr14:17776386-17776701 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 216 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 60, 116 |
| Conread position: | 128-382 |
| Cow position: | chr15:11958131-11958390 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 23, 55 |
| Conread position: | 128-537 |
| Cow position: | chr15:34064331-34063911 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 271 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 49, 193 |
| Conread position: | 197-555 |
| Cow position: | chr15:34364137-34364501 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 233 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 50, 128 |
| Conread position: | 45-300 |
| Cow position: | chr16:15106412-15106670 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 71, 83 |
| Conread position: | 124-537 |
| Cow position: | chr16:19067531-19067102 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 279 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 30, 77 |
| Conread position: | 127-349 |
| Cow position: | chr16:51381552-51381778 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 36, 74 |
| Conread position: | 127-538 |
| Cow position: | chr16:52892593-52892165 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 270 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 24, 196 |
| Conread position: | 123-466 |
| Cow position: | chr17:2006250-2005904 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 232 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 43, 8 |
| Conread position: | 127-508 |
| Cow position: | chr17:9902981-9902587 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 249 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 36, 204 |
| Conread position: | 161-532 |
| Cow position: | chr17:42308217-42308615 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 267 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 19, 170 |
| Conread position: | 199-484 |
| Cow position: | chr18:41498608-41498314 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 199 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 60, 128 |
| Conread position: | 111-422 |
| Cow position: | chr19:28515979-28516298 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 210 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 13, 21 |
| Conread position: | 118-393 |
| Cow position: | chr2:19135244-19134965 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 187 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 45, 9 |
| Conread position: | 127-522 |
| Cow position: | chr2:44439735-44440144 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 257 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 35, 206 |
| Conread position: | 128-395 |
| Cow position: | chr20:9411138-9410866 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 33, 56 |
| Conread position: | 55-524 |
| Cow position: | chr21:27856786-27856305 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 313 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 72, 125 |
| Conread position: | 128-537 |
| Cow position: | chr21:25598567-25598144 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 272 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 38, 58 |
| Conread position: | 159-538 |
| Cow position: | chr21:4898102-4898493 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 252 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 18, 177 |
| Conread position: | 128-537 |
| Cow position: | chr22:11987990-11988407 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 259 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 38, 70 |
| Conread position: | 123-391 |
| Cow position: | chr23:11404959-11405231 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 43, 8 |
| Conread position: | 158-551 |
| Cow position: | chr24:23491903-23491490 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 264 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 22, 36 |
| Conread position: | 162-521 |
| Cow position: | chr24:29071637-29072003 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 237 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 18, 71 |
| Conread position: | 128-387 |
| Cow position: | chr26:2610304-2610562 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 180 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 37, 164 |
| Conread position: | 113-538 |
| Cow position: | chr28:26796504-26796075 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 264 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 56, 22 |
| Conread position: | 130-556 |
| Cow position: | chr28:19388327-19388733 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 274 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 30, 135 |
| Conread position: | 231-538 |
| Cow position: | chr29:35031509-35031828 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 208 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 28, 55 |
| Conread position: | 118-551 |
| Cow position: | chr3:15307981-15307555 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 280 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 44, 228 |
| Conread position: | 128-357 |
| Cow position: | chr3:11543002-11542772 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 23, 29 |
| Conread position: | 228-510 |
| Cow position: | chr3:16896959-16897250 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 188 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 41, 98 |
| Conread position: | 264-524 |
| Cow position: | chr3:27515766-27515509 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 179 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 140, 16 |
| Conread position: | 121-509 |
| Cow position: | chr4:18845256-18844856 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 253 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 33, 10 |
| Conread position: | 199-510 |
| Cow position: | chr4:43045756-43046068 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 207 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 59, 125 |
| Conread position: | 128-537 |
| Cow position: | chr6:10044905-10044482 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 269 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 38, 60 |
| Conread position: | 105-551 |
| Cow position: | chr7:59071805-59071343 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 307 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 46, 21 |
| Conread position: | 127-522 |
| Cow position: | chr7:31316308-31315906 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 257 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 35, 179 |
| Conread position: | 128-526 |
| Cow position: | chr7:53992258-53991852 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 254 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 38, 200 |
| Conread position: | 128-540 |
| Cow position: | chr7:48548366-48548793 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 268 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 40, 402 |
| Conread position: | 34-348 |
| Cow position: | chr8:31568747-31569080 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 218 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 70, 222 |
| Conread position: | 127-541 |
| Cow position: | chr8:26886476-26886049 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 270 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 35, 203 |
| Conread position: | 54-544 |
| Cow position: | chr9:51314531-51315023 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 321 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 37, 75 |
| Conread position: | 123-537 |
| Cow position: | chr9:1983990-1983567 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 264 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 43, 8 |
| Conread position: | 124-350 |
| Cow position: | chr9:48260261-48260482 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 134, 35 |
| Conread position: | 127-527 |
| Cow position: | chr9:45730436-45730015 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 268 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 24, 70 |
| Conread position: | 128-393 |
| Cow position: | chr9:42570843-42570572 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 38, 70 |
| Conread position: | 40-544 |
| Cow position: | chrX:25144711-25144203 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 328 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 74, 124 |
| Conread position: | 112-507 |
| Cow position: | chrX:13800273-13800683 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 264 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 50, 58 |
| Conread position: | 127-484 |
| Cow position: | chrX:28820275-28819912 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 241 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 27, 202 |